2025-12-30T15:31:55,598 Created temporary directory: /tmp/pip-ephem-wheel-cache-bquv8i5p
2025-12-30T15:31:55,600 Created temporary directory: /tmp/pip-build-tracker-yp4ye4wj
2025-12-30T15:31:55,601 Initialized build tracking at /tmp/pip-build-tracker-yp4ye4wj
2025-12-30T15:31:55,601 Created build tracker: /tmp/pip-build-tracker-yp4ye4wj
2025-12-30T15:31:55,602 Entered build tracker: /tmp/pip-build-tracker-yp4ye4wj
2025-12-30T15:31:55,603 Created temporary directory: /tmp/pip-wheel-4dwpbcdb
2025-12-30T15:31:55,605 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2025-12-30T15:31:55,608 Created temporary directory: /tmp/pip-ephem-wheel-cache-ecvdx5wi
2025-12-30T15:31:55,633 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-12-30T15:31:55,637 2 location(s) to search for versions of crempharm:
2025-12-30T15:31:55,637 * https://pypi.org/simple/crempharm/
2025-12-30T15:31:55,637 * https://www.piwheels.org/simple/crempharm/
2025-12-30T15:31:55,638 Fetching project page and analyzing links: https://pypi.org/simple/crempharm/
2025-12-30T15:31:55,639 Getting page https://pypi.org/simple/crempharm/
2025-12-30T15:31:55,640 Found index url https://pypi.org/simple
2025-12-30T15:31:55,855 Fetched page https://pypi.org/simple/crempharm/ as application/vnd.pypi.simple.v1+json
2025-12-30T15:31:55,856   Skipping link: No binaries permitted for crempharm: https://files.pythonhosted.org/packages/23/c4/b209d11a2da64f3104ee1eeec58b914663541e1c74ab2970f578a3c9111b/crempharm-0.3.0-py3-none-any.whl (from https://pypi.org/simple/crempharm/) (requires-python:>=3.6)
2025-12-30T15:31:55,857   Found link https://files.pythonhosted.org/packages/44/e7/296f2f6d24ce169dfdf6a56971b5f3631510115c435e700e0e6dad50878e/crempharm-0.3.0.tar.gz (from https://pypi.org/simple/crempharm/) (requires-python:>=3.6), version: 0.3.0
2025-12-30T15:31:55,858 Fetching project page and analyzing links: https://www.piwheels.org/simple/crempharm/
2025-12-30T15:31:55,859 Getting page https://www.piwheels.org/simple/crempharm/
2025-12-30T15:31:55,861 Found index url https://www.piwheels.org/simple
2025-12-30T15:31:56,019 Fetched page https://www.piwheels.org/simple/crempharm/ as text/html
2025-12-30T15:31:56,020 Skipping link: not a file: https://www.piwheels.org/simple/crempharm/
2025-12-30T15:31:56,021 Skipping link: not a file: https://pypi.org/simple/crempharm/
2025-12-30T15:31:56,040 Given no hashes to check 1 links for project 'crempharm': discarding no candidates
2025-12-30T15:31:56,058 Collecting crempharm==0.3.0
2025-12-30T15:31:56,060   Created temporary directory: /tmp/pip-unpack-2ph682yx
2025-12-30T15:31:56,273   Downloading crempharm-0.3.0.tar.gz (41 kB)
2025-12-30T15:31:56,368   Added crempharm==0.3.0 from https://files.pythonhosted.org/packages/44/e7/296f2f6d24ce169dfdf6a56971b5f3631510115c435e700e0e6dad50878e/crempharm-0.3.0.tar.gz to build tracker '/tmp/pip-build-tracker-yp4ye4wj'
2025-12-30T15:31:56,369   Running setup.py (path:/tmp/pip-wheel-4dwpbcdb/crempharm_bb6a9afa1495464885937da88f660352/setup.py) egg_info for package crempharm
2025-12-30T15:31:56,370   Created temporary directory: /tmp/pip-pip-egg-info-nznqlrb9
2025-12-30T15:31:56,371   Preparing metadata (setup.py): started
2025-12-30T15:31:56,372   Running command python setup.py egg_info
2025-12-30T15:31:57,240   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-12-30T15:31:57,240   !!

2025-12-30T15:31:57,242           ********************************************************************************
2025-12-30T15:31:57,242           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-12-30T15:31:57,244           License :: OSI Approved :: GNU General Public License v3 (GPLv3)

2025-12-30T15:31:57,245           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-12-30T15:31:57,245           ********************************************************************************

2025-12-30T15:31:57,246   !!
2025-12-30T15:31:57,247     self._finalize_license_expression()
2025-12-30T15:31:57,270   running egg_info
2025-12-30T15:31:57,298   creating /tmp/pip-pip-egg-info-nznqlrb9/crempharm.egg-info
2025-12-30T15:31:57,299   writing /tmp/pip-pip-egg-info-nznqlrb9/crempharm.egg-info/PKG-INFO
2025-12-30T15:31:57,303   writing dependency_links to /tmp/pip-pip-egg-info-nznqlrb9/crempharm.egg-info/dependency_links.txt
2025-12-30T15:31:57,305   writing entry points to /tmp/pip-pip-egg-info-nznqlrb9/crempharm.egg-info/entry_points.txt
2025-12-30T15:31:57,307   writing requirements to /tmp/pip-pip-egg-info-nznqlrb9/crempharm.egg-info/requires.txt
2025-12-30T15:31:57,308   writing top-level names to /tmp/pip-pip-egg-info-nznqlrb9/crempharm.egg-info/top_level.txt
2025-12-30T15:31:57,310   writing manifest file '/tmp/pip-pip-egg-info-nznqlrb9/crempharm.egg-info/SOURCES.txt'
2025-12-30T15:31:57,400   reading manifest file '/tmp/pip-pip-egg-info-nznqlrb9/crempharm.egg-info/SOURCES.txt'
2025-12-30T15:31:57,402   reading manifest template 'MANIFEST.in'
2025-12-30T15:31:57,403   adding license file 'LICENSE'
2025-12-30T15:31:57,406   writing manifest file '/tmp/pip-pip-egg-info-nznqlrb9/crempharm.egg-info/SOURCES.txt'
2025-12-30T15:31:57,514   Preparing metadata (setup.py): finished with status 'done'
2025-12-30T15:31:57,518   Source in /tmp/pip-wheel-4dwpbcdb/crempharm_bb6a9afa1495464885937da88f660352 has version 0.3.0, which satisfies requirement crempharm==0.3.0 from https://files.pythonhosted.org/packages/44/e7/296f2f6d24ce169dfdf6a56971b5f3631510115c435e700e0e6dad50878e/crempharm-0.3.0.tar.gz
2025-12-30T15:31:57,519   Removed crempharm==0.3.0 from https://files.pythonhosted.org/packages/44/e7/296f2f6d24ce169dfdf6a56971b5f3631510115c435e700e0e6dad50878e/crempharm-0.3.0.tar.gz from build tracker '/tmp/pip-build-tracker-yp4ye4wj'
2025-12-30T15:31:57,525 Created temporary directory: /tmp/pip-unpack-h20zdl0c
2025-12-30T15:31:57,526 Building wheels for collected packages: crempharm
2025-12-30T15:31:57,531   Created temporary directory: /tmp/pip-wheel-5z5zn63d
2025-12-30T15:31:57,531   Building wheel for crempharm (setup.py): started
2025-12-30T15:31:57,533   Destination directory: /tmp/pip-wheel-5z5zn63d
2025-12-30T15:31:57,533   Running command python setup.py bdist_wheel
2025-12-30T15:31:58,370   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-12-30T15:31:58,371   !!

2025-12-30T15:31:58,372           ********************************************************************************
2025-12-30T15:31:58,372           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-12-30T15:31:58,374           License :: OSI Approved :: GNU General Public License v3 (GPLv3)

2025-12-30T15:31:58,375           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-12-30T15:31:58,375           ********************************************************************************

2025-12-30T15:31:58,377   !!
2025-12-30T15:31:58,377     self._finalize_license_expression()
2025-12-30T15:31:58,378   running bdist_wheel
2025-12-30T15:31:58,510   running build
2025-12-30T15:31:58,511   running build_py
2025-12-30T15:31:58,541   creating build/lib/crempharm
2025-12-30T15:31:58,544   copying crempharm/__init__.py -> build/lib/crempharm
2025-12-30T15:31:58,546   copying crempharm/pgrow.py -> build/lib/crempharm
2025-12-30T15:31:58,549   copying crempharm/database.py -> build/lib/crempharm
2025-12-30T15:31:58,551   copying crempharm/pharm_class.py -> build/lib/crempharm
2025-12-30T15:31:58,553   copying crempharm/expand_mol.py -> build/lib/crempharm
2025-12-30T15:31:58,557   creating build/lib/crempharm/scripts
2025-12-30T15:31:58,558   copying crempharm/scripts/get_mols_seq.py -> build/lib/crempharm/scripts
2025-12-30T15:31:58,560   copying crempharm/scripts/__init__.py -> build/lib/crempharm/scripts
2025-12-30T15:31:58,561   copying crempharm/scripts/create_hash_db.py -> build/lib/crempharm/scripts
2025-12-30T15:31:58,564   copying crempharm/scripts/crem_db_labeling.py -> build/lib/crempharm/scripts
2025-12-30T15:31:58,565   running egg_info
2025-12-30T15:31:58,594   writing crempharm.egg-info/PKG-INFO
2025-12-30T15:31:58,599   writing dependency_links to crempharm.egg-info/dependency_links.txt
2025-12-30T15:31:58,600   writing entry points to crempharm.egg-info/entry_points.txt
2025-12-30T15:31:58,602   writing requirements to crempharm.egg-info/requires.txt
2025-12-30T15:31:58,603   writing top-level names to crempharm.egg-info/top_level.txt
2025-12-30T15:31:58,636   reading manifest file 'crempharm.egg-info/SOURCES.txt'
2025-12-30T15:31:58,639   reading manifest template 'MANIFEST.in'
2025-12-30T15:31:58,640   adding license file 'LICENSE'
2025-12-30T15:31:58,643   writing manifest file 'crempharm.egg-info/SOURCES.txt'
2025-12-30T15:31:58,648   copying crempharm/scripts/smarts_features.txt -> build/lib/crempharm/scripts
2025-12-30T15:31:58,679   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-12-30T15:31:58,680   !!

2025-12-30T15:31:58,681           ********************************************************************************
2025-12-30T15:31:58,681           Please avoid running ``setup.py`` directly.
2025-12-30T15:31:58,682           Instead, use pypa/build, pypa/installer or other
2025-12-30T15:31:58,682           standards-based tools.

2025-12-30T15:31:58,683           This deprecation is overdue, please update your project and remove deprecated
2025-12-30T15:31:58,684           calls to avoid build errors in the future.

2025-12-30T15:31:58,685           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-12-30T15:31:58,686           ********************************************************************************

2025-12-30T15:31:58,687   !!
2025-12-30T15:31:58,688     self.initialize_options()
2025-12-30T15:31:58,709   installing to build/bdist.linux-armv7l/wheel
2025-12-30T15:31:58,710   running install
2025-12-30T15:31:58,734   running install_lib
2025-12-30T15:31:58,762   creating build/bdist.linux-armv7l/wheel
2025-12-30T15:31:58,764   creating build/bdist.linux-armv7l/wheel/crempharm
2025-12-30T15:31:58,766   copying build/lib/crempharm/__init__.py -> build/bdist.linux-armv7l/wheel/./crempharm
2025-12-30T15:31:58,768   copying build/lib/crempharm/pgrow.py -> build/bdist.linux-armv7l/wheel/./crempharm
2025-12-30T15:31:58,770   copying build/lib/crempharm/database.py -> build/bdist.linux-armv7l/wheel/./crempharm
2025-12-30T15:31:58,773   creating build/bdist.linux-armv7l/wheel/crempharm/scripts
2025-12-30T15:31:58,774   copying build/lib/crempharm/scripts/get_mols_seq.py -> build/bdist.linux-armv7l/wheel/./crempharm/scripts
2025-12-30T15:31:58,777   copying build/lib/crempharm/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/./crempharm/scripts
2025-12-30T15:31:58,778   copying build/lib/crempharm/scripts/create_hash_db.py -> build/bdist.linux-armv7l/wheel/./crempharm/scripts
2025-12-30T15:31:58,781   copying build/lib/crempharm/scripts/crem_db_labeling.py -> build/bdist.linux-armv7l/wheel/./crempharm/scripts
2025-12-30T15:31:58,783   copying build/lib/crempharm/scripts/smarts_features.txt -> build/bdist.linux-armv7l/wheel/./crempharm/scripts
2025-12-30T15:31:58,785   copying build/lib/crempharm/pharm_class.py -> build/bdist.linux-armv7l/wheel/./crempharm
2025-12-30T15:31:58,787   copying build/lib/crempharm/expand_mol.py -> build/bdist.linux-armv7l/wheel/./crempharm
2025-12-30T15:31:58,789   running install_egg_info
2025-12-30T15:31:58,826   Copying crempharm.egg-info to build/bdist.linux-armv7l/wheel/./crempharm-0.3.0-py3.11.egg-info
2025-12-30T15:31:58,839   running install_scripts
2025-12-30T15:31:58,855   creating build/bdist.linux-armv7l/wheel/crempharm-0.3.0.dist-info/WHEEL
2025-12-30T15:31:58,858   creating '/tmp/pip-wheel-5z5zn63d/crempharm-0.3.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-12-30T15:31:58,860   adding 'crempharm/__init__.py'
2025-12-30T15:31:58,862   adding 'crempharm/database.py'
2025-12-30T15:31:58,866   adding 'crempharm/expand_mol.py'
2025-12-30T15:31:58,870   adding 'crempharm/pgrow.py'
2025-12-30T15:31:58,872   adding 'crempharm/pharm_class.py'
2025-12-30T15:31:58,873   adding 'crempharm/scripts/__init__.py'
2025-12-30T15:31:58,875   adding 'crempharm/scripts/create_hash_db.py'
2025-12-30T15:31:58,876   adding 'crempharm/scripts/crem_db_labeling.py'
2025-12-30T15:31:58,878   adding 'crempharm/scripts/get_mols_seq.py'
2025-12-30T15:31:58,879   adding 'crempharm/scripts/smarts_features.txt'
2025-12-30T15:31:58,886   adding 'crempharm-0.3.0.dist-info/licenses/LICENSE'
2025-12-30T15:31:58,889   adding 'crempharm-0.3.0.dist-info/METADATA'
2025-12-30T15:31:58,890   adding 'crempharm-0.3.0.dist-info/WHEEL'
2025-12-30T15:31:58,891   adding 'crempharm-0.3.0.dist-info/entry_points.txt'
2025-12-30T15:31:58,892   adding 'crempharm-0.3.0.dist-info/top_level.txt'
2025-12-30T15:31:58,893   adding 'crempharm-0.3.0.dist-info/RECORD'
2025-12-30T15:31:58,895   removing build/bdist.linux-armv7l/wheel
2025-12-30T15:31:59,016   Building wheel for crempharm (setup.py): finished with status 'done'
2025-12-30T15:31:59,018   Created wheel for crempharm: filename=crempharm-0.3.0-py3-none-any.whl size=42490 sha256=f6b41b9b9af4b1e4112c76d40e1a370928dbcaf6dbca615b816d5a82ac88ddc7
2025-12-30T15:31:59,020   Stored in directory: /tmp/pip-ephem-wheel-cache-ecvdx5wi/wheels/41/d0/56/13bdc5d2e1f31c778405b248e4fcf42a10bd34781ec3a6d2df
2025-12-30T15:31:59,032 Successfully built crempharm
2025-12-30T15:31:59,036 Removed build tracker: '/tmp/pip-build-tracker-yp4ye4wj'