2025-12-30T17:36:42,465 Created temporary directory: /tmp/pip-ephem-wheel-cache-jz21uzhk 2025-12-30T17:36:42,467 Created temporary directory: /tmp/pip-build-tracker-9koibk4s 2025-12-30T17:36:42,467 Initialized build tracking at /tmp/pip-build-tracker-9koibk4s 2025-12-30T17:36:42,468 Created build tracker: /tmp/pip-build-tracker-9koibk4s 2025-12-30T17:36:42,468 Entered build tracker: /tmp/pip-build-tracker-9koibk4s 2025-12-30T17:36:42,469 Created temporary directory: /tmp/pip-wheel-6zuw1g9z 2025-12-30T17:36:42,473 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-12-30T17:36:42,475 Created temporary directory: /tmp/pip-ephem-wheel-cache-jr634qpr 2025-12-30T17:36:42,499 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-12-30T17:36:42,503 2 location(s) to search for versions of cool-seq-tool: 2025-12-30T17:36:42,503 * https://pypi.org/simple/cool-seq-tool/ 2025-12-30T17:36:42,503 * https://www.piwheels.org/simple/cool-seq-tool/ 2025-12-30T17:36:42,504 Fetching project page and analyzing links: https://pypi.org/simple/cool-seq-tool/ 2025-12-30T17:36:42,505 Getting page https://pypi.org/simple/cool-seq-tool/ 2025-12-30T17:36:42,506 Found index url https://pypi.org/simple 2025-12-30T17:36:42,723 Fetched page https://pypi.org/simple/cool-seq-tool/ as application/vnd.pypi.simple.v1+json 2025-12-30T17:36:42,739 Skipping link: No binaries permitted for cool-seq-tool: 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https://files.pythonhosted.org/packages/7f/b8/1e1348b8e2289cab00bf1c5c653e6de8a04099cdc4efc0ae7002116023f6/cool_seq_tool-0.15.2-py3-none-any.whl (from https://pypi.org/simple/cool-seq-tool/) (requires-python:>=3.11) 2025-12-30T17:36:42,812 Found link https://files.pythonhosted.org/packages/7c/27/5f6e16b01e2d5ae5598f2e61dee7dc976cc28dd916e9624b153f06b46215/cool_seq_tool-0.15.2.tar.gz (from https://pypi.org/simple/cool-seq-tool/) (requires-python:>=3.11), version: 0.15.2 2025-12-30T17:36:42,813 Fetching project page and analyzing links: https://www.piwheels.org/simple/cool-seq-tool/ 2025-12-30T17:36:42,814 Getting page https://www.piwheels.org/simple/cool-seq-tool/ 2025-12-30T17:36:42,816 Found index url https://www.piwheels.org/simple 2025-12-30T17:36:42,979 Fetched page https://www.piwheels.org/simple/cool-seq-tool/ as text/html 2025-12-30T17:36:42,992 Skipping link: No binaries permitted for cool-seq-tool: 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https://archive1.piwheels.org/simple/cool-seq-tool/cool_seq_tool-0.1.5-py3-none-any.whl#sha256=8c06d9425c581bc6b94bea9cf23a9ba058c0fa5d1999971d6c6b29797366163e (from https://www.piwheels.org/simple/cool-seq-tool/) (requires-python:>=3.8) 2025-12-30T17:36:43,016 Skipping link: No binaries permitted for cool-seq-tool: https://archive1.piwheels.org/simple/cool-seq-tool/cool_seq_tool-0.1.4-py3-none-any.whl#sha256=99837ef6073c54c2795f87af602a31fb916f37a7c1b365962a9e13f9049b0c3d (from https://www.piwheels.org/simple/cool-seq-tool/) (requires-python:>=3.8) 2025-12-30T17:36:43,017 Skipping link: not a file: https://www.piwheels.org/simple/cool-seq-tool/ 2025-12-30T17:36:43,018 Skipping link: not a file: https://pypi.org/simple/cool-seq-tool/ 2025-12-30T17:36:43,041 Given no hashes to check 1 links for project 'cool-seq-tool': discarding no candidates 2025-12-30T17:36:43,059 Collecting cool-seq-tool==0.15.2 2025-12-30T17:36:43,061 Created temporary directory: /tmp/pip-unpack-chy9xivm 2025-12-30T17:36:43,412 Downloading cool_seq_tool-0.15.2.tar.gz (4.4 MB) 2025-12-30T17:36:44,966 Added cool-seq-tool==0.15.2 from https://files.pythonhosted.org/packages/7c/27/5f6e16b01e2d5ae5598f2e61dee7dc976cc28dd916e9624b153f06b46215/cool_seq_tool-0.15.2.tar.gz to build tracker '/tmp/pip-build-tracker-9koibk4s' 2025-12-30T17:36:44,974 Created temporary directory: /tmp/pip-build-env-foaq9a_q 2025-12-30T17:36:44,978 Installing build dependencies: started 2025-12-30T17:36:44,979 Running command pip subprocess to install build dependencies 2025-12-30T17:36:46,108 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2025-12-30T17:36:46,758 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-12-30T17:36:46,781 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-12-30T17:36:48,490 Collecting setuptools>=64 2025-12-30T17:36:48,594 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2025-12-30T17:36:48,963 Collecting setuptools_scm>=8 2025-12-30T17:36:48,982 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-9.2.2-py3-none-any.whl (62 kB) 2025-12-30T17:36:49,165 Collecting packaging>=20 2025-12-30T17:36:49,180 Using cached https://www.piwheels.org/simple/packaging/packaging-25.0-py3-none-any.whl (66 kB) 2025-12-30T17:36:52,206 Installing collected packages: setuptools, packaging, setuptools_scm 2025-12-30T17:36:56,320 Creating /tmp/pip-build-env-foaq9a_q/overlay/local/bin 2025-12-30T17:36:56,322 changing mode of /tmp/pip-build-env-foaq9a_q/overlay/local/bin/setuptools-scm to 755 2025-12-30T17:36:56,346 Successfully installed packaging-25.0 setuptools-80.9.0 setuptools_scm-9.2.2 2025-12-30T17:36:56,625 Installing build dependencies: finished with status 'done' 2025-12-30T17:36:56,632 Getting requirements to build wheel: started 2025-12-30T17:36:56,633 Running command Getting requirements to build wheel 2025-12-30T17:36:57,409 running egg_info 2025-12-30T17:36:57,417 writing src/cool_seq_tool.egg-info/PKG-INFO 2025-12-30T17:36:57,427 writing dependency_links to src/cool_seq_tool.egg-info/dependency_links.txt 2025-12-30T17:36:57,434 writing requirements to src/cool_seq_tool.egg-info/requires.txt 2025-12-30T17:36:57,435 writing top-level names to src/cool_seq_tool.egg-info/top_level.txt 2025-12-30T17:36:57,490 listing git files failed - pretending there aren't any 2025-12-30T17:36:57,495 reading manifest file 'src/cool_seq_tool.egg-info/SOURCES.txt' 2025-12-30T17:36:57,504 adding license file 'LICENSE' 2025-12-30T17:36:57,508 writing manifest file 'src/cool_seq_tool.egg-info/SOURCES.txt' 2025-12-30T17:36:57,609 Getting requirements to build wheel: finished with status 'done' 2025-12-30T17:36:57,613 Created temporary directory: /tmp/pip-modern-metadata-rmssejvd 2025-12-30T17:36:57,616 Preparing metadata (pyproject.toml): started 2025-12-30T17:36:57,617 Running command Preparing metadata (pyproject.toml) 2025-12-30T17:36:58,359 running dist_info 2025-12-30T17:36:58,374 creating /tmp/pip-modern-metadata-rmssejvd/cool_seq_tool.egg-info 2025-12-30T17:36:58,375 writing /tmp/pip-modern-metadata-rmssejvd/cool_seq_tool.egg-info/PKG-INFO 2025-12-30T17:36:58,385 writing dependency_links to /tmp/pip-modern-metadata-rmssejvd/cool_seq_tool.egg-info/dependency_links.txt 2025-12-30T17:36:58,391 writing requirements to /tmp/pip-modern-metadata-rmssejvd/cool_seq_tool.egg-info/requires.txt 2025-12-30T17:36:58,392 writing top-level names to /tmp/pip-modern-metadata-rmssejvd/cool_seq_tool.egg-info/top_level.txt 2025-12-30T17:36:58,394 writing manifest file '/tmp/pip-modern-metadata-rmssejvd/cool_seq_tool.egg-info/SOURCES.txt' 2025-12-30T17:36:58,444 listing git files failed - pretending there aren't any 2025-12-30T17:36:58,448 reading manifest file '/tmp/pip-modern-metadata-rmssejvd/cool_seq_tool.egg-info/SOURCES.txt' 2025-12-30T17:36:58,450 adding license file 'LICENSE' 2025-12-30T17:36:58,454 writing manifest file '/tmp/pip-modern-metadata-rmssejvd/cool_seq_tool.egg-info/SOURCES.txt' 2025-12-30T17:36:58,455 creating '/tmp/pip-modern-metadata-rmssejvd/cool_seq_tool-0.15.2.dist-info' 2025-12-30T17:36:58,585 Preparing metadata (pyproject.toml): finished with status 'done' 2025-12-30T17:36:58,590 Source in /tmp/pip-wheel-6zuw1g9z/cool-seq-tool_406a3c18e36048e7a5bbe3989e1ba416 has version 0.15.2, which satisfies requirement cool-seq-tool==0.15.2 from https://files.pythonhosted.org/packages/7c/27/5f6e16b01e2d5ae5598f2e61dee7dc976cc28dd916e9624b153f06b46215/cool_seq_tool-0.15.2.tar.gz 2025-12-30T17:36:58,591 Removed cool-seq-tool==0.15.2 from https://files.pythonhosted.org/packages/7c/27/5f6e16b01e2d5ae5598f2e61dee7dc976cc28dd916e9624b153f06b46215/cool_seq_tool-0.15.2.tar.gz from build tracker '/tmp/pip-build-tracker-9koibk4s' 2025-12-30T17:36:58,597 Created temporary directory: /tmp/pip-unpack-r0cnyg44 2025-12-30T17:36:58,598 Building wheels for collected packages: cool-seq-tool 2025-12-30T17:36:58,603 Created temporary directory: /tmp/pip-wheel-8oyfx5a_ 2025-12-30T17:36:58,603 Destination directory: /tmp/pip-wheel-8oyfx5a_ 2025-12-30T17:36:58,606 Building wheel for cool-seq-tool (pyproject.toml): started 2025-12-30T17:36:58,607 Running command Building wheel for cool-seq-tool (pyproject.toml) 2025-12-30T17:36:59,317 running bdist_wheel 2025-12-30T17:36:59,344 running build 2025-12-30T17:36:59,344 running build_py 2025-12-30T17:36:59,352 creating build/lib/cool_seq_tool 2025-12-30T17:36:59,354 copying src/cool_seq_tool/__init__.py -> build/lib/cool_seq_tool 2025-12-30T17:36:59,356 copying src/cool_seq_tool/schemas.py -> build/lib/cool_seq_tool 2025-12-30T17:36:59,359 copying src/cool_seq_tool/app.py -> build/lib/cool_seq_tool 2025-12-30T17:36:59,361 copying src/cool_seq_tool/utils.py -> build/lib/cool_seq_tool 2025-12-30T17:36:59,364 creating build/lib/cool_seq_tool/sources 2025-12-30T17:36:59,365 copying src/cool_seq_tool/sources/transcript_mappings.py -> build/lib/cool_seq_tool/sources 2025-12-30T17:36:59,368 copying src/cool_seq_tool/sources/__init__.py -> build/lib/cool_seq_tool/sources 2025-12-30T17:36:59,370 copying src/cool_seq_tool/sources/mane_transcript_mappings.py -> build/lib/cool_seq_tool/sources 2025-12-30T17:36:59,372 copying src/cool_seq_tool/sources/uta_database.py -> build/lib/cool_seq_tool/sources 2025-12-30T17:36:59,375 creating build/lib/cool_seq_tool/handlers 2025-12-30T17:36:59,376 copying src/cool_seq_tool/handlers/__init__.py -> build/lib/cool_seq_tool/handlers 2025-12-30T17:36:59,379 copying src/cool_seq_tool/handlers/seqrepo_access.py -> build/lib/cool_seq_tool/handlers 2025-12-30T17:36:59,382 creating build/lib/cool_seq_tool/mappers 2025-12-30T17:36:59,383 copying src/cool_seq_tool/mappers/liftover.py -> build/lib/cool_seq_tool/mappers 2025-12-30T17:36:59,385 copying src/cool_seq_tool/mappers/__init__.py -> build/lib/cool_seq_tool/mappers 2025-12-30T17:36:59,387 copying src/cool_seq_tool/mappers/mane_transcript.py -> build/lib/cool_seq_tool/mappers 2025-12-30T17:36:59,390 copying src/cool_seq_tool/mappers/exon_genomic_coords.py -> build/lib/cool_seq_tool/mappers 2025-12-30T17:36:59,394 copying src/cool_seq_tool/mappers/feature_overlap.py -> build/lib/cool_seq_tool/mappers 2025-12-30T17:36:59,396 copying src/cool_seq_tool/mappers/alignment.py -> build/lib/cool_seq_tool/mappers 2025-12-30T17:36:59,399 creating build/lib/cool_seq_tool/resources 2025-12-30T17:36:59,400 copying src/cool_seq_tool/resources/__init__.py -> build/lib/cool_seq_tool/resources 2025-12-30T17:36:59,402 copying src/cool_seq_tool/resources/status.py -> build/lib/cool_seq_tool/resources 2025-12-30T17:36:59,405 copying src/cool_seq_tool/resources/data_files.py -> build/lib/cool_seq_tool/resources 2025-12-30T17:36:59,407 running egg_info 2025-12-30T17:36:59,421 writing src/cool_seq_tool.egg-info/PKG-INFO 2025-12-30T17:36:59,431 writing dependency_links to src/cool_seq_tool.egg-info/dependency_links.txt 2025-12-30T17:36:59,436 writing requirements to src/cool_seq_tool.egg-info/requires.txt 2025-12-30T17:36:59,437 writing top-level names to src/cool_seq_tool.egg-info/top_level.txt 2025-12-30T17:36:59,474 listing git files failed - pretending there aren't any 2025-12-30T17:36:59,478 reading manifest file 'src/cool_seq_tool.egg-info/SOURCES.txt' 2025-12-30T17:36:59,483 adding license file 'LICENSE' 2025-12-30T17:36:59,487 writing manifest file 'src/cool_seq_tool.egg-info/SOURCES.txt' 2025-12-30T17:36:59,493 copying src/cool_seq_tool/resources/transcript_mapping.tsv -> build/lib/cool_seq_tool/resources 2025-12-30T17:37:00,197 installing to build/bdist.linux-armv7l/wheel 2025-12-30T17:37:00,198 running install 2025-12-30T17:37:00,223 running install_lib 2025-12-30T17:37:00,230 creating build/bdist.linux-armv7l/wheel 2025-12-30T17:37:00,232 creating build/bdist.linux-armv7l/wheel/cool_seq_tool 2025-12-30T17:37:00,234 creating build/bdist.linux-armv7l/wheel/cool_seq_tool/sources 2025-12-30T17:37:00,235 copying build/lib/cool_seq_tool/sources/transcript_mappings.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/sources 2025-12-30T17:37:00,238 copying build/lib/cool_seq_tool/sources/__init__.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/sources 2025-12-30T17:37:00,239 copying build/lib/cool_seq_tool/sources/mane_transcript_mappings.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/sources 2025-12-30T17:37:00,242 copying build/lib/cool_seq_tool/sources/uta_database.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/sources 2025-12-30T17:37:00,245 copying build/lib/cool_seq_tool/__init__.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool 2025-12-30T17:37:00,247 creating build/bdist.linux-armv7l/wheel/cool_seq_tool/handlers 2025-12-30T17:37:00,248 copying build/lib/cool_seq_tool/handlers/__init__.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/handlers 2025-12-30T17:37:00,250 copying build/lib/cool_seq_tool/handlers/seqrepo_access.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/handlers 2025-12-30T17:37:00,252 copying build/lib/cool_seq_tool/schemas.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool 2025-12-30T17:37:00,255 creating build/bdist.linux-armv7l/wheel/cool_seq_tool/mappers 2025-12-30T17:37:00,256 copying build/lib/cool_seq_tool/mappers/liftover.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/mappers 2025-12-30T17:37:00,258 copying build/lib/cool_seq_tool/mappers/__init__.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/mappers 2025-12-30T17:37:00,259 copying build/lib/cool_seq_tool/mappers/mane_transcript.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/mappers 2025-12-30T17:37:00,263 copying build/lib/cool_seq_tool/mappers/exon_genomic_coords.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/mappers 2025-12-30T17:37:00,266 copying build/lib/cool_seq_tool/mappers/feature_overlap.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/mappers 2025-12-30T17:37:00,268 copying build/lib/cool_seq_tool/mappers/alignment.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/mappers 2025-12-30T17:37:00,270 copying build/lib/cool_seq_tool/app.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool 2025-12-30T17:37:00,272 copying build/lib/cool_seq_tool/utils.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool 2025-12-30T17:37:00,275 creating build/bdist.linux-armv7l/wheel/cool_seq_tool/resources 2025-12-30T17:37:00,275 copying build/lib/cool_seq_tool/resources/__init__.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/resources 2025-12-30T17:37:00,277 copying build/lib/cool_seq_tool/resources/status.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/resources 2025-12-30T17:37:00,279 copying build/lib/cool_seq_tool/resources/transcript_mapping.tsv -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/resources 2025-12-30T17:37:00,625 copying build/lib/cool_seq_tool/resources/data_files.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/resources 2025-12-30T17:37:00,627 running install_egg_info 2025-12-30T17:37:00,635 Copying src/cool_seq_tool.egg-info to build/bdist.linux-armv7l/wheel/./cool_seq_tool-0.15.2-py3.11.egg-info 2025-12-30T17:37:00,645 running install_scripts 2025-12-30T17:37:00,655 creating build/bdist.linux-armv7l/wheel/cool_seq_tool-0.15.2.dist-info/WHEEL 2025-12-30T17:37:00,657 creating '/tmp/pip-wheel-8oyfx5a_/.tmp-j3dxrctb/cool_seq_tool-0.15.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-12-30T17:37:00,660 adding 'cool_seq_tool/__init__.py' 2025-12-30T17:37:00,661 adding 'cool_seq_tool/app.py' 2025-12-30T17:37:00,663 adding 'cool_seq_tool/schemas.py' 2025-12-30T17:37:00,664 adding 'cool_seq_tool/utils.py' 2025-12-30T17:37:00,666 adding 'cool_seq_tool/handlers/__init__.py' 2025-12-30T17:37:00,668 adding 'cool_seq_tool/handlers/seqrepo_access.py' 2025-12-30T17:37:00,670 adding 'cool_seq_tool/mappers/__init__.py' 2025-12-30T17:37:00,673 adding 'cool_seq_tool/mappers/alignment.py' 2025-12-30T17:37:00,678 adding 'cool_seq_tool/mappers/exon_genomic_coords.py' 2025-12-30T17:37:00,681 adding 'cool_seq_tool/mappers/feature_overlap.py' 2025-12-30T17:37:00,682 adding 'cool_seq_tool/mappers/liftover.py' 2025-12-30T17:37:00,688 adding 'cool_seq_tool/mappers/mane_transcript.py' 2025-12-30T17:37:00,691 adding 'cool_seq_tool/resources/__init__.py' 2025-12-30T17:37:00,693 adding 'cool_seq_tool/resources/data_files.py' 2025-12-30T17:37:00,695 adding 'cool_seq_tool/resources/status.py' 2025-12-30T17:37:03,299 adding 'cool_seq_tool/resources/transcript_mapping.tsv' 2025-12-30T17:37:03,450 adding 'cool_seq_tool/sources/__init__.py' 2025-12-30T17:37:03,452 adding 'cool_seq_tool/sources/mane_transcript_mappings.py' 2025-12-30T17:37:03,454 adding 'cool_seq_tool/sources/transcript_mappings.py' 2025-12-30T17:37:03,459 adding 'cool_seq_tool/sources/uta_database.py' 2025-12-30T17:37:03,462 adding 'cool_seq_tool-0.15.2.dist-info/licenses/LICENSE' 2025-12-30T17:37:03,464 adding 'cool_seq_tool-0.15.2.dist-info/METADATA' 2025-12-30T17:37:03,465 adding 'cool_seq_tool-0.15.2.dist-info/WHEEL' 2025-12-30T17:37:03,466 adding 'cool_seq_tool-0.15.2.dist-info/top_level.txt' 2025-12-30T17:37:03,468 adding 'cool_seq_tool-0.15.2.dist-info/RECORD' 2025-12-30T17:37:03,525 removing build/bdist.linux-armv7l/wheel 2025-12-30T17:37:03,646 Building wheel for cool-seq-tool (pyproject.toml): finished with status 'done' 2025-12-30T17:37:03,725 Created wheel for cool-seq-tool: filename=cool_seq_tool-0.15.2-py3-none-any.whl size=4046063 sha256=0a09810787f04b5ba2cfe5721167d8dd9946bb9a0a8b7c2650e854b14b1b428b 2025-12-30T17:37:03,727 Stored in directory: /tmp/pip-ephem-wheel-cache-jr634qpr/wheels/a7/c8/da/9242f2ee25668f0fe3386d0dbae0018bc462fd20e442c0b088 2025-12-30T17:37:03,740 Successfully built cool-seq-tool 2025-12-30T17:37:03,846 Removed build tracker: '/tmp/pip-build-tracker-9koibk4s'