2026-01-03T04:52:17,827 Created temporary directory: /tmp/pip-ephem-wheel-cache-ugnsvh37
2026-01-03T04:52:17,829 Created temporary directory: /tmp/pip-build-tracker-u5lkvz_h
2026-01-03T04:52:17,829 Initialized build tracking at /tmp/pip-build-tracker-u5lkvz_h
2026-01-03T04:52:17,830 Created build tracker: /tmp/pip-build-tracker-u5lkvz_h
2026-01-03T04:52:17,830 Entered build tracker: /tmp/pip-build-tracker-u5lkvz_h
2026-01-03T04:52:17,831 Created temporary directory: /tmp/pip-wheel-z_05bccn
2026-01-03T04:52:17,834 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-01-03T04:52:17,836 Created temporary directory: /tmp/pip-ephem-wheel-cache-80dr3jg0
2026-01-03T04:52:17,861 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-01-03T04:52:17,864 2 location(s) to search for versions of biocutils:
2026-01-03T04:52:17,864 * https://pypi.org/simple/biocutils/
2026-01-03T04:52:17,864 * https://www.piwheels.org/simple/biocutils/
2026-01-03T04:52:17,865 Fetching project page and analyzing links: https://pypi.org/simple/biocutils/
2026-01-03T04:52:17,866 Getting page https://pypi.org/simple/biocutils/
2026-01-03T04:52:17,867 Found index url https://pypi.org/simple
2026-01-03T04:52:18,078 Fetched page https://pypi.org/simple/biocutils/ as application/vnd.pypi.simple.v1+json
2026-01-03T04:52:18,087   Found link https://files.pythonhosted.org/packages/65/92/c409f2ae26598bcfc7b77e78fcf4224a50fc26c209f7b7311f8589b92f9c/biocutils-0.0.1.tar.gz (from https://pypi.org/simple/biocutils/), version: 0.0.1
2026-01-03T04:52:18,088   Found link https://files.pythonhosted.org/packages/b5/a0/29c24b56973501ca65d10dd6e17dfb13efb1d510e9fbbe920f6010058463/biocutils-0.0.2.tar.gz (from https://pypi.org/simple/biocutils/), version: 0.0.2
2026-01-03T04:52:18,088   Found link https://files.pythonhosted.org/packages/46/3a/5c48dbdf6e2a0d4fa049a0d1e8f97f33a38f11f8880c328e65273956df07/biocutils-0.0.3.tar.gz (from https://pypi.org/simple/biocutils/), version: 0.0.3
2026-01-03T04:52:18,089   Found link https://files.pythonhosted.org/packages/66/7f/e0f5c762a3a6960dc54ee89637389d7d6395dd18e7b9dcf4596bb0babec1/biocutils-0.0.4.tar.gz (from https://pypi.org/simple/biocutils/), version: 0.0.4
2026-01-03T04:52:18,090   Found link https://files.pythonhosted.org/packages/1c/b6/125205832da97a68904d82248e293cb1f0a9440cb78efeedf038ee822e9b/biocutils-0.0.5.tar.gz (from https://pypi.org/simple/biocutils/), version: 0.0.5
2026-01-03T04:52:18,091   Found link https://files.pythonhosted.org/packages/d6/de/49335b740de844993c6251dead61523f12ba5df37c95b6f1c5deea48cf98/biocutils-0.0.6.tar.gz (from https://pypi.org/simple/biocutils/), version: 0.0.6
2026-01-03T04:52:18,091   Found link https://files.pythonhosted.org/packages/73/ee/469b39221caf0f043478901805f4c5a206e6773c69dd976c7e3d6f98f207/biocutils-0.0.7.tar.gz (from https://pypi.org/simple/biocutils/), version: 0.0.7
2026-01-03T04:52:18,092   Skipping link: No binaries permitted for biocutils: https://files.pythonhosted.org/packages/e3/01/4b9e88a00cd8fa7bf310908febf68f0c00e09963de329be4cfc4d7167d40/biocutils-0.1.0-py3-none-any.whl (from https://pypi.org/simple/biocutils/) (requires-python:>=3.8)
2026-01-03T04:52:18,093   Found link https://files.pythonhosted.org/packages/b5/78/8c917210ac5d2b3909a6d6bc546bfe2350eeab43528fe8fb89665a41f7c8/biocutils-0.1.0.tar.gz (from https://pypi.org/simple/biocutils/) (requires-python:>=3.8), version: 0.1.0
2026-01-03T04:52:18,094   Skipping link: No binaries permitted for biocutils: https://files.pythonhosted.org/packages/15/05/f65279dcc93aa8648638fa536315670c68febbfc14dc999c5a72eeaab1b3/biocutils-0.1.1-py3-none-any.whl (from https://pypi.org/simple/biocutils/) (requires-python:>=3.8)
2026-01-03T04:52:18,095   Found link https://files.pythonhosted.org/packages/f3/69/f41cbf20f8851854010bffdf107b4014ac7a3996959880f573a9d2e6924f/biocutils-0.1.1.tar.gz (from https://pypi.org/simple/biocutils/) (requires-python:>=3.8), version: 0.1.1
2026-01-03T04:52:18,095   Skipping link: No binaries permitted for biocutils: https://files.pythonhosted.org/packages/1d/df/012402da66dcb5761aa8de40829aafbae60a6741d5bdb4dde1ed55f76a11/biocutils-0.1.2-py3-none-any.whl (from https://pypi.org/simple/biocutils/) (requires-python:>=3.8)
2026-01-03T04:52:18,097   Found link https://files.pythonhosted.org/packages/77/6b/a362d065d306ad6c54513a9f56fdd1b850361bcd5c25ee7c593624bc1c13/biocutils-0.1.2.tar.gz (from https://pypi.org/simple/biocutils/) (requires-python:>=3.8), version: 0.1.2
2026-01-03T04:52:18,097   Skipping link: No binaries permitted for biocutils: https://files.pythonhosted.org/packages/e9/8d/58e40042afbda2bd54e0e8721f8afa1be1d5373f468734dc282bc9e2c59f/biocutils-0.1.3-py3-none-any.whl (from https://pypi.org/simple/biocutils/) (requires-python:>=3.8)
2026-01-03T04:52:18,098   Found link https://files.pythonhosted.org/packages/e0/9b/5bbcd4c5b501fec2442093e5272107792e486796c555380050163924b876/biocutils-0.1.3.tar.gz (from https://pypi.org/simple/biocutils/) (requires-python:>=3.8), version: 0.1.3
2026-01-03T04:52:18,099   Skipping link: No binaries permitted for biocutils: https://files.pythonhosted.org/packages/07/ce/fbf0d8f1075e88bb9ae78eb1ad71c51a3bc5973925d904b118c14508ca69/biocutils-0.1.4-py3-none-any.whl (from https://pypi.org/simple/biocutils/) (requires-python:>=3.8)
2026-01-03T04:52:18,100   Found link https://files.pythonhosted.org/packages/6e/ad/9d39af1df08e21d76535f4b2d5987aae154cc2836c991ebce0862c28861c/biocutils-0.1.4.tar.gz (from https://pypi.org/simple/biocutils/) (requires-python:>=3.8), version: 0.1.4
2026-01-03T04:52:18,100   Skipping link: No binaries permitted for biocutils: https://files.pythonhosted.org/packages/e6/34/f0e8e18500b77895351d7e8d5c0632d80862cd8f236303222f6990856e47/biocutils-0.1.5-py3-none-any.whl (from https://pypi.org/simple/biocutils/) (requires-python:>=3.8)
2026-01-03T04:52:18,101   Found link https://files.pythonhosted.org/packages/4a/e1/91e24dfb0b4108753b08db95269737b0269f6716b2c5b3afd862bed4c54b/biocutils-0.1.5.tar.gz (from https://pypi.org/simple/biocutils/) (requires-python:>=3.8), version: 0.1.5
2026-01-03T04:52:18,102   Skipping link: No binaries permitted for biocutils: https://files.pythonhosted.org/packages/5c/64/1e544efee5bdb8ec8cacc51c05904e8c707ecec87d97206c7ed8a940ebba/biocutils-0.1.6-py3-none-any.whl (from https://pypi.org/simple/biocutils/) (requires-python:>=3.8)
2026-01-03T04:52:18,103   Found link https://files.pythonhosted.org/packages/86/8b/8e00e2ea4a2e25642e0d6105798a72bd9586d5a979ff38be00bf3fad8f0f/biocutils-0.1.6.tar.gz (from https://pypi.org/simple/biocutils/) (requires-python:>=3.8), version: 0.1.6
2026-01-03T04:52:18,104   Skipping link: No binaries permitted for biocutils: https://files.pythonhosted.org/packages/bc/ed/8c87ab2dcdb92518ca5bc2f281b5ff3dc25ec6719093a92b24eaa4e42981/biocutils-0.1.7-py3-none-any.whl (from https://pypi.org/simple/biocutils/) (requires-python:>=3.8)
2026-01-03T04:52:18,105   Found link https://files.pythonhosted.org/packages/ca/2b/ecbb0867f3d0c02c17f03f82d627c7fde159f335c01d1fd99fb092fda6c8/biocutils-0.1.7.tar.gz (from https://pypi.org/simple/biocutils/) (requires-python:>=3.8), version: 0.1.7
2026-01-03T04:52:18,105   Skipping link: No binaries permitted for biocutils: https://files.pythonhosted.org/packages/b2/67/1acd43fa2fae2a2845005deeef78c6a1ddcb72e3b71aa4f4a17275f7083c/biocutils-0.2.0-py3-none-any.whl (from https://pypi.org/simple/biocutils/) (requires-python:>=3.9)
2026-01-03T04:52:18,106   Found link https://files.pythonhosted.org/packages/e8/3e/54723a762363692e060e66972c7d4768dc9d0d1c335842ccb897e3b94de7/biocutils-0.2.0.tar.gz (from https://pypi.org/simple/biocutils/) (requires-python:>=3.9), version: 0.2.0
2026-01-03T04:52:18,107   Skipping link: No binaries permitted for biocutils: https://files.pythonhosted.org/packages/da/a8/06df99c38a6a9715f65f07d0803b67d63f9e49835cd16518bef31f6f9da9/biocutils-0.2.1-py3-none-any.whl (from https://pypi.org/simple/biocutils/) (requires-python:>=3.9)
2026-01-03T04:52:18,108   Found link https://files.pythonhosted.org/packages/ed/c8/7929e3ad5fb235021efdbb536fa721854ed9c154bfceaad8c018244e42f7/biocutils-0.2.1.tar.gz (from https://pypi.org/simple/biocutils/) (requires-python:>=3.9), version: 0.2.1
2026-01-03T04:52:18,109   Skipping link: No binaries permitted for biocutils: https://files.pythonhosted.org/packages/16/45/70ac20e09eaf043968fb92d0db3468ef29c593e83275418ea2905a9959dc/biocutils-0.2.2-py3-none-any.whl (from https://pypi.org/simple/biocutils/) (requires-python:>=3.9)
2026-01-03T04:52:18,110   Found link https://files.pythonhosted.org/packages/0c/e9/15a148fda2fddefb873a6c09ea484e206aeb59d71c0e661a377e12181f95/biocutils-0.2.2.tar.gz (from https://pypi.org/simple/biocutils/) (requires-python:>=3.9), version: 0.2.2
2026-01-03T04:52:18,110   Skipping link: No binaries permitted for biocutils: https://files.pythonhosted.org/packages/23/f7/a5e64053786509f7bc0b5b77fbb68709035c219f72e35e3103351a21ee60/biocutils-0.2.3-py3-none-any.whl (from https://pypi.org/simple/biocutils/) (requires-python:>=3.9)
2026-01-03T04:52:18,111   Found link https://files.pythonhosted.org/packages/59/cb/404e7da59034accc8ea57771e73d471c5f291d2e2e74e13201f1b3d5d398/biocutils-0.2.3.tar.gz (from https://pypi.org/simple/biocutils/) (requires-python:>=3.9), version: 0.2.3
2026-01-03T04:52:18,112   Skipping link: No binaries permitted for biocutils: https://files.pythonhosted.org/packages/cf/c9/3a1985ee38cc4f05404f67150f713824ed9ea2ae44ac32b020ffee120064/biocutils-0.3.0-py3-none-any.whl (from https://pypi.org/simple/biocutils/) (requires-python:>=3.9)
2026-01-03T04:52:18,112   Found link https://files.pythonhosted.org/packages/6c/f7/b9e4cbdcf1223c36329f4c698b9057998acba8cc94a32ce9bb8993eb36fa/biocutils-0.3.0.tar.gz (from https://pypi.org/simple/biocutils/) (requires-python:>=3.9), version: 0.3.0
2026-01-03T04:52:18,113   Skipping link: No binaries permitted for biocutils: https://files.pythonhosted.org/packages/86/ff/4c54292edf023bf241e242c5b4d1cb793e1be4055c21580df61cecf7dc8a/biocutils-0.3.1.dev0-py3-none-any.whl (from https://pypi.org/simple/biocutils/) (requires-python:>=3.9)
2026-01-03T04:52:18,114   Found link https://files.pythonhosted.org/packages/50/ce/171fa5fa5596c84823512d4ec1680e03ac01ed0992725c795ae1c431c80b/biocutils-0.3.1.dev0.tar.gz (from https://pypi.org/simple/biocutils/) (requires-python:>=3.9), version: 0.3.1.dev0
2026-01-03T04:52:18,115   Skipping link: No binaries permitted for biocutils: https://files.pythonhosted.org/packages/2d/55/7febc5df686bd94e51eafcca73a5bdbc060c120f7f9b74980598dea60448/biocutils-0.3.1-py3-none-any.whl (from https://pypi.org/simple/biocutils/) (requires-python:>=3.9)
2026-01-03T04:52:18,116   Found link https://files.pythonhosted.org/packages/d7/c3/9f6ce9426d06f3afb8881bf032179054a430330924aed71614a0ced089f8/biocutils-0.3.1.tar.gz (from https://pypi.org/simple/biocutils/) (requires-python:>=3.9), version: 0.3.1
2026-01-03T04:52:18,116   Skipping link: No binaries permitted for biocutils: https://files.pythonhosted.org/packages/71/f2/d59c6a769f851b84bebd7f51881d09b5b2ad6fc82f0efe8c7b4c71bf91ca/biocutils-0.3.2.dev1-py3-none-any.whl (from https://pypi.org/simple/biocutils/) (requires-python:>=3.9)
2026-01-03T04:52:18,117   Found link https://files.pythonhosted.org/packages/d8/36/e89155ff064d8612214f66d0519fdd0348f4f0db3454854240c29cc7f03a/biocutils-0.3.2.dev1.tar.gz (from https://pypi.org/simple/biocutils/) (requires-python:>=3.9), version: 0.3.2.dev1
2026-01-03T04:52:18,118   Skipping link: No binaries permitted for biocutils: https://files.pythonhosted.org/packages/e9/be/8947071d3e2b15913735043a72a251d13d4b005d90f09a795e54fdebdbed/biocutils-0.3.2-py3-none-any.whl (from https://pypi.org/simple/biocutils/) (requires-python:>=3.9)
2026-01-03T04:52:18,119   Found link https://files.pythonhosted.org/packages/eb/55/0ce26f34744a312f4d473b7459933db4d98bec7b06f5ae78c6d6ab982d61/biocutils-0.3.2.tar.gz (from https://pypi.org/simple/biocutils/) (requires-python:>=3.9), version: 0.3.2
2026-01-03T04:52:18,120   Skipping link: No binaries permitted for biocutils: https://files.pythonhosted.org/packages/85/8c/e254faa2399e9a3caf773dabeafd0f7974380a7846d0142c90e9bc7c47eb/biocutils-0.3.3-py3-none-any.whl (from https://pypi.org/simple/biocutils/) (requires-python:>=3.9)
2026-01-03T04:52:18,121   Found link https://files.pythonhosted.org/packages/d6/82/c6e4524ea687301220ec8d5b466c0e5aa6c29247c5b7128393864cf82988/biocutils-0.3.3.tar.gz (from https://pypi.org/simple/biocutils/) (requires-python:>=3.9), version: 0.3.3
2026-01-03T04:52:18,121 Fetching project page and analyzing links: https://www.piwheels.org/simple/biocutils/
2026-01-03T04:52:18,122 Getting page https://www.piwheels.org/simple/biocutils/
2026-01-03T04:52:18,123 Found index url https://www.piwheels.org/simple
2026-01-03T04:52:18,383 Fetched page https://www.piwheels.org/simple/biocutils/ as text/html
2026-01-03T04:52:18,399   Skipping link: No binaries permitted for biocutils: https://www.piwheels.org/simple/biocutils/biocutils-0.3.2-py3-none-any.whl#sha256=864723142e6fa922aef7e6a529fba5c46c36adb57e3161930fa1731507567630 (from https://www.piwheels.org/simple/biocutils/) (requires-python:>=3.9)
2026-01-03T04:52:18,400   Skipping link: No binaries permitted for biocutils: https://www.piwheels.org/simple/biocutils/biocutils-0.3.2.dev1-py3-none-any.whl#sha256=ab72be7375101851234b6beaf11a1edc6ded62203bf46c916124f4fb1ac47cfc (from https://www.piwheels.org/simple/biocutils/) (requires-python:>=3.9)
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2026-01-03T04:52:18,411   Skipping link: No binaries permitted for biocutils: https://archive1.piwheels.org/simple/biocutils/biocutils-0.1.2-py3-none-any.whl#sha256=330553ba98c11d889d3e38669ea105a54bb2cb5f366229e5551adbd4851ae386 (from https://www.piwheels.org/simple/biocutils/) (requires-python:>=3.8)
2026-01-03T04:52:18,412   Skipping link: No binaries permitted for biocutils: https://archive1.piwheels.org/simple/biocutils/biocutils-0.1.1-py3-none-any.whl#sha256=e34542aaa8fe59518b1e4d9e4e4817d90dae04b7a5b4fae116c3ff29abbddd1d (from https://www.piwheels.org/simple/biocutils/) (requires-python:>=3.8)
2026-01-03T04:52:18,412   Skipping link: No binaries permitted for biocutils: https://archive1.piwheels.org/simple/biocutils/biocutils-0.1.0-py3-none-any.whl#sha256=f95b610d20534b2c8fa73233e65147f29c41f2ce695a6dde3a6fa0f8235511f5 (from https://www.piwheels.org/simple/biocutils/) (requires-python:>=3.8)
2026-01-03T04:52:18,413   Skipping link: No binaries permitted for biocutils: https://archive1.piwheels.org/simple/biocutils/biocutils-0.0.7-py3-none-any.whl#sha256=a443ab0c991aebd5249c0ac238f5c08436cec95c9f60023721e9c64d7f2e0dc3 (from https://www.piwheels.org/simple/biocutils/)
2026-01-03T04:52:18,414   Skipping link: No binaries permitted for biocutils: https://archive1.piwheels.org/simple/biocutils/biocutils-0.0.6-py3-none-any.whl#sha256=acc67f8b6d674fc917b3b659f767c6a6c2bfd61d79cac9ca9bf40bbe9d82e05f (from https://www.piwheels.org/simple/biocutils/)
2026-01-03T04:52:18,415   Skipping link: No binaries permitted for biocutils: https://archive1.piwheels.org/simple/biocutils/biocutils-0.0.5-py3-none-any.whl#sha256=0c4c52db0fdfbd7afa0c77ae6eb1eefc30d09228b2d57bb1b94a93c496b09f61 (from https://www.piwheels.org/simple/biocutils/)
2026-01-03T04:52:18,416   Skipping link: No binaries permitted for biocutils: https://archive1.piwheels.org/simple/biocutils/biocutils-0.0.4-py3-none-any.whl#sha256=150341828dba726d243d2d7e2f667339bd79aad4d739e57fd0bfc075952fb424 (from https://www.piwheels.org/simple/biocutils/)
2026-01-03T04:52:18,417   Skipping link: No binaries permitted for biocutils: https://archive1.piwheels.org/simple/biocutils/biocutils-0.0.3-py3-none-any.whl#sha256=0be924d197b4e8bea234f3c671bc1052b3301537cd48b3b3e47e6995c7c36a19 (from https://www.piwheels.org/simple/biocutils/)
2026-01-03T04:52:18,417   Skipping link: No binaries permitted for biocutils: https://archive1.piwheels.org/simple/biocutils/biocutils-0.0.2-py3-none-any.whl#sha256=7d22a0f780a38f49955bb884da3b497013be3a71854d1dfdb886c12a8a9dd297 (from https://www.piwheels.org/simple/biocutils/)
2026-01-03T04:52:18,418   Skipping link: No binaries permitted for biocutils: https://archive1.piwheels.org/simple/biocutils/biocutils-0.0.1-py3-none-any.whl#sha256=cc3cc12cf8b4082333fbb52b468fe7fe9b5c87bc34cd2d46a9e99219e3acf9b5 (from https://www.piwheels.org/simple/biocutils/)
2026-01-03T04:52:18,419 Skipping link: not a file: https://www.piwheels.org/simple/biocutils/
2026-01-03T04:52:18,420 Skipping link: not a file: https://pypi.org/simple/biocutils/
2026-01-03T04:52:18,465 Given no hashes to check 1 links for project 'biocutils': discarding no candidates
2026-01-03T04:52:18,484 Collecting biocutils==0.3.3
2026-01-03T04:52:18,486   Created temporary directory: /tmp/pip-unpack-5uht3fc2
2026-01-03T04:52:18,695   Downloading biocutils-0.3.3.tar.gz (65 kB)
2026-01-03T04:52:18,940   Added biocutils==0.3.3 from https://files.pythonhosted.org/packages/d6/82/c6e4524ea687301220ec8d5b466c0e5aa6c29247c5b7128393864cf82988/biocutils-0.3.3.tar.gz to build tracker '/tmp/pip-build-tracker-u5lkvz_h'
2026-01-03T04:52:18,946   Created temporary directory: /tmp/pip-build-env-3yq51amn
2026-01-03T04:52:18,951   Installing build dependencies: started
2026-01-03T04:52:18,952   Running command pip subprocess to install build dependencies
2026-01-03T04:52:20,135   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-01-03T04:52:20,720   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-01-03T04:52:20,743   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-01-03T04:52:22,528   Collecting setuptools>=46.1.0
2026-01-03T04:52:22,624     Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB)
2026-01-03T04:52:23,005   Collecting setuptools_scm[toml]>=5
2026-01-03T04:52:23,023     Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-9.2.2-py3-none-any.whl (62 kB)
2026-01-03T04:52:23,213   Collecting packaging>=20
2026-01-03T04:52:23,232     Using cached https://www.piwheels.org/simple/packaging/packaging-25.0-py3-none-any.whl (66 kB)
2026-01-03T04:52:26,248   Installing collected packages: setuptools, packaging, setuptools_scm
2026-01-03T04:52:30,455     Creating /tmp/pip-build-env-3yq51amn/overlay/local/bin
2026-01-03T04:52:30,457     changing mode of /tmp/pip-build-env-3yq51amn/overlay/local/bin/setuptools-scm to 755
2026-01-03T04:52:30,482   Successfully installed packaging-25.0 setuptools-80.9.0 setuptools_scm-9.2.2
2026-01-03T04:52:30,767   Installing build dependencies: finished with status 'done'
2026-01-03T04:52:30,774   Getting requirements to build wheel: started
2026-01-03T04:52:30,775   Running command Getting requirements to build wheel
2026-01-03T04:52:31,439   /tmp/pip-build-env-3yq51amn/overlay/local/lib/python3.11/dist-packages/setuptools_scm/_integration/version_inference.py:51: UserWarning: version of biocutils already set
2026-01-03T04:52:31,440     warnings.warn(self.message)
2026-01-03T04:52:31,479   running egg_info
2026-01-03T04:52:31,487   writing src/biocutils.egg-info/PKG-INFO
2026-01-03T04:52:31,492   writing dependency_links to src/biocutils.egg-info/dependency_links.txt
2026-01-03T04:52:31,496   writing requirements to src/biocutils.egg-info/requires.txt
2026-01-03T04:52:31,497   writing top-level names to src/biocutils.egg-info/top_level.txt
2026-01-03T04:52:31,561   listing git files failed - pretending there aren't any
2026-01-03T04:52:31,566   reading manifest file 'src/biocutils.egg-info/SOURCES.txt'
2026-01-03T04:52:31,575   adding license file 'LICENSE.txt'
2026-01-03T04:52:31,581   writing manifest file 'src/biocutils.egg-info/SOURCES.txt'
2026-01-03T04:52:31,676   Getting requirements to build wheel: finished with status 'done'
2026-01-03T04:52:31,679   Created temporary directory: /tmp/pip-modern-metadata-y8q_47cf
2026-01-03T04:52:31,682   Preparing metadata (pyproject.toml): started
2026-01-03T04:52:31,683   Running command Preparing metadata (pyproject.toml)
2026-01-03T04:52:32,294   /tmp/pip-build-env-3yq51amn/overlay/local/lib/python3.11/dist-packages/setuptools_scm/_integration/version_inference.py:51: UserWarning: version of biocutils already set
2026-01-03T04:52:32,294     warnings.warn(self.message)
2026-01-03T04:52:32,334   running dist_info
2026-01-03T04:52:32,349   creating /tmp/pip-modern-metadata-y8q_47cf/biocutils.egg-info
2026-01-03T04:52:32,350   writing /tmp/pip-modern-metadata-y8q_47cf/biocutils.egg-info/PKG-INFO
2026-01-03T04:52:32,356   writing dependency_links to /tmp/pip-modern-metadata-y8q_47cf/biocutils.egg-info/dependency_links.txt
2026-01-03T04:52:32,360   writing requirements to /tmp/pip-modern-metadata-y8q_47cf/biocutils.egg-info/requires.txt
2026-01-03T04:52:32,361   writing top-level names to /tmp/pip-modern-metadata-y8q_47cf/biocutils.egg-info/top_level.txt
2026-01-03T04:52:32,362   writing manifest file '/tmp/pip-modern-metadata-y8q_47cf/biocutils.egg-info/SOURCES.txt'
2026-01-03T04:52:32,421   listing git files failed - pretending there aren't any
2026-01-03T04:52:32,425   reading manifest file '/tmp/pip-modern-metadata-y8q_47cf/biocutils.egg-info/SOURCES.txt'
2026-01-03T04:52:32,427   adding license file 'LICENSE.txt'
2026-01-03T04:52:32,432   writing manifest file '/tmp/pip-modern-metadata-y8q_47cf/biocutils.egg-info/SOURCES.txt'
2026-01-03T04:52:32,433   creating '/tmp/pip-modern-metadata-y8q_47cf/biocutils-0.3.3.dist-info'
2026-01-03T04:52:32,572   Preparing metadata (pyproject.toml): finished with status 'done'
2026-01-03T04:52:32,577   Source in /tmp/pip-wheel-z_05bccn/biocutils_d29aa46483094cee989ba2f3f51a0e3b has version 0.3.3, which satisfies requirement biocutils==0.3.3 from https://files.pythonhosted.org/packages/d6/82/c6e4524ea687301220ec8d5b466c0e5aa6c29247c5b7128393864cf82988/biocutils-0.3.3.tar.gz
2026-01-03T04:52:32,578   Removed biocutils==0.3.3 from https://files.pythonhosted.org/packages/d6/82/c6e4524ea687301220ec8d5b466c0e5aa6c29247c5b7128393864cf82988/biocutils-0.3.3.tar.gz from build tracker '/tmp/pip-build-tracker-u5lkvz_h'
2026-01-03T04:52:32,584 Created temporary directory: /tmp/pip-unpack-d6l3lg0f
2026-01-03T04:52:32,584 Building wheels for collected packages: biocutils
2026-01-03T04:52:32,589   Created temporary directory: /tmp/pip-wheel-095a0aty
2026-01-03T04:52:32,590   Destination directory: /tmp/pip-wheel-095a0aty
2026-01-03T04:52:32,592   Building wheel for biocutils (pyproject.toml): started
2026-01-03T04:52:32,593   Running command Building wheel for biocutils (pyproject.toml)
2026-01-03T04:52:33,189   /tmp/pip-build-env-3yq51amn/overlay/local/lib/python3.11/dist-packages/setuptools_scm/_integration/version_inference.py:51: UserWarning: version of biocutils already set
2026-01-03T04:52:33,190     warnings.warn(self.message)
2026-01-03T04:52:33,236   running bdist_wheel
2026-01-03T04:52:33,275   running build
2026-01-03T04:52:33,276   running build_py
2026-01-03T04:52:33,288   creating build/lib/biocutils
2026-01-03T04:52:33,290   copying src/biocutils/Names.py -> build/lib/biocutils
2026-01-03T04:52:33,293   copying src/biocutils/assign_rows.py -> build/lib/biocutils
2026-01-03T04:52:33,295   copying src/biocutils/intersect.py -> build/lib/biocutils
2026-01-03T04:52:33,297   copying src/biocutils/normalize_subscript.py -> build/lib/biocutils
2026-01-03T04:52:33,300   copying src/biocutils/subset_sequence.py -> build/lib/biocutils
2026-01-03T04:52:33,302   copying src/biocutils/subset_rows.py -> build/lib/biocutils
2026-01-03T04:52:33,304   copying src/biocutils/get_height.py -> build/lib/biocutils
2026-01-03T04:52:33,306   copying src/biocutils/relaxed_combine_columns.py -> build/lib/biocutils
2026-01-03T04:52:33,308   copying src/biocutils/assign.py -> build/lib/biocutils
2026-01-03T04:52:33,310   copying src/biocutils/is_high_dimensional.py -> build/lib/biocutils
2026-01-03T04:52:33,312   copying src/biocutils/is_list_of_type.py -> build/lib/biocutils
2026-01-03T04:52:33,313   copying src/biocutils/__init__.py -> build/lib/biocutils
2026-01-03T04:52:33,316   copying src/biocutils/table.py -> build/lib/biocutils
2026-01-03T04:52:33,318   copying src/biocutils/is_missing_scalar.py -> build/lib/biocutils
2026-01-03T04:52:33,320   copying src/biocutils/StringList.py -> build/lib/biocutils
2026-01-03T04:52:33,322   copying src/biocutils/IntegerList.py -> build/lib/biocutils
2026-01-03T04:52:33,324   copying src/biocutils/extract_column_names.py -> build/lib/biocutils
2026-01-03T04:52:33,326   copying src/biocutils/combine_columns.py -> build/lib/biocutils
2026-01-03T04:52:33,328   copying src/biocutils/BooleanList.py -> build/lib/biocutils
2026-01-03T04:52:33,330   copying src/biocutils/subset.py -> build/lib/biocutils
2026-01-03T04:52:33,332   copying src/biocutils/reverse_index.py -> build/lib/biocutils
2026-01-03T04:52:33,334   copying src/biocutils/Factor.py -> build/lib/biocutils
2026-01-03T04:52:33,336   copying src/biocutils/combine_rows.py -> build/lib/biocutils
2026-01-03T04:52:33,338   copying src/biocutils/relaxed_combine_rows.py -> build/lib/biocutils
2026-01-03T04:52:33,340   copying src/biocutils/which.py -> build/lib/biocutils
2026-01-03T04:52:33,342   copying src/biocutils/factorize.py -> build/lib/biocutils
2026-01-03T04:52:33,344   copying src/biocutils/map_to_index.py -> build/lib/biocutils
2026-01-03T04:52:33,346   copying src/biocutils/assign_sequence.py -> build/lib/biocutils
2026-01-03T04:52:33,348   copying src/biocutils/print_wrapped_table.py -> build/lib/biocutils
2026-01-03T04:52:33,350   copying src/biocutils/print_truncated.py -> build/lib/biocutils
2026-01-03T04:52:33,353   copying src/biocutils/FloatList.py -> build/lib/biocutils
2026-01-03T04:52:33,355   copying src/biocutils/NamedList.py -> build/lib/biocutils
2026-01-03T04:52:33,358   copying src/biocutils/match.py -> build/lib/biocutils
2026-01-03T04:52:33,360   copying src/biocutils/biocobject.py -> build/lib/biocutils
2026-01-03T04:52:33,362   copying src/biocutils/show_as_cell.py -> build/lib/biocutils
2026-01-03T04:52:33,364   copying src/biocutils/_utils_combine.py -> build/lib/biocutils
2026-01-03T04:52:33,365   copying src/biocutils/combine_sequences.py -> build/lib/biocutils
2026-01-03T04:52:33,367   copying src/biocutils/combine.py -> build/lib/biocutils
2026-01-03T04:52:33,370   copying src/biocutils/convert_to_dense.py -> build/lib/biocutils
2026-01-03T04:52:33,371   copying src/biocutils/package_utils.py -> build/lib/biocutils
2026-01-03T04:52:33,373   copying src/biocutils/union.py -> build/lib/biocutils
2026-01-03T04:52:33,375   copying src/biocutils/extract_row_names.py -> build/lib/biocutils
2026-01-03T04:52:33,377   running egg_info
2026-01-03T04:52:33,392   writing src/biocutils.egg-info/PKG-INFO
2026-01-03T04:52:33,396   writing dependency_links to src/biocutils.egg-info/dependency_links.txt
2026-01-03T04:52:33,399   writing requirements to src/biocutils.egg-info/requires.txt
2026-01-03T04:52:33,400   writing top-level names to src/biocutils.egg-info/top_level.txt
2026-01-03T04:52:33,439   listing git files failed - pretending there aren't any
2026-01-03T04:52:33,443   reading manifest file 'src/biocutils.egg-info/SOURCES.txt'
2026-01-03T04:52:33,450   adding license file 'LICENSE.txt'
2026-01-03T04:52:33,456   writing manifest file 'src/biocutils.egg-info/SOURCES.txt'
2026-01-03T04:52:33,478   installing to build/bdist.linux-armv7l/wheel
2026-01-03T04:52:33,479   running install
2026-01-03T04:52:33,502   running install_lib
2026-01-03T04:52:33,512   creating build/bdist.linux-armv7l/wheel
2026-01-03T04:52:33,515   creating build/bdist.linux-armv7l/wheel/biocutils
2026-01-03T04:52:33,516   copying build/lib/biocutils/Names.py -> build/bdist.linux-armv7l/wheel/./biocutils
2026-01-03T04:52:33,519   copying build/lib/biocutils/assign_rows.py -> build/bdist.linux-armv7l/wheel/./biocutils
2026-01-03T04:52:33,521   copying build/lib/biocutils/intersect.py -> build/bdist.linux-armv7l/wheel/./biocutils
2026-01-03T04:52:33,523   copying build/lib/biocutils/normalize_subscript.py -> build/bdist.linux-armv7l/wheel/./biocutils
2026-01-03T04:52:33,525   copying build/lib/biocutils/subset_sequence.py -> build/bdist.linux-armv7l/wheel/./biocutils
2026-01-03T04:52:33,527   copying build/lib/biocutils/subset_rows.py -> build/bdist.linux-armv7l/wheel/./biocutils
2026-01-03T04:52:33,529   copying build/lib/biocutils/get_height.py -> build/bdist.linux-armv7l/wheel/./biocutils
2026-01-03T04:52:33,531   copying build/lib/biocutils/relaxed_combine_columns.py -> build/bdist.linux-armv7l/wheel/./biocutils
2026-01-03T04:52:33,533   copying build/lib/biocutils/assign.py -> build/bdist.linux-armv7l/wheel/./biocutils
2026-01-03T04:52:33,535   copying build/lib/biocutils/is_high_dimensional.py -> build/bdist.linux-armv7l/wheel/./biocutils
2026-01-03T04:52:33,537   copying build/lib/biocutils/is_list_of_type.py -> build/bdist.linux-armv7l/wheel/./biocutils
2026-01-03T04:52:33,538   copying build/lib/biocutils/__init__.py -> build/bdist.linux-armv7l/wheel/./biocutils
2026-01-03T04:52:33,540   copying build/lib/biocutils/table.py -> build/bdist.linux-armv7l/wheel/./biocutils
2026-01-03T04:52:33,542   copying build/lib/biocutils/is_missing_scalar.py -> build/bdist.linux-armv7l/wheel/./biocutils
2026-01-03T04:52:33,544   copying build/lib/biocutils/StringList.py -> build/bdist.linux-armv7l/wheel/./biocutils
2026-01-03T04:52:33,546   copying build/lib/biocutils/IntegerList.py -> build/bdist.linux-armv7l/wheel/./biocutils
2026-01-03T04:52:33,548   copying build/lib/biocutils/extract_column_names.py -> build/bdist.linux-armv7l/wheel/./biocutils
2026-01-03T04:52:33,550   copying build/lib/biocutils/combine_columns.py -> build/bdist.linux-armv7l/wheel/./biocutils
2026-01-03T04:52:33,552   copying build/lib/biocutils/BooleanList.py -> build/bdist.linux-armv7l/wheel/./biocutils
2026-01-03T04:52:33,554   copying build/lib/biocutils/subset.py -> build/bdist.linux-armv7l/wheel/./biocutils
2026-01-03T04:52:33,556   copying build/lib/biocutils/reverse_index.py -> build/bdist.linux-armv7l/wheel/./biocutils
2026-01-03T04:52:33,558   copying build/lib/biocutils/Factor.py -> build/bdist.linux-armv7l/wheel/./biocutils
2026-01-03T04:52:33,560   copying build/lib/biocutils/combine_rows.py -> build/bdist.linux-armv7l/wheel/./biocutils
2026-01-03T04:52:33,563   copying build/lib/biocutils/relaxed_combine_rows.py -> build/bdist.linux-armv7l/wheel/./biocutils
2026-01-03T04:52:33,564   copying build/lib/biocutils/which.py -> build/bdist.linux-armv7l/wheel/./biocutils
2026-01-03T04:52:33,566   copying build/lib/biocutils/factorize.py -> build/bdist.linux-armv7l/wheel/./biocutils
2026-01-03T04:52:33,568   copying build/lib/biocutils/map_to_index.py -> build/bdist.linux-armv7l/wheel/./biocutils
2026-01-03T04:52:33,570   copying build/lib/biocutils/assign_sequence.py -> build/bdist.linux-armv7l/wheel/./biocutils
2026-01-03T04:52:33,572   copying build/lib/biocutils/print_wrapped_table.py -> build/bdist.linux-armv7l/wheel/./biocutils
2026-01-03T04:52:33,574   copying build/lib/biocutils/print_truncated.py -> build/bdist.linux-armv7l/wheel/./biocutils
2026-01-03T04:52:33,577   copying build/lib/biocutils/FloatList.py -> build/bdist.linux-armv7l/wheel/./biocutils
2026-01-03T04:52:33,579   copying build/lib/biocutils/NamedList.py -> build/bdist.linux-armv7l/wheel/./biocutils
2026-01-03T04:52:33,582   copying build/lib/biocutils/match.py -> build/bdist.linux-armv7l/wheel/./biocutils
2026-01-03T04:52:33,584   copying build/lib/biocutils/biocobject.py -> build/bdist.linux-armv7l/wheel/./biocutils
2026-01-03T04:52:33,586   copying build/lib/biocutils/show_as_cell.py -> build/bdist.linux-armv7l/wheel/./biocutils
2026-01-03T04:52:33,588   copying build/lib/biocutils/_utils_combine.py -> build/bdist.linux-armv7l/wheel/./biocutils
2026-01-03T04:52:33,590   copying build/lib/biocutils/combine_sequences.py -> build/bdist.linux-armv7l/wheel/./biocutils
2026-01-03T04:52:33,592   copying build/lib/biocutils/combine.py -> build/bdist.linux-armv7l/wheel/./biocutils
2026-01-03T04:52:33,594   copying build/lib/biocutils/convert_to_dense.py -> build/bdist.linux-armv7l/wheel/./biocutils
2026-01-03T04:52:33,595   copying build/lib/biocutils/package_utils.py -> build/bdist.linux-armv7l/wheel/./biocutils
2026-01-03T04:52:33,597   copying build/lib/biocutils/union.py -> build/bdist.linux-armv7l/wheel/./biocutils
2026-01-03T04:52:33,600   copying build/lib/biocutils/extract_row_names.py -> build/bdist.linux-armv7l/wheel/./biocutils
2026-01-03T04:52:33,602   running install_egg_info
2026-01-03T04:52:33,614   Copying src/biocutils.egg-info to build/bdist.linux-armv7l/wheel/./biocutils-0.3.3-py3.11.egg-info
2026-01-03T04:52:33,629   running install_scripts
2026-01-03T04:52:33,644   creating build/bdist.linux-armv7l/wheel/biocutils-0.3.3.dist-info/WHEEL
2026-01-03T04:52:33,646   creating '/tmp/pip-wheel-095a0aty/.tmp-8eq5r1qc/biocutils-0.3.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-01-03T04:52:33,649   adding 'biocutils/BooleanList.py'
2026-01-03T04:52:33,653   adding 'biocutils/Factor.py'
2026-01-03T04:52:33,655   adding 'biocutils/FloatList.py'
2026-01-03T04:52:33,656   adding 'biocutils/IntegerList.py'
2026-01-03T04:52:33,659   adding 'biocutils/NamedList.py'
2026-01-03T04:52:33,661   adding 'biocutils/Names.py'
2026-01-03T04:52:33,663   adding 'biocutils/StringList.py'
2026-01-03T04:52:33,664   adding 'biocutils/__init__.py'
2026-01-03T04:52:33,665   adding 'biocutils/_utils_combine.py'
2026-01-03T04:52:33,667   adding 'biocutils/assign.py'
2026-01-03T04:52:33,668   adding 'biocutils/assign_rows.py'
2026-01-03T04:52:33,669   adding 'biocutils/assign_sequence.py'
2026-01-03T04:52:33,671   adding 'biocutils/biocobject.py'
2026-01-03T04:52:33,672   adding 'biocutils/combine.py'
2026-01-03T04:52:33,674   adding 'biocutils/combine_columns.py'
2026-01-03T04:52:33,675   adding 'biocutils/combine_rows.py'
2026-01-03T04:52:33,676   adding 'biocutils/combine_sequences.py'
2026-01-03T04:52:33,678   adding 'biocutils/convert_to_dense.py'
2026-01-03T04:52:33,679   adding 'biocutils/extract_column_names.py'
2026-01-03T04:52:33,680   adding 'biocutils/extract_row_names.py'
2026-01-03T04:52:33,682   adding 'biocutils/factorize.py'
2026-01-03T04:52:33,683   adding 'biocutils/get_height.py'
2026-01-03T04:52:33,684   adding 'biocutils/intersect.py'
2026-01-03T04:52:33,685   adding 'biocutils/is_high_dimensional.py'
2026-01-03T04:52:33,687   adding 'biocutils/is_list_of_type.py'
2026-01-03T04:52:33,688   adding 'biocutils/is_missing_scalar.py'
2026-01-03T04:52:33,689   adding 'biocutils/map_to_index.py'
2026-01-03T04:52:33,690   adding 'biocutils/match.py'
2026-01-03T04:52:33,692   adding 'biocutils/normalize_subscript.py'
2026-01-03T04:52:33,693   adding 'biocutils/package_utils.py'
2026-01-03T04:52:33,695   adding 'biocutils/print_truncated.py'
2026-01-03T04:52:33,696   adding 'biocutils/print_wrapped_table.py'
2026-01-03T04:52:33,697   adding 'biocutils/relaxed_combine_columns.py'
2026-01-03T04:52:33,699   adding 'biocutils/relaxed_combine_rows.py'
2026-01-03T04:52:33,700   adding 'biocutils/reverse_index.py'
2026-01-03T04:52:33,701   adding 'biocutils/show_as_cell.py'
2026-01-03T04:52:33,702   adding 'biocutils/subset.py'
2026-01-03T04:52:33,704   adding 'biocutils/subset_rows.py'
2026-01-03T04:52:33,705   adding 'biocutils/subset_sequence.py'
2026-01-03T04:52:33,706   adding 'biocutils/table.py'
2026-01-03T04:52:33,707   adding 'biocutils/union.py'
2026-01-03T04:52:33,709   adding 'biocutils/which.py'
2026-01-03T04:52:33,711   adding 'biocutils-0.3.3.dist-info/licenses/LICENSE.txt'
2026-01-03T04:52:33,712   adding 'biocutils-0.3.3.dist-info/METADATA'
2026-01-03T04:52:33,713   adding 'biocutils-0.3.3.dist-info/WHEEL'
2026-01-03T04:52:33,714   adding 'biocutils-0.3.3.dist-info/top_level.txt'
2026-01-03T04:52:33,716   adding 'biocutils-0.3.3.dist-info/RECORD'
2026-01-03T04:52:33,718   removing build/bdist.linux-armv7l/wheel
2026-01-03T04:52:33,827   Building wheel for biocutils (pyproject.toml): finished with status 'done'
2026-01-03T04:52:33,832   Created wheel for biocutils: filename=biocutils-0.3.3-py3-none-any.whl size=51155 sha256=ee35277b603db5b6b09c819edb8bed535a73c88bbe654048e1f4362adb4129ff
2026-01-03T04:52:33,833   Stored in directory: /tmp/pip-ephem-wheel-cache-80dr3jg0/wheels/ce/5a/6f/d913f398b7c81b7c8bd12c66b379a3307feafbe952c71095d1
2026-01-03T04:52:33,844 Successfully built biocutils
2026-01-03T04:52:33,849 Removed build tracker: '/tmp/pip-build-tracker-u5lkvz_h'