2026-01-07T16:18:24,243 Created temporary directory: /tmp/pip-ephem-wheel-cache-0cy77ki4
2026-01-07T16:18:24,245 Created temporary directory: /tmp/pip-build-tracker-y_r_mfdx
2026-01-07T16:18:24,246 Initialized build tracking at /tmp/pip-build-tracker-y_r_mfdx
2026-01-07T16:18:24,247 Created build tracker: /tmp/pip-build-tracker-y_r_mfdx
2026-01-07T16:18:24,247 Entered build tracker: /tmp/pip-build-tracker-y_r_mfdx
2026-01-07T16:18:24,248 Created temporary directory: /tmp/pip-wheel-ua1broal
2026-01-07T16:18:24,251 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-01-07T16:18:24,253 Created temporary directory: /tmp/pip-ephem-wheel-cache-y7ma_54r
2026-01-07T16:18:24,275 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-01-07T16:18:24,279 2 location(s) to search for versions of lobster-ai:
2026-01-07T16:18:24,279 * https://pypi.org/simple/lobster-ai/
2026-01-07T16:18:24,279 * https://www.piwheels.org/simple/lobster-ai/
2026-01-07T16:18:24,280 Fetching project page and analyzing links: https://pypi.org/simple/lobster-ai/
2026-01-07T16:18:24,281 Getting page https://pypi.org/simple/lobster-ai/
2026-01-07T16:18:24,282 Found index url https://pypi.org/simple
2026-01-07T16:18:24,512 Fetched page https://pypi.org/simple/lobster-ai/ as application/vnd.pypi.simple.v1+json
2026-01-07T16:18:24,515   Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/25/73/1d1a25243200fd27fb678fc6ba25c4f1675657400551cb051e2f0ba608ec/lobster_ai-0.4.0.6-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11)
2026-01-07T16:18:24,516   Found link https://files.pythonhosted.org/packages/70/bb/d1a5b8fb3972b827f824ed05220013d162bbec24be0d8bffe790e535960b/lobster_ai-0.4.0.6.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.0.6
2026-01-07T16:18:24,516   Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/28/50/4706e55b526417192c7d0734f9300f26cbaa6f3404a258dc5e23932755d8/lobster_ai-0.4.0.7-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11)
2026-01-07T16:18:24,517   Found link https://files.pythonhosted.org/packages/a8/80/ed27ba2c77f7614bf149a697b450c4828da9d56fe5c8d3f0090165bf76fc/lobster_ai-0.4.0.7.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.0.7
2026-01-07T16:18:24,518   Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/d6/d8/90aa06db1b87347873b4ce21d57d45a24c7c9a7f357128242401dacf90ee/lobster_ai-0.4.0.8-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11)
2026-01-07T16:18:24,519   Found link https://files.pythonhosted.org/packages/69/86/8a4b462df9a8118f3de7e0685672bda6cb876c8345b4434923a5c5e941ff/lobster_ai-0.4.0.8.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.0.8
2026-01-07T16:18:24,520   Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/82/31/78340295ff44b67ccc4c5caaa6719063d7474604cd61fa9262fc35d4d956/lobster_ai-0.4.0.9-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11)
2026-01-07T16:18:24,521   Found link https://files.pythonhosted.org/packages/6f/e1/d7ec868a638125f79b3f450e1ecb1b9e75ed7ba1887b51849531a4b362dc/lobster_ai-0.4.0.9.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.0.9
2026-01-07T16:18:24,522   Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/34/e3/df793c9c964fd14f0e798a2b126653fe41689d96f69c0f667eaeaec3b87e/lobster_ai-0.4.1.1-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11)
2026-01-07T16:18:24,523   Found link https://files.pythonhosted.org/packages/3d/08/0884cc34aeec5b95e5d0b58f69dd05ff17ff21a3abfe6a24180066dd8bff/lobster_ai-0.4.1.1.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.1.1
2026-01-07T16:18:24,524 Fetching project page and analyzing links: https://www.piwheels.org/simple/lobster-ai/
2026-01-07T16:18:24,525 Getting page https://www.piwheels.org/simple/lobster-ai/
2026-01-07T16:18:24,526 Found index url https://www.piwheels.org/simple
2026-01-07T16:18:24,682 Fetched page https://www.piwheels.org/simple/lobster-ai/ as text/html
2026-01-07T16:18:24,685   Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.0.9-py3-none-any.whl#sha256=48a46075806c2941d705fa7eb0da81c1c162cc4b62b1bc22b578315363b4de75 (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11)
2026-01-07T16:18:24,685   Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.0.8-py3-none-any.whl#sha256=a66d81b7558824d17ab891c3a592ceb8ee53492f413d9cfdd89bdecd8fd1de85 (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11)
2026-01-07T16:18:24,686   Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.0.7-py3-none-any.whl#sha256=cbee755d3f7ac5e1cd5b65bfe0309faa4acba90c1a6a1b32036010c45f0868d9 (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11)
2026-01-07T16:18:24,686   Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.0.6-py3-none-any.whl#sha256=2d937b84c8a017772656d9ca05d13ea77671ba5c8b1eccb92e4129465a975502 (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11)
2026-01-07T16:18:24,687 Skipping link: not a file: https://www.piwheels.org/simple/lobster-ai/
2026-01-07T16:18:24,688 Skipping link: not a file: https://pypi.org/simple/lobster-ai/
2026-01-07T16:18:24,707 Given no hashes to check 1 links for project 'lobster-ai': discarding no candidates
2026-01-07T16:18:24,725 Collecting lobster-ai==0.4.1.1
2026-01-07T16:18:24,727   Created temporary directory: /tmp/pip-unpack-j0ora3xa
2026-01-07T16:18:24,943   Downloading lobster_ai-0.4.1.1.tar.gz (1.2 MB)
2026-01-07T16:18:25,932   Added lobster-ai==0.4.1.1 from https://files.pythonhosted.org/packages/3d/08/0884cc34aeec5b95e5d0b58f69dd05ff17ff21a3abfe6a24180066dd8bff/lobster_ai-0.4.1.1.tar.gz to build tracker '/tmp/pip-build-tracker-y_r_mfdx'
2026-01-07T16:18:25,941   Created temporary directory: /tmp/pip-build-env-6pfnkg2i
2026-01-07T16:18:25,946   Installing build dependencies: started
2026-01-07T16:18:25,948   Running command pip subprocess to install build dependencies
2026-01-07T16:18:27,080   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-01-07T16:18:27,737   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-01-07T16:18:27,761   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-01-07T16:18:29,483   Collecting setuptools>=65.0
2026-01-07T16:18:29,580     Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB)
2026-01-07T16:18:29,848   Collecting wheel
2026-01-07T16:18:29,864     Using cached https://www.piwheels.org/simple/wheel/wheel-0.45.1-py3-none-any.whl (72 kB)
2026-01-07T16:18:32,888   Installing collected packages: wheel, setuptools
2026-01-07T16:18:33,136     Creating /tmp/pip-build-env-6pfnkg2i/overlay/local/bin
2026-01-07T16:18:33,138     changing mode of /tmp/pip-build-env-6pfnkg2i/overlay/local/bin/wheel to 755
2026-01-07T16:18:36,826   Successfully installed setuptools-80.9.0 wheel-0.45.1
2026-01-07T16:18:37,103   Installing build dependencies: finished with status 'done'
2026-01-07T16:18:37,110   Getting requirements to build wheel: started
2026-01-07T16:18:37,111   Running command Getting requirements to build wheel
2026-01-07T16:18:37,808   /tmp/pip-build-env-6pfnkg2i/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `license` overwritten by `pyproject.toml`
2026-01-07T16:18:37,808     corresp(dist, value, root_dir)
2026-01-07T16:18:37,809   /tmp/pip-build-env-6pfnkg2i/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies)
2026-01-07T16:18:37,809     corresp(dist, value, root_dir)
2026-01-07T16:18:37,810   /tmp/pip-build-env-6pfnkg2i/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `extras_require` overwritten in `pyproject.toml` (optional-dependencies)
2026-01-07T16:18:37,810     corresp(dist, value, root_dir)
2026-01-07T16:18:37,918   running egg_info
2026-01-07T16:18:37,925   writing lobster_ai.egg-info/PKG-INFO
2026-01-07T16:18:37,956   writing dependency_links to lobster_ai.egg-info/dependency_links.txt
2026-01-07T16:18:37,958   writing entry points to lobster_ai.egg-info/entry_points.txt
2026-01-07T16:18:37,977   writing requirements to lobster_ai.egg-info/requires.txt
2026-01-07T16:18:37,979   writing top-level names to lobster_ai.egg-info/top_level.txt
2026-01-07T16:18:38,129   reading manifest file 'lobster_ai.egg-info/SOURCES.txt'
2026-01-07T16:18:38,145   adding license file 'LICENSE'
2026-01-07T16:18:38,159   writing manifest file 'lobster_ai.egg-info/SOURCES.txt'
2026-01-07T16:18:38,260   Getting requirements to build wheel: finished with status 'done'
2026-01-07T16:18:38,264   Created temporary directory: /tmp/pip-modern-metadata-r34hiolp
2026-01-07T16:18:38,266   Preparing metadata (pyproject.toml): started
2026-01-07T16:18:38,267   Running command Preparing metadata (pyproject.toml)
2026-01-07T16:18:38,893   /tmp/pip-build-env-6pfnkg2i/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `license` overwritten by `pyproject.toml`
2026-01-07T16:18:38,894     corresp(dist, value, root_dir)
2026-01-07T16:18:38,894   /tmp/pip-build-env-6pfnkg2i/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies)
2026-01-07T16:18:38,895     corresp(dist, value, root_dir)
2026-01-07T16:18:38,896   /tmp/pip-build-env-6pfnkg2i/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `extras_require` overwritten in `pyproject.toml` (optional-dependencies)
2026-01-07T16:18:38,896     corresp(dist, value, root_dir)
2026-01-07T16:18:38,999   running dist_info
2026-01-07T16:18:39,011   creating /tmp/pip-modern-metadata-r34hiolp/lobster_ai.egg-info
2026-01-07T16:18:39,012   writing /tmp/pip-modern-metadata-r34hiolp/lobster_ai.egg-info/PKG-INFO
2026-01-07T16:18:39,043   writing dependency_links to /tmp/pip-modern-metadata-r34hiolp/lobster_ai.egg-info/dependency_links.txt
2026-01-07T16:18:39,045   writing entry points to /tmp/pip-modern-metadata-r34hiolp/lobster_ai.egg-info/entry_points.txt
2026-01-07T16:18:39,064   writing requirements to /tmp/pip-modern-metadata-r34hiolp/lobster_ai.egg-info/requires.txt
2026-01-07T16:18:39,065   writing top-level names to /tmp/pip-modern-metadata-r34hiolp/lobster_ai.egg-info/top_level.txt
2026-01-07T16:18:39,067   writing manifest file '/tmp/pip-modern-metadata-r34hiolp/lobster_ai.egg-info/SOURCES.txt'
2026-01-07T16:18:39,202   reading manifest file '/tmp/pip-modern-metadata-r34hiolp/lobster_ai.egg-info/SOURCES.txt'
2026-01-07T16:18:39,204   adding license file 'LICENSE'
2026-01-07T16:18:39,214   writing manifest file '/tmp/pip-modern-metadata-r34hiolp/lobster_ai.egg-info/SOURCES.txt'
2026-01-07T16:18:39,216   creating '/tmp/pip-modern-metadata-r34hiolp/lobster_ai-0.4.1.1.dist-info'
2026-01-07T16:18:39,348   Preparing metadata (pyproject.toml): finished with status 'done'
2026-01-07T16:18:39,355   Source in /tmp/pip-wheel-ua1broal/lobster-ai_c553f6a31c1f476fb28f6ba204e93a00 has version 0.4.1.1, which satisfies requirement lobster-ai==0.4.1.1 from https://files.pythonhosted.org/packages/3d/08/0884cc34aeec5b95e5d0b58f69dd05ff17ff21a3abfe6a24180066dd8bff/lobster_ai-0.4.1.1.tar.gz
2026-01-07T16:18:39,356   Removed lobster-ai==0.4.1.1 from https://files.pythonhosted.org/packages/3d/08/0884cc34aeec5b95e5d0b58f69dd05ff17ff21a3abfe6a24180066dd8bff/lobster_ai-0.4.1.1.tar.gz from build tracker '/tmp/pip-build-tracker-y_r_mfdx'
2026-01-07T16:18:39,366 Created temporary directory: /tmp/pip-unpack-ao7_fb92
2026-01-07T16:18:39,367 Building wheels for collected packages: lobster-ai
2026-01-07T16:18:39,372   Created temporary directory: /tmp/pip-wheel-kqxo0vsk
2026-01-07T16:18:39,373   Destination directory: /tmp/pip-wheel-kqxo0vsk
2026-01-07T16:18:39,375   Building wheel for lobster-ai (pyproject.toml): started
2026-01-07T16:18:39,376   Running command Building wheel for lobster-ai (pyproject.toml)
2026-01-07T16:18:39,995   /tmp/pip-build-env-6pfnkg2i/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `license` overwritten by `pyproject.toml`
2026-01-07T16:18:39,995     corresp(dist, value, root_dir)
2026-01-07T16:18:39,995   /tmp/pip-build-env-6pfnkg2i/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies)
2026-01-07T16:18:39,996     corresp(dist, value, root_dir)
2026-01-07T16:18:39,997   /tmp/pip-build-env-6pfnkg2i/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `extras_require` overwritten in `pyproject.toml` (optional-dependencies)
2026-01-07T16:18:39,997     corresp(dist, value, root_dir)
2026-01-07T16:18:40,088   running bdist_wheel
2026-01-07T16:18:40,109   running build
2026-01-07T16:18:40,109   running build_py
2026-01-07T16:18:40,116   creating build/lib/lobster
2026-01-07T16:18:40,118   copying lobster/version.py -> build/lib/lobster
2026-01-07T16:18:40,120   copying lobster/_version.py -> build/lib/lobster
2026-01-07T16:18:40,122   copying lobster/__main__.py -> build/lib/lobster
2026-01-07T16:18:40,124   copying lobster/cli.py -> build/lib/lobster
2026-01-07T16:18:40,133   copying lobster/main.py -> build/lib/lobster
2026-01-07T16:18:40,136   creating build/lib/lobster/config
2026-01-07T16:18:40,137   copying lobster/config/supervisor_config.py -> build/lib/lobster/config
2026-01-07T16:18:40,140   copying lobster/config/agent_config.py -> build/lib/lobster/config
2026-01-07T16:18:40,143   copying lobster/config/ollama_service.py -> build/lib/lobster/config
2026-01-07T16:18:40,145   copying lobster/config/workspace_config.py -> build/lib/lobster/config
2026-01-07T16:18:40,147   copying lobster/config/base_config.py -> build/lib/lobster/config
2026-01-07T16:18:40,149   copying lobster/config/llm_factory.py -> build/lib/lobster/config
2026-01-07T16:18:40,152   copying lobster/config/global_config.py -> build/lib/lobster/config
2026-01-07T16:18:40,154   copying lobster/config/provider_setup.py -> build/lib/lobster/config
2026-01-07T16:18:40,157   copying lobster/config/config_manager.py -> build/lib/lobster/config
2026-01-07T16:18:40,159   copying lobster/config/agent_registry.py -> build/lib/lobster/config
2026-01-07T16:18:40,162   copying lobster/config/model_service.py -> build/lib/lobster/config
2026-01-07T16:18:40,164   copying lobster/config/__init__.py -> build/lib/lobster/config
2026-01-07T16:18:40,166   copying lobster/config/settings.py -> build/lib/lobster/config
2026-01-07T16:18:40,169   copying lobster/config/agent_capabilities.py -> build/lib/lobster/config
2026-01-07T16:18:40,172   copying lobster/config/subscription_tiers.py -> build/lib/lobster/config
2026-01-07T16:18:40,174   copying lobster/config/constants.py -> build/lib/lobster/config
2026-01-07T16:18:40,177   creating build/lib/lobster/utils
2026-01-07T16:18:40,178   copying lobster/utils/system.py -> build/lib/lobster/utils
2026-01-07T16:18:40,180   copying lobster/utils/callbacks.py -> build/lib/lobster/utils
2026-01-07T16:18:40,183   copying lobster/utils/json_extractor.py -> build/lib/lobster/utils
2026-01-07T16:18:40,186   copying lobster/utils/file_analyzer.py -> build/lib/lobster/utils
2026-01-07T16:18:40,189   copying lobster/utils/__init__.py -> build/lib/lobster/utils
2026-01-07T16:18:40,191   copying lobster/utils/ssl_utils.py -> build/lib/lobster/utils
2026-01-07T16:18:40,193   copying lobster/utils/error_handlers.py -> build/lib/lobster/utils
2026-01-07T16:18:40,196   copying lobster/utils/file_naming.py -> build/lib/lobster/utils
2026-01-07T16:18:40,199   copying lobster/utils/logger.py -> build/lib/lobster/utils
2026-01-07T16:18:40,201   copying lobster/utils/deviance.py -> build/lib/lobster/utils
2026-01-07T16:18:40,204   copying lobster/utils/progress_wrapper.py -> build/lib/lobster/utils
2026-01-07T16:18:40,207   creating build/lib/lobster/cli_internal
2026-01-07T16:18:40,209   copying lobster/cli_internal/__init__.py -> build/lib/lobster/cli_internal
2026-01-07T16:18:40,212   creating build/lib/lobster/lobster_cloud
2026-01-07T16:18:40,213   copying lobster/lobster_cloud/client.py -> build/lib/lobster/lobster_cloud
2026-01-07T16:18:40,216   copying lobster/lobster_cloud/__init__.py -> build/lib/lobster/lobster_cloud
2026-01-07T16:18:40,219   creating build/lib/lobster/tools
2026-01-07T16:18:40,220   copying lobster/tools/expert_handoff_manager.py -> build/lib/lobster/tools
2026-01-07T16:18:40,223   copying lobster/tools/gpu_detector.py -> build/lib/lobster/tools
2026-01-07T16:18:40,226   copying lobster/tools/geo_parser.py -> build/lib/lobster/tools
2026-01-07T16:18:40,228   copying lobster/tools/download_orchestrator.py -> build/lib/lobster/tools
2026-01-07T16:18:40,231   copying lobster/tools/workflow_tracker.py -> build/lib/lobster/tools
2026-01-07T16:18:40,234   copying lobster/tools/todo_tools.py -> build/lib/lobster/tools
2026-01-07T16:18:40,237   copying lobster/tools/custom_code_tool.py -> build/lib/lobster/tools
2026-01-07T16:18:40,240   copying lobster/tools/rate_limiter.py -> build/lib/lobster/tools
2026-01-07T16:18:40,243   copying lobster/tools/expert_handoff_patterns.py -> build/lib/lobster/tools
2026-01-07T16:18:40,246   copying lobster/tools/pipeline_strategy.py -> build/lib/lobster/tools
2026-01-07T16:18:40,249   copying lobster/tools/geo_downloader.py -> build/lib/lobster/tools
2026-01-07T16:18:40,251   copying lobster/tools/__init__.py -> build/lib/lobster/tools
2026-01-07T16:18:40,253   copying lobster/tools/enhanced_handoff_tool.py -> build/lib/lobster/tools
2026-01-07T16:18:40,256   copying lobster/tools/handoff_tool.py -> build/lib/lobster/tools
2026-01-07T16:18:40,259   copying lobster/tools/url_transforms.py -> build/lib/lobster/tools
2026-01-07T16:18:40,261   copying lobster/tools/workspace_tool.py -> build/lib/lobster/tools
2026-01-07T16:18:40,267   creating build/lib/lobster/core
2026-01-07T16:18:40,269   copying lobster/core/notebook_validator.py -> build/lib/lobster/core
2026-01-07T16:18:40,272   copying lobster/core/ir_coverage.py -> build/lib/lobster/core
2026-01-07T16:18:40,275   copying lobster/core/exceptions.py -> build/lib/lobster/core
2026-01-07T16:18:40,278   copying lobster/core/plugin_loader.py -> build/lib/lobster/core
2026-01-07T16:18:40,281   copying lobster/core/provenance.py -> build/lib/lobster/core
2026-01-07T16:18:40,283   copying lobster/core/client.py -> build/lib/lobster/core
2026-01-07T16:18:40,291   copying lobster/core/data_manager_v2.py -> build/lib/lobster/core
2026-01-07T16:18:40,296   copying lobster/core/publication_queue.py -> build/lib/lobster/core
2026-01-07T16:18:40,299   copying lobster/core/plot_manager.py -> build/lib/lobster/core
2026-01-07T16:18:40,302   copying lobster/core/archive_utils.py -> build/lib/lobster/core
2026-01-07T16:18:40,306   copying lobster/core/__init__.py -> build/lib/lobster/core
2026-01-07T16:18:40,308   copying lobster/core/analysis_ir.py -> build/lib/lobster/core
2026-01-07T16:18:40,311   copying lobster/core/config_resolver.py -> build/lib/lobster/core
2026-01-07T16:18:40,314   copying lobster/core/notebook_exporter.py -> build/lib/lobster/core
2026-01-07T16:18:40,317   copying lobster/core/license_manager.py -> build/lib/lobster/core
2026-01-07T16:18:40,320   copying lobster/core/component_registry.py -> build/lib/lobster/core
2026-01-07T16:18:40,322   copying lobster/core/notebook_executor.py -> build/lib/lobster/core
2026-01-07T16:18:40,325   copying lobster/core/download_queue.py -> build/lib/lobster/core
2026-01-07T16:18:40,327   copying lobster/core/queue_storage.py -> build/lib/lobster/core
2026-01-07T16:18:40,329   copying lobster/core/ris_parser.py -> build/lib/lobster/core
2026-01-07T16:18:40,331   copying lobster/core/workspace.py -> build/lib/lobster/core
2026-01-07T16:18:40,334   creating build/lib/lobster/ui
2026-01-07T16:18:40,335   copying lobster/ui/console_manager.py -> build/lib/lobster/ui
2026-01-07T16:18:40,337   copying lobster/ui/progress_manager.py -> build/lib/lobster/ui
2026-01-07T16:18:40,340   copying lobster/ui/live_dashboard.py -> build/lib/lobster/ui
2026-01-07T16:18:40,342   copying lobster/ui/themes.py -> build/lib/lobster/ui
2026-01-07T16:18:40,345   copying lobster/ui/os_app.py -> build/lib/lobster/ui
2026-01-07T16:18:40,347   copying lobster/ui/__init__.py -> build/lib/lobster/ui
2026-01-07T16:18:40,349   copying lobster/ui/commands.py -> build/lib/lobster/ui
2026-01-07T16:18:40,352   creating build/lib/lobster/services
2026-01-07T16:18:40,353   copying lobster/services/__init__.py -> build/lib/lobster/services
2026-01-07T16:18:40,355   creating build/lib/lobster/agents
2026-01-07T16:18:40,356   copying lobster/agents/draw_graph.py -> build/lib/lobster/agents
2026-01-07T16:18:40,358   copying lobster/agents/graph.py -> build/lib/lobster/agents
2026-01-07T16:18:40,361   copying lobster/agents/data_expert_assistant.py -> build/lib/lobster/agents
2026-01-07T16:18:40,364   copying lobster/agents/data_expert.py -> build/lib/lobster/agents
2026-01-07T16:18:40,367   copying lobster/agents/state.py -> build/lib/lobster/agents
2026-01-07T16:18:40,370   copying lobster/agents/__init__.py -> build/lib/lobster/agents
2026-01-07T16:18:40,372   copying lobster/agents/research_agent.py -> build/lib/lobster/agents
2026-01-07T16:18:40,376   copying lobster/agents/visualization_expert.py -> build/lib/lobster/agents
2026-01-07T16:18:40,379   copying lobster/agents/supervisor.py -> build/lib/lobster/agents
2026-01-07T16:18:40,383   creating build/lib/lobster/config/providers
2026-01-07T16:18:40,384   copying lobster/config/providers/ollama_provider.py -> build/lib/lobster/config/providers
2026-01-07T16:18:40,387   copying lobster/config/providers/bedrock_provider.py -> build/lib/lobster/config/providers
2026-01-07T16:18:40,389   copying lobster/config/providers/__init__.py -> build/lib/lobster/config/providers
2026-01-07T16:18:40,391   copying lobster/config/providers/registry.py -> build/lib/lobster/config/providers
2026-01-07T16:18:40,393   copying lobster/config/providers/gemini_provider.py -> build/lib/lobster/config/providers
2026-01-07T16:18:40,396   copying lobster/config/providers/base_provider.py -> build/lib/lobster/config/providers
2026-01-07T16:18:40,398   copying lobster/config/providers/anthropic_provider.py -> build/lib/lobster/config/providers
2026-01-07T16:18:40,401   creating build/lib/lobster/cli_internal/utils
2026-01-07T16:18:40,402   copying lobster/cli_internal/utils/path_resolution.py -> build/lib/lobster/cli_internal/utils
2026-01-07T16:18:40,405   copying lobster/cli_internal/utils/__init__.py -> build/lib/lobster/cli_internal/utils
2026-01-07T16:18:40,407   creating build/lib/lobster/cli_internal/commands
2026-01-07T16:18:40,408   copying lobster/cli_internal/commands/output_adapter.py -> build/lib/lobster/cli_internal/commands
2026-01-07T16:18:40,411   copying lobster/cli_internal/commands/__init__.py -> build/lib/lobster/cli_internal/commands
2026-01-07T16:18:40,414   creating build/lib/lobster/cli_internal/commands/heavy
2026-01-07T16:18:40,415   copying lobster/cli_internal/commands/heavy/visualization_commands.py -> build/lib/lobster/cli_internal/commands/heavy
2026-01-07T16:18:40,418   copying lobster/cli_internal/commands/heavy/__init__.py -> build/lib/lobster/cli_internal/commands/heavy
2026-01-07T16:18:40,419   copying lobster/cli_internal/commands/heavy/modality_commands.py -> build/lib/lobster/cli_internal/commands/heavy
2026-01-07T16:18:40,422   copying lobster/cli_internal/commands/heavy/data_commands.py -> build/lib/lobster/cli_internal/commands/heavy
2026-01-07T16:18:40,425   creating build/lib/lobster/cli_internal/commands/light
2026-01-07T16:18:40,426   copying lobster/cli_internal/commands/light/workspace_commands.py -> build/lib/lobster/cli_internal/commands/light
2026-01-07T16:18:40,429   copying lobster/cli_internal/commands/light/__init__.py -> build/lib/lobster/cli_internal/commands/light
2026-01-07T16:18:40,430   copying lobster/cli_internal/commands/light/pipeline_commands.py -> build/lib/lobster/cli_internal/commands/light
2026-01-07T16:18:40,433   copying lobster/cli_internal/commands/light/queue_commands.py -> build/lib/lobster/cli_internal/commands/light
2026-01-07T16:18:40,436   copying lobster/cli_internal/commands/light/config_commands.py -> build/lib/lobster/cli_internal/commands/light
2026-01-07T16:18:40,438   copying lobster/cli_internal/commands/light/metadata_commands.py -> build/lib/lobster/cli_internal/commands/light
2026-01-07T16:18:40,441   copying lobster/cli_internal/commands/light/file_commands.py -> build/lib/lobster/cli_internal/commands/light
2026-01-07T16:18:40,445   creating build/lib/lobster/tools/providers
2026-01-07T16:18:40,446   copying lobster/tools/providers/biorxiv_medrxiv_provider.py -> build/lib/lobster/tools/providers
2026-01-07T16:18:40,449   copying lobster/tools/providers/geo_provider.py -> build/lib/lobster/tools/providers
2026-01-07T16:18:40,453   copying lobster/tools/providers/biorxiv_medrxiv_config.py -> build/lib/lobster/tools/providers
2026-01-07T16:18:40,455   copying lobster/tools/providers/organism_enum.py -> build/lib/lobster/tools/providers
2026-01-07T16:18:40,457   copying lobster/tools/providers/publication_resolver.py -> build/lib/lobster/tools/providers
2026-01-07T16:18:40,460   copying lobster/tools/providers/pride_provider.py -> build/lib/lobster/tools/providers
2026-01-07T16:18:40,463   copying lobster/tools/providers/webpage_provider.py -> build/lib/lobster/tools/providers
2026-01-07T16:18:40,466   copying lobster/tools/providers/massive_provider.py -> build/lib/lobster/tools/providers
2026-01-07T16:18:40,469   copying lobster/tools/providers/ncbi_query_builder.py -> build/lib/lobster/tools/providers
2026-01-07T16:18:40,471   copying lobster/tools/providers/__init__.py -> build/lib/lobster/tools/providers
2026-01-07T16:18:40,473   copying lobster/tools/providers/pdb_provider.py -> build/lib/lobster/tools/providers
2026-01-07T16:18:40,476   copying lobster/tools/providers/pmc_provider.py -> build/lib/lobster/tools/providers
2026-01-07T16:18:40,479   copying lobster/tools/providers/biopython_entrez_wrapper.py -> build/lib/lobster/tools/providers
2026-01-07T16:18:40,482   copying lobster/tools/providers/abstract_provider.py -> build/lib/lobster/tools/providers
2026-01-07T16:18:40,484   copying lobster/tools/providers/pride_normalizer.py -> build/lib/lobster/tools/providers
2026-01-07T16:18:40,487   copying lobster/tools/providers/geo_utils.py -> build/lib/lobster/tools/providers
2026-01-07T16:18:40,489   copying lobster/tools/providers/structure_provider.py -> build/lib/lobster/tools/providers
2026-01-07T16:18:40,492   copying lobster/tools/providers/base_provider.py -> build/lib/lobster/tools/providers
2026-01-07T16:18:40,495   copying lobster/tools/providers/pubmed_provider.py -> build/lib/lobster/tools/providers
2026-01-07T16:18:40,498   copying lobster/tools/providers/provider_registry.py -> build/lib/lobster/tools/providers
2026-01-07T16:18:40,501   copying lobster/tools/providers/sra_provider.py -> build/lib/lobster/tools/providers
2026-01-07T16:18:40,504   creating build/lib/lobster/tools/archive
2026-01-07T16:18:40,505   copying lobster/tools/archive/unified_content_service.py -> build/lib/lobster/tools/archive
2026-01-07T16:18:40,508   copying lobster/tools/archive/publication_service.py -> build/lib/lobster/tools/archive
2026-01-07T16:18:40,511   creating build/lib/lobster/core/identifiers
2026-01-07T16:18:40,512   copying lobster/core/identifiers/accession_resolver.py -> build/lib/lobster/core/identifiers
2026-01-07T16:18:40,515   copying lobster/core/identifiers/__init__.py -> build/lib/lobster/core/identifiers
2026-01-07T16:18:40,517   creating build/lib/lobster/core/backends
2026-01-07T16:18:40,518   copying lobster/core/backends/base.py -> build/lib/lobster/core/backends
2026-01-07T16:18:40,521   copying lobster/core/backends/h5ad_backend.py -> build/lib/lobster/core/backends
2026-01-07T16:18:40,524   copying lobster/core/backends/__init__.py -> build/lib/lobster/core/backends
2026-01-07T16:18:40,526   copying lobster/core/backends/mudata_backend.py -> build/lib/lobster/core/backends
2026-01-07T16:18:40,530   creating build/lib/lobster/core/adapters
2026-01-07T16:18:40,531   copying lobster/core/adapters/base.py -> build/lib/lobster/core/adapters
2026-01-07T16:18:40,535   copying lobster/core/adapters/pseudobulk_adapter.py -> build/lib/lobster/core/adapters
2026-01-07T16:18:40,538   copying lobster/core/adapters/proteomics_adapter.py -> build/lib/lobster/core/adapters
2026-01-07T16:18:40,540   copying lobster/core/adapters/__init__.py -> build/lib/lobster/core/adapters
2026-01-07T16:18:40,542   copying lobster/core/adapters/protein_structure_adapter.py -> build/lib/lobster/core/adapters
2026-01-07T16:18:40,545   copying lobster/core/adapters/transcriptomics_adapter.py -> build/lib/lobster/core/adapters
2026-01-07T16:18:40,549   creating build/lib/lobster/core/schemas
2026-01-07T16:18:40,550   copying lobster/core/schemas/database_registry.py -> build/lib/lobster/core/schemas
2026-01-07T16:18:40,553   copying lobster/core/schemas/export_schemas.py -> build/lib/lobster/core/schemas
2026-01-07T16:18:40,557   copying lobster/core/schemas/validation.py -> build/lib/lobster/core/schemas
2026-01-07T16:18:40,559   copying lobster/core/schemas/transcriptomics.py -> build/lib/lobster/core/schemas
2026-01-07T16:18:40,563   copying lobster/core/schemas/metagenomics.py -> build/lib/lobster/core/schemas
2026-01-07T16:18:40,566   copying lobster/core/schemas/metabolomics.py -> build/lib/lobster/core/schemas
2026-01-07T16:18:40,569   copying lobster/core/schemas/publication_queue.py -> build/lib/lobster/core/schemas
2026-01-07T16:18:40,572   copying lobster/core/schemas/protein_structure.py -> build/lib/lobster/core/schemas
2026-01-07T16:18:40,575   copying lobster/core/schemas/download_urls.py -> build/lib/lobster/core/schemas
2026-01-07T16:18:40,578   copying lobster/core/schemas/__init__.py -> build/lib/lobster/core/schemas
2026-01-07T16:18:40,580   copying lobster/core/schemas/sra.py -> build/lib/lobster/core/schemas
2026-01-07T16:18:40,583   copying lobster/core/schemas/database_mappings.py -> build/lib/lobster/core/schemas
2026-01-07T16:18:40,586   copying lobster/core/schemas/download_queue.py -> build/lib/lobster/core/schemas
2026-01-07T16:18:40,589   copying lobster/core/schemas/proteomics.py -> build/lib/lobster/core/schemas
2026-01-07T16:18:40,593   creating build/lib/lobster/core/utils
2026-01-07T16:18:40,594   copying lobster/core/utils/h5ad_utils.py -> build/lib/lobster/core/utils
2026-01-07T16:18:40,597   copying lobster/core/utils/__init__.py -> build/lib/lobster/core/utils
2026-01-07T16:18:40,600   creating build/lib/lobster/core/interfaces
2026-01-07T16:18:40,601   copying lobster/core/interfaces/adapter.py -> build/lib/lobster/core/interfaces
2026-01-07T16:18:40,604   copying lobster/core/interfaces/validator.py -> build/lib/lobster/core/interfaces
2026-01-07T16:18:40,607   copying lobster/core/interfaces/base_client.py -> build/lib/lobster/core/interfaces
2026-01-07T16:18:40,610   copying lobster/core/interfaces/backend.py -> build/lib/lobster/core/interfaces
2026-01-07T16:18:40,612   copying lobster/core/interfaces/__init__.py -> build/lib/lobster/core/interfaces
2026-01-07T16:18:40,615   copying lobster/core/interfaces/download_service.py -> build/lib/lobster/core/interfaces
2026-01-07T16:18:40,618   creating build/lib/lobster/ui/widgets
2026-01-07T16:18:40,620   copying lobster/ui/widgets/query_prompt.py -> build/lib/lobster/ui/widgets
2026-01-07T16:18:40,622   copying lobster/ui/widgets/error_modal.py -> build/lib/lobster/ui/widgets
2026-01-07T16:18:40,625   copying lobster/ui/widgets/chat_message.py -> build/lib/lobster/ui/widgets
2026-01-07T16:18:40,627   copying lobster/ui/widgets/queue_status_bar.py -> build/lib/lobster/ui/widgets
2026-01-07T16:18:40,630   copying lobster/ui/widgets/activity_log.py -> build/lib/lobster/ui/widgets
2026-01-07T16:18:40,632   copying lobster/ui/widgets/results_display.py -> build/lib/lobster/ui/widgets
2026-01-07T16:18:40,634   copying lobster/ui/widgets/connections_panel.py -> build/lib/lobster/ui/widgets
2026-01-07T16:18:40,637   copying lobster/ui/widgets/data_hub.py -> build/lib/lobster/ui/widgets
2026-01-07T16:18:40,640   copying lobster/ui/widgets/token_usage_panel.py -> build/lib/lobster/ui/widgets
2026-01-07T16:18:40,642   copying lobster/ui/widgets/__init__.py -> build/lib/lobster/ui/widgets
2026-01-07T16:18:40,644   copying lobster/ui/widgets/agents_panel.py -> build/lib/lobster/ui/widgets
2026-01-07T16:18:40,646   copying lobster/ui/widgets/adapters_panel.py -> build/lib/lobster/ui/widgets
2026-01-07T16:18:40,648   copying lobster/ui/widgets/plot_preview.py -> build/lib/lobster/ui/widgets
2026-01-07T16:18:40,651   copying lobster/ui/widgets/queue_panel.py -> build/lib/lobster/ui/widgets
2026-01-07T16:18:40,653   copying lobster/ui/widgets/system_info.py -> build/lib/lobster/ui/widgets
2026-01-07T16:18:40,655   copying lobster/ui/widgets/modality_list.py -> build/lib/lobster/ui/widgets
2026-01-07T16:18:40,658   copying lobster/ui/widgets/status_bar.py -> build/lib/lobster/ui/widgets
2026-01-07T16:18:40,660   creating build/lib/lobster/ui/callbacks
2026-01-07T16:18:40,661   copying lobster/ui/callbacks/__init__.py -> build/lib/lobster/ui/callbacks
2026-01-07T16:18:40,664   copying lobster/ui/callbacks/textual_callback.py -> build/lib/lobster/ui/callbacks
2026-01-07T16:18:40,667   creating build/lib/lobster/ui/screens
2026-01-07T16:18:40,668   copying lobster/ui/screens/analysis_screen.py -> build/lib/lobster/ui/screens
2026-01-07T16:18:40,671   copying lobster/ui/screens/__init__.py -> build/lib/lobster/ui/screens
2026-01-07T16:18:40,673   creating build/lib/lobster/ui/formatters
2026-01-07T16:18:40,674   copying lobster/ui/formatters/__init__.py -> build/lib/lobster/ui/formatters
2026-01-07T16:18:40,676   creating build/lib/lobster/ui/services
2026-01-07T16:18:40,677   copying lobster/ui/services/__init__.py -> build/lib/lobster/ui/services
2026-01-07T16:18:40,679   copying lobster/ui/services/error_service.py -> build/lib/lobster/ui/services
2026-01-07T16:18:40,682   creating build/lib/lobster/ui/components
2026-01-07T16:18:40,683   copying lobster/ui/components/status_display.py -> build/lib/lobster/ui/components
2026-01-07T16:18:40,686   copying lobster/ui/components/multi_progress.py -> build/lib/lobster/ui/components
2026-01-07T16:18:40,689   copying lobster/ui/components/file_tree.py -> build/lib/lobster/ui/components
2026-01-07T16:18:40,692   copying lobster/ui/components/parallel_workers_progress.py -> build/lib/lobster/ui/components
2026-01-07T16:18:40,694   copying lobster/ui/components/__init__.py -> build/lib/lobster/ui/components
2026-01-07T16:18:40,697   creating build/lib/lobster/services/data_management
2026-01-07T16:18:40,698   copying lobster/services/data_management/concatenation_service.py -> build/lib/lobster/services/data_management
2026-01-07T16:18:40,701   copying lobster/services/data_management/__init__.py -> build/lib/lobster/services/data_management
2026-01-07T16:18:40,703   copying lobster/services/data_management/modality_management_service.py -> build/lib/lobster/services/data_management
2026-01-07T16:18:40,706   creating build/lib/lobster/services/metadata
2026-01-07T16:18:40,707   copying lobster/services/metadata/manual_annotation_service.py -> build/lib/lobster/services/metadata
2026-01-07T16:18:40,710   copying lobster/services/metadata/metadata_validation_service.py -> build/lib/lobster/services/metadata
2026-01-07T16:18:40,713   copying lobster/services/metadata/__init__.py -> build/lib/lobster/services/metadata
2026-01-07T16:18:40,715   copying lobster/services/metadata/identifier_provenance_service.py -> build/lib/lobster/services/metadata
2026-01-07T16:18:40,717   copying lobster/services/metadata/sample_grouping_service.py -> build/lib/lobster/services/metadata
2026-01-07T16:18:40,720   copying lobster/services/metadata/metadata_standardization_service.py -> build/lib/lobster/services/metadata
2026-01-07T16:18:40,723   creating build/lib/lobster/services/orchestration
2026-01-07T16:18:40,724   copying lobster/services/orchestration/__init__.py -> build/lib/lobster/services/orchestration
2026-01-07T16:18:40,726   copying lobster/services/orchestration/publication_processing_service.py -> build/lib/lobster/services/orchestration
2026-01-07T16:18:40,730   creating build/lib/lobster/services/ml
2026-01-07T16:18:40,731   copying lobster/services/ml/__init__.py -> build/lib/lobster/services/ml
2026-01-07T16:18:40,733   creating build/lib/lobster/services/analysis
2026-01-07T16:18:40,734   copying lobster/services/analysis/enhanced_singlecell_service.py -> build/lib/lobster/services/analysis
2026-01-07T16:18:40,738   copying lobster/services/analysis/scvi_embedding_service.py -> build/lib/lobster/services/analysis
2026-01-07T16:18:40,740   copying lobster/services/analysis/differential_formula_service.py -> build/lib/lobster/services/analysis
2026-01-07T16:18:40,743   copying lobster/services/analysis/structure_analysis_service.py -> build/lib/lobster/services/analysis
2026-01-07T16:18:40,746   copying lobster/services/analysis/bulk_rnaseq_service.py -> build/lib/lobster/services/analysis
2026-01-07T16:18:40,750   copying lobster/services/analysis/clustering_service.py -> build/lib/lobster/services/analysis
2026-01-07T16:18:40,754   copying lobster/services/analysis/__init__.py -> build/lib/lobster/services/analysis
2026-01-07T16:18:40,755   copying lobster/services/analysis/pseudobulk_service.py -> build/lib/lobster/services/analysis
2026-01-07T16:18:40,759   creating build/lib/lobster/services/visualization
2026-01-07T16:18:40,760   copying lobster/services/visualization/visualization_service.py -> build/lib/lobster/services/visualization
2026-01-07T16:18:40,764   copying lobster/services/visualization/pymol_visualization_service.py -> build/lib/lobster/services/visualization
2026-01-07T16:18:40,767   copying lobster/services/visualization/__init__.py -> build/lib/lobster/services/visualization
2026-01-07T16:18:40,769   copying lobster/services/visualization/bulk_visualization_service.py -> build/lib/lobster/services/visualization
2026-01-07T16:18:40,772   creating build/lib/lobster/services/quality
2026-01-07T16:18:40,773   copying lobster/services/quality/quality_service.py -> build/lib/lobster/services/quality
2026-01-07T16:18:40,776   copying lobster/services/quality/preprocessing_service.py -> build/lib/lobster/services/quality
2026-01-07T16:18:40,779   copying lobster/services/quality/__init__.py -> build/lib/lobster/services/quality
2026-01-07T16:18:40,782   creating build/lib/lobster/services/data_access
2026-01-07T16:18:40,783   copying lobster/services/data_access/pride_download_service.py -> build/lib/lobster/services/data_access
2026-01-07T16:18:40,786   copying lobster/services/data_access/geo_fallback_service.py -> build/lib/lobster/services/data_access
2026-01-07T16:18:40,789   copying lobster/services/data_access/massive_download_service.py -> build/lib/lobster/services/data_access
2026-01-07T16:18:40,792   copying lobster/services/data_access/docling_service.py -> build/lib/lobster/services/data_access
2026-01-07T16:18:40,795   copying lobster/services/data_access/__init__.py -> build/lib/lobster/services/data_access
2026-01-07T16:18:40,797   copying lobster/services/data_access/content_access_service.py -> build/lib/lobster/services/data_access
2026-01-07T16:18:40,802   copying lobster/services/data_access/geo_download_service.py -> build/lib/lobster/services/data_access
2026-01-07T16:18:40,804   copying lobster/services/data_access/workspace_content_service.py -> build/lib/lobster/services/data_access
2026-01-07T16:18:40,809   copying lobster/services/data_access/protein_structure_fetch_service.py -> build/lib/lobster/services/data_access
2026-01-07T16:18:40,811   copying lobster/services/data_access/sra_download_service.py -> build/lib/lobster/services/data_access
2026-01-07T16:18:40,814   copying lobster/services/data_access/geo_service.py -> build/lib/lobster/services/data_access
2026-01-07T16:18:40,824   creating build/lib/lobster/services/templates
2026-01-07T16:18:40,825   copying lobster/services/templates/annotation_templates.py -> build/lib/lobster/services/templates
2026-01-07T16:18:40,829   copying lobster/services/templates/__init__.py -> build/lib/lobster/services/templates
2026-01-07T16:18:40,831   creating build/lib/lobster/services/execution
2026-01-07T16:18:40,832   copying lobster/services/execution/execution_context_builder.py -> build/lib/lobster/services/execution
2026-01-07T16:18:40,834   copying lobster/services/execution/custom_code_execution_service.py -> build/lib/lobster/services/execution
2026-01-07T16:18:40,837   copying lobster/services/execution/__init__.py -> build/lib/lobster/services/execution
2026-01-07T16:18:40,839   creating build/lib/lobster/services/metadata/protocol_extraction
2026-01-07T16:18:40,840   copying lobster/services/metadata/protocol_extraction/base.py -> build/lib/lobster/services/metadata/protocol_extraction
2026-01-07T16:18:40,843   copying lobster/services/metadata/protocol_extraction/__init__.py -> build/lib/lobster/services/metadata/protocol_extraction
2026-01-07T16:18:40,845   creating build/lib/lobster/services/metadata/protocol_extraction/mass_spec
2026-01-07T16:18:40,846   copying lobster/services/metadata/protocol_extraction/mass_spec/service.py -> build/lib/lobster/services/metadata/protocol_extraction/mass_spec
2026-01-07T16:18:40,848   copying lobster/services/metadata/protocol_extraction/mass_spec/__init__.py -> build/lib/lobster/services/metadata/protocol_extraction/mass_spec
2026-01-07T16:18:40,850   copying lobster/services/metadata/protocol_extraction/mass_spec/details.py -> build/lib/lobster/services/metadata/protocol_extraction/mass_spec
2026-01-07T16:18:40,853   creating build/lib/lobster/services/metadata/protocol_extraction/amplicon
2026-01-07T16:18:40,854   copying lobster/services/metadata/protocol_extraction/amplicon/service.py -> build/lib/lobster/services/metadata/protocol_extraction/amplicon
2026-01-07T16:18:40,857   copying lobster/services/metadata/protocol_extraction/amplicon/__init__.py -> build/lib/lobster/services/metadata/protocol_extraction/amplicon
2026-01-07T16:18:40,859   copying lobster/services/metadata/protocol_extraction/amplicon/details.py -> build/lib/lobster/services/metadata/protocol_extraction/amplicon
2026-01-07T16:18:40,862   creating build/lib/lobster/services/metadata/protocol_extraction/rnaseq
2026-01-07T16:18:40,863   copying lobster/services/metadata/protocol_extraction/rnaseq/service.py -> build/lib/lobster/services/metadata/protocol_extraction/rnaseq
2026-01-07T16:18:40,865   copying lobster/services/metadata/protocol_extraction/rnaseq/__init__.py -> build/lib/lobster/services/metadata/protocol_extraction/rnaseq
2026-01-07T16:18:40,867   copying lobster/services/metadata/protocol_extraction/rnaseq/details.py -> build/lib/lobster/services/metadata/protocol_extraction/rnaseq
2026-01-07T16:18:40,870   creating build/lib/lobster/services/data_access/geo
2026-01-07T16:18:40,872   copying lobster/services/data_access/geo/parser.py -> build/lib/lobster/services/data_access/geo
2026-01-07T16:18:40,876   copying lobster/services/data_access/geo/facade.py -> build/lib/lobster/services/data_access/geo
2026-01-07T16:18:40,878   copying lobster/services/data_access/geo/__init__.py -> build/lib/lobster/services/data_access/geo
2026-01-07T16:18:40,880   copying lobster/services/data_access/geo/downloader.py -> build/lib/lobster/services/data_access/geo
2026-01-07T16:18:40,883   copying lobster/services/data_access/geo/strategy.py -> build/lib/lobster/services/data_access/geo
2026-01-07T16:18:40,886   copying lobster/services/data_access/geo/constants.py -> build/lib/lobster/services/data_access/geo
2026-01-07T16:18:40,889   creating build/lib/lobster/services/data_access/geo/metadata
2026-01-07T16:18:40,890   copying lobster/services/data_access/geo/metadata/__init__.py -> build/lib/lobster/services/data_access/geo/metadata
2026-01-07T16:18:40,892   creating build/lib/lobster/services/data_access/geo/utils
2026-01-07T16:18:40,893   copying lobster/services/data_access/geo/utils/__init__.py -> build/lib/lobster/services/data_access/geo/utils
2026-01-07T16:18:40,896   creating build/lib/lobster/services/data_access/geo/sample
2026-01-07T16:18:40,897   copying lobster/services/data_access/geo/sample/__init__.py -> build/lib/lobster/services/data_access/geo/sample
2026-01-07T16:18:40,899   creating build/lib/lobster/services/data_access/geo/loaders
2026-01-07T16:18:40,900   copying lobster/services/data_access/geo/loaders/__init__.py -> build/lib/lobster/services/data_access/geo/loaders
2026-01-07T16:18:40,902   copying lobster/services/data_access/geo/loaders/tenx.py -> build/lib/lobster/services/data_access/geo/loaders
2026-01-07T16:18:40,905   creating build/lib/lobster/agents/proteomics
2026-01-07T16:18:40,906   copying lobster/agents/proteomics/state.py -> build/lib/lobster/agents/proteomics
2026-01-07T16:18:40,908   copying lobster/agents/proteomics/__init__.py -> build/lib/lobster/agents/proteomics
2026-01-07T16:18:40,911   creating build/lib/lobster/agents/transcriptomics
2026-01-07T16:18:40,912   copying lobster/agents/transcriptomics/transcriptomics_expert.py -> build/lib/lobster/agents/transcriptomics
2026-01-07T16:18:40,915   copying lobster/agents/transcriptomics/de_analysis_expert.py -> build/lib/lobster/agents/transcriptomics
2026-01-07T16:18:40,919   copying lobster/agents/transcriptomics/shared_tools.py -> build/lib/lobster/agents/transcriptomics
2026-01-07T16:18:40,922   copying lobster/agents/transcriptomics/state.py -> build/lib/lobster/agents/transcriptomics
2026-01-07T16:18:40,924   copying lobster/agents/transcriptomics/__init__.py -> build/lib/lobster/agents/transcriptomics
2026-01-07T16:18:40,926   copying lobster/agents/transcriptomics/annotation_expert.py -> build/lib/lobster/agents/transcriptomics
2026-01-07T16:18:40,930   creating build/lib/lobster/agents/archive
2026-01-07T16:18:40,931   copying lobster/agents/archive/research_agent_assistant.py -> build/lib/lobster/agents/archive
2026-01-07T16:18:40,934   creating build/lib/lobster/agents/langgraph_supervisor
2026-01-07T16:18:40,935   copying lobster/agents/langgraph_supervisor/handoff.py -> build/lib/lobster/agents/langgraph_supervisor
2026-01-07T16:18:40,938   copying lobster/agents/langgraph_supervisor/agent_name.py -> build/lib/lobster/agents/langgraph_supervisor
2026-01-07T16:18:40,940   copying lobster/agents/langgraph_supervisor/__init__.py -> build/lib/lobster/agents/langgraph_supervisor
2026-01-07T16:18:40,942   copying lobster/agents/langgraph_supervisor/supervisor.py -> build/lib/lobster/agents/langgraph_supervisor
2026-01-07T16:18:40,944   running egg_info
2026-01-07T16:18:40,956   writing lobster_ai.egg-info/PKG-INFO
2026-01-07T16:18:40,998   writing dependency_links to lobster_ai.egg-info/dependency_links.txt
2026-01-07T16:18:41,000   writing entry points to lobster_ai.egg-info/entry_points.txt
2026-01-07T16:18:41,032   writing requirements to lobster_ai.egg-info/requires.txt
2026-01-07T16:18:41,034   writing top-level names to lobster_ai.egg-info/top_level.txt
2026-01-07T16:18:41,171   reading manifest file 'lobster_ai.egg-info/SOURCES.txt'
2026-01-07T16:18:41,187   adding license file 'LICENSE'
2026-01-07T16:18:41,201   writing manifest file 'lobster_ai.egg-info/SOURCES.txt'
2026-01-07T16:18:41,290   creating build/lib/lobster/services/metadata/protocol_extraction/amplicon/resources
2026-01-07T16:18:41,291   copying lobster/services/metadata/protocol_extraction/amplicon/resources/primers.json -> build/lib/lobster/services/metadata/protocol_extraction/amplicon/resources
2026-01-07T16:18:41,328   installing to build/bdist.linux-armv7l/wheel
2026-01-07T16:18:41,329   running install
2026-01-07T16:18:41,352   running install_lib
2026-01-07T16:18:41,358   creating build/bdist.linux-armv7l/wheel
2026-01-07T16:18:41,360   creating build/bdist.linux-armv7l/wheel/lobster
2026-01-07T16:18:41,362   creating build/bdist.linux-armv7l/wheel/lobster/config
2026-01-07T16:18:41,364   creating build/bdist.linux-armv7l/wheel/lobster/config/providers
2026-01-07T16:18:41,365   copying build/lib/lobster/config/providers/ollama_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers
2026-01-07T16:18:41,368   copying build/lib/lobster/config/providers/bedrock_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers
2026-01-07T16:18:41,370   copying build/lib/lobster/config/providers/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers
2026-01-07T16:18:41,372   copying build/lib/lobster/config/providers/registry.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers
2026-01-07T16:18:41,374   copying build/lib/lobster/config/providers/gemini_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers
2026-01-07T16:18:41,376   copying build/lib/lobster/config/providers/base_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers
2026-01-07T16:18:41,379   copying build/lib/lobster/config/providers/anthropic_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers
2026-01-07T16:18:41,381   copying build/lib/lobster/config/supervisor_config.py -> build/bdist.linux-armv7l/wheel/./lobster/config
2026-01-07T16:18:41,383   copying build/lib/lobster/config/agent_config.py -> build/bdist.linux-armv7l/wheel/./lobster/config
2026-01-07T16:18:41,386   copying build/lib/lobster/config/ollama_service.py -> build/bdist.linux-armv7l/wheel/./lobster/config
2026-01-07T16:18:41,388   copying build/lib/lobster/config/workspace_config.py -> build/bdist.linux-armv7l/wheel/./lobster/config
2026-01-07T16:18:41,390   copying build/lib/lobster/config/base_config.py -> build/bdist.linux-armv7l/wheel/./lobster/config
2026-01-07T16:18:41,392   copying build/lib/lobster/config/llm_factory.py -> build/bdist.linux-armv7l/wheel/./lobster/config
2026-01-07T16:18:41,394   copying build/lib/lobster/config/global_config.py -> build/bdist.linux-armv7l/wheel/./lobster/config
2026-01-07T16:18:41,396   copying build/lib/lobster/config/provider_setup.py -> build/bdist.linux-armv7l/wheel/./lobster/config
2026-01-07T16:18:41,399   copying build/lib/lobster/config/config_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/config
2026-01-07T16:18:41,401   copying build/lib/lobster/config/agent_registry.py -> build/bdist.linux-armv7l/wheel/./lobster/config
2026-01-07T16:18:41,404   copying build/lib/lobster/config/model_service.py -> build/bdist.linux-armv7l/wheel/./lobster/config
2026-01-07T16:18:41,406   copying build/lib/lobster/config/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/config
2026-01-07T16:18:41,408   copying build/lib/lobster/config/settings.py -> build/bdist.linux-armv7l/wheel/./lobster/config
2026-01-07T16:18:41,410   copying build/lib/lobster/config/agent_capabilities.py -> build/bdist.linux-armv7l/wheel/./lobster/config
2026-01-07T16:18:41,413   copying build/lib/lobster/config/subscription_tiers.py -> build/bdist.linux-armv7l/wheel/./lobster/config
2026-01-07T16:18:41,415   copying build/lib/lobster/config/constants.py -> build/bdist.linux-armv7l/wheel/./lobster/config
2026-01-07T16:18:41,417   copying build/lib/lobster/version.py -> build/bdist.linux-armv7l/wheel/./lobster
2026-01-07T16:18:41,419   creating build/bdist.linux-armv7l/wheel/lobster/utils
2026-01-07T16:18:41,420   copying build/lib/lobster/utils/system.py -> build/bdist.linux-armv7l/wheel/./lobster/utils
2026-01-07T16:18:41,422   copying build/lib/lobster/utils/callbacks.py -> build/bdist.linux-armv7l/wheel/./lobster/utils
2026-01-07T16:18:41,425   copying build/lib/lobster/utils/json_extractor.py -> build/bdist.linux-armv7l/wheel/./lobster/utils
2026-01-07T16:18:41,427   copying build/lib/lobster/utils/file_analyzer.py -> build/bdist.linux-armv7l/wheel/./lobster/utils
2026-01-07T16:18:41,430   copying build/lib/lobster/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/utils
2026-01-07T16:18:41,431   copying build/lib/lobster/utils/ssl_utils.py -> build/bdist.linux-armv7l/wheel/./lobster/utils
2026-01-07T16:18:41,434   copying build/lib/lobster/utils/error_handlers.py -> build/bdist.linux-armv7l/wheel/./lobster/utils
2026-01-07T16:18:41,436   copying build/lib/lobster/utils/file_naming.py -> build/bdist.linux-armv7l/wheel/./lobster/utils
2026-01-07T16:18:41,438   copying build/lib/lobster/utils/logger.py -> build/bdist.linux-armv7l/wheel/./lobster/utils
2026-01-07T16:18:41,440   copying build/lib/lobster/utils/deviance.py -> build/bdist.linux-armv7l/wheel/./lobster/utils
2026-01-07T16:18:41,442   copying build/lib/lobster/utils/progress_wrapper.py -> build/bdist.linux-armv7l/wheel/./lobster/utils
2026-01-07T16:18:41,445   creating build/bdist.linux-armv7l/wheel/lobster/cli_internal
2026-01-07T16:18:41,446   creating build/bdist.linux-armv7l/wheel/lobster/cli_internal/utils
2026-01-07T16:18:41,448   copying build/lib/lobster/cli_internal/utils/path_resolution.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/utils
2026-01-07T16:18:41,450   copying build/lib/lobster/cli_internal/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/utils
2026-01-07T16:18:41,452   copying build/lib/lobster/cli_internal/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal
2026-01-07T16:18:41,454   creating build/bdist.linux-armv7l/wheel/lobster/cli_internal/commands
2026-01-07T16:18:41,455   copying build/lib/lobster/cli_internal/commands/output_adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands
2026-01-07T16:18:41,458   creating build/bdist.linux-armv7l/wheel/lobster/cli_internal/commands/heavy
2026-01-07T16:18:41,459   copying build/lib/lobster/cli_internal/commands/heavy/visualization_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/heavy
2026-01-07T16:18:41,462   copying build/lib/lobster/cli_internal/commands/heavy/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/heavy
2026-01-07T16:18:41,464   copying build/lib/lobster/cli_internal/commands/heavy/modality_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/heavy
2026-01-07T16:18:41,467   copying build/lib/lobster/cli_internal/commands/heavy/data_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/heavy
2026-01-07T16:18:41,469   creating build/bdist.linux-armv7l/wheel/lobster/cli_internal/commands/light
2026-01-07T16:18:41,471   copying build/lib/lobster/cli_internal/commands/light/workspace_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light
2026-01-07T16:18:41,473   copying build/lib/lobster/cli_internal/commands/light/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light
2026-01-07T16:18:41,475   copying build/lib/lobster/cli_internal/commands/light/pipeline_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light
2026-01-07T16:18:41,478   copying build/lib/lobster/cli_internal/commands/light/queue_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light
2026-01-07T16:18:41,480   copying build/lib/lobster/cli_internal/commands/light/config_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light
2026-01-07T16:18:41,483   copying build/lib/lobster/cli_internal/commands/light/metadata_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light
2026-01-07T16:18:41,485   copying build/lib/lobster/cli_internal/commands/light/file_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light
2026-01-07T16:18:41,488   copying build/lib/lobster/cli_internal/commands/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands
2026-01-07T16:18:41,490   copying build/lib/lobster/_version.py -> build/bdist.linux-armv7l/wheel/./lobster
2026-01-07T16:18:41,492   copying build/lib/lobster/__main__.py -> build/bdist.linux-armv7l/wheel/./lobster
2026-01-07T16:18:41,494   creating build/bdist.linux-armv7l/wheel/lobster/lobster_cloud
2026-01-07T16:18:41,495   copying build/lib/lobster/lobster_cloud/client.py -> build/bdist.linux-armv7l/wheel/./lobster/lobster_cloud
2026-01-07T16:18:41,498   copying build/lib/lobster/lobster_cloud/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/lobster_cloud
2026-01-07T16:18:41,500   copying build/lib/lobster/cli.py -> build/bdist.linux-armv7l/wheel/./lobster
2026-01-07T16:18:41,506   creating build/bdist.linux-armv7l/wheel/lobster/tools
2026-01-07T16:18:41,508   creating build/bdist.linux-armv7l/wheel/lobster/tools/providers
2026-01-07T16:18:41,509   copying build/lib/lobster/tools/providers/biorxiv_medrxiv_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers
2026-01-07T16:18:41,513   copying build/lib/lobster/tools/providers/geo_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers
2026-01-07T16:18:41,516   copying build/lib/lobster/tools/providers/biorxiv_medrxiv_config.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers
2026-01-07T16:18:41,518   copying build/lib/lobster/tools/providers/organism_enum.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers
2026-01-07T16:18:41,520   copying build/lib/lobster/tools/providers/publication_resolver.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers
2026-01-07T16:18:41,523   copying build/lib/lobster/tools/providers/pride_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers
2026-01-07T16:18:41,526   copying build/lib/lobster/tools/providers/webpage_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers
2026-01-07T16:18:41,528   copying build/lib/lobster/tools/providers/massive_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers
2026-01-07T16:18:41,531   copying build/lib/lobster/tools/providers/ncbi_query_builder.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers
2026-01-07T16:18:41,534   copying build/lib/lobster/tools/providers/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers
2026-01-07T16:18:41,536   copying build/lib/lobster/tools/providers/pdb_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers
2026-01-07T16:18:41,538   copying build/lib/lobster/tools/providers/pmc_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers
2026-01-07T16:18:41,542   copying build/lib/lobster/tools/providers/biopython_entrez_wrapper.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers
2026-01-07T16:18:41,544   copying build/lib/lobster/tools/providers/abstract_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers
2026-01-07T16:18:41,546   copying build/lib/lobster/tools/providers/pride_normalizer.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers
2026-01-07T16:18:41,549   copying build/lib/lobster/tools/providers/geo_utils.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers
2026-01-07T16:18:41,551   copying build/lib/lobster/tools/providers/structure_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers
2026-01-07T16:18:41,554   copying build/lib/lobster/tools/providers/base_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers
2026-01-07T16:18:41,556   copying build/lib/lobster/tools/providers/pubmed_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers
2026-01-07T16:18:41,560   copying build/lib/lobster/tools/providers/provider_registry.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers
2026-01-07T16:18:41,563   copying build/lib/lobster/tools/providers/sra_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers
2026-01-07T16:18:41,567   copying build/lib/lobster/tools/expert_handoff_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/tools
2026-01-07T16:18:41,569   copying build/lib/lobster/tools/gpu_detector.py -> build/bdist.linux-armv7l/wheel/./lobster/tools
2026-01-07T16:18:41,571   copying build/lib/lobster/tools/geo_parser.py -> build/bdist.linux-armv7l/wheel/./lobster/tools
2026-01-07T16:18:41,573   copying build/lib/lobster/tools/download_orchestrator.py -> build/bdist.linux-armv7l/wheel/./lobster/tools
2026-01-07T16:18:41,576   copying build/lib/lobster/tools/workflow_tracker.py -> build/bdist.linux-armv7l/wheel/./lobster/tools
2026-01-07T16:18:41,578   copying build/lib/lobster/tools/todo_tools.py -> build/bdist.linux-armv7l/wheel/./lobster/tools
2026-01-07T16:18:41,581   copying build/lib/lobster/tools/custom_code_tool.py -> build/bdist.linux-armv7l/wheel/./lobster/tools
2026-01-07T16:18:41,583   copying build/lib/lobster/tools/rate_limiter.py -> build/bdist.linux-armv7l/wheel/./lobster/tools
2026-01-07T16:18:41,586   copying build/lib/lobster/tools/expert_handoff_patterns.py -> build/bdist.linux-armv7l/wheel/./lobster/tools
2026-01-07T16:18:41,588   copying build/lib/lobster/tools/pipeline_strategy.py -> build/bdist.linux-armv7l/wheel/./lobster/tools
2026-01-07T16:18:41,590   copying build/lib/lobster/tools/geo_downloader.py -> build/bdist.linux-armv7l/wheel/./lobster/tools
2026-01-07T16:18:41,592   copying build/lib/lobster/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/tools
2026-01-07T16:18:41,594   copying build/lib/lobster/tools/enhanced_handoff_tool.py -> build/bdist.linux-armv7l/wheel/./lobster/tools
2026-01-07T16:18:41,596   copying build/lib/lobster/tools/handoff_tool.py -> build/bdist.linux-armv7l/wheel/./lobster/tools
2026-01-07T16:18:41,599   creating build/bdist.linux-armv7l/wheel/lobster/tools/archive
2026-01-07T16:18:41,600   copying build/lib/lobster/tools/archive/unified_content_service.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/archive
2026-01-07T16:18:41,603   copying build/lib/lobster/tools/archive/publication_service.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/archive
2026-01-07T16:18:41,605   copying build/lib/lobster/tools/url_transforms.py -> build/bdist.linux-armv7l/wheel/./lobster/tools
2026-01-07T16:18:41,607   copying build/lib/lobster/tools/workspace_tool.py -> build/bdist.linux-armv7l/wheel/./lobster/tools
2026-01-07T16:18:41,612   creating build/bdist.linux-armv7l/wheel/lobster/core
2026-01-07T16:18:41,613   copying build/lib/lobster/core/notebook_validator.py -> build/bdist.linux-armv7l/wheel/./lobster/core
2026-01-07T16:18:41,616   creating build/bdist.linux-armv7l/wheel/lobster/core/identifiers
2026-01-07T16:18:41,617   copying build/lib/lobster/core/identifiers/accession_resolver.py -> build/bdist.linux-armv7l/wheel/./lobster/core/identifiers
2026-01-07T16:18:41,620   copying build/lib/lobster/core/identifiers/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/identifiers
2026-01-07T16:18:41,621   copying build/lib/lobster/core/ir_coverage.py -> build/bdist.linux-armv7l/wheel/./lobster/core
2026-01-07T16:18:41,624   copying build/lib/lobster/core/exceptions.py -> build/bdist.linux-armv7l/wheel/./lobster/core
2026-01-07T16:18:41,626   copying build/lib/lobster/core/plugin_loader.py -> build/bdist.linux-armv7l/wheel/./lobster/core
2026-01-07T16:18:41,628   copying build/lib/lobster/core/provenance.py -> build/bdist.linux-armv7l/wheel/./lobster/core
2026-01-07T16:18:41,630   copying build/lib/lobster/core/client.py -> build/bdist.linux-armv7l/wheel/./lobster/core
2026-01-07T16:18:41,634   creating build/bdist.linux-armv7l/wheel/lobster/core/backends
2026-01-07T16:18:41,635   copying build/lib/lobster/core/backends/base.py -> build/bdist.linux-armv7l/wheel/./lobster/core/backends
2026-01-07T16:18:41,638   copying build/lib/lobster/core/backends/h5ad_backend.py -> build/bdist.linux-armv7l/wheel/./lobster/core/backends
2026-01-07T16:18:41,641   copying build/lib/lobster/core/backends/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/backends
2026-01-07T16:18:41,642   copying build/lib/lobster/core/backends/mudata_backend.py -> build/bdist.linux-armv7l/wheel/./lobster/core/backends
2026-01-07T16:18:41,645   creating build/bdist.linux-armv7l/wheel/lobster/core/adapters
2026-01-07T16:18:41,646   copying build/lib/lobster/core/adapters/base.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters
2026-01-07T16:18:41,649   copying build/lib/lobster/core/adapters/pseudobulk_adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters
2026-01-07T16:18:41,651   copying build/lib/lobster/core/adapters/proteomics_adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters
2026-01-07T16:18:41,653   copying build/lib/lobster/core/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters
2026-01-07T16:18:41,655   copying build/lib/lobster/core/adapters/protein_structure_adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters
2026-01-07T16:18:41,657   copying build/lib/lobster/core/adapters/transcriptomics_adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters
2026-01-07T16:18:41,660   creating build/bdist.linux-armv7l/wheel/lobster/core/schemas
2026-01-07T16:18:41,661   copying build/lib/lobster/core/schemas/database_registry.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas
2026-01-07T16:18:41,664   copying build/lib/lobster/core/schemas/export_schemas.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas
2026-01-07T16:18:41,667   copying build/lib/lobster/core/schemas/validation.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas
2026-01-07T16:18:41,669   copying build/lib/lobster/core/schemas/transcriptomics.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas
2026-01-07T16:18:41,672   copying build/lib/lobster/core/schemas/metagenomics.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas
2026-01-07T16:18:41,675   copying build/lib/lobster/core/schemas/metabolomics.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas
2026-01-07T16:18:41,678   copying build/lib/lobster/core/schemas/publication_queue.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas
2026-01-07T16:18:41,680   copying build/lib/lobster/core/schemas/protein_structure.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas
2026-01-07T16:18:41,683   copying build/lib/lobster/core/schemas/download_urls.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas
2026-01-07T16:18:41,685   copying build/lib/lobster/core/schemas/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas
2026-01-07T16:18:41,687   copying build/lib/lobster/core/schemas/sra.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas
2026-01-07T16:18:41,690   copying build/lib/lobster/core/schemas/database_mappings.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas
2026-01-07T16:18:41,693   copying build/lib/lobster/core/schemas/download_queue.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas
2026-01-07T16:18:41,695   copying build/lib/lobster/core/schemas/proteomics.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas
2026-01-07T16:18:41,697   copying build/lib/lobster/core/data_manager_v2.py -> build/bdist.linux-armv7l/wheel/./lobster/core
2026-01-07T16:18:41,701   copying build/lib/lobster/core/publication_queue.py -> build/bdist.linux-armv7l/wheel/./lobster/core
2026-01-07T16:18:41,704   creating build/bdist.linux-armv7l/wheel/lobster/core/utils
2026-01-07T16:18:41,705   copying build/lib/lobster/core/utils/h5ad_utils.py -> build/bdist.linux-armv7l/wheel/./lobster/core/utils
2026-01-07T16:18:41,708   copying build/lib/lobster/core/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/utils
2026-01-07T16:18:41,710   copying build/lib/lobster/core/plot_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/core
2026-01-07T16:18:41,712   copying build/lib/lobster/core/archive_utils.py -> build/bdist.linux-armv7l/wheel/./lobster/core
2026-01-07T16:18:41,714   copying build/lib/lobster/core/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core
2026-01-07T16:18:41,716   copying build/lib/lobster/core/analysis_ir.py -> build/bdist.linux-armv7l/wheel/./lobster/core
2026-01-07T16:18:41,719   creating build/bdist.linux-armv7l/wheel/lobster/core/interfaces
2026-01-07T16:18:41,720   copying build/lib/lobster/core/interfaces/adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces
2026-01-07T16:18:41,722   copying build/lib/lobster/core/interfaces/validator.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces
2026-01-07T16:18:41,724   copying build/lib/lobster/core/interfaces/base_client.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces
2026-01-07T16:18:41,726   copying build/lib/lobster/core/interfaces/backend.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces
2026-01-07T16:18:41,728   copying build/lib/lobster/core/interfaces/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces
2026-01-07T16:18:41,730   copying build/lib/lobster/core/interfaces/download_service.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces
2026-01-07T16:18:41,732   copying build/lib/lobster/core/config_resolver.py -> build/bdist.linux-armv7l/wheel/./lobster/core
2026-01-07T16:18:41,735   copying build/lib/lobster/core/notebook_exporter.py -> build/bdist.linux-armv7l/wheel/./lobster/core
2026-01-07T16:18:41,737   copying build/lib/lobster/core/license_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/core
2026-01-07T16:18:41,740   copying build/lib/lobster/core/component_registry.py -> build/bdist.linux-armv7l/wheel/./lobster/core
2026-01-07T16:18:41,742   copying build/lib/lobster/core/notebook_executor.py -> build/bdist.linux-armv7l/wheel/./lobster/core
2026-01-07T16:18:41,745   copying build/lib/lobster/core/download_queue.py -> build/bdist.linux-armv7l/wheel/./lobster/core
2026-01-07T16:18:41,747   copying build/lib/lobster/core/queue_storage.py -> build/bdist.linux-armv7l/wheel/./lobster/core
2026-01-07T16:18:41,749   copying build/lib/lobster/core/ris_parser.py -> build/bdist.linux-armv7l/wheel/./lobster/core
2026-01-07T16:18:41,751   copying build/lib/lobster/core/workspace.py -> build/bdist.linux-armv7l/wheel/./lobster/core
2026-01-07T16:18:41,753   creating build/bdist.linux-armv7l/wheel/lobster/ui
2026-01-07T16:18:41,754   copying build/lib/lobster/ui/console_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/ui
2026-01-07T16:18:41,758   creating build/bdist.linux-armv7l/wheel/lobster/ui/widgets
2026-01-07T16:18:41,759   copying build/lib/lobster/ui/widgets/query_prompt.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets
2026-01-07T16:18:41,761   copying build/lib/lobster/ui/widgets/error_modal.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets
2026-01-07T16:18:41,763   copying build/lib/lobster/ui/widgets/chat_message.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets
2026-01-07T16:18:41,765   copying build/lib/lobster/ui/widgets/queue_status_bar.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets
2026-01-07T16:18:41,767   copying build/lib/lobster/ui/widgets/activity_log.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets
2026-01-07T16:18:41,769   copying build/lib/lobster/ui/widgets/results_display.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets
2026-01-07T16:18:41,771   copying build/lib/lobster/ui/widgets/connections_panel.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets
2026-01-07T16:18:41,773   copying build/lib/lobster/ui/widgets/data_hub.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets
2026-01-07T16:18:41,776   copying build/lib/lobster/ui/widgets/token_usage_panel.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets
2026-01-07T16:18:41,778   copying build/lib/lobster/ui/widgets/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets
2026-01-07T16:18:41,780   copying build/lib/lobster/ui/widgets/agents_panel.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets
2026-01-07T16:18:41,782   copying build/lib/lobster/ui/widgets/adapters_panel.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets
2026-01-07T16:18:41,784   copying build/lib/lobster/ui/widgets/plot_preview.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets
2026-01-07T16:18:41,786   copying build/lib/lobster/ui/widgets/queue_panel.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets
2026-01-07T16:18:41,788   copying build/lib/lobster/ui/widgets/system_info.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets
2026-01-07T16:18:41,790   copying build/lib/lobster/ui/widgets/modality_list.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets
2026-01-07T16:18:41,792   copying build/lib/lobster/ui/widgets/status_bar.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets
2026-01-07T16:18:41,794   copying build/lib/lobster/ui/progress_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/ui
2026-01-07T16:18:41,796   copying build/lib/lobster/ui/live_dashboard.py -> build/bdist.linux-armv7l/wheel/./lobster/ui
2026-01-07T16:18:41,799   creating build/bdist.linux-armv7l/wheel/lobster/ui/callbacks
2026-01-07T16:18:41,800   copying build/lib/lobster/ui/callbacks/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/callbacks
2026-01-07T16:18:41,802   copying build/lib/lobster/ui/callbacks/textual_callback.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/callbacks
2026-01-07T16:18:41,804   copying build/lib/lobster/ui/themes.py -> build/bdist.linux-armv7l/wheel/./lobster/ui
2026-01-07T16:18:41,806   copying build/lib/lobster/ui/os_app.py -> build/bdist.linux-armv7l/wheel/./lobster/ui
2026-01-07T16:18:41,809   creating build/bdist.linux-armv7l/wheel/lobster/ui/screens
2026-01-07T16:18:41,810   copying build/lib/lobster/ui/screens/analysis_screen.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/screens
2026-01-07T16:18:41,812   copying build/lib/lobster/ui/screens/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/screens
2026-01-07T16:18:41,814   copying build/lib/lobster/ui/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui
2026-01-07T16:18:41,816   copying build/lib/lobster/ui/commands.py -> build/bdist.linux-armv7l/wheel/./lobster/ui
2026-01-07T16:18:41,819   creating build/bdist.linux-armv7l/wheel/lobster/ui/formatters
2026-01-07T16:18:41,820   copying build/lib/lobster/ui/formatters/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/formatters
2026-01-07T16:18:41,822   creating build/bdist.linux-armv7l/wheel/lobster/ui/services
2026-01-07T16:18:41,823   copying build/lib/lobster/ui/services/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/services
2026-01-07T16:18:41,825   copying build/lib/lobster/ui/services/error_service.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/services
2026-01-07T16:18:41,828   creating build/bdist.linux-armv7l/wheel/lobster/ui/components
2026-01-07T16:18:41,829   copying build/lib/lobster/ui/components/status_display.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/components
2026-01-07T16:18:41,832   copying build/lib/lobster/ui/components/multi_progress.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/components
2026-01-07T16:18:41,834   copying build/lib/lobster/ui/components/file_tree.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/components
2026-01-07T16:18:41,837   copying build/lib/lobster/ui/components/parallel_workers_progress.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/components
2026-01-07T16:18:41,839   copying build/lib/lobster/ui/components/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/components
2026-01-07T16:18:41,841   copying build/lib/lobster/main.py -> build/bdist.linux-armv7l/wheel/./lobster
2026-01-07T16:18:41,843   creating build/bdist.linux-armv7l/wheel/lobster/services
2026-01-07T16:18:41,845   creating build/bdist.linux-armv7l/wheel/lobster/services/data_management
2026-01-07T16:18:41,846   copying build/lib/lobster/services/data_management/concatenation_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_management
2026-01-07T16:18:41,849   copying build/lib/lobster/services/data_management/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_management
2026-01-07T16:18:41,851   copying build/lib/lobster/services/data_management/modality_management_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_management
2026-01-07T16:18:41,854   creating build/bdist.linux-armv7l/wheel/lobster/services/metadata
2026-01-07T16:18:41,855   copying build/lib/lobster/services/metadata/manual_annotation_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata
2026-01-07T16:18:41,858   copying build/lib/lobster/services/metadata/metadata_validation_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata
2026-01-07T16:18:41,861   copying build/lib/lobster/services/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata
2026-01-07T16:18:41,862   creating build/bdist.linux-armv7l/wheel/lobster/services/metadata/protocol_extraction
2026-01-07T16:18:41,863   copying build/lib/lobster/services/metadata/protocol_extraction/base.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction
2026-01-07T16:18:41,866   creating build/bdist.linux-armv7l/wheel/lobster/services/metadata/protocol_extraction/mass_spec
2026-01-07T16:18:41,867   copying build/lib/lobster/services/metadata/protocol_extraction/mass_spec/service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/mass_spec
2026-01-07T16:18:41,869   copying build/lib/lobster/services/metadata/protocol_extraction/mass_spec/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/mass_spec
2026-01-07T16:18:41,871   copying build/lib/lobster/services/metadata/protocol_extraction/mass_spec/details.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/mass_spec
2026-01-07T16:18:41,874   creating build/bdist.linux-armv7l/wheel/lobster/services/metadata/protocol_extraction/amplicon
2026-01-07T16:18:41,875   creating build/bdist.linux-armv7l/wheel/lobster/services/metadata/protocol_extraction/amplicon/resources
2026-01-07T16:18:41,876   copying build/lib/lobster/services/metadata/protocol_extraction/amplicon/resources/primers.json -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/amplicon/resources
2026-01-07T16:18:41,879   copying build/lib/lobster/services/metadata/protocol_extraction/amplicon/service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/amplicon
2026-01-07T16:18:41,882   copying build/lib/lobster/services/metadata/protocol_extraction/amplicon/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/amplicon
2026-01-07T16:18:41,883   copying build/lib/lobster/services/metadata/protocol_extraction/amplicon/details.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/amplicon
2026-01-07T16:18:41,886   creating build/bdist.linux-armv7l/wheel/lobster/services/metadata/protocol_extraction/rnaseq
2026-01-07T16:18:41,887   copying build/lib/lobster/services/metadata/protocol_extraction/rnaseq/service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/rnaseq
2026-01-07T16:18:41,889   copying build/lib/lobster/services/metadata/protocol_extraction/rnaseq/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/rnaseq
2026-01-07T16:18:41,892   copying build/lib/lobster/services/metadata/protocol_extraction/rnaseq/details.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/rnaseq
2026-01-07T16:18:41,894   copying build/lib/lobster/services/metadata/protocol_extraction/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction
2026-01-07T16:18:41,896   copying build/lib/lobster/services/metadata/identifier_provenance_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata
2026-01-07T16:18:41,899   copying build/lib/lobster/services/metadata/sample_grouping_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata
2026-01-07T16:18:41,901   copying build/lib/lobster/services/metadata/metadata_standardization_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata
2026-01-07T16:18:41,904   creating build/bdist.linux-armv7l/wheel/lobster/services/orchestration
2026-01-07T16:18:41,905   copying build/lib/lobster/services/orchestration/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/orchestration
2026-01-07T16:18:41,907   copying build/lib/lobster/services/orchestration/publication_processing_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/orchestration
2026-01-07T16:18:41,912   creating build/bdist.linux-armv7l/wheel/lobster/services/ml
2026-01-07T16:18:41,913   copying build/lib/lobster/services/ml/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/ml
2026-01-07T16:18:41,915   copying build/lib/lobster/services/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services
2026-01-07T16:18:41,917   creating build/bdist.linux-armv7l/wheel/lobster/services/analysis
2026-01-07T16:18:41,918   copying build/lib/lobster/services/analysis/enhanced_singlecell_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis
2026-01-07T16:18:41,921   copying build/lib/lobster/services/analysis/scvi_embedding_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis
2026-01-07T16:18:41,924   copying build/lib/lobster/services/analysis/differential_formula_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis
2026-01-07T16:18:41,927   copying build/lib/lobster/services/analysis/structure_analysis_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis
2026-01-07T16:18:41,929   copying build/lib/lobster/services/analysis/bulk_rnaseq_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis
2026-01-07T16:18:41,934   copying build/lib/lobster/services/analysis/clustering_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis
2026-01-07T16:18:41,938   copying build/lib/lobster/services/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis
2026-01-07T16:18:41,940   copying build/lib/lobster/services/analysis/pseudobulk_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis
2026-01-07T16:18:41,943   creating build/bdist.linux-armv7l/wheel/lobster/services/visualization
2026-01-07T16:18:41,944   copying build/lib/lobster/services/visualization/visualization_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/visualization
2026-01-07T16:18:41,948   copying build/lib/lobster/services/visualization/pymol_visualization_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/visualization
2026-01-07T16:18:41,951   copying build/lib/lobster/services/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/visualization
2026-01-07T16:18:41,953   copying build/lib/lobster/services/visualization/bulk_visualization_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/visualization
2026-01-07T16:18:41,956   creating build/bdist.linux-armv7l/wheel/lobster/services/quality
2026-01-07T16:18:41,957   copying build/lib/lobster/services/quality/quality_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/quality
2026-01-07T16:18:41,960   copying build/lib/lobster/services/quality/preprocessing_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/quality
2026-01-07T16:18:41,962   copying build/lib/lobster/services/quality/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/quality
2026-01-07T16:18:41,965   creating build/bdist.linux-armv7l/wheel/lobster/services/data_access
2026-01-07T16:18:41,966   copying build/lib/lobster/services/data_access/pride_download_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access
2026-01-07T16:18:41,968   copying build/lib/lobster/services/data_access/geo_fallback_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access
2026-01-07T16:18:41,971   copying build/lib/lobster/services/data_access/massive_download_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access
2026-01-07T16:18:41,973   copying build/lib/lobster/services/data_access/docling_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access
2026-01-07T16:18:41,976   copying build/lib/lobster/services/data_access/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access
2026-01-07T16:18:41,978   copying build/lib/lobster/services/data_access/content_access_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access
2026-01-07T16:18:41,981   copying build/lib/lobster/services/data_access/geo_download_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access
2026-01-07T16:18:41,984   copying build/lib/lobster/services/data_access/workspace_content_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access
2026-01-07T16:18:41,987   copying build/lib/lobster/services/data_access/protein_structure_fetch_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access
2026-01-07T16:18:41,990   creating build/bdist.linux-armv7l/wheel/lobster/services/data_access/geo
2026-01-07T16:18:41,991   creating build/bdist.linux-armv7l/wheel/lobster/services/data_access/geo/metadata
2026-01-07T16:18:41,992   copying build/lib/lobster/services/data_access/geo/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo/metadata
2026-01-07T16:18:41,995   creating build/bdist.linux-armv7l/wheel/lobster/services/data_access/geo/utils
2026-01-07T16:18:41,996   copying build/lib/lobster/services/data_access/geo/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo/utils
2026-01-07T16:18:41,998   copying build/lib/lobster/services/data_access/geo/parser.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo
2026-01-07T16:18:42,001   copying build/lib/lobster/services/data_access/geo/facade.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo
2026-01-07T16:18:42,003   copying build/lib/lobster/services/data_access/geo/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo
2026-01-07T16:18:42,006   creating build/bdist.linux-armv7l/wheel/lobster/services/data_access/geo/sample
2026-01-07T16:18:42,007   copying build/lib/lobster/services/data_access/geo/sample/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo/sample
2026-01-07T16:18:42,009   copying build/lib/lobster/services/data_access/geo/downloader.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo
2026-01-07T16:18:42,012   copying build/lib/lobster/services/data_access/geo/strategy.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo
2026-01-07T16:18:42,015   creating build/bdist.linux-armv7l/wheel/lobster/services/data_access/geo/loaders
2026-01-07T16:18:42,016   copying build/lib/lobster/services/data_access/geo/loaders/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo/loaders
2026-01-07T16:18:42,018   copying build/lib/lobster/services/data_access/geo/loaders/tenx.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo/loaders
2026-01-07T16:18:42,021   copying build/lib/lobster/services/data_access/geo/constants.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo
2026-01-07T16:18:42,023   copying build/lib/lobster/services/data_access/sra_download_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access
2026-01-07T16:18:42,027   copying build/lib/lobster/services/data_access/geo_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access
2026-01-07T16:18:42,035   creating build/bdist.linux-armv7l/wheel/lobster/services/templates
2026-01-07T16:18:42,037   copying build/lib/lobster/services/templates/annotation_templates.py -> build/bdist.linux-armv7l/wheel/./lobster/services/templates
2026-01-07T16:18:42,040   copying build/lib/lobster/services/templates/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/templates
2026-01-07T16:18:42,042   creating build/bdist.linux-armv7l/wheel/lobster/services/execution
2026-01-07T16:18:42,043   copying build/lib/lobster/services/execution/execution_context_builder.py -> build/bdist.linux-armv7l/wheel/./lobster/services/execution
2026-01-07T16:18:42,045   copying build/lib/lobster/services/execution/custom_code_execution_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/execution
2026-01-07T16:18:42,048   copying build/lib/lobster/services/execution/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/execution
2026-01-07T16:18:42,050   creating build/bdist.linux-armv7l/wheel/lobster/agents
2026-01-07T16:18:42,051   copying build/lib/lobster/agents/draw_graph.py -> build/bdist.linux-armv7l/wheel/./lobster/agents
2026-01-07T16:18:42,053   copying build/lib/lobster/agents/graph.py -> build/bdist.linux-armv7l/wheel/./lobster/agents
2026-01-07T16:18:42,055   copying build/lib/lobster/agents/data_expert_assistant.py -> build/bdist.linux-armv7l/wheel/./lobster/agents
2026-01-07T16:18:42,058   copying build/lib/lobster/agents/data_expert.py -> build/bdist.linux-armv7l/wheel/./lobster/agents
2026-01-07T16:18:42,061   copying build/lib/lobster/agents/state.py -> build/bdist.linux-armv7l/wheel/./lobster/agents
2026-01-07T16:18:42,064   copying build/lib/lobster/agents/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/agents
2026-01-07T16:18:42,065   copying build/lib/lobster/agents/research_agent.py -> build/bdist.linux-armv7l/wheel/./lobster/agents
2026-01-07T16:18:42,070   creating build/bdist.linux-armv7l/wheel/lobster/agents/proteomics
2026-01-07T16:18:42,071   copying build/lib/lobster/agents/proteomics/state.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/proteomics
2026-01-07T16:18:42,073   copying build/lib/lobster/agents/proteomics/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/proteomics
2026-01-07T16:18:42,074   copying build/lib/lobster/agents/visualization_expert.py -> build/bdist.linux-armv7l/wheel/./lobster/agents
2026-01-07T16:18:42,078   creating build/bdist.linux-armv7l/wheel/lobster/agents/transcriptomics
2026-01-07T16:18:42,079   copying build/lib/lobster/agents/transcriptomics/transcriptomics_expert.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics
2026-01-07T16:18:42,082   copying build/lib/lobster/agents/transcriptomics/de_analysis_expert.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics
2026-01-07T16:18:42,086   copying build/lib/lobster/agents/transcriptomics/shared_tools.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics
2026-01-07T16:18:42,088   copying build/lib/lobster/agents/transcriptomics/state.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics
2026-01-07T16:18:42,090   copying build/lib/lobster/agents/transcriptomics/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics
2026-01-07T16:18:42,092   copying build/lib/lobster/agents/transcriptomics/annotation_expert.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics
2026-01-07T16:18:42,096   creating build/bdist.linux-armv7l/wheel/lobster/agents/archive
2026-01-07T16:18:42,097   copying build/lib/lobster/agents/archive/research_agent_assistant.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/archive
2026-01-07T16:18:42,100   copying build/lib/lobster/agents/supervisor.py -> build/bdist.linux-armv7l/wheel/./lobster/agents
2026-01-07T16:18:42,104   creating build/bdist.linux-armv7l/wheel/lobster/agents/langgraph_supervisor
2026-01-07T16:18:42,105   copying build/lib/lobster/agents/langgraph_supervisor/handoff.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/langgraph_supervisor
2026-01-07T16:18:42,108   copying build/lib/lobster/agents/langgraph_supervisor/agent_name.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/langgraph_supervisor
2026-01-07T16:18:42,110   copying build/lib/lobster/agents/langgraph_supervisor/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/langgraph_supervisor
2026-01-07T16:18:42,112   copying build/lib/lobster/agents/langgraph_supervisor/supervisor.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/langgraph_supervisor
2026-01-07T16:18:42,114   running install_egg_info
2026-01-07T16:18:42,121   Copying lobster_ai.egg-info to build/bdist.linux-armv7l/wheel/./lobster_ai-0.4.1.1-py3.11.egg-info
2026-01-07T16:18:42,135   running install_scripts
2026-01-07T16:18:42,150   creating build/bdist.linux-armv7l/wheel/lobster_ai-0.4.1.1.dist-info/WHEEL
2026-01-07T16:18:42,154   creating '/tmp/pip-wheel-kqxo0vsk/.tmp-nxmqbcb_/lobster_ai-0.4.1.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-01-07T16:18:42,157   adding 'lobster/__main__.py'
2026-01-07T16:18:42,158   adding 'lobster/_version.py'
2026-01-07T16:18:42,185   adding 'lobster/cli.py'
2026-01-07T16:18:42,188   adding 'lobster/main.py'
2026-01-07T16:18:42,189   adding 'lobster/version.py'
2026-01-07T16:18:42,191   adding 'lobster/agents/__init__.py'
2026-01-07T16:18:42,199   adding 'lobster/agents/data_expert.py'
2026-01-07T16:18:42,203   adding 'lobster/agents/data_expert_assistant.py'
2026-01-07T16:18:42,205   adding 'lobster/agents/draw_graph.py'
2026-01-07T16:18:42,207   adding 'lobster/agents/graph.py'
2026-01-07T16:18:42,221   adding 'lobster/agents/research_agent.py'
2026-01-07T16:18:42,225   adding 'lobster/agents/state.py'
2026-01-07T16:18:42,229   adding 'lobster/agents/supervisor.py'
2026-01-07T16:18:42,233   adding 'lobster/agents/visualization_expert.py'
2026-01-07T16:18:42,236   adding 'lobster/agents/archive/research_agent_assistant.py'
2026-01-07T16:18:42,238   adding 'lobster/agents/langgraph_supervisor/__init__.py'
2026-01-07T16:18:42,240   adding 'lobster/agents/langgraph_supervisor/agent_name.py'
2026-01-07T16:18:42,242   adding 'lobster/agents/langgraph_supervisor/handoff.py'
2026-01-07T16:18:42,245   adding 'lobster/agents/langgraph_supervisor/supervisor.py'
2026-01-07T16:18:42,247   adding 'lobster/agents/proteomics/__init__.py'
2026-01-07T16:18:42,248   adding 'lobster/agents/proteomics/state.py'
2026-01-07T16:18:42,250   adding 'lobster/agents/transcriptomics/__init__.py'
2026-01-07T16:18:42,254   adding 'lobster/agents/transcriptomics/annotation_expert.py'
2026-01-07T16:18:42,263   adding 'lobster/agents/transcriptomics/de_analysis_expert.py'
2026-01-07T16:18:42,267   adding 'lobster/agents/transcriptomics/shared_tools.py'
2026-01-07T16:18:42,269   adding 'lobster/agents/transcriptomics/state.py'
2026-01-07T16:18:42,274   adding 'lobster/agents/transcriptomics/transcriptomics_expert.py'
2026-01-07T16:18:42,276   adding 'lobster/cli_internal/__init__.py'
2026-01-07T16:18:42,278   adding 'lobster/cli_internal/commands/__init__.py'
2026-01-07T16:18:42,280   adding 'lobster/cli_internal/commands/output_adapter.py'
2026-01-07T16:18:42,282   adding 'lobster/cli_internal/commands/heavy/__init__.py'
2026-01-07T16:18:42,284   adding 'lobster/cli_internal/commands/heavy/data_commands.py'
2026-01-07T16:18:42,286   adding 'lobster/cli_internal/commands/heavy/modality_commands.py'
2026-01-07T16:18:42,288   adding 'lobster/cli_internal/commands/heavy/visualization_commands.py'
2026-01-07T16:18:42,290   adding 'lobster/cli_internal/commands/light/__init__.py'
2026-01-07T16:18:42,293   adding 'lobster/cli_internal/commands/light/config_commands.py'
2026-01-07T16:18:42,296   adding 'lobster/cli_internal/commands/light/file_commands.py'
2026-01-07T16:18:42,298   adding 'lobster/cli_internal/commands/light/metadata_commands.py'
2026-01-07T16:18:42,301   adding 'lobster/cli_internal/commands/light/pipeline_commands.py'
2026-01-07T16:18:42,303   adding 'lobster/cli_internal/commands/light/queue_commands.py'
2026-01-07T16:18:42,307   adding 'lobster/cli_internal/commands/light/workspace_commands.py'
2026-01-07T16:18:42,309   adding 'lobster/cli_internal/utils/__init__.py'
2026-01-07T16:18:42,311   adding 'lobster/cli_internal/utils/path_resolution.py'
2026-01-07T16:18:42,313   adding 'lobster/config/__init__.py'
2026-01-07T16:18:42,315   adding 'lobster/config/agent_capabilities.py'
2026-01-07T16:18:42,317   adding 'lobster/config/agent_config.py'
2026-01-07T16:18:42,319   adding 'lobster/config/agent_registry.py'
2026-01-07T16:18:42,321   adding 'lobster/config/base_config.py'
2026-01-07T16:18:42,323   adding 'lobster/config/config_manager.py'
2026-01-07T16:18:42,324   adding 'lobster/config/constants.py'
2026-01-07T16:18:42,326   adding 'lobster/config/global_config.py'
2026-01-07T16:18:42,327   adding 'lobster/config/llm_factory.py'
2026-01-07T16:18:42,329   adding 'lobster/config/model_service.py'
2026-01-07T16:18:42,331   adding 'lobster/config/ollama_service.py'
2026-01-07T16:18:42,333   adding 'lobster/config/provider_setup.py'
2026-01-07T16:18:42,335   adding 'lobster/config/settings.py'
2026-01-07T16:18:42,337   adding 'lobster/config/subscription_tiers.py'
2026-01-07T16:18:42,338   adding 'lobster/config/supervisor_config.py'
2026-01-07T16:18:42,340   adding 'lobster/config/workspace_config.py'
2026-01-07T16:18:42,342   adding 'lobster/config/providers/__init__.py'
2026-01-07T16:18:42,344   adding 'lobster/config/providers/anthropic_provider.py'
2026-01-07T16:18:42,345   adding 'lobster/config/providers/base_provider.py'
2026-01-07T16:18:42,347   adding 'lobster/config/providers/bedrock_provider.py'
2026-01-07T16:18:42,349   adding 'lobster/config/providers/gemini_provider.py'
2026-01-07T16:18:42,352   adding 'lobster/config/providers/ollama_provider.py'
2026-01-07T16:18:42,353   adding 'lobster/config/providers/registry.py'
2026-01-07T16:18:42,356   adding 'lobster/core/__init__.py'
2026-01-07T16:18:42,358   adding 'lobster/core/analysis_ir.py'
2026-01-07T16:18:42,361   adding 'lobster/core/archive_utils.py'
2026-01-07T16:18:42,371   adding 'lobster/core/client.py'
2026-01-07T16:18:42,373   adding 'lobster/core/component_registry.py'
2026-01-07T16:18:42,375   adding 'lobster/core/config_resolver.py'
2026-01-07T16:18:42,388   adding 'lobster/core/data_manager_v2.py'
2026-01-07T16:18:42,391   adding 'lobster/core/download_queue.py'
2026-01-07T16:18:42,392   adding 'lobster/core/exceptions.py'
2026-01-07T16:18:42,395   adding 'lobster/core/ir_coverage.py'
2026-01-07T16:18:42,398   adding 'lobster/core/license_manager.py'
2026-01-07T16:18:42,400   adding 'lobster/core/notebook_executor.py'
2026-01-07T16:18:42,404   adding 'lobster/core/notebook_exporter.py'
2026-01-07T16:18:42,406   adding 'lobster/core/notebook_validator.py'
2026-01-07T16:18:42,409   adding 'lobster/core/plot_manager.py'
2026-01-07T16:18:42,411   adding 'lobster/core/plugin_loader.py'
2026-01-07T16:18:42,414   adding 'lobster/core/provenance.py'
2026-01-07T16:18:42,416   adding 'lobster/core/publication_queue.py'
2026-01-07T16:18:42,418   adding 'lobster/core/queue_storage.py'
2026-01-07T16:18:42,420   adding 'lobster/core/ris_parser.py'
2026-01-07T16:18:42,422   adding 'lobster/core/workspace.py'
2026-01-07T16:18:42,423   adding 'lobster/core/adapters/__init__.py'
2026-01-07T16:18:42,426   adding 'lobster/core/adapters/base.py'
2026-01-07T16:18:42,429   adding 'lobster/core/adapters/protein_structure_adapter.py'
2026-01-07T16:18:42,432   adding 'lobster/core/adapters/proteomics_adapter.py'
2026-01-07T16:18:42,435   adding 'lobster/core/adapters/pseudobulk_adapter.py'
2026-01-07T16:18:42,438   adding 'lobster/core/adapters/transcriptomics_adapter.py'
2026-01-07T16:18:42,440   adding 'lobster/core/backends/__init__.py'
2026-01-07T16:18:42,442   adding 'lobster/core/backends/base.py'
2026-01-07T16:18:42,446   adding 'lobster/core/backends/h5ad_backend.py'
2026-01-07T16:18:42,449   adding 'lobster/core/backends/mudata_backend.py'
2026-01-07T16:18:42,451   adding 'lobster/core/identifiers/__init__.py'
2026-01-07T16:18:42,453   adding 'lobster/core/identifiers/accession_resolver.py'
2026-01-07T16:18:42,455   adding 'lobster/core/interfaces/__init__.py'
2026-01-07T16:18:42,457   adding 'lobster/core/interfaces/adapter.py'
2026-01-07T16:18:42,458   adding 'lobster/core/interfaces/backend.py'
2026-01-07T16:18:42,460   adding 'lobster/core/interfaces/base_client.py'
2026-01-07T16:18:42,462   adding 'lobster/core/interfaces/download_service.py'
2026-01-07T16:18:42,464   adding 'lobster/core/interfaces/validator.py'
2026-01-07T16:18:42,466   adding 'lobster/core/schemas/__init__.py'
2026-01-07T16:18:42,469   adding 'lobster/core/schemas/database_mappings.py'
2026-01-07T16:18:42,471   adding 'lobster/core/schemas/database_registry.py'
2026-01-07T16:18:42,473   adding 'lobster/core/schemas/download_queue.py'
2026-01-07T16:18:42,475   adding 'lobster/core/schemas/download_urls.py'
2026-01-07T16:18:42,480   adding 'lobster/core/schemas/export_schemas.py'
2026-01-07T16:18:42,484   adding 'lobster/core/schemas/metabolomics.py'
2026-01-07T16:18:42,490   adding 'lobster/core/schemas/metagenomics.py'
2026-01-07T16:18:42,492   adding 'lobster/core/schemas/protein_structure.py'
2026-01-07T16:18:42,496   adding 'lobster/core/schemas/proteomics.py'
2026-01-07T16:18:42,499   adding 'lobster/core/schemas/publication_queue.py'
2026-01-07T16:18:42,503   adding 'lobster/core/schemas/sra.py'
2026-01-07T16:18:42,510   adding 'lobster/core/schemas/transcriptomics.py'
2026-01-07T16:18:42,512   adding 'lobster/core/schemas/validation.py'
2026-01-07T16:18:42,514   adding 'lobster/core/utils/__init__.py'
2026-01-07T16:18:42,516   adding 'lobster/core/utils/h5ad_utils.py'
2026-01-07T16:18:42,518   adding 'lobster/lobster_cloud/__init__.py'
2026-01-07T16:18:42,520   adding 'lobster/lobster_cloud/client.py'
2026-01-07T16:18:42,522   adding 'lobster/services/__init__.py'
2026-01-07T16:18:42,523   adding 'lobster/services/analysis/__init__.py'
2026-01-07T16:18:42,531   adding 'lobster/services/analysis/bulk_rnaseq_service.py'
2026-01-07T16:18:42,541   adding 'lobster/services/analysis/clustering_service.py'
2026-01-07T16:18:42,546   adding 'lobster/services/analysis/differential_formula_service.py'
2026-01-07T16:18:42,552   adding 'lobster/services/analysis/enhanced_singlecell_service.py'
2026-01-07T16:18:42,556   adding 'lobster/services/analysis/pseudobulk_service.py'
2026-01-07T16:18:42,558   adding 'lobster/services/analysis/scvi_embedding_service.py'
2026-01-07T16:18:42,561   adding 'lobster/services/analysis/structure_analysis_service.py'
2026-01-07T16:18:42,563   adding 'lobster/services/data_access/__init__.py'
2026-01-07T16:18:42,571   adding 'lobster/services/data_access/content_access_service.py'
2026-01-07T16:18:42,577   adding 'lobster/services/data_access/docling_service.py'
2026-01-07T16:18:42,581   adding 'lobster/services/data_access/geo_download_service.py'
2026-01-07T16:18:42,584   adding 'lobster/services/data_access/geo_fallback_service.py'
2026-01-07T16:18:42,608   adding 'lobster/services/data_access/geo_service.py'
2026-01-07T16:18:42,612   adding 'lobster/services/data_access/massive_download_service.py'
2026-01-07T16:18:42,615   adding 'lobster/services/data_access/pride_download_service.py'
2026-01-07T16:18:42,618   adding 'lobster/services/data_access/protein_structure_fetch_service.py'
2026-01-07T16:18:42,623   adding 'lobster/services/data_access/sra_download_service.py'
2026-01-07T16:18:42,628   adding 'lobster/services/data_access/workspace_content_service.py'
2026-01-07T16:18:42,630   adding 'lobster/services/data_access/geo/__init__.py'
2026-01-07T16:18:42,632   adding 'lobster/services/data_access/geo/constants.py'
2026-01-07T16:18:42,636   adding 'lobster/services/data_access/geo/downloader.py'
2026-01-07T16:18:42,638   adding 'lobster/services/data_access/geo/facade.py'
2026-01-07T16:18:42,645   adding 'lobster/services/data_access/geo/parser.py'
2026-01-07T16:18:42,648   adding 'lobster/services/data_access/geo/strategy.py'
2026-01-07T16:18:42,650   adding 'lobster/services/data_access/geo/loaders/__init__.py'
2026-01-07T16:18:42,652   adding 'lobster/services/data_access/geo/loaders/tenx.py'
2026-01-07T16:18:42,654   adding 'lobster/services/data_access/geo/metadata/__init__.py'
2026-01-07T16:18:42,656   adding 'lobster/services/data_access/geo/sample/__init__.py'
2026-01-07T16:18:42,657   adding 'lobster/services/data_access/geo/utils/__init__.py'
2026-01-07T16:18:42,659   adding 'lobster/services/data_management/__init__.py'
2026-01-07T16:18:42,664   adding 'lobster/services/data_management/concatenation_service.py'
2026-01-07T16:18:42,667   adding 'lobster/services/data_management/modality_management_service.py'
2026-01-07T16:18:42,669   adding 'lobster/services/execution/__init__.py'
2026-01-07T16:18:42,673   adding 'lobster/services/execution/custom_code_execution_service.py'
2026-01-07T16:18:42,675   adding 'lobster/services/execution/execution_context_builder.py'
2026-01-07T16:18:42,677   adding 'lobster/services/metadata/__init__.py'
2026-01-07T16:18:42,679   adding 'lobster/services/metadata/identifier_provenance_service.py'
2026-01-07T16:18:42,683   adding 'lobster/services/metadata/manual_annotation_service.py'
2026-01-07T16:18:42,686   adding 'lobster/services/metadata/metadata_standardization_service.py'
2026-01-07T16:18:42,689   adding 'lobster/services/metadata/metadata_validation_service.py'
2026-01-07T16:18:42,691   adding 'lobster/services/metadata/sample_grouping_service.py'
2026-01-07T16:18:42,693   adding 'lobster/services/metadata/protocol_extraction/__init__.py'
2026-01-07T16:18:42,695   adding 'lobster/services/metadata/protocol_extraction/base.py'
2026-01-07T16:18:42,696   adding 'lobster/services/metadata/protocol_extraction/amplicon/__init__.py'
2026-01-07T16:18:42,698   adding 'lobster/services/metadata/protocol_extraction/amplicon/details.py'
2026-01-07T16:18:42,701   adding 'lobster/services/metadata/protocol_extraction/amplicon/service.py'
2026-01-07T16:18:42,703   adding 'lobster/services/metadata/protocol_extraction/amplicon/resources/primers.json'
2026-01-07T16:18:42,705   adding 'lobster/services/metadata/protocol_extraction/mass_spec/__init__.py'
2026-01-07T16:18:42,707   adding 'lobster/services/metadata/protocol_extraction/mass_spec/details.py'
2026-01-07T16:18:42,708   adding 'lobster/services/metadata/protocol_extraction/mass_spec/service.py'
2026-01-07T16:18:42,710   adding 'lobster/services/metadata/protocol_extraction/rnaseq/__init__.py'
2026-01-07T16:18:42,711   adding 'lobster/services/metadata/protocol_extraction/rnaseq/details.py'
2026-01-07T16:18:42,713   adding 'lobster/services/metadata/protocol_extraction/rnaseq/service.py'
2026-01-07T16:18:42,715   adding 'lobster/services/ml/__init__.py'
2026-01-07T16:18:42,716   adding 'lobster/services/orchestration/__init__.py'
2026-01-07T16:18:42,725   adding 'lobster/services/orchestration/publication_processing_service.py'
2026-01-07T16:18:42,727   adding 'lobster/services/quality/__init__.py'
2026-01-07T16:18:42,732   adding 'lobster/services/quality/preprocessing_service.py'
2026-01-07T16:18:42,736   adding 'lobster/services/quality/quality_service.py'
2026-01-07T16:18:42,738   adding 'lobster/services/templates/__init__.py'
2026-01-07T16:18:42,742   adding 'lobster/services/templates/annotation_templates.py'
2026-01-07T16:18:42,744   adding 'lobster/services/visualization/__init__.py'
2026-01-07T16:18:42,747   adding 'lobster/services/visualization/bulk_visualization_service.py'
2026-01-07T16:18:42,751   adding 'lobster/services/visualization/pymol_visualization_service.py'
2026-01-07T16:18:42,759   adding 'lobster/services/visualization/visualization_service.py'
2026-01-07T16:18:42,761   adding 'lobster/tools/__init__.py'
2026-01-07T16:18:42,764   adding 'lobster/tools/custom_code_tool.py'
2026-01-07T16:18:42,766   adding 'lobster/tools/download_orchestrator.py'
2026-01-07T16:18:42,769   adding 'lobster/tools/enhanced_handoff_tool.py'
2026-01-07T16:18:42,771   adding 'lobster/tools/expert_handoff_manager.py'
2026-01-07T16:18:42,773   adding 'lobster/tools/expert_handoff_patterns.py'
2026-01-07T16:18:42,774   adding 'lobster/tools/geo_downloader.py'
2026-01-07T16:18:42,775   adding 'lobster/tools/geo_parser.py'
2026-01-07T16:18:42,777   adding 'lobster/tools/gpu_detector.py'
2026-01-07T16:18:42,779   adding 'lobster/tools/handoff_tool.py'
2026-01-07T16:18:42,780   adding 'lobster/tools/pipeline_strategy.py'
2026-01-07T16:18:42,784   adding 'lobster/tools/rate_limiter.py'
2026-01-07T16:18:42,786   adding 'lobster/tools/todo_tools.py'
2026-01-07T16:18:42,788   adding 'lobster/tools/url_transforms.py'
2026-01-07T16:18:42,792   adding 'lobster/tools/workflow_tracker.py'
2026-01-07T16:18:42,804   adding 'lobster/tools/workspace_tool.py'
2026-01-07T16:18:42,808   adding 'lobster/tools/archive/publication_service.py'
2026-01-07T16:18:42,811   adding 'lobster/tools/archive/unified_content_service.py'
2026-01-07T16:18:42,813   adding 'lobster/tools/providers/__init__.py'
2026-01-07T16:18:42,815   adding 'lobster/tools/providers/abstract_provider.py'
2026-01-07T16:18:42,817   adding 'lobster/tools/providers/base_provider.py'
2026-01-07T16:18:42,819   adding 'lobster/tools/providers/biopython_entrez_wrapper.py'
2026-01-07T16:18:42,820   adding 'lobster/tools/providers/biorxiv_medrxiv_config.py'
2026-01-07T16:18:42,826   adding 'lobster/tools/providers/biorxiv_medrxiv_provider.py'
2026-01-07T16:18:42,832   adding 'lobster/tools/providers/geo_provider.py'
2026-01-07T16:18:42,834   adding 'lobster/tools/providers/geo_utils.py'
2026-01-07T16:18:42,836   adding 'lobster/tools/providers/massive_provider.py'
2026-01-07T16:18:42,839   adding 'lobster/tools/providers/ncbi_query_builder.py'
2026-01-07T16:18:42,841   adding 'lobster/tools/providers/organism_enum.py'
2026-01-07T16:18:42,843   adding 'lobster/tools/providers/pdb_provider.py'
2026-01-07T16:18:42,850   adding 'lobster/tools/providers/pmc_provider.py'
2026-01-07T16:18:42,853   adding 'lobster/tools/providers/pride_normalizer.py'
2026-01-07T16:18:42,856   adding 'lobster/tools/providers/pride_provider.py'
2026-01-07T16:18:42,858   adding 'lobster/tools/providers/provider_registry.py'
2026-01-07T16:18:42,861   adding 'lobster/tools/providers/publication_resolver.py'
2026-01-07T16:18:42,870   adding 'lobster/tools/providers/pubmed_provider.py'
2026-01-07T16:18:42,877   adding 'lobster/tools/providers/sra_provider.py'
2026-01-07T16:18:42,879   adding 'lobster/tools/providers/structure_provider.py'
2026-01-07T16:18:42,881   adding 'lobster/tools/providers/webpage_provider.py'
2026-01-07T16:18:42,883   adding 'lobster/ui/__init__.py'
2026-01-07T16:18:42,886   adding 'lobster/ui/commands.py'
2026-01-07T16:18:42,888   adding 'lobster/ui/console_manager.py'
2026-01-07T16:18:42,891   adding 'lobster/ui/live_dashboard.py'
2026-01-07T16:18:42,892   adding 'lobster/ui/os_app.py'
2026-01-07T16:18:42,895   adding 'lobster/ui/progress_manager.py'
2026-01-07T16:18:42,897   adding 'lobster/ui/themes.py'
2026-01-07T16:18:42,899   adding 'lobster/ui/callbacks/__init__.py'
2026-01-07T16:18:42,901   adding 'lobster/ui/callbacks/textual_callback.py'
2026-01-07T16:18:42,903   adding 'lobster/ui/components/__init__.py'
2026-01-07T16:18:42,905   adding 'lobster/ui/components/file_tree.py'
2026-01-07T16:18:42,908   adding 'lobster/ui/components/multi_progress.py'
2026-01-07T16:18:42,910   adding 'lobster/ui/components/parallel_workers_progress.py'
2026-01-07T16:18:42,913   adding 'lobster/ui/components/status_display.py'
2026-01-07T16:18:42,914   adding 'lobster/ui/formatters/__init__.py'
2026-01-07T16:18:42,916   adding 'lobster/ui/screens/__init__.py'
2026-01-07T16:18:42,920   adding 'lobster/ui/screens/analysis_screen.py'
2026-01-07T16:18:42,922   adding 'lobster/ui/services/__init__.py'
2026-01-07T16:18:42,923   adding 'lobster/ui/services/error_service.py'
2026-01-07T16:18:42,926   adding 'lobster/ui/widgets/__init__.py'
2026-01-07T16:18:42,927   adding 'lobster/ui/widgets/activity_log.py'
2026-01-07T16:18:42,929   adding 'lobster/ui/widgets/adapters_panel.py'
2026-01-07T16:18:42,930   adding 'lobster/ui/widgets/agents_panel.py'
2026-01-07T16:18:42,932   adding 'lobster/ui/widgets/chat_message.py'
2026-01-07T16:18:42,933   adding 'lobster/ui/widgets/connections_panel.py'
2026-01-07T16:18:42,936   adding 'lobster/ui/widgets/data_hub.py'
2026-01-07T16:18:42,938   adding 'lobster/ui/widgets/error_modal.py'
2026-01-07T16:18:42,940   adding 'lobster/ui/widgets/modality_list.py'
2026-01-07T16:18:42,941   adding 'lobster/ui/widgets/plot_preview.py'
2026-01-07T16:18:42,943   adding 'lobster/ui/widgets/query_prompt.py'
2026-01-07T16:18:42,944   adding 'lobster/ui/widgets/queue_panel.py'
2026-01-07T16:18:42,945   adding 'lobster/ui/widgets/queue_status_bar.py'
2026-01-07T16:18:42,947   adding 'lobster/ui/widgets/results_display.py'
2026-01-07T16:18:42,948   adding 'lobster/ui/widgets/status_bar.py'
2026-01-07T16:18:42,950   adding 'lobster/ui/widgets/system_info.py'
2026-01-07T16:18:42,951   adding 'lobster/ui/widgets/token_usage_panel.py'
2026-01-07T16:18:42,953   adding 'lobster/utils/__init__.py'
2026-01-07T16:18:42,959   adding 'lobster/utils/callbacks.py'
2026-01-07T16:18:42,961   adding 'lobster/utils/deviance.py'
2026-01-07T16:18:42,963   adding 'lobster/utils/error_handlers.py'
2026-01-07T16:18:42,966   adding 'lobster/utils/file_analyzer.py'
2026-01-07T16:18:42,968   adding 'lobster/utils/file_naming.py'
2026-01-07T16:18:42,969   adding 'lobster/utils/json_extractor.py'
2026-01-07T16:18:42,971   adding 'lobster/utils/logger.py'
2026-01-07T16:18:42,973   adding 'lobster/utils/progress_wrapper.py'
2026-01-07T16:18:42,974   adding 'lobster/utils/ssl_utils.py'
2026-01-07T16:18:42,976   adding 'lobster/utils/system.py'
2026-01-07T16:18:42,983   adding 'lobster_ai-0.4.1.1.dist-info/licenses/LICENSE'
2026-01-07T16:18:42,985   adding 'lobster_ai-0.4.1.1.dist-info/METADATA'
2026-01-07T16:18:42,987   adding 'lobster_ai-0.4.1.1.dist-info/WHEEL'
2026-01-07T16:18:42,988   adding 'lobster_ai-0.4.1.1.dist-info/entry_points.txt'
2026-01-07T16:18:42,989   adding 'lobster_ai-0.4.1.1.dist-info/top_level.txt'
2026-01-07T16:18:42,993   adding 'lobster_ai-0.4.1.1.dist-info/RECORD'
2026-01-07T16:18:43,011   removing build/bdist.linux-armv7l/wheel
2026-01-07T16:18:43,195   Building wheel for lobster-ai (pyproject.toml): finished with status 'done'
2026-01-07T16:18:43,224   Created wheel for lobster-ai: filename=lobster_ai-0.4.1.1-py3-none-any.whl size=1345576 sha256=d30d1083ded2235ea62f728b72c55b58d61c4164f9913d1996d68c451dac3c4d
2026-01-07T16:18:43,226   Stored in directory: /tmp/pip-ephem-wheel-cache-y7ma_54r/wheels/f9/f3/67/c21cbbfaa0205429e805333486389791dddfbe1018c3e18305
2026-01-07T16:18:43,252 Successfully built lobster-ai
2026-01-07T16:18:43,293 Removed build tracker: '/tmp/pip-build-tracker-y_r_mfdx'