2026-01-07T18:08:48,721 Created temporary directory: /tmp/pip-ephem-wheel-cache-du9lub1l 2026-01-07T18:08:48,722 Created temporary directory: /tmp/pip-build-tracker-xfv23ahq 2026-01-07T18:08:48,723 Initialized build tracking at /tmp/pip-build-tracker-xfv23ahq 2026-01-07T18:08:48,723 Created build tracker: /tmp/pip-build-tracker-xfv23ahq 2026-01-07T18:08:48,724 Entered build tracker: /tmp/pip-build-tracker-xfv23ahq 2026-01-07T18:08:48,725 Created temporary directory: /tmp/pip-wheel-29rife1_ 2026-01-07T18:08:48,728 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-01-07T18:08:48,730 Created temporary directory: /tmp/pip-ephem-wheel-cache-2zozb93q 2026-01-07T18:08:48,751 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-01-07T18:08:48,755 2 location(s) to search for versions of lobster-ai: 2026-01-07T18:08:48,755 * https://pypi.org/simple/lobster-ai/ 2026-01-07T18:08:48,755 * https://www.piwheels.org/simple/lobster-ai/ 2026-01-07T18:08:48,756 Fetching project page and analyzing links: https://pypi.org/simple/lobster-ai/ 2026-01-07T18:08:48,756 Getting page https://pypi.org/simple/lobster-ai/ 2026-01-07T18:08:48,758 Found index url https://pypi.org/simple 2026-01-07T18:08:48,976 Fetched page https://pypi.org/simple/lobster-ai/ as application/vnd.pypi.simple.v1+json 2026-01-07T18:08:48,980 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/25/73/1d1a25243200fd27fb678fc6ba25c4f1675657400551cb051e2f0ba608ec/lobster_ai-0.4.0.6-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-07T18:08:48,981 Found link https://files.pythonhosted.org/packages/70/bb/d1a5b8fb3972b827f824ed05220013d162bbec24be0d8bffe790e535960b/lobster_ai-0.4.0.6.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.0.6 2026-01-07T18:08:48,982 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/28/50/4706e55b526417192c7d0734f9300f26cbaa6f3404a258dc5e23932755d8/lobster_ai-0.4.0.7-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-07T18:08:48,983 Found link https://files.pythonhosted.org/packages/a8/80/ed27ba2c77f7614bf149a697b450c4828da9d56fe5c8d3f0090165bf76fc/lobster_ai-0.4.0.7.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.0.7 2026-01-07T18:08:48,984 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/d6/d8/90aa06db1b87347873b4ce21d57d45a24c7c9a7f357128242401dacf90ee/lobster_ai-0.4.0.8-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-07T18:08:48,985 Found link https://files.pythonhosted.org/packages/69/86/8a4b462df9a8118f3de7e0685672bda6cb876c8345b4434923a5c5e941ff/lobster_ai-0.4.0.8.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.0.8 2026-01-07T18:08:48,985 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/82/31/78340295ff44b67ccc4c5caaa6719063d7474604cd61fa9262fc35d4d956/lobster_ai-0.4.0.9-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-07T18:08:48,986 Found link https://files.pythonhosted.org/packages/6f/e1/d7ec868a638125f79b3f450e1ecb1b9e75ed7ba1887b51849531a4b362dc/lobster_ai-0.4.0.9.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.0.9 2026-01-07T18:08:48,987 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/34/e3/df793c9c964fd14f0e798a2b126653fe41689d96f69c0f667eaeaec3b87e/lobster_ai-0.4.1.1-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-07T18:08:48,988 Found link https://files.pythonhosted.org/packages/3d/08/0884cc34aeec5b95e5d0b58f69dd05ff17ff21a3abfe6a24180066dd8bff/lobster_ai-0.4.1.1.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.1.1 2026-01-07T18:08:48,989 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/dc/16/d16ef722f81cf4491dc14a10a7e1bd220f6e015f7096c449f0b46953eef3/lobster_ai-0.4.1.2-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-07T18:08:48,990 Found link https://files.pythonhosted.org/packages/26/99/4ba848c11cfd7e2ce9603618c1752cd9a0b6efb80e10057f29cc5f8bcd99/lobster_ai-0.4.1.2.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.1.2 2026-01-07T18:08:48,990 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/c7/1e/4907d9395f6cd0423f68ae362692a305f1667f39cbb14748e2445198c84c/lobster_ai-0.4.1.3-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-07T18:08:48,991 Found link https://files.pythonhosted.org/packages/bf/27/ee3a39812b4ef948a1c918a961b3226551f295303cc9ba81958d83917238/lobster_ai-0.4.1.3.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.1.3 2026-01-07T18:08:48,992 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/bf/b4/ac38db54d1442ddba719f431bb2b6a2396b696617b6701cb8326dc81b8f6/lobster_ai-0.4.1.4-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-07T18:08:48,992 Found link https://files.pythonhosted.org/packages/25/76/dd6e0450e6ba1cae1eeb0956576d5d07bd08b40d7005b9c768b756af7484/lobster_ai-0.4.1.4.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.1.4 2026-01-07T18:08:48,993 Fetching project page and analyzing links: https://www.piwheels.org/simple/lobster-ai/ 2026-01-07T18:08:48,994 Getting page https://www.piwheels.org/simple/lobster-ai/ 2026-01-07T18:08:48,995 Found index url https://www.piwheels.org/simple 2026-01-07T18:08:49,159 Fetched page https://www.piwheels.org/simple/lobster-ai/ as text/html 2026-01-07T18:08:49,161 Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.1.1-py3-none-any.whl#sha256=d30d1083ded2235ea62f728b72c55b58d61c4164f9913d1996d68c451dac3c4d (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-07T18:08:49,162 Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.0.9-py3-none-any.whl#sha256=48a46075806c2941d705fa7eb0da81c1c162cc4b62b1bc22b578315363b4de75 (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-07T18:08:49,162 Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.0.8-py3-none-any.whl#sha256=a66d81b7558824d17ab891c3a592ceb8ee53492f413d9cfdd89bdecd8fd1de85 (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-07T18:08:49,163 Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.0.7-py3-none-any.whl#sha256=cbee755d3f7ac5e1cd5b65bfe0309faa4acba90c1a6a1b32036010c45f0868d9 (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-07T18:08:49,164 Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.0.6-py3-none-any.whl#sha256=2d937b84c8a017772656d9ca05d13ea77671ba5c8b1eccb92e4129465a975502 (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-07T18:08:49,164 Skipping link: not a file: https://www.piwheels.org/simple/lobster-ai/ 2026-01-07T18:08:49,165 Skipping link: not a file: https://pypi.org/simple/lobster-ai/ 2026-01-07T18:08:49,185 Given no hashes to check 1 links for project 'lobster-ai': discarding no candidates 2026-01-07T18:08:49,203 Collecting lobster-ai==0.4.1.2 2026-01-07T18:08:49,205 Created temporary directory: /tmp/pip-unpack-4msj0gka 2026-01-07T18:08:49,441 Downloading lobster_ai-0.4.1.2.tar.gz (1.2 MB) 2026-01-07T18:08:50,424 Added lobster-ai==0.4.1.2 from https://files.pythonhosted.org/packages/26/99/4ba848c11cfd7e2ce9603618c1752cd9a0b6efb80e10057f29cc5f8bcd99/lobster_ai-0.4.1.2.tar.gz to build tracker '/tmp/pip-build-tracker-xfv23ahq' 2026-01-07T18:08:50,433 Created temporary directory: /tmp/pip-build-env-h0cu7rrx 2026-01-07T18:08:50,437 Installing build dependencies: started 2026-01-07T18:08:50,438 Running command pip subprocess to install build dependencies 2026-01-07T18:08:51,602 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-01-07T18:08:52,256 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-01-07T18:08:52,280 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-01-07T18:08:54,016 Collecting setuptools>=65.0 2026-01-07T18:08:54,113 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2026-01-07T18:08:54,410 Collecting wheel 2026-01-07T18:08:54,428 Using cached https://www.piwheels.org/simple/wheel/wheel-0.45.1-py3-none-any.whl (72 kB) 2026-01-07T18:08:57,448 Installing collected packages: wheel, setuptools 2026-01-07T18:08:57,696 Creating /tmp/pip-build-env-h0cu7rrx/overlay/local/bin 2026-01-07T18:08:57,698 changing mode of /tmp/pip-build-env-h0cu7rrx/overlay/local/bin/wheel to 755 2026-01-07T18:09:01,257 Successfully installed setuptools-80.9.0 wheel-0.45.1 2026-01-07T18:09:01,542 Installing build dependencies: finished with status 'done' 2026-01-07T18:09:01,550 Getting requirements to build wheel: started 2026-01-07T18:09:01,551 Running command Getting requirements to build wheel 2026-01-07T18:09:02,232 /tmp/pip-build-env-h0cu7rrx/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `license` overwritten by `pyproject.toml` 2026-01-07T18:09:02,232 corresp(dist, value, root_dir) 2026-01-07T18:09:02,233 /tmp/pip-build-env-h0cu7rrx/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2026-01-07T18:09:02,233 corresp(dist, value, root_dir) 2026-01-07T18:09:02,234 /tmp/pip-build-env-h0cu7rrx/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `extras_require` overwritten in `pyproject.toml` (optional-dependencies) 2026-01-07T18:09:02,235 corresp(dist, value, root_dir) 2026-01-07T18:09:02,343 running egg_info 2026-01-07T18:09:02,350 writing lobster_ai.egg-info/PKG-INFO 2026-01-07T18:09:02,380 writing dependency_links to lobster_ai.egg-info/dependency_links.txt 2026-01-07T18:09:02,382 writing entry points to lobster_ai.egg-info/entry_points.txt 2026-01-07T18:09:02,401 writing requirements to lobster_ai.egg-info/requires.txt 2026-01-07T18:09:02,403 writing top-level names to lobster_ai.egg-info/top_level.txt 2026-01-07T18:09:02,543 reading manifest file 'lobster_ai.egg-info/SOURCES.txt' 2026-01-07T18:09:02,560 adding license file 'LICENSE' 2026-01-07T18:09:02,574 writing manifest file 'lobster_ai.egg-info/SOURCES.txt' 2026-01-07T18:09:02,674 Getting requirements to build wheel: finished with status 'done' 2026-01-07T18:09:02,677 Created temporary directory: /tmp/pip-modern-metadata-4m5vq002 2026-01-07T18:09:02,679 Preparing metadata (pyproject.toml): started 2026-01-07T18:09:02,680 Running command Preparing metadata (pyproject.toml) 2026-01-07T18:09:03,325 /tmp/pip-build-env-h0cu7rrx/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `license` overwritten by `pyproject.toml` 2026-01-07T18:09:03,326 corresp(dist, value, root_dir) 2026-01-07T18:09:03,326 /tmp/pip-build-env-h0cu7rrx/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2026-01-07T18:09:03,327 corresp(dist, value, root_dir) 2026-01-07T18:09:03,327 /tmp/pip-build-env-h0cu7rrx/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `extras_require` overwritten in `pyproject.toml` (optional-dependencies) 2026-01-07T18:09:03,328 corresp(dist, value, root_dir) 2026-01-07T18:09:03,429 running dist_info 2026-01-07T18:09:03,441 creating /tmp/pip-modern-metadata-4m5vq002/lobster_ai.egg-info 2026-01-07T18:09:03,442 writing /tmp/pip-modern-metadata-4m5vq002/lobster_ai.egg-info/PKG-INFO 2026-01-07T18:09:03,473 writing dependency_links to /tmp/pip-modern-metadata-4m5vq002/lobster_ai.egg-info/dependency_links.txt 2026-01-07T18:09:03,474 writing entry points to /tmp/pip-modern-metadata-4m5vq002/lobster_ai.egg-info/entry_points.txt 2026-01-07T18:09:03,493 writing requirements to /tmp/pip-modern-metadata-4m5vq002/lobster_ai.egg-info/requires.txt 2026-01-07T18:09:03,494 writing top-level names to /tmp/pip-modern-metadata-4m5vq002/lobster_ai.egg-info/top_level.txt 2026-01-07T18:09:03,496 writing manifest file '/tmp/pip-modern-metadata-4m5vq002/lobster_ai.egg-info/SOURCES.txt' 2026-01-07T18:09:03,683 reading manifest file '/tmp/pip-modern-metadata-4m5vq002/lobster_ai.egg-info/SOURCES.txt' 2026-01-07T18:09:03,686 adding license file 'LICENSE' 2026-01-07T18:09:03,696 writing manifest file '/tmp/pip-modern-metadata-4m5vq002/lobster_ai.egg-info/SOURCES.txt' 2026-01-07T18:09:03,699 creating '/tmp/pip-modern-metadata-4m5vq002/lobster_ai-0.4.1.2.dist-info' 2026-01-07T18:09:04,001 Preparing metadata (pyproject.toml): finished with status 'done' 2026-01-07T18:09:04,008 Source in /tmp/pip-wheel-29rife1_/lobster-ai_75e22eef54824fbfa7576c6434b4a13f has version 0.4.1.2, which satisfies requirement lobster-ai==0.4.1.2 from https://files.pythonhosted.org/packages/26/99/4ba848c11cfd7e2ce9603618c1752cd9a0b6efb80e10057f29cc5f8bcd99/lobster_ai-0.4.1.2.tar.gz 2026-01-07T18:09:04,009 Removed lobster-ai==0.4.1.2 from https://files.pythonhosted.org/packages/26/99/4ba848c11cfd7e2ce9603618c1752cd9a0b6efb80e10057f29cc5f8bcd99/lobster_ai-0.4.1.2.tar.gz from build tracker '/tmp/pip-build-tracker-xfv23ahq' 2026-01-07T18:09:04,019 Created temporary directory: /tmp/pip-unpack-audc73vh 2026-01-07T18:09:04,020 Building wheels for collected packages: lobster-ai 2026-01-07T18:09:04,024 Created temporary directory: /tmp/pip-wheel-245gcmt0 2026-01-07T18:09:04,025 Destination directory: /tmp/pip-wheel-245gcmt0 2026-01-07T18:09:04,027 Building wheel for lobster-ai (pyproject.toml): started 2026-01-07T18:09:04,028 Running command Building wheel for lobster-ai (pyproject.toml) 2026-01-07T18:09:04,648 /tmp/pip-build-env-h0cu7rrx/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `license` overwritten by `pyproject.toml` 2026-01-07T18:09:04,648 corresp(dist, value, root_dir) 2026-01-07T18:09:04,649 /tmp/pip-build-env-h0cu7rrx/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2026-01-07T18:09:04,649 corresp(dist, value, root_dir) 2026-01-07T18:09:04,650 /tmp/pip-build-env-h0cu7rrx/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `extras_require` overwritten in `pyproject.toml` (optional-dependencies) 2026-01-07T18:09:04,651 corresp(dist, value, root_dir) 2026-01-07T18:09:04,742 running bdist_wheel 2026-01-07T18:09:04,762 running build 2026-01-07T18:09:04,763 running build_py 2026-01-07T18:09:04,770 creating build/lib/lobster 2026-01-07T18:09:04,772 copying lobster/version.py -> build/lib/lobster 2026-01-07T18:09:04,773 copying lobster/main.py -> build/lib/lobster 2026-01-07T18:09:04,775 copying lobster/__main__.py -> build/lib/lobster 2026-01-07T18:09:04,777 copying lobster/cli.py -> build/lib/lobster 2026-01-07T18:09:04,783 copying lobster/_version.py -> build/lib/lobster 2026-01-07T18:09:04,785 creating build/lib/lobster/cli_internal 2026-01-07T18:09:04,786 copying lobster/cli_internal/__init__.py -> build/lib/lobster/cli_internal 2026-01-07T18:09:04,788 creating build/lib/lobster/ui 2026-01-07T18:09:04,789 copying lobster/ui/__init__.py -> build/lib/lobster/ui 2026-01-07T18:09:04,791 copying lobster/ui/progress_manager.py -> build/lib/lobster/ui 2026-01-07T18:09:04,794 copying lobster/ui/commands.py -> build/lib/lobster/ui 2026-01-07T18:09:04,796 copying lobster/ui/themes.py -> build/lib/lobster/ui 2026-01-07T18:09:04,799 copying lobster/ui/os_app.py -> build/lib/lobster/ui 2026-01-07T18:09:04,801 copying lobster/ui/live_dashboard.py -> build/lib/lobster/ui 2026-01-07T18:09:04,803 copying lobster/ui/console_manager.py -> build/lib/lobster/ui 2026-01-07T18:09:04,806 creating build/lib/lobster/lobster_cloud 2026-01-07T18:09:04,807 copying lobster/lobster_cloud/__init__.py -> build/lib/lobster/lobster_cloud 2026-01-07T18:09:04,809 copying lobster/lobster_cloud/client.py -> build/lib/lobster/lobster_cloud 2026-01-07T18:09:04,813 creating build/lib/lobster/core 2026-01-07T18:09:04,815 copying lobster/core/plot_manager.py -> build/lib/lobster/core 2026-01-07T18:09:04,819 copying lobster/core/notebook_exporter.py -> build/lib/lobster/core 2026-01-07T18:09:04,821 copying lobster/core/publication_queue.py -> build/lib/lobster/core 2026-01-07T18:09:04,824 copying lobster/core/provenance.py -> build/lib/lobster/core 2026-01-07T18:09:04,826 copying lobster/core/plugin_loader.py -> build/lib/lobster/core 2026-01-07T18:09:04,829 copying lobster/core/download_queue.py -> build/lib/lobster/core 2026-01-07T18:09:04,831 copying lobster/core/archive_utils.py -> build/lib/lobster/core 2026-01-07T18:09:04,834 copying lobster/core/__init__.py -> build/lib/lobster/core 2026-01-07T18:09:04,835 copying lobster/core/ris_parser.py -> build/lib/lobster/core 2026-01-07T18:09:04,838 copying lobster/core/config_resolver.py -> build/lib/lobster/core 2026-01-07T18:09:04,841 copying lobster/core/ir_coverage.py -> build/lib/lobster/core 2026-01-07T18:09:04,843 copying lobster/core/notebook_validator.py -> build/lib/lobster/core 2026-01-07T18:09:04,846 copying lobster/core/queue_storage.py -> build/lib/lobster/core 2026-01-07T18:09:04,847 copying lobster/core/analysis_ir.py -> build/lib/lobster/core 2026-01-07T18:09:04,850 copying lobster/core/workspace.py -> build/lib/lobster/core 2026-01-07T18:09:04,852 copying lobster/core/notebook_executor.py -> build/lib/lobster/core 2026-01-07T18:09:04,854 copying lobster/core/exceptions.py -> build/lib/lobster/core 2026-01-07T18:09:04,857 copying lobster/core/client.py -> build/lib/lobster/core 2026-01-07T18:09:04,860 copying lobster/core/data_manager_v2.py -> build/lib/lobster/core 2026-01-07T18:09:04,864 copying lobster/core/component_registry.py -> build/lib/lobster/core 2026-01-07T18:09:04,866 copying lobster/core/license_manager.py -> build/lib/lobster/core 2026-01-07T18:09:04,870 creating build/lib/lobster/utils 2026-01-07T18:09:04,870 copying lobster/utils/file_analyzer.py -> build/lib/lobster/utils 2026-01-07T18:09:04,873 copying lobster/utils/__init__.py -> build/lib/lobster/utils 2026-01-07T18:09:04,875 copying lobster/utils/progress_wrapper.py -> build/lib/lobster/utils 2026-01-07T18:09:04,877 copying lobster/utils/ssl_utils.py -> build/lib/lobster/utils 2026-01-07T18:09:04,879 copying lobster/utils/deviance.py -> build/lib/lobster/utils 2026-01-07T18:09:04,881 copying lobster/utils/error_handlers.py -> build/lib/lobster/utils 2026-01-07T18:09:04,884 copying lobster/utils/system.py -> build/lib/lobster/utils 2026-01-07T18:09:04,886 copying lobster/utils/logger.py -> build/lib/lobster/utils 2026-01-07T18:09:04,887 copying lobster/utils/callbacks.py -> build/lib/lobster/utils 2026-01-07T18:09:04,890 copying lobster/utils/json_extractor.py -> build/lib/lobster/utils 2026-01-07T18:09:04,893 copying lobster/utils/file_naming.py -> build/lib/lobster/utils 2026-01-07T18:09:04,896 creating build/lib/lobster/config 2026-01-07T18:09:04,897 copying lobster/config/llm_factory.py -> build/lib/lobster/config 2026-01-07T18:09:04,899 copying lobster/config/supervisor_config.py -> build/lib/lobster/config 2026-01-07T18:09:04,901 copying lobster/config/constants.py -> build/lib/lobster/config 2026-01-07T18:09:04,903 copying lobster/config/config_manager.py -> build/lib/lobster/config 2026-01-07T18:09:04,905 copying lobster/config/__init__.py -> build/lib/lobster/config 2026-01-07T18:09:04,907 copying lobster/config/workspace_config.py -> build/lib/lobster/config 2026-01-07T18:09:04,909 copying lobster/config/provider_setup.py -> build/lib/lobster/config 2026-01-07T18:09:04,912 copying lobster/config/base_config.py -> build/lib/lobster/config 2026-01-07T18:09:04,913 copying lobster/config/agent_registry.py -> build/lib/lobster/config 2026-01-07T18:09:04,916 copying lobster/config/global_config.py -> build/lib/lobster/config 2026-01-07T18:09:04,918 copying lobster/config/model_service.py -> build/lib/lobster/config 2026-01-07T18:09:04,920 copying lobster/config/agent_config.py -> build/lib/lobster/config 2026-01-07T18:09:04,923 copying lobster/config/ollama_service.py -> build/lib/lobster/config 2026-01-07T18:09:04,925 copying lobster/config/agent_capabilities.py -> build/lib/lobster/config 2026-01-07T18:09:04,927 copying lobster/config/subscription_tiers.py -> build/lib/lobster/config 2026-01-07T18:09:04,930 copying lobster/config/settings.py -> build/lib/lobster/config 2026-01-07T18:09:04,933 creating build/lib/lobster/tools 2026-01-07T18:09:04,934 copying lobster/tools/__init__.py -> build/lib/lobster/tools 2026-01-07T18:09:04,936 copying lobster/tools/expert_handoff_manager.py -> build/lib/lobster/tools 2026-01-07T18:09:04,938 copying lobster/tools/geo_parser.py -> build/lib/lobster/tools 2026-01-07T18:09:04,940 copying lobster/tools/enhanced_handoff_tool.py -> build/lib/lobster/tools 2026-01-07T18:09:04,943 copying lobster/tools/url_transforms.py -> build/lib/lobster/tools 2026-01-07T18:09:04,945 copying lobster/tools/workspace_tool.py -> build/lib/lobster/tools 2026-01-07T18:09:04,949 copying lobster/tools/gpu_detector.py -> build/lib/lobster/tools 2026-01-07T18:09:04,951 copying lobster/tools/workflow_tracker.py -> build/lib/lobster/tools 2026-01-07T18:09:04,953 copying lobster/tools/handoff_tool.py -> build/lib/lobster/tools 2026-01-07T18:09:04,956 copying lobster/tools/download_orchestrator.py -> build/lib/lobster/tools 2026-01-07T18:09:04,958 copying lobster/tools/todo_tools.py -> build/lib/lobster/tools 2026-01-07T18:09:04,960 copying lobster/tools/custom_code_tool.py -> build/lib/lobster/tools 2026-01-07T18:09:04,963 copying lobster/tools/expert_handoff_patterns.py -> build/lib/lobster/tools 2026-01-07T18:09:04,965 copying lobster/tools/geo_downloader.py -> build/lib/lobster/tools 2026-01-07T18:09:04,967 copying lobster/tools/rate_limiter.py -> build/lib/lobster/tools 2026-01-07T18:09:04,970 copying lobster/tools/pipeline_strategy.py -> build/lib/lobster/tools 2026-01-07T18:09:04,972 creating build/lib/lobster/agents 2026-01-07T18:09:04,973 copying lobster/agents/supervisor.py -> build/lib/lobster/agents 2026-01-07T18:09:04,976 copying lobster/agents/visualization_expert.py -> build/lib/lobster/agents 2026-01-07T18:09:04,979 copying lobster/agents/__init__.py -> build/lib/lobster/agents 2026-01-07T18:09:04,980 copying lobster/agents/draw_graph.py -> build/lib/lobster/agents 2026-01-07T18:09:04,982 copying lobster/agents/data_expert.py -> build/lib/lobster/agents 2026-01-07T18:09:04,985 copying lobster/agents/research_agent.py -> build/lib/lobster/agents 2026-01-07T18:09:04,990 copying lobster/agents/data_expert_assistant.py -> build/lib/lobster/agents 2026-01-07T18:09:04,993 copying lobster/agents/state.py -> build/lib/lobster/agents 2026-01-07T18:09:04,995 copying lobster/agents/graph.py -> build/lib/lobster/agents 2026-01-07T18:09:04,998 creating build/lib/lobster/services 2026-01-07T18:09:04,999 copying lobster/services/__init__.py -> build/lib/lobster/services 2026-01-07T18:09:05,001 creating build/lib/lobster/cli_internal/commands 2026-01-07T18:09:05,002 copying lobster/cli_internal/commands/__init__.py -> build/lib/lobster/cli_internal/commands 2026-01-07T18:09:05,004 copying lobster/cli_internal/commands/output_adapter.py -> build/lib/lobster/cli_internal/commands 2026-01-07T18:09:05,007 creating build/lib/lobster/cli_internal/utils 2026-01-07T18:09:05,008 copying lobster/cli_internal/utils/path_resolution.py -> build/lib/lobster/cli_internal/utils 2026-01-07T18:09:05,010 copying lobster/cli_internal/utils/__init__.py -> build/lib/lobster/cli_internal/utils 2026-01-07T18:09:05,013 creating build/lib/lobster/cli_internal/commands/light 2026-01-07T18:09:05,014 copying lobster/cli_internal/commands/light/pipeline_commands.py -> build/lib/lobster/cli_internal/commands/light 2026-01-07T18:09:05,016 copying lobster/cli_internal/commands/light/workspace_commands.py -> build/lib/lobster/cli_internal/commands/light 2026-01-07T18:09:05,019 copying lobster/cli_internal/commands/light/__init__.py -> build/lib/lobster/cli_internal/commands/light 2026-01-07T18:09:05,021 copying lobster/cli_internal/commands/light/config_commands.py -> build/lib/lobster/cli_internal/commands/light 2026-01-07T18:09:05,023 copying lobster/cli_internal/commands/light/queue_commands.py -> build/lib/lobster/cli_internal/commands/light 2026-01-07T18:09:05,026 copying lobster/cli_internal/commands/light/file_commands.py -> build/lib/lobster/cli_internal/commands/light 2026-01-07T18:09:05,029 copying lobster/cli_internal/commands/light/metadata_commands.py -> build/lib/lobster/cli_internal/commands/light 2026-01-07T18:09:05,031 creating build/lib/lobster/cli_internal/commands/heavy 2026-01-07T18:09:05,032 copying lobster/cli_internal/commands/heavy/data_commands.py -> build/lib/lobster/cli_internal/commands/heavy 2026-01-07T18:09:05,035 copying lobster/cli_internal/commands/heavy/__init__.py -> build/lib/lobster/cli_internal/commands/heavy 2026-01-07T18:09:05,037 copying lobster/cli_internal/commands/heavy/modality_commands.py -> build/lib/lobster/cli_internal/commands/heavy 2026-01-07T18:09:05,039 copying lobster/cli_internal/commands/heavy/visualization_commands.py -> build/lib/lobster/cli_internal/commands/heavy 2026-01-07T18:09:05,042 creating build/lib/lobster/ui/components 2026-01-07T18:09:05,043 copying lobster/ui/components/__init__.py -> build/lib/lobster/ui/components 2026-01-07T18:09:05,045 copying lobster/ui/components/parallel_workers_progress.py -> build/lib/lobster/ui/components 2026-01-07T18:09:05,047 copying lobster/ui/components/multi_progress.py -> build/lib/lobster/ui/components 2026-01-07T18:09:05,050 copying lobster/ui/components/file_tree.py -> build/lib/lobster/ui/components 2026-01-07T18:09:05,052 copying lobster/ui/components/status_display.py -> build/lib/lobster/ui/components 2026-01-07T18:09:05,055 creating build/lib/lobster/ui/formatters 2026-01-07T18:09:05,056 copying lobster/ui/formatters/__init__.py -> build/lib/lobster/ui/formatters 2026-01-07T18:09:05,059 creating build/lib/lobster/ui/widgets 2026-01-07T18:09:05,060 copying lobster/ui/widgets/results_display.py -> build/lib/lobster/ui/widgets 2026-01-07T18:09:05,062 copying lobster/ui/widgets/modality_list.py -> build/lib/lobster/ui/widgets 2026-01-07T18:09:05,064 copying lobster/ui/widgets/queue_status_bar.py -> build/lib/lobster/ui/widgets 2026-01-07T18:09:05,066 copying lobster/ui/widgets/data_hub.py -> build/lib/lobster/ui/widgets 2026-01-07T18:09:05,069 copying lobster/ui/widgets/__init__.py -> build/lib/lobster/ui/widgets 2026-01-07T18:09:05,071 copying lobster/ui/widgets/query_prompt.py -> build/lib/lobster/ui/widgets 2026-01-07T18:09:05,073 copying lobster/ui/widgets/activity_log.py -> build/lib/lobster/ui/widgets 2026-01-07T18:09:05,075 copying lobster/ui/widgets/adapters_panel.py -> build/lib/lobster/ui/widgets 2026-01-07T18:09:05,077 copying lobster/ui/widgets/token_usage_panel.py -> build/lib/lobster/ui/widgets 2026-01-07T18:09:05,079 copying lobster/ui/widgets/system_info.py -> build/lib/lobster/ui/widgets 2026-01-07T18:09:05,081 copying lobster/ui/widgets/plot_preview.py -> build/lib/lobster/ui/widgets 2026-01-07T18:09:05,083 copying lobster/ui/widgets/connections_panel.py -> build/lib/lobster/ui/widgets 2026-01-07T18:09:05,085 copying lobster/ui/widgets/status_bar.py -> build/lib/lobster/ui/widgets 2026-01-07T18:09:05,087 copying lobster/ui/widgets/chat_message.py -> build/lib/lobster/ui/widgets 2026-01-07T18:09:05,089 copying lobster/ui/widgets/agents_panel.py -> build/lib/lobster/ui/widgets 2026-01-07T18:09:05,092 copying lobster/ui/widgets/error_modal.py -> build/lib/lobster/ui/widgets 2026-01-07T18:09:05,094 copying lobster/ui/widgets/queue_panel.py -> build/lib/lobster/ui/widgets 2026-01-07T18:09:05,096 creating build/lib/lobster/ui/callbacks 2026-01-07T18:09:05,097 copying lobster/ui/callbacks/textual_callback.py -> build/lib/lobster/ui/callbacks 2026-01-07T18:09:05,100 copying lobster/ui/callbacks/__init__.py -> build/lib/lobster/ui/callbacks 2026-01-07T18:09:05,102 creating build/lib/lobster/ui/services 2026-01-07T18:09:05,103 copying lobster/ui/services/__init__.py -> build/lib/lobster/ui/services 2026-01-07T18:09:05,105 copying lobster/ui/services/error_service.py -> build/lib/lobster/ui/services 2026-01-07T18:09:05,107 creating build/lib/lobster/ui/screens 2026-01-07T18:09:05,109 copying lobster/ui/screens/analysis_screen.py -> build/lib/lobster/ui/screens 2026-01-07T18:09:05,112 copying lobster/ui/screens/__init__.py -> build/lib/lobster/ui/screens 2026-01-07T18:09:05,115 creating build/lib/lobster/core/interfaces 2026-01-07T18:09:05,116 copying lobster/core/interfaces/backend.py -> build/lib/lobster/core/interfaces 2026-01-07T18:09:05,118 copying lobster/core/interfaces/__init__.py -> build/lib/lobster/core/interfaces 2026-01-07T18:09:05,120 copying lobster/core/interfaces/download_service.py -> build/lib/lobster/core/interfaces 2026-01-07T18:09:05,123 copying lobster/core/interfaces/validator.py -> build/lib/lobster/core/interfaces 2026-01-07T18:09:05,126 copying lobster/core/interfaces/base_client.py -> build/lib/lobster/core/interfaces 2026-01-07T18:09:05,129 copying lobster/core/interfaces/adapter.py -> build/lib/lobster/core/interfaces 2026-01-07T18:09:05,132 creating build/lib/lobster/core/identifiers 2026-01-07T18:09:05,133 copying lobster/core/identifiers/accession_resolver.py -> build/lib/lobster/core/identifiers 2026-01-07T18:09:05,136 copying lobster/core/identifiers/__init__.py -> build/lib/lobster/core/identifiers 2026-01-07T18:09:05,138 creating build/lib/lobster/core/utils 2026-01-07T18:09:05,140 copying lobster/core/utils/__init__.py -> build/lib/lobster/core/utils 2026-01-07T18:09:05,142 copying lobster/core/utils/h5ad_utils.py -> build/lib/lobster/core/utils 2026-01-07T18:09:05,145 creating build/lib/lobster/core/backends 2026-01-07T18:09:05,147 copying lobster/core/backends/mudata_backend.py -> build/lib/lobster/core/backends 2026-01-07T18:09:05,150 copying lobster/core/backends/__init__.py -> build/lib/lobster/core/backends 2026-01-07T18:09:05,152 copying lobster/core/backends/h5ad_backend.py -> build/lib/lobster/core/backends 2026-01-07T18:09:05,155 copying lobster/core/backends/base.py -> build/lib/lobster/core/backends 2026-01-07T18:09:05,159 creating build/lib/lobster/core/schemas 2026-01-07T18:09:05,160 copying lobster/core/schemas/metagenomics.py -> build/lib/lobster/core/schemas 2026-01-07T18:09:05,165 copying lobster/core/schemas/proteomics.py -> build/lib/lobster/core/schemas 2026-01-07T18:09:05,168 copying lobster/core/schemas/publication_queue.py -> build/lib/lobster/core/schemas 2026-01-07T18:09:05,171 copying lobster/core/schemas/export_schemas.py -> build/lib/lobster/core/schemas 2026-01-07T18:09:05,174 copying lobster/core/schemas/download_queue.py -> build/lib/lobster/core/schemas 2026-01-07T18:09:05,177 copying lobster/core/schemas/__init__.py -> build/lib/lobster/core/schemas 2026-01-07T18:09:05,179 copying lobster/core/schemas/transcriptomics.py -> build/lib/lobster/core/schemas 2026-01-07T18:09:05,183 copying lobster/core/schemas/metabolomics.py -> build/lib/lobster/core/schemas 2026-01-07T18:09:05,186 copying lobster/core/schemas/validation.py -> build/lib/lobster/core/schemas 2026-01-07T18:09:05,189 copying lobster/core/schemas/database_mappings.py -> build/lib/lobster/core/schemas 2026-01-07T18:09:05,192 copying lobster/core/schemas/database_registry.py -> build/lib/lobster/core/schemas 2026-01-07T18:09:05,195 copying lobster/core/schemas/sra.py -> build/lib/lobster/core/schemas 2026-01-07T18:09:05,198 copying lobster/core/schemas/protein_structure.py -> build/lib/lobster/core/schemas 2026-01-07T18:09:05,201 copying lobster/core/schemas/download_urls.py -> build/lib/lobster/core/schemas 2026-01-07T18:09:05,204 creating build/lib/lobster/core/adapters 2026-01-07T18:09:05,205 copying lobster/core/adapters/protein_structure_adapter.py -> build/lib/lobster/core/adapters 2026-01-07T18:09:05,208 copying lobster/core/adapters/__init__.py -> build/lib/lobster/core/adapters 2026-01-07T18:09:05,210 copying lobster/core/adapters/proteomics_adapter.py -> build/lib/lobster/core/adapters 2026-01-07T18:09:05,213 copying lobster/core/adapters/transcriptomics_adapter.py -> build/lib/lobster/core/adapters 2026-01-07T18:09:05,216 copying lobster/core/adapters/base.py -> build/lib/lobster/core/adapters 2026-01-07T18:09:05,219 copying lobster/core/adapters/pseudobulk_adapter.py -> build/lib/lobster/core/adapters 2026-01-07T18:09:05,222 creating build/lib/lobster/config/providers 2026-01-07T18:09:05,223 copying lobster/config/providers/__init__.py -> build/lib/lobster/config/providers 2026-01-07T18:09:05,226 copying lobster/config/providers/base_provider.py -> build/lib/lobster/config/providers 2026-01-07T18:09:05,228 copying lobster/config/providers/gemini_provider.py -> build/lib/lobster/config/providers 2026-01-07T18:09:05,231 copying lobster/config/providers/bedrock_provider.py -> build/lib/lobster/config/providers 2026-01-07T18:09:05,234 copying lobster/config/providers/anthropic_provider.py -> build/lib/lobster/config/providers 2026-01-07T18:09:05,237 copying lobster/config/providers/ollama_provider.py -> build/lib/lobster/config/providers 2026-01-07T18:09:05,239 copying lobster/config/providers/registry.py -> build/lib/lobster/config/providers 2026-01-07T18:09:05,242 creating build/lib/lobster/tools/archive 2026-01-07T18:09:05,244 copying lobster/tools/archive/publication_service.py -> build/lib/lobster/tools/archive 2026-01-07T18:09:05,247 copying lobster/tools/archive/unified_content_service.py -> build/lib/lobster/tools/archive 2026-01-07T18:09:05,251 creating build/lib/lobster/tools/providers 2026-01-07T18:09:05,252 copying lobster/tools/providers/pride_provider.py -> build/lib/lobster/tools/providers 2026-01-07T18:09:05,255 copying lobster/tools/providers/geo_utils.py -> build/lib/lobster/tools/providers 2026-01-07T18:09:05,258 copying lobster/tools/providers/pubmed_provider.py -> build/lib/lobster/tools/providers 2026-01-07T18:09:05,262 copying lobster/tools/providers/biopython_entrez_wrapper.py -> build/lib/lobster/tools/providers 2026-01-07T18:09:05,265 copying lobster/tools/providers/__init__.py -> build/lib/lobster/tools/providers 2026-01-07T18:09:05,267 copying lobster/tools/providers/pmc_provider.py -> build/lib/lobster/tools/providers 2026-01-07T18:09:05,270 copying lobster/tools/providers/base_provider.py -> build/lib/lobster/tools/providers 2026-01-07T18:09:05,273 copying lobster/tools/providers/provider_registry.py -> build/lib/lobster/tools/providers 2026-01-07T18:09:05,276 copying lobster/tools/providers/structure_provider.py -> build/lib/lobster/tools/providers 2026-01-07T18:09:05,278 copying lobster/tools/providers/webpage_provider.py -> build/lib/lobster/tools/providers 2026-01-07T18:09:05,281 copying lobster/tools/providers/sra_provider.py -> build/lib/lobster/tools/providers 2026-01-07T18:09:05,285 copying lobster/tools/providers/pride_normalizer.py -> build/lib/lobster/tools/providers 2026-01-07T18:09:05,288 copying lobster/tools/providers/organism_enum.py -> build/lib/lobster/tools/providers 2026-01-07T18:09:05,290 copying lobster/tools/providers/massive_provider.py -> build/lib/lobster/tools/providers 2026-01-07T18:09:05,293 copying lobster/tools/providers/biorxiv_medrxiv_config.py -> build/lib/lobster/tools/providers 2026-01-07T18:09:05,295 copying lobster/tools/providers/publication_resolver.py -> build/lib/lobster/tools/providers 2026-01-07T18:09:05,298 copying lobster/tools/providers/geo_provider.py -> build/lib/lobster/tools/providers 2026-01-07T18:09:05,302 copying lobster/tools/providers/biorxiv_medrxiv_provider.py -> build/lib/lobster/tools/providers 2026-01-07T18:09:05,305 copying lobster/tools/providers/abstract_provider.py -> build/lib/lobster/tools/providers 2026-01-07T18:09:05,309 copying lobster/tools/providers/ncbi_query_builder.py -> build/lib/lobster/tools/providers 2026-01-07T18:09:05,311 copying lobster/tools/providers/pdb_provider.py -> build/lib/lobster/tools/providers 2026-01-07T18:09:05,314 creating build/lib/lobster/agents/archive 2026-01-07T18:09:05,315 copying lobster/agents/archive/research_agent_assistant.py -> build/lib/lobster/agents/archive 2026-01-07T18:09:05,318 creating build/lib/lobster/agents/langgraph_supervisor 2026-01-07T18:09:05,319 copying lobster/agents/langgraph_supervisor/supervisor.py -> build/lib/lobster/agents/langgraph_supervisor 2026-01-07T18:09:05,322 copying lobster/agents/langgraph_supervisor/__init__.py -> build/lib/lobster/agents/langgraph_supervisor 2026-01-07T18:09:05,324 copying lobster/agents/langgraph_supervisor/agent_name.py -> build/lib/lobster/agents/langgraph_supervisor 2026-01-07T18:09:05,326 copying lobster/agents/langgraph_supervisor/handoff.py -> build/lib/lobster/agents/langgraph_supervisor 2026-01-07T18:09:05,329 creating build/lib/lobster/agents/transcriptomics 2026-01-07T18:09:05,330 copying lobster/agents/transcriptomics/__init__.py -> build/lib/lobster/agents/transcriptomics 2026-01-07T18:09:05,332 copying lobster/agents/transcriptomics/transcriptomics_expert.py -> build/lib/lobster/agents/transcriptomics 2026-01-07T18:09:05,336 copying lobster/agents/transcriptomics/state.py -> build/lib/lobster/agents/transcriptomics 2026-01-07T18:09:05,338 copying lobster/agents/transcriptomics/shared_tools.py -> build/lib/lobster/agents/transcriptomics 2026-01-07T18:09:05,341 copying lobster/agents/transcriptomics/annotation_expert.py -> build/lib/lobster/agents/transcriptomics 2026-01-07T18:09:05,344 copying lobster/agents/transcriptomics/de_analysis_expert.py -> build/lib/lobster/agents/transcriptomics 2026-01-07T18:09:05,350 creating build/lib/lobster/agents/proteomics 2026-01-07T18:09:05,351 copying lobster/agents/proteomics/__init__.py -> build/lib/lobster/agents/proteomics 2026-01-07T18:09:05,353 copying lobster/agents/proteomics/state.py -> build/lib/lobster/agents/proteomics 2026-01-07T18:09:05,355 creating build/lib/lobster/services/templates 2026-01-07T18:09:05,356 copying lobster/services/templates/__init__.py -> build/lib/lobster/services/templates 2026-01-07T18:09:05,357 copying lobster/services/templates/annotation_templates.py -> build/lib/lobster/services/templates 2026-01-07T18:09:05,361 creating build/lib/lobster/services/execution 2026-01-07T18:09:05,362 copying lobster/services/execution/__init__.py -> build/lib/lobster/services/execution 2026-01-07T18:09:05,365 copying lobster/services/execution/execution_context_builder.py -> build/lib/lobster/services/execution 2026-01-07T18:09:05,368 copying lobster/services/execution/custom_code_execution_service.py -> build/lib/lobster/services/execution 2026-01-07T18:09:05,372 creating build/lib/lobster/services/metadata 2026-01-07T18:09:05,373 copying lobster/services/metadata/manual_annotation_service.py -> build/lib/lobster/services/metadata 2026-01-07T18:09:05,376 copying lobster/services/metadata/__init__.py -> build/lib/lobster/services/metadata 2026-01-07T18:09:05,378 copying lobster/services/metadata/identifier_provenance_service.py -> build/lib/lobster/services/metadata 2026-01-07T18:09:05,381 copying lobster/services/metadata/sample_grouping_service.py -> build/lib/lobster/services/metadata 2026-01-07T18:09:05,384 copying lobster/services/metadata/metadata_standardization_service.py -> build/lib/lobster/services/metadata 2026-01-07T18:09:05,387 copying lobster/services/metadata/metadata_validation_service.py -> build/lib/lobster/services/metadata 2026-01-07T18:09:05,390 creating build/lib/lobster/services/analysis 2026-01-07T18:09:05,391 copying lobster/services/analysis/scvi_embedding_service.py -> build/lib/lobster/services/analysis 2026-01-07T18:09:05,394 copying lobster/services/analysis/__init__.py -> build/lib/lobster/services/analysis 2026-01-07T18:09:05,396 copying lobster/services/analysis/enhanced_singlecell_service.py -> build/lib/lobster/services/analysis 2026-01-07T18:09:05,401 copying lobster/services/analysis/clustering_service.py -> build/lib/lobster/services/analysis 2026-01-07T18:09:05,406 copying lobster/services/analysis/structure_analysis_service.py -> build/lib/lobster/services/analysis 2026-01-07T18:09:05,409 copying lobster/services/analysis/differential_formula_service.py -> build/lib/lobster/services/analysis 2026-01-07T18:09:05,412 copying lobster/services/analysis/bulk_rnaseq_service.py -> build/lib/lobster/services/analysis 2026-01-07T18:09:05,417 copying lobster/services/analysis/pseudobulk_service.py -> build/lib/lobster/services/analysis 2026-01-07T18:09:05,420 creating build/lib/lobster/services/ml 2026-01-07T18:09:05,421 copying lobster/services/ml/__init__.py -> build/lib/lobster/services/ml 2026-01-07T18:09:05,423 creating build/lib/lobster/services/data_management 2026-01-07T18:09:05,424 copying lobster/services/data_management/__init__.py -> build/lib/lobster/services/data_management 2026-01-07T18:09:05,425 copying lobster/services/data_management/modality_management_service.py -> build/lib/lobster/services/data_management 2026-01-07T18:09:05,428 copying lobster/services/data_management/concatenation_service.py -> build/lib/lobster/services/data_management 2026-01-07T18:09:05,431 creating build/lib/lobster/services/quality 2026-01-07T18:09:05,432 copying lobster/services/quality/quality_service.py -> build/lib/lobster/services/quality 2026-01-07T18:09:05,435 copying lobster/services/quality/__init__.py -> build/lib/lobster/services/quality 2026-01-07T18:09:05,437 copying lobster/services/quality/preprocessing_service.py -> build/lib/lobster/services/quality 2026-01-07T18:09:05,441 creating build/lib/lobster/services/data_access 2026-01-07T18:09:05,442 copying lobster/services/data_access/pride_download_service.py -> build/lib/lobster/services/data_access 2026-01-07T18:09:05,445 copying lobster/services/data_access/__init__.py -> build/lib/lobster/services/data_access 2026-01-07T18:09:05,447 copying lobster/services/data_access/sra_download_service.py -> build/lib/lobster/services/data_access 2026-01-07T18:09:05,451 copying lobster/services/data_access/docling_service.py -> build/lib/lobster/services/data_access 2026-01-07T18:09:05,455 copying lobster/services/data_access/massive_download_service.py -> build/lib/lobster/services/data_access 2026-01-07T18:09:05,458 copying lobster/services/data_access/protein_structure_fetch_service.py -> build/lib/lobster/services/data_access 2026-01-07T18:09:05,461 copying lobster/services/data_access/workspace_content_service.py -> build/lib/lobster/services/data_access 2026-01-07T18:09:05,464 copying lobster/services/data_access/geo_download_service.py -> build/lib/lobster/services/data_access 2026-01-07T18:09:05,467 copying lobster/services/data_access/content_access_service.py -> build/lib/lobster/services/data_access 2026-01-07T18:09:05,471 copying lobster/services/data_access/geo_fallback_service.py -> build/lib/lobster/services/data_access 2026-01-07T18:09:05,474 copying lobster/services/data_access/geo_service.py -> build/lib/lobster/services/data_access 2026-01-07T18:09:05,483 creating build/lib/lobster/services/orchestration 2026-01-07T18:09:05,483 copying lobster/services/orchestration/__init__.py -> build/lib/lobster/services/orchestration 2026-01-07T18:09:05,485 copying lobster/services/orchestration/publication_processing_service.py -> build/lib/lobster/services/orchestration 2026-01-07T18:09:05,489 creating build/lib/lobster/services/visualization 2026-01-07T18:09:05,490 copying lobster/services/visualization/bulk_visualization_service.py -> build/lib/lobster/services/visualization 2026-01-07T18:09:05,495 copying lobster/services/visualization/pymol_visualization_service.py -> build/lib/lobster/services/visualization 2026-01-07T18:09:05,499 copying lobster/services/visualization/__init__.py -> build/lib/lobster/services/visualization 2026-01-07T18:09:05,501 copying lobster/services/visualization/visualization_service.py -> build/lib/lobster/services/visualization 2026-01-07T18:09:05,505 creating build/lib/lobster/services/metadata/protocol_extraction 2026-01-07T18:09:05,507 copying lobster/services/metadata/protocol_extraction/__init__.py -> build/lib/lobster/services/metadata/protocol_extraction 2026-01-07T18:09:05,510 copying lobster/services/metadata/protocol_extraction/base.py -> build/lib/lobster/services/metadata/protocol_extraction 2026-01-07T18:09:05,513 creating build/lib/lobster/services/metadata/protocol_extraction/mass_spec 2026-01-07T18:09:05,514 copying lobster/services/metadata/protocol_extraction/mass_spec/__init__.py -> build/lib/lobster/services/metadata/protocol_extraction/mass_spec 2026-01-07T18:09:05,517 copying lobster/services/metadata/protocol_extraction/mass_spec/details.py -> build/lib/lobster/services/metadata/protocol_extraction/mass_spec 2026-01-07T18:09:05,520 copying lobster/services/metadata/protocol_extraction/mass_spec/service.py -> build/lib/lobster/services/metadata/protocol_extraction/mass_spec 2026-01-07T18:09:05,523 creating build/lib/lobster/services/metadata/protocol_extraction/rnaseq 2026-01-07T18:09:05,525 copying lobster/services/metadata/protocol_extraction/rnaseq/__init__.py -> build/lib/lobster/services/metadata/protocol_extraction/rnaseq 2026-01-07T18:09:05,527 copying lobster/services/metadata/protocol_extraction/rnaseq/details.py -> build/lib/lobster/services/metadata/protocol_extraction/rnaseq 2026-01-07T18:09:05,529 copying lobster/services/metadata/protocol_extraction/rnaseq/service.py -> build/lib/lobster/services/metadata/protocol_extraction/rnaseq 2026-01-07T18:09:05,532 creating build/lib/lobster/services/metadata/protocol_extraction/amplicon 2026-01-07T18:09:05,533 copying lobster/services/metadata/protocol_extraction/amplicon/__init__.py -> build/lib/lobster/services/metadata/protocol_extraction/amplicon 2026-01-07T18:09:05,535 copying lobster/services/metadata/protocol_extraction/amplicon/details.py -> build/lib/lobster/services/metadata/protocol_extraction/amplicon 2026-01-07T18:09:05,538 copying lobster/services/metadata/protocol_extraction/amplicon/service.py -> build/lib/lobster/services/metadata/protocol_extraction/amplicon 2026-01-07T18:09:05,542 creating build/lib/lobster/services/data_access/geo 2026-01-07T18:09:05,543 copying lobster/services/data_access/geo/constants.py -> build/lib/lobster/services/data_access/geo 2026-01-07T18:09:05,546 copying lobster/services/data_access/geo/downloader.py -> build/lib/lobster/services/data_access/geo 2026-01-07T18:09:05,550 copying lobster/services/data_access/geo/__init__.py -> build/lib/lobster/services/data_access/geo 2026-01-07T18:09:05,553 copying lobster/services/data_access/geo/facade.py -> build/lib/lobster/services/data_access/geo 2026-01-07T18:09:05,555 copying lobster/services/data_access/geo/strategy.py -> build/lib/lobster/services/data_access/geo 2026-01-07T18:09:05,558 copying lobster/services/data_access/geo/parser.py -> build/lib/lobster/services/data_access/geo 2026-01-07T18:09:05,564 creating build/lib/lobster/services/data_access/geo/sample 2026-01-07T18:09:05,565 copying lobster/services/data_access/geo/sample/__init__.py -> build/lib/lobster/services/data_access/geo/sample 2026-01-07T18:09:05,569 creating build/lib/lobster/services/data_access/geo/metadata 2026-01-07T18:09:05,570 copying lobster/services/data_access/geo/metadata/__init__.py -> build/lib/lobster/services/data_access/geo/metadata 2026-01-07T18:09:05,573 creating build/lib/lobster/services/data_access/geo/loaders 2026-01-07T18:09:05,574 copying lobster/services/data_access/geo/loaders/__init__.py -> build/lib/lobster/services/data_access/geo/loaders 2026-01-07T18:09:05,576 copying lobster/services/data_access/geo/loaders/tenx.py -> build/lib/lobster/services/data_access/geo/loaders 2026-01-07T18:09:05,580 creating build/lib/lobster/services/data_access/geo/utils 2026-01-07T18:09:05,581 copying lobster/services/data_access/geo/utils/__init__.py -> build/lib/lobster/services/data_access/geo/utils 2026-01-07T18:09:05,584 running egg_info 2026-01-07T18:09:05,596 writing lobster_ai.egg-info/PKG-INFO 2026-01-07T18:09:05,628 writing dependency_links to lobster_ai.egg-info/dependency_links.txt 2026-01-07T18:09:05,630 writing entry points to lobster_ai.egg-info/entry_points.txt 2026-01-07T18:09:05,650 writing requirements to lobster_ai.egg-info/requires.txt 2026-01-07T18:09:05,652 writing top-level names to lobster_ai.egg-info/top_level.txt 2026-01-07T18:09:05,769 reading manifest file 'lobster_ai.egg-info/SOURCES.txt' 2026-01-07T18:09:05,786 adding license file 'LICENSE' 2026-01-07T18:09:05,800 writing manifest file 'lobster_ai.egg-info/SOURCES.txt' 2026-01-07T18:09:05,887 creating build/lib/lobster/services/metadata/protocol_extraction/amplicon/resources 2026-01-07T18:09:05,889 copying lobster/services/metadata/protocol_extraction/amplicon/resources/primers.json -> build/lib/lobster/services/metadata/protocol_extraction/amplicon/resources 2026-01-07T18:09:05,926 installing to build/bdist.linux-armv7l/wheel 2026-01-07T18:09:05,927 running install 2026-01-07T18:09:05,952 running install_lib 2026-01-07T18:09:05,958 creating build/bdist.linux-armv7l/wheel 2026-01-07T18:09:05,961 creating build/bdist.linux-armv7l/wheel/lobster 2026-01-07T18:09:05,962 creating build/bdist.linux-armv7l/wheel/lobster/cli_internal 2026-01-07T18:09:05,964 copying build/lib/lobster/cli_internal/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal 2026-01-07T18:09:05,967 creating build/bdist.linux-armv7l/wheel/lobster/cli_internal/commands 2026-01-07T18:09:05,968 copying build/lib/lobster/cli_internal/commands/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands 2026-01-07T18:09:05,971 creating build/bdist.linux-armv7l/wheel/lobster/cli_internal/commands/light 2026-01-07T18:09:05,973 copying build/lib/lobster/cli_internal/commands/light/pipeline_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light 2026-01-07T18:09:05,975 copying build/lib/lobster/cli_internal/commands/light/workspace_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light 2026-01-07T18:09:05,979 copying build/lib/lobster/cli_internal/commands/light/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light 2026-01-07T18:09:05,981 copying build/lib/lobster/cli_internal/commands/light/config_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light 2026-01-07T18:09:05,983 copying build/lib/lobster/cli_internal/commands/light/queue_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light 2026-01-07T18:09:05,986 copying build/lib/lobster/cli_internal/commands/light/file_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light 2026-01-07T18:09:05,989 copying build/lib/lobster/cli_internal/commands/light/metadata_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light 2026-01-07T18:09:05,992 copying build/lib/lobster/cli_internal/commands/output_adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands 2026-01-07T18:09:05,995 creating build/bdist.linux-armv7l/wheel/lobster/cli_internal/commands/heavy 2026-01-07T18:09:05,996 copying build/lib/lobster/cli_internal/commands/heavy/data_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/heavy 2026-01-07T18:09:05,999 copying build/lib/lobster/cli_internal/commands/heavy/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/heavy 2026-01-07T18:09:06,001 copying build/lib/lobster/cli_internal/commands/heavy/modality_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/heavy 2026-01-07T18:09:06,003 copying build/lib/lobster/cli_internal/commands/heavy/visualization_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/heavy 2026-01-07T18:09:06,007 creating build/bdist.linux-armv7l/wheel/lobster/cli_internal/utils 2026-01-07T18:09:06,008 copying build/lib/lobster/cli_internal/utils/path_resolution.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/utils 2026-01-07T18:09:06,011 copying build/lib/lobster/cli_internal/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/utils 2026-01-07T18:09:06,013 copying build/lib/lobster/version.py -> build/bdist.linux-armv7l/wheel/./lobster 2026-01-07T18:09:06,015 creating build/bdist.linux-armv7l/wheel/lobster/ui 2026-01-07T18:09:06,016 copying build/lib/lobster/ui/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui 2026-01-07T18:09:06,019 creating build/bdist.linux-armv7l/wheel/lobster/ui/components 2026-01-07T18:09:06,020 copying build/lib/lobster/ui/components/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/components 2026-01-07T18:09:06,023 copying build/lib/lobster/ui/components/parallel_workers_progress.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/components 2026-01-07T18:09:06,025 copying build/lib/lobster/ui/components/multi_progress.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/components 2026-01-07T18:09:06,028 copying build/lib/lobster/ui/components/file_tree.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/components 2026-01-07T18:09:06,031 copying build/lib/lobster/ui/components/status_display.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/components 2026-01-07T18:09:06,034 creating build/bdist.linux-armv7l/wheel/lobster/ui/formatters 2026-01-07T18:09:06,035 copying build/lib/lobster/ui/formatters/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/formatters 2026-01-07T18:09:06,038 copying build/lib/lobster/ui/progress_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/ui 2026-01-07T18:09:06,041 creating build/bdist.linux-armv7l/wheel/lobster/ui/widgets 2026-01-07T18:09:06,042 copying build/lib/lobster/ui/widgets/results_display.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-07T18:09:06,045 copying build/lib/lobster/ui/widgets/modality_list.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-07T18:09:06,047 copying build/lib/lobster/ui/widgets/queue_status_bar.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-07T18:09:06,049 copying build/lib/lobster/ui/widgets/data_hub.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-07T18:09:06,052 copying build/lib/lobster/ui/widgets/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-07T18:09:06,054 copying build/lib/lobster/ui/widgets/query_prompt.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-07T18:09:06,056 copying build/lib/lobster/ui/widgets/activity_log.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-07T18:09:06,059 copying build/lib/lobster/ui/widgets/adapters_panel.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-07T18:09:06,061 copying build/lib/lobster/ui/widgets/token_usage_panel.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-07T18:09:06,063 copying build/lib/lobster/ui/widgets/system_info.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-07T18:09:06,066 copying build/lib/lobster/ui/widgets/plot_preview.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-07T18:09:06,069 copying build/lib/lobster/ui/widgets/connections_panel.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-07T18:09:06,071 copying build/lib/lobster/ui/widgets/status_bar.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-07T18:09:06,074 copying build/lib/lobster/ui/widgets/chat_message.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-07T18:09:06,076 copying build/lib/lobster/ui/widgets/agents_panel.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-07T18:09:06,078 copying build/lib/lobster/ui/widgets/error_modal.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-07T18:09:06,081 copying build/lib/lobster/ui/widgets/queue_panel.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-07T18:09:06,083 copying build/lib/lobster/ui/commands.py -> build/bdist.linux-armv7l/wheel/./lobster/ui 2026-01-07T18:09:06,086 copying build/lib/lobster/ui/themes.py -> build/bdist.linux-armv7l/wheel/./lobster/ui 2026-01-07T18:09:06,088 copying build/lib/lobster/ui/os_app.py -> build/bdist.linux-armv7l/wheel/./lobster/ui 2026-01-07T18:09:06,091 creating build/bdist.linux-armv7l/wheel/lobster/ui/callbacks 2026-01-07T18:09:06,092 copying build/lib/lobster/ui/callbacks/textual_callback.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/callbacks 2026-01-07T18:09:06,095 copying build/lib/lobster/ui/callbacks/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/callbacks 2026-01-07T18:09:06,097 copying build/lib/lobster/ui/live_dashboard.py -> build/bdist.linux-armv7l/wheel/./lobster/ui 2026-01-07T18:09:06,101 creating build/bdist.linux-armv7l/wheel/lobster/ui/services 2026-01-07T18:09:06,102 copying build/lib/lobster/ui/services/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/services 2026-01-07T18:09:06,104 copying build/lib/lobster/ui/services/error_service.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/services 2026-01-07T18:09:06,107 copying build/lib/lobster/ui/console_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/ui 2026-01-07T18:09:06,110 creating build/bdist.linux-armv7l/wheel/lobster/ui/screens 2026-01-07T18:09:06,112 copying build/lib/lobster/ui/screens/analysis_screen.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/screens 2026-01-07T18:09:06,115 copying build/lib/lobster/ui/screens/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/screens 2026-01-07T18:09:06,117 copying build/lib/lobster/main.py -> build/bdist.linux-armv7l/wheel/./lobster 2026-01-07T18:09:06,119 copying build/lib/lobster/__main__.py -> build/bdist.linux-armv7l/wheel/./lobster 2026-01-07T18:09:06,121 copying build/lib/lobster/cli.py -> build/bdist.linux-armv7l/wheel/./lobster 2026-01-07T18:09:06,132 creating build/bdist.linux-armv7l/wheel/lobster/lobster_cloud 2026-01-07T18:09:06,133 copying build/lib/lobster/lobster_cloud/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/lobster_cloud 2026-01-07T18:09:06,135 copying build/lib/lobster/lobster_cloud/client.py -> build/bdist.linux-armv7l/wheel/./lobster/lobster_cloud 2026-01-07T18:09:06,139 creating build/bdist.linux-armv7l/wheel/lobster/core 2026-01-07T18:09:06,140 copying build/lib/lobster/core/plot_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-07T18:09:06,143 copying build/lib/lobster/core/notebook_exporter.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-07T18:09:06,147 copying build/lib/lobster/core/publication_queue.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-07T18:09:06,150 copying build/lib/lobster/core/provenance.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-07T18:09:06,153 copying build/lib/lobster/core/plugin_loader.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-07T18:09:06,156 copying build/lib/lobster/core/download_queue.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-07T18:09:06,159 copying build/lib/lobster/core/archive_utils.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-07T18:09:06,162 copying build/lib/lobster/core/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-07T18:09:06,164 creating build/bdist.linux-armv7l/wheel/lobster/core/interfaces 2026-01-07T18:09:06,166 copying build/lib/lobster/core/interfaces/backend.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces 2026-01-07T18:09:06,168 copying build/lib/lobster/core/interfaces/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces 2026-01-07T18:09:06,170 copying build/lib/lobster/core/interfaces/download_service.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces 2026-01-07T18:09:06,173 copying build/lib/lobster/core/interfaces/validator.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces 2026-01-07T18:09:06,176 copying build/lib/lobster/core/interfaces/base_client.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces 2026-01-07T18:09:06,178 copying build/lib/lobster/core/interfaces/adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces 2026-01-07T18:09:06,180 copying build/lib/lobster/core/ris_parser.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-07T18:09:06,183 copying build/lib/lobster/core/config_resolver.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-07T18:09:06,185 copying build/lib/lobster/core/ir_coverage.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-07T18:09:06,189 copying build/lib/lobster/core/notebook_validator.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-07T18:09:06,192 copying build/lib/lobster/core/queue_storage.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-07T18:09:06,193 copying build/lib/lobster/core/analysis_ir.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-07T18:09:06,197 copying build/lib/lobster/core/workspace.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-07T18:09:06,198 copying build/lib/lobster/core/notebook_executor.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-07T18:09:06,201 creating build/bdist.linux-armv7l/wheel/lobster/core/identifiers 2026-01-07T18:09:06,202 copying build/lib/lobster/core/identifiers/accession_resolver.py -> build/bdist.linux-armv7l/wheel/./lobster/core/identifiers 2026-01-07T18:09:06,205 copying build/lib/lobster/core/identifiers/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/identifiers 2026-01-07T18:09:06,207 copying build/lib/lobster/core/exceptions.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-07T18:09:06,209 creating build/bdist.linux-armv7l/wheel/lobster/core/utils 2026-01-07T18:09:06,210 copying build/lib/lobster/core/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/utils 2026-01-07T18:09:06,212 copying build/lib/lobster/core/utils/h5ad_utils.py -> build/bdist.linux-armv7l/wheel/./lobster/core/utils 2026-01-07T18:09:06,215 copying build/lib/lobster/core/client.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-07T18:09:06,218 copying build/lib/lobster/core/data_manager_v2.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-07T18:09:06,223 creating build/bdist.linux-armv7l/wheel/lobster/core/backends 2026-01-07T18:09:06,224 copying build/lib/lobster/core/backends/mudata_backend.py -> build/bdist.linux-armv7l/wheel/./lobster/core/backends 2026-01-07T18:09:06,227 copying build/lib/lobster/core/backends/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/backends 2026-01-07T18:09:06,229 copying build/lib/lobster/core/backends/h5ad_backend.py -> build/bdist.linux-armv7l/wheel/./lobster/core/backends 2026-01-07T18:09:06,233 copying build/lib/lobster/core/backends/base.py -> build/bdist.linux-armv7l/wheel/./lobster/core/backends 2026-01-07T18:09:06,236 creating build/bdist.linux-armv7l/wheel/lobster/core/schemas 2026-01-07T18:09:06,237 copying build/lib/lobster/core/schemas/metagenomics.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-07T18:09:06,241 copying build/lib/lobster/core/schemas/proteomics.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-07T18:09:06,244 copying build/lib/lobster/core/schemas/publication_queue.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-07T18:09:06,246 copying build/lib/lobster/core/schemas/export_schemas.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-07T18:09:06,249 copying build/lib/lobster/core/schemas/download_queue.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-07T18:09:06,251 copying build/lib/lobster/core/schemas/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-07T18:09:06,253 copying build/lib/lobster/core/schemas/transcriptomics.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-07T18:09:06,256 copying build/lib/lobster/core/schemas/metabolomics.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-07T18:09:06,258 copying build/lib/lobster/core/schemas/validation.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-07T18:09:06,261 copying build/lib/lobster/core/schemas/database_mappings.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-07T18:09:06,263 copying build/lib/lobster/core/schemas/database_registry.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-07T18:09:06,265 copying build/lib/lobster/core/schemas/sra.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-07T18:09:06,268 copying build/lib/lobster/core/schemas/protein_structure.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-07T18:09:06,271 copying build/lib/lobster/core/schemas/download_urls.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-07T18:09:06,273 copying build/lib/lobster/core/component_registry.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-07T18:09:06,276 creating build/bdist.linux-armv7l/wheel/lobster/core/adapters 2026-01-07T18:09:06,277 copying build/lib/lobster/core/adapters/protein_structure_adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters 2026-01-07T18:09:06,280 copying build/lib/lobster/core/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters 2026-01-07T18:09:06,282 copying build/lib/lobster/core/adapters/proteomics_adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters 2026-01-07T18:09:06,284 copying build/lib/lobster/core/adapters/transcriptomics_adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters 2026-01-07T18:09:06,287 copying build/lib/lobster/core/adapters/base.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters 2026-01-07T18:09:06,289 copying build/lib/lobster/core/adapters/pseudobulk_adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters 2026-01-07T18:09:06,292 copying build/lib/lobster/core/license_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-07T18:09:06,295 copying build/lib/lobster/_version.py -> build/bdist.linux-armv7l/wheel/./lobster 2026-01-07T18:09:06,297 creating build/bdist.linux-armv7l/wheel/lobster/utils 2026-01-07T18:09:06,298 copying build/lib/lobster/utils/file_analyzer.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-07T18:09:06,301 copying build/lib/lobster/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-07T18:09:06,303 copying build/lib/lobster/utils/progress_wrapper.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-07T18:09:06,305 copying build/lib/lobster/utils/ssl_utils.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-07T18:09:06,307 copying build/lib/lobster/utils/deviance.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-07T18:09:06,309 copying build/lib/lobster/utils/error_handlers.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-07T18:09:06,311 copying build/lib/lobster/utils/system.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-07T18:09:06,313 copying build/lib/lobster/utils/logger.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-07T18:09:06,315 copying build/lib/lobster/utils/callbacks.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-07T18:09:06,318 copying build/lib/lobster/utils/json_extractor.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-07T18:09:06,320 copying build/lib/lobster/utils/file_naming.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-07T18:09:06,323 creating build/bdist.linux-armv7l/wheel/lobster/config 2026-01-07T18:09:06,324 copying build/lib/lobster/config/llm_factory.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-07T18:09:06,326 copying build/lib/lobster/config/supervisor_config.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-07T18:09:06,328 copying build/lib/lobster/config/constants.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-07T18:09:06,330 copying build/lib/lobster/config/config_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-07T18:09:06,332 copying build/lib/lobster/config/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-07T18:09:06,334 copying build/lib/lobster/config/workspace_config.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-07T18:09:06,336 copying build/lib/lobster/config/provider_setup.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-07T18:09:06,338 copying build/lib/lobster/config/base_config.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-07T18:09:06,340 copying build/lib/lobster/config/agent_registry.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-07T18:09:06,343 copying build/lib/lobster/config/global_config.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-07T18:09:06,345 copying build/lib/lobster/config/model_service.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-07T18:09:06,347 copying build/lib/lobster/config/agent_config.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-07T18:09:06,350 copying build/lib/lobster/config/ollama_service.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-07T18:09:06,352 copying build/lib/lobster/config/agent_capabilities.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-07T18:09:06,355 creating build/bdist.linux-armv7l/wheel/lobster/config/providers 2026-01-07T18:09:06,356 copying build/lib/lobster/config/providers/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers 2026-01-07T18:09:06,358 copying build/lib/lobster/config/providers/base_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers 2026-01-07T18:09:06,360 copying build/lib/lobster/config/providers/gemini_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers 2026-01-07T18:09:06,363 copying build/lib/lobster/config/providers/bedrock_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers 2026-01-07T18:09:06,365 copying build/lib/lobster/config/providers/anthropic_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers 2026-01-07T18:09:06,368 copying build/lib/lobster/config/providers/ollama_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers 2026-01-07T18:09:06,371 copying build/lib/lobster/config/providers/registry.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers 2026-01-07T18:09:06,373 copying build/lib/lobster/config/subscription_tiers.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-07T18:09:06,376 copying build/lib/lobster/config/settings.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-07T18:09:06,379 creating build/bdist.linux-armv7l/wheel/lobster/tools 2026-01-07T18:09:06,381 creating build/bdist.linux-armv7l/wheel/lobster/tools/archive 2026-01-07T18:09:06,383 copying build/lib/lobster/tools/archive/publication_service.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/archive 2026-01-07T18:09:06,386 copying build/lib/lobster/tools/archive/unified_content_service.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/archive 2026-01-07T18:09:06,389 copying build/lib/lobster/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-07T18:09:06,391 copying build/lib/lobster/tools/expert_handoff_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-07T18:09:06,394 copying build/lib/lobster/tools/geo_parser.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-07T18:09:06,396 copying build/lib/lobster/tools/enhanced_handoff_tool.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-07T18:09:06,399 copying build/lib/lobster/tools/url_transforms.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-07T18:09:06,401 copying build/lib/lobster/tools/workspace_tool.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-07T18:09:06,407 copying build/lib/lobster/tools/gpu_detector.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-07T18:09:06,409 copying build/lib/lobster/tools/workflow_tracker.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-07T18:09:06,412 copying build/lib/lobster/tools/handoff_tool.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-07T18:09:06,415 copying build/lib/lobster/tools/download_orchestrator.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-07T18:09:06,417 copying build/lib/lobster/tools/todo_tools.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-07T18:09:06,420 copying build/lib/lobster/tools/custom_code_tool.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-07T18:09:06,423 copying build/lib/lobster/tools/expert_handoff_patterns.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-07T18:09:06,425 copying build/lib/lobster/tools/geo_downloader.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-07T18:09:06,427 copying build/lib/lobster/tools/rate_limiter.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-07T18:09:06,431 creating build/bdist.linux-armv7l/wheel/lobster/tools/providers 2026-01-07T18:09:06,433 copying build/lib/lobster/tools/providers/pride_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-07T18:09:06,436 copying build/lib/lobster/tools/providers/geo_utils.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-07T18:09:06,438 copying build/lib/lobster/tools/providers/pubmed_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-07T18:09:06,444 copying build/lib/lobster/tools/providers/biopython_entrez_wrapper.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-07T18:09:06,447 copying build/lib/lobster/tools/providers/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-07T18:09:06,449 copying build/lib/lobster/tools/providers/pmc_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-07T18:09:06,455 copying build/lib/lobster/tools/providers/base_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-07T18:09:06,458 copying build/lib/lobster/tools/providers/provider_registry.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-07T18:09:06,460 copying build/lib/lobster/tools/providers/structure_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-07T18:09:06,463 copying build/lib/lobster/tools/providers/webpage_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-07T18:09:06,466 copying build/lib/lobster/tools/providers/sra_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-07T18:09:06,471 copying build/lib/lobster/tools/providers/pride_normalizer.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-07T18:09:06,474 copying build/lib/lobster/tools/providers/organism_enum.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-07T18:09:06,476 copying build/lib/lobster/tools/providers/massive_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-07T18:09:06,479 copying build/lib/lobster/tools/providers/biorxiv_medrxiv_config.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-07T18:09:06,482 copying build/lib/lobster/tools/providers/publication_resolver.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-07T18:09:06,485 copying build/lib/lobster/tools/providers/geo_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-07T18:09:06,488 copying build/lib/lobster/tools/providers/biorxiv_medrxiv_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-07T18:09:06,492 copying build/lib/lobster/tools/providers/abstract_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-07T18:09:06,495 copying build/lib/lobster/tools/providers/ncbi_query_builder.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-07T18:09:06,498 copying build/lib/lobster/tools/providers/pdb_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-07T18:09:06,501 copying build/lib/lobster/tools/pipeline_strategy.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-07T18:09:06,504 creating build/bdist.linux-armv7l/wheel/lobster/agents 2026-01-07T18:09:06,505 copying build/lib/lobster/agents/supervisor.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-07T18:09:06,509 copying build/lib/lobster/agents/visualization_expert.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-07T18:09:06,513 creating build/bdist.linux-armv7l/wheel/lobster/agents/archive 2026-01-07T18:09:06,514 copying build/lib/lobster/agents/archive/research_agent_assistant.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/archive 2026-01-07T18:09:06,517 copying build/lib/lobster/agents/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-07T18:09:06,519 copying build/lib/lobster/agents/draw_graph.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-07T18:09:06,521 copying build/lib/lobster/agents/data_expert.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-07T18:09:06,525 copying build/lib/lobster/agents/research_agent.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-07T18:09:06,533 creating build/bdist.linux-armv7l/wheel/lobster/agents/langgraph_supervisor 2026-01-07T18:09:06,535 copying build/lib/lobster/agents/langgraph_supervisor/supervisor.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/langgraph_supervisor 2026-01-07T18:09:06,538 copying build/lib/lobster/agents/langgraph_supervisor/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/langgraph_supervisor 2026-01-07T18:09:06,540 copying build/lib/lobster/agents/langgraph_supervisor/agent_name.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/langgraph_supervisor 2026-01-07T18:09:06,543 copying build/lib/lobster/agents/langgraph_supervisor/handoff.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/langgraph_supervisor 2026-01-07T18:09:06,545 copying build/lib/lobster/agents/data_expert_assistant.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-07T18:09:06,550 creating build/bdist.linux-armv7l/wheel/lobster/agents/transcriptomics 2026-01-07T18:09:06,551 copying build/lib/lobster/agents/transcriptomics/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics 2026-01-07T18:09:06,553 copying build/lib/lobster/agents/transcriptomics/transcriptomics_expert.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics 2026-01-07T18:09:06,556 copying build/lib/lobster/agents/transcriptomics/state.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics 2026-01-07T18:09:06,558 copying build/lib/lobster/agents/transcriptomics/shared_tools.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics 2026-01-07T18:09:06,560 copying build/lib/lobster/agents/transcriptomics/annotation_expert.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics 2026-01-07T18:09:06,563 copying build/lib/lobster/agents/transcriptomics/de_analysis_expert.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics 2026-01-07T18:09:06,566 copying build/lib/lobster/agents/state.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-07T18:09:06,568 copying build/lib/lobster/agents/graph.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-07T18:09:06,571 creating build/bdist.linux-armv7l/wheel/lobster/agents/proteomics 2026-01-07T18:09:06,572 copying build/lib/lobster/agents/proteomics/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/proteomics 2026-01-07T18:09:06,574 copying build/lib/lobster/agents/proteomics/state.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/proteomics 2026-01-07T18:09:06,576 creating build/bdist.linux-armv7l/wheel/lobster/services 2026-01-07T18:09:06,578 creating build/bdist.linux-armv7l/wheel/lobster/services/templates 2026-01-07T18:09:06,579 copying build/lib/lobster/services/templates/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/templates 2026-01-07T18:09:06,580 copying build/lib/lobster/services/templates/annotation_templates.py -> build/bdist.linux-armv7l/wheel/./lobster/services/templates 2026-01-07T18:09:06,583 copying build/lib/lobster/services/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services 2026-01-07T18:09:06,585 creating build/bdist.linux-armv7l/wheel/lobster/services/execution 2026-01-07T18:09:06,586 copying build/lib/lobster/services/execution/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/execution 2026-01-07T18:09:06,588 copying build/lib/lobster/services/execution/execution_context_builder.py -> build/bdist.linux-armv7l/wheel/./lobster/services/execution 2026-01-07T18:09:06,590 copying build/lib/lobster/services/execution/custom_code_execution_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/execution 2026-01-07T18:09:06,594 creating build/bdist.linux-armv7l/wheel/lobster/services/metadata 2026-01-07T18:09:06,595 copying build/lib/lobster/services/metadata/manual_annotation_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata 2026-01-07T18:09:06,598 copying build/lib/lobster/services/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata 2026-01-07T18:09:06,600 copying build/lib/lobster/services/metadata/identifier_provenance_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata 2026-01-07T18:09:06,602 copying build/lib/lobster/services/metadata/sample_grouping_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata 2026-01-07T18:09:06,605 creating build/bdist.linux-armv7l/wheel/lobster/services/metadata/protocol_extraction 2026-01-07T18:09:06,606 copying build/lib/lobster/services/metadata/protocol_extraction/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction 2026-01-07T18:09:06,609 creating build/bdist.linux-armv7l/wheel/lobster/services/metadata/protocol_extraction/mass_spec 2026-01-07T18:09:06,610 copying build/lib/lobster/services/metadata/protocol_extraction/mass_spec/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/mass_spec 2026-01-07T18:09:06,612 copying build/lib/lobster/services/metadata/protocol_extraction/mass_spec/details.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/mass_spec 2026-01-07T18:09:06,614 copying build/lib/lobster/services/metadata/protocol_extraction/mass_spec/service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/mass_spec 2026-01-07T18:09:06,616 copying build/lib/lobster/services/metadata/protocol_extraction/base.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction 2026-01-07T18:09:06,618 creating build/bdist.linux-armv7l/wheel/lobster/services/metadata/protocol_extraction/rnaseq 2026-01-07T18:09:06,619 copying build/lib/lobster/services/metadata/protocol_extraction/rnaseq/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/rnaseq 2026-01-07T18:09:06,621 copying build/lib/lobster/services/metadata/protocol_extraction/rnaseq/details.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/rnaseq 2026-01-07T18:09:06,623 copying build/lib/lobster/services/metadata/protocol_extraction/rnaseq/service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/rnaseq 2026-01-07T18:09:06,625 creating build/bdist.linux-armv7l/wheel/lobster/services/metadata/protocol_extraction/amplicon 2026-01-07T18:09:06,626 copying build/lib/lobster/services/metadata/protocol_extraction/amplicon/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/amplicon 2026-01-07T18:09:06,628 copying build/lib/lobster/services/metadata/protocol_extraction/amplicon/details.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/amplicon 2026-01-07T18:09:06,630 creating build/bdist.linux-armv7l/wheel/lobster/services/metadata/protocol_extraction/amplicon/resources 2026-01-07T18:09:06,631 copying build/lib/lobster/services/metadata/protocol_extraction/amplicon/resources/primers.json -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/amplicon/resources 2026-01-07T18:09:06,634 copying build/lib/lobster/services/metadata/protocol_extraction/amplicon/service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/amplicon 2026-01-07T18:09:06,636 copying build/lib/lobster/services/metadata/metadata_standardization_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata 2026-01-07T18:09:06,639 copying build/lib/lobster/services/metadata/metadata_validation_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata 2026-01-07T18:09:06,643 creating build/bdist.linux-armv7l/wheel/lobster/services/analysis 2026-01-07T18:09:06,644 copying build/lib/lobster/services/analysis/scvi_embedding_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-07T18:09:06,647 copying build/lib/lobster/services/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-07T18:09:06,648 copying build/lib/lobster/services/analysis/enhanced_singlecell_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-07T18:09:06,652 copying build/lib/lobster/services/analysis/clustering_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-07T18:09:06,657 copying build/lib/lobster/services/analysis/structure_analysis_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-07T18:09:06,660 copying build/lib/lobster/services/analysis/differential_formula_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-07T18:09:06,663 copying build/lib/lobster/services/analysis/bulk_rnaseq_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-07T18:09:06,666 copying build/lib/lobster/services/analysis/pseudobulk_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-07T18:09:06,670 creating build/bdist.linux-armv7l/wheel/lobster/services/ml 2026-01-07T18:09:06,671 copying build/lib/lobster/services/ml/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/ml 2026-01-07T18:09:06,673 creating build/bdist.linux-armv7l/wheel/lobster/services/data_management 2026-01-07T18:09:06,674 copying build/lib/lobster/services/data_management/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_management 2026-01-07T18:09:06,676 copying build/lib/lobster/services/data_management/modality_management_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_management 2026-01-07T18:09:06,678 copying build/lib/lobster/services/data_management/concatenation_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_management 2026-01-07T18:09:06,682 creating build/bdist.linux-armv7l/wheel/lobster/services/quality 2026-01-07T18:09:06,684 copying build/lib/lobster/services/quality/quality_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/quality 2026-01-07T18:09:06,688 copying build/lib/lobster/services/quality/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/quality 2026-01-07T18:09:06,690 copying build/lib/lobster/services/quality/preprocessing_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/quality 2026-01-07T18:09:06,695 creating build/bdist.linux-armv7l/wheel/lobster/services/data_access 2026-01-07T18:09:06,696 copying build/lib/lobster/services/data_access/pride_download_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-07T18:09:06,700 copying build/lib/lobster/services/data_access/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-07T18:09:06,702 copying build/lib/lobster/services/data_access/sra_download_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-07T18:09:06,708 copying build/lib/lobster/services/data_access/docling_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-07T18:09:06,713 copying build/lib/lobster/services/data_access/massive_download_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-07T18:09:06,716 copying build/lib/lobster/services/data_access/protein_structure_fetch_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-07T18:09:06,719 copying build/lib/lobster/services/data_access/workspace_content_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-07T18:09:06,723 creating build/bdist.linux-armv7l/wheel/lobster/services/data_access/geo 2026-01-07T18:09:06,725 copying build/lib/lobster/services/data_access/geo/constants.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo 2026-01-07T18:09:06,727 copying build/lib/lobster/services/data_access/geo/downloader.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo 2026-01-07T18:09:06,732 copying build/lib/lobster/services/data_access/geo/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo 2026-01-07T18:09:06,734 copying build/lib/lobster/services/data_access/geo/facade.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo 2026-01-07T18:09:06,736 copying build/lib/lobster/services/data_access/geo/strategy.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo 2026-01-07T18:09:06,739 creating build/bdist.linux-armv7l/wheel/lobster/services/data_access/geo/sample 2026-01-07T18:09:06,741 copying build/lib/lobster/services/data_access/geo/sample/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo/sample 2026-01-07T18:09:06,743 creating build/bdist.linux-armv7l/wheel/lobster/services/data_access/geo/metadata 2026-01-07T18:09:06,745 copying build/lib/lobster/services/data_access/geo/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo/metadata 2026-01-07T18:09:06,748 creating build/bdist.linux-armv7l/wheel/lobster/services/data_access/geo/loaders 2026-01-07T18:09:06,749 copying build/lib/lobster/services/data_access/geo/loaders/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo/loaders 2026-01-07T18:09:06,751 copying build/lib/lobster/services/data_access/geo/loaders/tenx.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo/loaders 2026-01-07T18:09:06,755 creating build/bdist.linux-armv7l/wheel/lobster/services/data_access/geo/utils 2026-01-07T18:09:06,756 copying build/lib/lobster/services/data_access/geo/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo/utils 2026-01-07T18:09:06,759 copying build/lib/lobster/services/data_access/geo/parser.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo 2026-01-07T18:09:06,766 copying build/lib/lobster/services/data_access/geo_download_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-07T18:09:06,769 copying build/lib/lobster/services/data_access/content_access_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-07T18:09:06,773 copying build/lib/lobster/services/data_access/geo_fallback_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-07T18:09:06,776 copying build/lib/lobster/services/data_access/geo_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-07T18:09:06,794 creating build/bdist.linux-armv7l/wheel/lobster/services/orchestration 2026-01-07T18:09:06,795 copying build/lib/lobster/services/orchestration/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/orchestration 2026-01-07T18:09:06,797 copying build/lib/lobster/services/orchestration/publication_processing_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/orchestration 2026-01-07T18:09:06,801 creating build/bdist.linux-armv7l/wheel/lobster/services/visualization 2026-01-07T18:09:06,802 copying build/lib/lobster/services/visualization/bulk_visualization_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/visualization 2026-01-07T18:09:06,805 copying build/lib/lobster/services/visualization/pymol_visualization_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/visualization 2026-01-07T18:09:06,807 copying build/lib/lobster/services/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/visualization 2026-01-07T18:09:06,809 copying build/lib/lobster/services/visualization/visualization_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/visualization 2026-01-07T18:09:06,812 running install_egg_info 2026-01-07T18:09:06,818 Copying lobster_ai.egg-info to build/bdist.linux-armv7l/wheel/./lobster_ai-0.4.1.2-py3.11.egg-info 2026-01-07T18:09:06,830 running install_scripts 2026-01-07T18:09:06,843 creating build/bdist.linux-armv7l/wheel/lobster_ai-0.4.1.2.dist-info/WHEEL 2026-01-07T18:09:06,846 creating '/tmp/pip-wheel-245gcmt0/.tmp-vxg_1xl3/lobster_ai-0.4.1.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-01-07T18:09:06,848 adding 'lobster/__main__.py' 2026-01-07T18:09:06,850 adding 'lobster/_version.py' 2026-01-07T18:09:06,877 adding 'lobster/cli.py' 2026-01-07T18:09:06,880 adding 'lobster/main.py' 2026-01-07T18:09:06,881 adding 'lobster/version.py' 2026-01-07T18:09:06,883 adding 'lobster/agents/__init__.py' 2026-01-07T18:09:06,890 adding 'lobster/agents/data_expert.py' 2026-01-07T18:09:06,894 adding 'lobster/agents/data_expert_assistant.py' 2026-01-07T18:09:06,896 adding 'lobster/agents/draw_graph.py' 2026-01-07T18:09:06,898 adding 'lobster/agents/graph.py' 2026-01-07T18:09:06,912 adding 'lobster/agents/research_agent.py' 2026-01-07T18:09:06,915 adding 'lobster/agents/state.py' 2026-01-07T18:09:06,920 adding 'lobster/agents/supervisor.py' 2026-01-07T18:09:06,923 adding 'lobster/agents/visualization_expert.py' 2026-01-07T18:09:06,926 adding 'lobster/agents/archive/research_agent_assistant.py' 2026-01-07T18:09:06,928 adding 'lobster/agents/langgraph_supervisor/__init__.py' 2026-01-07T18:09:06,929 adding 'lobster/agents/langgraph_supervisor/agent_name.py' 2026-01-07T18:09:06,931 adding 'lobster/agents/langgraph_supervisor/handoff.py' 2026-01-07T18:09:06,934 adding 'lobster/agents/langgraph_supervisor/supervisor.py' 2026-01-07T18:09:06,936 adding 'lobster/agents/proteomics/__init__.py' 2026-01-07T18:09:06,937 adding 'lobster/agents/proteomics/state.py' 2026-01-07T18:09:06,939 adding 'lobster/agents/transcriptomics/__init__.py' 2026-01-07T18:09:06,943 adding 'lobster/agents/transcriptomics/annotation_expert.py' 2026-01-07T18:09:06,952 adding 'lobster/agents/transcriptomics/de_analysis_expert.py' 2026-01-07T18:09:06,955 adding 'lobster/agents/transcriptomics/shared_tools.py' 2026-01-07T18:09:06,957 adding 'lobster/agents/transcriptomics/state.py' 2026-01-07T18:09:06,962 adding 'lobster/agents/transcriptomics/transcriptomics_expert.py' 2026-01-07T18:09:06,964 adding 'lobster/cli_internal/__init__.py' 2026-01-07T18:09:06,966 adding 'lobster/cli_internal/commands/__init__.py' 2026-01-07T18:09:06,968 adding 'lobster/cli_internal/commands/output_adapter.py' 2026-01-07T18:09:06,969 adding 'lobster/cli_internal/commands/heavy/__init__.py' 2026-01-07T18:09:06,971 adding 'lobster/cli_internal/commands/heavy/data_commands.py' 2026-01-07T18:09:06,973 adding 'lobster/cli_internal/commands/heavy/modality_commands.py' 2026-01-07T18:09:06,975 adding 'lobster/cli_internal/commands/heavy/visualization_commands.py' 2026-01-07T18:09:06,977 adding 'lobster/cli_internal/commands/light/__init__.py' 2026-01-07T18:09:06,979 adding 'lobster/cli_internal/commands/light/config_commands.py' 2026-01-07T18:09:06,982 adding 'lobster/cli_internal/commands/light/file_commands.py' 2026-01-07T18:09:06,984 adding 'lobster/cli_internal/commands/light/metadata_commands.py' 2026-01-07T18:09:06,986 adding 'lobster/cli_internal/commands/light/pipeline_commands.py' 2026-01-07T18:09:06,989 adding 'lobster/cli_internal/commands/light/queue_commands.py' 2026-01-07T18:09:06,992 adding 'lobster/cli_internal/commands/light/workspace_commands.py' 2026-01-07T18:09:06,994 adding 'lobster/cli_internal/utils/__init__.py' 2026-01-07T18:09:06,996 adding 'lobster/cli_internal/utils/path_resolution.py' 2026-01-07T18:09:06,998 adding 'lobster/config/__init__.py' 2026-01-07T18:09:07,000 adding 'lobster/config/agent_capabilities.py' 2026-01-07T18:09:07,002 adding 'lobster/config/agent_config.py' 2026-01-07T18:09:07,004 adding 'lobster/config/agent_registry.py' 2026-01-07T18:09:07,006 adding 'lobster/config/base_config.py' 2026-01-07T18:09:07,008 adding 'lobster/config/config_manager.py' 2026-01-07T18:09:07,010 adding 'lobster/config/constants.py' 2026-01-07T18:09:07,012 adding 'lobster/config/global_config.py' 2026-01-07T18:09:07,014 adding 'lobster/config/llm_factory.py' 2026-01-07T18:09:07,015 adding 'lobster/config/model_service.py' 2026-01-07T18:09:07,018 adding 'lobster/config/ollama_service.py' 2026-01-07T18:09:07,020 adding 'lobster/config/provider_setup.py' 2026-01-07T18:09:07,022 adding 'lobster/config/settings.py' 2026-01-07T18:09:07,025 adding 'lobster/config/subscription_tiers.py' 2026-01-07T18:09:07,027 adding 'lobster/config/supervisor_config.py' 2026-01-07T18:09:07,029 adding 'lobster/config/workspace_config.py' 2026-01-07T18:09:07,031 adding 'lobster/config/providers/__init__.py' 2026-01-07T18:09:07,033 adding 'lobster/config/providers/anthropic_provider.py' 2026-01-07T18:09:07,035 adding 'lobster/config/providers/base_provider.py' 2026-01-07T18:09:07,038 adding 'lobster/config/providers/bedrock_provider.py' 2026-01-07T18:09:07,040 adding 'lobster/config/providers/gemini_provider.py' 2026-01-07T18:09:07,043 adding 'lobster/config/providers/ollama_provider.py' 2026-01-07T18:09:07,045 adding 'lobster/config/providers/registry.py' 2026-01-07T18:09:07,048 adding 'lobster/core/__init__.py' 2026-01-07T18:09:07,051 adding 'lobster/core/analysis_ir.py' 2026-01-07T18:09:07,054 adding 'lobster/core/archive_utils.py' 2026-01-07T18:09:07,064 adding 'lobster/core/client.py' 2026-01-07T18:09:07,067 adding 'lobster/core/component_registry.py' 2026-01-07T18:09:07,069 adding 'lobster/core/config_resolver.py' 2026-01-07T18:09:07,082 adding 'lobster/core/data_manager_v2.py' 2026-01-07T18:09:07,086 adding 'lobster/core/download_queue.py' 2026-01-07T18:09:07,088 adding 'lobster/core/exceptions.py' 2026-01-07T18:09:07,091 adding 'lobster/core/ir_coverage.py' 2026-01-07T18:09:07,094 adding 'lobster/core/license_manager.py' 2026-01-07T18:09:07,097 adding 'lobster/core/notebook_executor.py' 2026-01-07T18:09:07,101 adding 'lobster/core/notebook_exporter.py' 2026-01-07T18:09:07,104 adding 'lobster/core/notebook_validator.py' 2026-01-07T18:09:07,107 adding 'lobster/core/plot_manager.py' 2026-01-07T18:09:07,109 adding 'lobster/core/plugin_loader.py' 2026-01-07T18:09:07,112 adding 'lobster/core/provenance.py' 2026-01-07T18:09:07,115 adding 'lobster/core/publication_queue.py' 2026-01-07T18:09:07,117 adding 'lobster/core/queue_storage.py' 2026-01-07T18:09:07,120 adding 'lobster/core/ris_parser.py' 2026-01-07T18:09:07,121 adding 'lobster/core/workspace.py' 2026-01-07T18:09:07,123 adding 'lobster/core/adapters/__init__.py' 2026-01-07T18:09:07,125 adding 'lobster/core/adapters/base.py' 2026-01-07T18:09:07,128 adding 'lobster/core/adapters/protein_structure_adapter.py' 2026-01-07T18:09:07,131 adding 'lobster/core/adapters/proteomics_adapter.py' 2026-01-07T18:09:07,134 adding 'lobster/core/adapters/pseudobulk_adapter.py' 2026-01-07T18:09:07,137 adding 'lobster/core/adapters/transcriptomics_adapter.py' 2026-01-07T18:09:07,139 adding 'lobster/core/backends/__init__.py' 2026-01-07T18:09:07,141 adding 'lobster/core/backends/base.py' 2026-01-07T18:09:07,145 adding 'lobster/core/backends/h5ad_backend.py' 2026-01-07T18:09:07,147 adding 'lobster/core/backends/mudata_backend.py' 2026-01-07T18:09:07,149 adding 'lobster/core/identifiers/__init__.py' 2026-01-07T18:09:07,151 adding 'lobster/core/identifiers/accession_resolver.py' 2026-01-07T18:09:07,153 adding 'lobster/core/interfaces/__init__.py' 2026-01-07T18:09:07,155 adding 'lobster/core/interfaces/adapter.py' 2026-01-07T18:09:07,156 adding 'lobster/core/interfaces/backend.py' 2026-01-07T18:09:07,158 adding 'lobster/core/interfaces/base_client.py' 2026-01-07T18:09:07,160 adding 'lobster/core/interfaces/download_service.py' 2026-01-07T18:09:07,162 adding 'lobster/core/interfaces/validator.py' 2026-01-07T18:09:07,164 adding 'lobster/core/schemas/__init__.py' 2026-01-07T18:09:07,167 adding 'lobster/core/schemas/database_mappings.py' 2026-01-07T18:09:07,169 adding 'lobster/core/schemas/database_registry.py' 2026-01-07T18:09:07,171 adding 'lobster/core/schemas/download_queue.py' 2026-01-07T18:09:07,173 adding 'lobster/core/schemas/download_urls.py' 2026-01-07T18:09:07,178 adding 'lobster/core/schemas/export_schemas.py' 2026-01-07T18:09:07,182 adding 'lobster/core/schemas/metabolomics.py' 2026-01-07T18:09:07,188 adding 'lobster/core/schemas/metagenomics.py' 2026-01-07T18:09:07,191 adding 'lobster/core/schemas/protein_structure.py' 2026-01-07T18:09:07,195 adding 'lobster/core/schemas/proteomics.py' 2026-01-07T18:09:07,197 adding 'lobster/core/schemas/publication_queue.py' 2026-01-07T18:09:07,202 adding 'lobster/core/schemas/sra.py' 2026-01-07T18:09:07,209 adding 'lobster/core/schemas/transcriptomics.py' 2026-01-07T18:09:07,211 adding 'lobster/core/schemas/validation.py' 2026-01-07T18:09:07,213 adding 'lobster/core/utils/__init__.py' 2026-01-07T18:09:07,215 adding 'lobster/core/utils/h5ad_utils.py' 2026-01-07T18:09:07,217 adding 'lobster/lobster_cloud/__init__.py' 2026-01-07T18:09:07,219 adding 'lobster/lobster_cloud/client.py' 2026-01-07T18:09:07,221 adding 'lobster/services/__init__.py' 2026-01-07T18:09:07,222 adding 'lobster/services/analysis/__init__.py' 2026-01-07T18:09:07,230 adding 'lobster/services/analysis/bulk_rnaseq_service.py' 2026-01-07T18:09:07,240 adding 'lobster/services/analysis/clustering_service.py' 2026-01-07T18:09:07,244 adding 'lobster/services/analysis/differential_formula_service.py' 2026-01-07T18:09:07,250 adding 'lobster/services/analysis/enhanced_singlecell_service.py' 2026-01-07T18:09:07,254 adding 'lobster/services/analysis/pseudobulk_service.py' 2026-01-07T18:09:07,256 adding 'lobster/services/analysis/scvi_embedding_service.py' 2026-01-07T18:09:07,259 adding 'lobster/services/analysis/structure_analysis_service.py' 2026-01-07T18:09:07,261 adding 'lobster/services/data_access/__init__.py' 2026-01-07T18:09:07,269 adding 'lobster/services/data_access/content_access_service.py' 2026-01-07T18:09:07,275 adding 'lobster/services/data_access/docling_service.py' 2026-01-07T18:09:07,278 adding 'lobster/services/data_access/geo_download_service.py' 2026-01-07T18:09:07,281 adding 'lobster/services/data_access/geo_fallback_service.py' 2026-01-07T18:09:07,308 adding 'lobster/services/data_access/geo_service.py' 2026-01-07T18:09:07,312 adding 'lobster/services/data_access/massive_download_service.py' 2026-01-07T18:09:07,314 adding 'lobster/services/data_access/pride_download_service.py' 2026-01-07T18:09:07,317 adding 'lobster/services/data_access/protein_structure_fetch_service.py' 2026-01-07T18:09:07,321 adding 'lobster/services/data_access/sra_download_service.py' 2026-01-07T18:09:07,326 adding 'lobster/services/data_access/workspace_content_service.py' 2026-01-07T18:09:07,328 adding 'lobster/services/data_access/geo/__init__.py' 2026-01-07T18:09:07,329 adding 'lobster/services/data_access/geo/constants.py' 2026-01-07T18:09:07,333 adding 'lobster/services/data_access/geo/downloader.py' 2026-01-07T18:09:07,335 adding 'lobster/services/data_access/geo/facade.py' 2026-01-07T18:09:07,342 adding 'lobster/services/data_access/geo/parser.py' 2026-01-07T18:09:07,345 adding 'lobster/services/data_access/geo/strategy.py' 2026-01-07T18:09:07,346 adding 'lobster/services/data_access/geo/loaders/__init__.py' 2026-01-07T18:09:07,349 adding 'lobster/services/data_access/geo/loaders/tenx.py' 2026-01-07T18:09:07,350 adding 'lobster/services/data_access/geo/metadata/__init__.py' 2026-01-07T18:09:07,352 adding 'lobster/services/data_access/geo/sample/__init__.py' 2026-01-07T18:09:07,354 adding 'lobster/services/data_access/geo/utils/__init__.py' 2026-01-07T18:09:07,355 adding 'lobster/services/data_management/__init__.py' 2026-01-07T18:09:07,360 adding 'lobster/services/data_management/concatenation_service.py' 2026-01-07T18:09:07,363 adding 'lobster/services/data_management/modality_management_service.py' 2026-01-07T18:09:07,365 adding 'lobster/services/execution/__init__.py' 2026-01-07T18:09:07,369 adding 'lobster/services/execution/custom_code_execution_service.py' 2026-01-07T18:09:07,371 adding 'lobster/services/execution/execution_context_builder.py' 2026-01-07T18:09:07,373 adding 'lobster/services/metadata/__init__.py' 2026-01-07T18:09:07,375 adding 'lobster/services/metadata/identifier_provenance_service.py' 2026-01-07T18:09:07,379 adding 'lobster/services/metadata/manual_annotation_service.py' 2026-01-07T18:09:07,382 adding 'lobster/services/metadata/metadata_standardization_service.py' 2026-01-07T18:09:07,385 adding 'lobster/services/metadata/metadata_validation_service.py' 2026-01-07T18:09:07,387 adding 'lobster/services/metadata/sample_grouping_service.py' 2026-01-07T18:09:07,389 adding 'lobster/services/metadata/protocol_extraction/__init__.py' 2026-01-07T18:09:07,391 adding 'lobster/services/metadata/protocol_extraction/base.py' 2026-01-07T18:09:07,392 adding 'lobster/services/metadata/protocol_extraction/amplicon/__init__.py' 2026-01-07T18:09:07,394 adding 'lobster/services/metadata/protocol_extraction/amplicon/details.py' 2026-01-07T18:09:07,397 adding 'lobster/services/metadata/protocol_extraction/amplicon/service.py' 2026-01-07T18:09:07,399 adding 'lobster/services/metadata/protocol_extraction/amplicon/resources/primers.json' 2026-01-07T18:09:07,401 adding 'lobster/services/metadata/protocol_extraction/mass_spec/__init__.py' 2026-01-07T18:09:07,403 adding 'lobster/services/metadata/protocol_extraction/mass_spec/details.py' 2026-01-07T18:09:07,404 adding 'lobster/services/metadata/protocol_extraction/mass_spec/service.py' 2026-01-07T18:09:07,406 adding 'lobster/services/metadata/protocol_extraction/rnaseq/__init__.py' 2026-01-07T18:09:07,407 adding 'lobster/services/metadata/protocol_extraction/rnaseq/details.py' 2026-01-07T18:09:07,409 adding 'lobster/services/metadata/protocol_extraction/rnaseq/service.py' 2026-01-07T18:09:07,410 adding 'lobster/services/ml/__init__.py' 2026-01-07T18:09:07,412 adding 'lobster/services/orchestration/__init__.py' 2026-01-07T18:09:07,420 adding 'lobster/services/orchestration/publication_processing_service.py' 2026-01-07T18:09:07,422 adding 'lobster/services/quality/__init__.py' 2026-01-07T18:09:07,427 adding 'lobster/services/quality/preprocessing_service.py' 2026-01-07T18:09:07,431 adding 'lobster/services/quality/quality_service.py' 2026-01-07T18:09:07,433 adding 'lobster/services/templates/__init__.py' 2026-01-07T18:09:07,437 adding 'lobster/services/templates/annotation_templates.py' 2026-01-07T18:09:07,439 adding 'lobster/services/visualization/__init__.py' 2026-01-07T18:09:07,442 adding 'lobster/services/visualization/bulk_visualization_service.py' 2026-01-07T18:09:07,446 adding 'lobster/services/visualization/pymol_visualization_service.py' 2026-01-07T18:09:07,453 adding 'lobster/services/visualization/visualization_service.py' 2026-01-07T18:09:07,455 adding 'lobster/tools/__init__.py' 2026-01-07T18:09:07,458 adding 'lobster/tools/custom_code_tool.py' 2026-01-07T18:09:07,460 adding 'lobster/tools/download_orchestrator.py' 2026-01-07T18:09:07,462 adding 'lobster/tools/enhanced_handoff_tool.py' 2026-01-07T18:09:07,464 adding 'lobster/tools/expert_handoff_manager.py' 2026-01-07T18:09:07,466 adding 'lobster/tools/expert_handoff_patterns.py' 2026-01-07T18:09:07,468 adding 'lobster/tools/geo_downloader.py' 2026-01-07T18:09:07,469 adding 'lobster/tools/geo_parser.py' 2026-01-07T18:09:07,470 adding 'lobster/tools/gpu_detector.py' 2026-01-07T18:09:07,472 adding 'lobster/tools/handoff_tool.py' 2026-01-07T18:09:07,473 adding 'lobster/tools/pipeline_strategy.py' 2026-01-07T18:09:07,477 adding 'lobster/tools/rate_limiter.py' 2026-01-07T18:09:07,479 adding 'lobster/tools/todo_tools.py' 2026-01-07T18:09:07,480 adding 'lobster/tools/url_transforms.py' 2026-01-07T18:09:07,483 adding 'lobster/tools/workflow_tracker.py' 2026-01-07T18:09:07,495 adding 'lobster/tools/workspace_tool.py' 2026-01-07T18:09:07,499 adding 'lobster/tools/archive/publication_service.py' 2026-01-07T18:09:07,502 adding 'lobster/tools/archive/unified_content_service.py' 2026-01-07T18:09:07,504 adding 'lobster/tools/providers/__init__.py' 2026-01-07T18:09:07,506 adding 'lobster/tools/providers/abstract_provider.py' 2026-01-07T18:09:07,508 adding 'lobster/tools/providers/base_provider.py' 2026-01-07T18:09:07,511 adding 'lobster/tools/providers/biopython_entrez_wrapper.py' 2026-01-07T18:09:07,512 adding 'lobster/tools/providers/biorxiv_medrxiv_config.py' 2026-01-07T18:09:07,517 adding 'lobster/tools/providers/biorxiv_medrxiv_provider.py' 2026-01-07T18:09:07,524 adding 'lobster/tools/providers/geo_provider.py' 2026-01-07T18:09:07,525 adding 'lobster/tools/providers/geo_utils.py' 2026-01-07T18:09:07,528 adding 'lobster/tools/providers/massive_provider.py' 2026-01-07T18:09:07,531 adding 'lobster/tools/providers/ncbi_query_builder.py' 2026-01-07T18:09:07,533 adding 'lobster/tools/providers/organism_enum.py' 2026-01-07T18:09:07,535 adding 'lobster/tools/providers/pdb_provider.py' 2026-01-07T18:09:07,542 adding 'lobster/tools/providers/pmc_provider.py' 2026-01-07T18:09:07,544 adding 'lobster/tools/providers/pride_normalizer.py' 2026-01-07T18:09:07,548 adding 'lobster/tools/providers/pride_provider.py' 2026-01-07T18:09:07,550 adding 'lobster/tools/providers/provider_registry.py' 2026-01-07T18:09:07,553 adding 'lobster/tools/providers/publication_resolver.py' 2026-01-07T18:09:07,562 adding 'lobster/tools/providers/pubmed_provider.py' 2026-01-07T18:09:07,569 adding 'lobster/tools/providers/sra_provider.py' 2026-01-07T18:09:07,571 adding 'lobster/tools/providers/structure_provider.py' 2026-01-07T18:09:07,573 adding 'lobster/tools/providers/webpage_provider.py' 2026-01-07T18:09:07,575 adding 'lobster/ui/__init__.py' 2026-01-07T18:09:07,577 adding 'lobster/ui/commands.py' 2026-01-07T18:09:07,579 adding 'lobster/ui/console_manager.py' 2026-01-07T18:09:07,582 adding 'lobster/ui/live_dashboard.py' 2026-01-07T18:09:07,583 adding 'lobster/ui/os_app.py' 2026-01-07T18:09:07,585 adding 'lobster/ui/progress_manager.py' 2026-01-07T18:09:07,587 adding 'lobster/ui/themes.py' 2026-01-07T18:09:07,589 adding 'lobster/ui/callbacks/__init__.py' 2026-01-07T18:09:07,591 adding 'lobster/ui/callbacks/textual_callback.py' 2026-01-07T18:09:07,593 adding 'lobster/ui/components/__init__.py' 2026-01-07T18:09:07,595 adding 'lobster/ui/components/file_tree.py' 2026-01-07T18:09:07,598 adding 'lobster/ui/components/multi_progress.py' 2026-01-07T18:09:07,599 adding 'lobster/ui/components/parallel_workers_progress.py' 2026-01-07T18:09:07,602 adding 'lobster/ui/components/status_display.py' 2026-01-07T18:09:07,603 adding 'lobster/ui/formatters/__init__.py' 2026-01-07T18:09:07,605 adding 'lobster/ui/screens/__init__.py' 2026-01-07T18:09:07,609 adding 'lobster/ui/screens/analysis_screen.py' 2026-01-07T18:09:07,610 adding 'lobster/ui/services/__init__.py' 2026-01-07T18:09:07,612 adding 'lobster/ui/services/error_service.py' 2026-01-07T18:09:07,614 adding 'lobster/ui/widgets/__init__.py' 2026-01-07T18:09:07,616 adding 'lobster/ui/widgets/activity_log.py' 2026-01-07T18:09:07,617 adding 'lobster/ui/widgets/adapters_panel.py' 2026-01-07T18:09:07,619 adding 'lobster/ui/widgets/agents_panel.py' 2026-01-07T18:09:07,620 adding 'lobster/ui/widgets/chat_message.py' 2026-01-07T18:09:07,621 adding 'lobster/ui/widgets/connections_panel.py' 2026-01-07T18:09:07,625 adding 'lobster/ui/widgets/data_hub.py' 2026-01-07T18:09:07,627 adding 'lobster/ui/widgets/error_modal.py' 2026-01-07T18:09:07,628 adding 'lobster/ui/widgets/modality_list.py' 2026-01-07T18:09:07,630 adding 'lobster/ui/widgets/plot_preview.py' 2026-01-07T18:09:07,631 adding 'lobster/ui/widgets/query_prompt.py' 2026-01-07T18:09:07,633 adding 'lobster/ui/widgets/queue_panel.py' 2026-01-07T18:09:07,634 adding 'lobster/ui/widgets/queue_status_bar.py' 2026-01-07T18:09:07,636 adding 'lobster/ui/widgets/results_display.py' 2026-01-07T18:09:07,638 adding 'lobster/ui/widgets/status_bar.py' 2026-01-07T18:09:07,639 adding 'lobster/ui/widgets/system_info.py' 2026-01-07T18:09:07,641 adding 'lobster/ui/widgets/token_usage_panel.py' 2026-01-07T18:09:07,643 adding 'lobster/utils/__init__.py' 2026-01-07T18:09:07,649 adding 'lobster/utils/callbacks.py' 2026-01-07T18:09:07,650 adding 'lobster/utils/deviance.py' 2026-01-07T18:09:07,653 adding 'lobster/utils/error_handlers.py' 2026-01-07T18:09:07,656 adding 'lobster/utils/file_analyzer.py' 2026-01-07T18:09:07,658 adding 'lobster/utils/file_naming.py' 2026-01-07T18:09:07,660 adding 'lobster/utils/json_extractor.py' 2026-01-07T18:09:07,661 adding 'lobster/utils/logger.py' 2026-01-07T18:09:07,663 adding 'lobster/utils/progress_wrapper.py' 2026-01-07T18:09:07,664 adding 'lobster/utils/ssl_utils.py' 2026-01-07T18:09:07,666 adding 'lobster/utils/system.py' 2026-01-07T18:09:07,673 adding 'lobster_ai-0.4.1.2.dist-info/licenses/LICENSE' 2026-01-07T18:09:07,676 adding 'lobster_ai-0.4.1.2.dist-info/METADATA' 2026-01-07T18:09:07,677 adding 'lobster_ai-0.4.1.2.dist-info/WHEEL' 2026-01-07T18:09:07,679 adding 'lobster_ai-0.4.1.2.dist-info/entry_points.txt' 2026-01-07T18:09:07,680 adding 'lobster_ai-0.4.1.2.dist-info/top_level.txt' 2026-01-07T18:09:07,684 adding 'lobster_ai-0.4.1.2.dist-info/RECORD' 2026-01-07T18:09:07,704 removing build/bdist.linux-armv7l/wheel 2026-01-07T18:09:07,898 Building wheel for lobster-ai (pyproject.toml): finished with status 'done' 2026-01-07T18:09:07,934 Created wheel for lobster-ai: filename=lobster_ai-0.4.1.2-py3-none-any.whl size=1346303 sha256=7f38e7703c88c0c7fe4811c9c7b04da6469ca264d3e261e794b0a59376ba4d0e 2026-01-07T18:09:07,935 Stored in directory: /tmp/pip-ephem-wheel-cache-2zozb93q/wheels/fa/ad/cc/939b5c864916877204d6255eceb656039daf584be7d4578f87 2026-01-07T18:09:07,961 Successfully built lobster-ai 2026-01-07T18:09:07,997 Removed build tracker: '/tmp/pip-build-tracker-xfv23ahq'