2026-01-07T20:24:55,107 Created temporary directory: /tmp/pip-ephem-wheel-cache-pcaerc0k 2026-01-07T20:24:55,109 Created temporary directory: /tmp/pip-build-tracker-t8u5god_ 2026-01-07T20:24:55,109 Initialized build tracking at /tmp/pip-build-tracker-t8u5god_ 2026-01-07T20:24:55,110 Created build tracker: /tmp/pip-build-tracker-t8u5god_ 2026-01-07T20:24:55,110 Entered build tracker: /tmp/pip-build-tracker-t8u5god_ 2026-01-07T20:24:55,111 Created temporary directory: /tmp/pip-wheel-cqrxa7j3 2026-01-07T20:24:55,114 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-01-07T20:24:55,117 Created temporary directory: /tmp/pip-ephem-wheel-cache-_7qo4x9x 2026-01-07T20:24:55,142 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-01-07T20:24:55,145 2 location(s) to search for versions of lobster-ai: 2026-01-07T20:24:55,145 * https://pypi.org/simple/lobster-ai/ 2026-01-07T20:24:55,145 * https://www.piwheels.org/simple/lobster-ai/ 2026-01-07T20:24:55,146 Fetching project page and analyzing links: https://pypi.org/simple/lobster-ai/ 2026-01-07T20:24:55,147 Getting page https://pypi.org/simple/lobster-ai/ 2026-01-07T20:24:55,149 Found index url https://pypi.org/simple 2026-01-07T20:24:55,363 Fetched page https://pypi.org/simple/lobster-ai/ as application/vnd.pypi.simple.v1+json 2026-01-07T20:24:55,367 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/25/73/1d1a25243200fd27fb678fc6ba25c4f1675657400551cb051e2f0ba608ec/lobster_ai-0.4.0.6-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-07T20:24:55,368 Found link https://files.pythonhosted.org/packages/70/bb/d1a5b8fb3972b827f824ed05220013d162bbec24be0d8bffe790e535960b/lobster_ai-0.4.0.6.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.0.6 2026-01-07T20:24:55,369 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/28/50/4706e55b526417192c7d0734f9300f26cbaa6f3404a258dc5e23932755d8/lobster_ai-0.4.0.7-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-07T20:24:55,370 Found link https://files.pythonhosted.org/packages/a8/80/ed27ba2c77f7614bf149a697b450c4828da9d56fe5c8d3f0090165bf76fc/lobster_ai-0.4.0.7.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.0.7 2026-01-07T20:24:55,371 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/d6/d8/90aa06db1b87347873b4ce21d57d45a24c7c9a7f357128242401dacf90ee/lobster_ai-0.4.0.8-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-07T20:24:55,372 Found link https://files.pythonhosted.org/packages/69/86/8a4b462df9a8118f3de7e0685672bda6cb876c8345b4434923a5c5e941ff/lobster_ai-0.4.0.8.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.0.8 2026-01-07T20:24:55,373 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/82/31/78340295ff44b67ccc4c5caaa6719063d7474604cd61fa9262fc35d4d956/lobster_ai-0.4.0.9-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-07T20:24:55,375 Found link 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https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-07T20:24:55,379 Found link https://files.pythonhosted.org/packages/26/99/4ba848c11cfd7e2ce9603618c1752cd9a0b6efb80e10057f29cc5f8bcd99/lobster_ai-0.4.1.2.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.1.2 2026-01-07T20:24:55,380 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/c7/1e/4907d9395f6cd0423f68ae362692a305f1667f39cbb14748e2445198c84c/lobster_ai-0.4.1.3-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-07T20:24:55,381 Found link https://files.pythonhosted.org/packages/bf/27/ee3a39812b4ef948a1c918a961b3226551f295303cc9ba81958d83917238/lobster_ai-0.4.1.3.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.1.3 2026-01-07T20:24:55,382 Skipping link: No binaries permitted for lobster-ai: 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0.4.1.5 2026-01-07T20:24:55,386 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/ca/97/988cbb274eec6f1beb4865d431331d0881a1bff32e9c973b18331edd98ff/lobster_ai-0.4.1.6-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-07T20:24:55,387 Found link https://files.pythonhosted.org/packages/42/de/54943a601e8ecc810ab58b7d5a37b5bac1c4f3670d3ebd4004961ef0d28d/lobster_ai-0.4.1.6.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.1.6 2026-01-07T20:24:55,388 Fetching project page and analyzing links: https://www.piwheels.org/simple/lobster-ai/ 2026-01-07T20:24:55,389 Getting page https://www.piwheels.org/simple/lobster-ai/ 2026-01-07T20:24:55,391 Found index url https://www.piwheels.org/simple 2026-01-07T20:24:55,578 Fetched page https://www.piwheels.org/simple/lobster-ai/ as text/html 2026-01-07T20:24:55,582 Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.1.4-py3-none-any.whl#sha256=a999a8b38fc5a8e803c713c25ea79bab7d44829ec37405cad04b6f2c9a7b3667 (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-07T20:24:55,583 Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.1.3-py3-none-any.whl#sha256=80e2e1901c9acbae8f29a51305af7fc23762871021f86168660c0098154ea64d (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-07T20:24:55,583 Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.1.2-py3-none-any.whl#sha256=7f38e7703c88c0c7fe4811c9c7b04da6469ca264d3e261e794b0a59376ba4d0e (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-07T20:24:55,584 Skipping link: No binaries permitted for lobster-ai: 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https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.0.7-py3-none-any.whl#sha256=cbee755d3f7ac5e1cd5b65bfe0309faa4acba90c1a6a1b32036010c45f0868d9 (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-07T20:24:55,586 Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.0.6-py3-none-any.whl#sha256=2d937b84c8a017772656d9ca05d13ea77671ba5c8b1eccb92e4129465a975502 (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-07T20:24:55,587 Skipping link: not a file: https://www.piwheels.org/simple/lobster-ai/ 2026-01-07T20:24:55,587 Skipping link: not a file: https://pypi.org/simple/lobster-ai/ 2026-01-07T20:24:55,607 Given no hashes to check 1 links for project 'lobster-ai': discarding no candidates 2026-01-07T20:24:55,625 Collecting lobster-ai==0.4.1.5 2026-01-07T20:24:55,628 Created temporary directory: /tmp/pip-unpack-nkx4zp3n 2026-01-07T20:24:55,846 Downloading lobster_ai-0.4.1.5.tar.gz (1.2 MB) 2026-01-07T20:24:56,847 Added lobster-ai==0.4.1.5 from https://files.pythonhosted.org/packages/e1/fb/4535dc1c984840956291d1d24e03b91a321639f5a209aa1529becd12d0af/lobster_ai-0.4.1.5.tar.gz to build tracker '/tmp/pip-build-tracker-t8u5god_' 2026-01-07T20:24:56,856 Created temporary directory: /tmp/pip-build-env-gttk3vy5 2026-01-07T20:24:56,860 Installing build dependencies: started 2026-01-07T20:24:56,861 Running command pip subprocess to install build dependencies 2026-01-07T20:24:58,033 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-01-07T20:24:58,696 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-01-07T20:24:58,720 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-01-07T20:25:00,459 Collecting setuptools>=65.0 2026-01-07T20:25:00,548 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2026-01-07T20:25:00,820 Collecting wheel 2026-01-07T20:25:00,837 Using cached https://www.piwheels.org/simple/wheel/wheel-0.45.1-py3-none-any.whl (72 kB) 2026-01-07T20:25:03,827 Installing collected packages: wheel, setuptools 2026-01-07T20:25:04,070 Creating /tmp/pip-build-env-gttk3vy5/overlay/local/bin 2026-01-07T20:25:04,072 changing mode of /tmp/pip-build-env-gttk3vy5/overlay/local/bin/wheel to 755 2026-01-07T20:25:07,632 Successfully installed setuptools-80.9.0 wheel-0.45.1 2026-01-07T20:25:07,907 Installing build dependencies: finished with status 'done' 2026-01-07T20:25:07,913 Getting requirements to build wheel: started 2026-01-07T20:25:07,914 Running command Getting requirements to build wheel 2026-01-07T20:25:08,598 /tmp/pip-build-env-gttk3vy5/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `license` overwritten by `pyproject.toml` 2026-01-07T20:25:08,598 corresp(dist, value, root_dir) 2026-01-07T20:25:08,599 /tmp/pip-build-env-gttk3vy5/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2026-01-07T20:25:08,599 corresp(dist, value, root_dir) 2026-01-07T20:25:08,600 /tmp/pip-build-env-gttk3vy5/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `extras_require` overwritten in `pyproject.toml` (optional-dependencies) 2026-01-07T20:25:08,601 corresp(dist, value, root_dir) 2026-01-07T20:25:08,710 running egg_info 2026-01-07T20:25:08,717 writing lobster_ai.egg-info/PKG-INFO 2026-01-07T20:25:08,747 writing dependency_links to lobster_ai.egg-info/dependency_links.txt 2026-01-07T20:25:08,749 writing entry points to lobster_ai.egg-info/entry_points.txt 2026-01-07T20:25:08,769 writing requirements to lobster_ai.egg-info/requires.txt 2026-01-07T20:25:08,770 writing top-level names to lobster_ai.egg-info/top_level.txt 2026-01-07T20:25:08,919 reading manifest file 'lobster_ai.egg-info/SOURCES.txt' 2026-01-07T20:25:08,938 adding license file 'LICENSE' 2026-01-07T20:25:08,953 writing manifest file 'lobster_ai.egg-info/SOURCES.txt' 2026-01-07T20:25:09,054 Getting requirements to build wheel: finished with status 'done' 2026-01-07T20:25:09,057 Created temporary directory: /tmp/pip-modern-metadata-b8vltfj1 2026-01-07T20:25:09,060 Preparing metadata (pyproject.toml): started 2026-01-07T20:25:09,061 Running command Preparing metadata (pyproject.toml) 2026-01-07T20:25:09,684 /tmp/pip-build-env-gttk3vy5/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `license` overwritten by `pyproject.toml` 2026-01-07T20:25:09,684 corresp(dist, value, root_dir) 2026-01-07T20:25:09,684 /tmp/pip-build-env-gttk3vy5/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2026-01-07T20:25:09,685 corresp(dist, value, root_dir) 2026-01-07T20:25:09,686 /tmp/pip-build-env-gttk3vy5/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `extras_require` overwritten in `pyproject.toml` (optional-dependencies) 2026-01-07T20:25:09,686 corresp(dist, value, root_dir) 2026-01-07T20:25:09,789 running dist_info 2026-01-07T20:25:09,802 creating /tmp/pip-modern-metadata-b8vltfj1/lobster_ai.egg-info 2026-01-07T20:25:09,803 writing /tmp/pip-modern-metadata-b8vltfj1/lobster_ai.egg-info/PKG-INFO 2026-01-07T20:25:09,833 writing dependency_links to /tmp/pip-modern-metadata-b8vltfj1/lobster_ai.egg-info/dependency_links.txt 2026-01-07T20:25:09,835 writing entry points to /tmp/pip-modern-metadata-b8vltfj1/lobster_ai.egg-info/entry_points.txt 2026-01-07T20:25:09,854 writing requirements to /tmp/pip-modern-metadata-b8vltfj1/lobster_ai.egg-info/requires.txt 2026-01-07T20:25:09,856 writing top-level names to /tmp/pip-modern-metadata-b8vltfj1/lobster_ai.egg-info/top_level.txt 2026-01-07T20:25:09,857 writing manifest file '/tmp/pip-modern-metadata-b8vltfj1/lobster_ai.egg-info/SOURCES.txt' 2026-01-07T20:25:09,991 reading manifest file '/tmp/pip-modern-metadata-b8vltfj1/lobster_ai.egg-info/SOURCES.txt' 2026-01-07T20:25:09,994 adding license file 'LICENSE' 2026-01-07T20:25:10,004 writing manifest file '/tmp/pip-modern-metadata-b8vltfj1/lobster_ai.egg-info/SOURCES.txt' 2026-01-07T20:25:10,006 creating '/tmp/pip-modern-metadata-b8vltfj1/lobster_ai-0.4.1.5.dist-info' 2026-01-07T20:25:10,135 Preparing metadata (pyproject.toml): finished with status 'done' 2026-01-07T20:25:10,142 Source in /tmp/pip-wheel-cqrxa7j3/lobster-ai_9a38d908605e4cce838b35fe93fd3b16 has version 0.4.1.5, which satisfies requirement lobster-ai==0.4.1.5 from https://files.pythonhosted.org/packages/e1/fb/4535dc1c984840956291d1d24e03b91a321639f5a209aa1529becd12d0af/lobster_ai-0.4.1.5.tar.gz 2026-01-07T20:25:10,143 Removed lobster-ai==0.4.1.5 from https://files.pythonhosted.org/packages/e1/fb/4535dc1c984840956291d1d24e03b91a321639f5a209aa1529becd12d0af/lobster_ai-0.4.1.5.tar.gz from build tracker '/tmp/pip-build-tracker-t8u5god_' 2026-01-07T20:25:10,153 Created temporary directory: /tmp/pip-unpack-dev3gt9o 2026-01-07T20:25:10,153 Building wheels for collected packages: lobster-ai 2026-01-07T20:25:10,158 Created temporary directory: /tmp/pip-wheel-an5did6o 2026-01-07T20:25:10,158 Destination directory: /tmp/pip-wheel-an5did6o 2026-01-07T20:25:10,160 Building wheel for lobster-ai (pyproject.toml): started 2026-01-07T20:25:10,161 Running command Building wheel for lobster-ai (pyproject.toml) 2026-01-07T20:25:10,773 /tmp/pip-build-env-gttk3vy5/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `license` overwritten by `pyproject.toml` 2026-01-07T20:25:10,773 corresp(dist, value, root_dir) 2026-01-07T20:25:10,774 /tmp/pip-build-env-gttk3vy5/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2026-01-07T20:25:10,775 corresp(dist, value, root_dir) 2026-01-07T20:25:10,775 /tmp/pip-build-env-gttk3vy5/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `extras_require` overwritten in `pyproject.toml` (optional-dependencies) 2026-01-07T20:25:10,776 corresp(dist, value, root_dir) 2026-01-07T20:25:10,867 running bdist_wheel 2026-01-07T20:25:10,888 running build 2026-01-07T20:25:10,889 running build_py 2026-01-07T20:25:10,896 creating build/lib/lobster 2026-01-07T20:25:10,899 copying lobster/version.py -> build/lib/lobster 2026-01-07T20:25:10,901 copying lobster/_version.py -> build/lib/lobster 2026-01-07T20:25:10,903 copying lobster/__main__.py -> build/lib/lobster 2026-01-07T20:25:10,905 copying lobster/cli.py -> build/lib/lobster 2026-01-07T20:25:10,914 copying lobster/main.py -> build/lib/lobster 2026-01-07T20:25:10,916 creating build/lib/lobster/config 2026-01-07T20:25:10,918 copying lobster/config/supervisor_config.py -> build/lib/lobster/config 2026-01-07T20:25:10,921 copying lobster/config/agent_config.py -> build/lib/lobster/config 2026-01-07T20:25:10,923 copying lobster/config/ollama_service.py -> build/lib/lobster/config 2026-01-07T20:25:10,926 copying lobster/config/workspace_config.py -> build/lib/lobster/config 2026-01-07T20:25:10,928 copying lobster/config/base_config.py -> build/lib/lobster/config 2026-01-07T20:25:10,930 copying lobster/config/llm_factory.py -> build/lib/lobster/config 2026-01-07T20:25:10,933 copying lobster/config/global_config.py -> build/lib/lobster/config 2026-01-07T20:25:10,935 copying lobster/config/provider_setup.py -> build/lib/lobster/config 2026-01-07T20:25:10,938 copying lobster/config/config_manager.py -> build/lib/lobster/config 2026-01-07T20:25:10,941 copying lobster/config/agent_registry.py -> build/lib/lobster/config 2026-01-07T20:25:10,943 copying lobster/config/model_service.py -> build/lib/lobster/config 2026-01-07T20:25:10,946 copying lobster/config/__init__.py -> build/lib/lobster/config 2026-01-07T20:25:10,948 copying lobster/config/settings.py -> build/lib/lobster/config 2026-01-07T20:25:10,951 copying lobster/config/agent_capabilities.py -> build/lib/lobster/config 2026-01-07T20:25:10,954 copying lobster/config/subscription_tiers.py -> build/lib/lobster/config 2026-01-07T20:25:10,956 copying lobster/config/constants.py -> build/lib/lobster/config 2026-01-07T20:25:10,959 creating build/lib/lobster/utils 2026-01-07T20:25:10,960 copying lobster/utils/system.py -> build/lib/lobster/utils 2026-01-07T20:25:10,963 copying lobster/utils/callbacks.py -> build/lib/lobster/utils 2026-01-07T20:25:10,966 copying lobster/utils/json_extractor.py -> build/lib/lobster/utils 2026-01-07T20:25:10,968 copying lobster/utils/file_analyzer.py -> build/lib/lobster/utils 2026-01-07T20:25:10,971 copying lobster/utils/__init__.py -> build/lib/lobster/utils 2026-01-07T20:25:10,973 copying lobster/utils/ssl_utils.py -> build/lib/lobster/utils 2026-01-07T20:25:10,975 copying lobster/utils/error_handlers.py -> build/lib/lobster/utils 2026-01-07T20:25:10,978 copying lobster/utils/file_naming.py -> build/lib/lobster/utils 2026-01-07T20:25:10,980 copying lobster/utils/logger.py -> build/lib/lobster/utils 2026-01-07T20:25:10,982 copying lobster/utils/deviance.py -> build/lib/lobster/utils 2026-01-07T20:25:10,984 copying lobster/utils/progress_wrapper.py -> build/lib/lobster/utils 2026-01-07T20:25:10,987 creating build/lib/lobster/cli_internal 2026-01-07T20:25:10,988 copying lobster/cli_internal/__init__.py -> build/lib/lobster/cli_internal 2026-01-07T20:25:10,990 creating build/lib/lobster/lobster_cloud 2026-01-07T20:25:10,991 copying lobster/lobster_cloud/client.py -> build/lib/lobster/lobster_cloud 2026-01-07T20:25:10,994 copying lobster/lobster_cloud/__init__.py -> build/lib/lobster/lobster_cloud 2026-01-07T20:25:10,997 creating build/lib/lobster/tools 2026-01-07T20:25:10,998 copying lobster/tools/expert_handoff_manager.py -> build/lib/lobster/tools 2026-01-07T20:25:11,001 copying lobster/tools/gpu_detector.py -> build/lib/lobster/tools 2026-01-07T20:25:11,003 copying lobster/tools/geo_parser.py -> build/lib/lobster/tools 2026-01-07T20:25:11,005 copying lobster/tools/download_orchestrator.py -> build/lib/lobster/tools 2026-01-07T20:25:11,008 copying lobster/tools/workflow_tracker.py -> build/lib/lobster/tools 2026-01-07T20:25:11,011 copying lobster/tools/todo_tools.py -> build/lib/lobster/tools 2026-01-07T20:25:11,013 copying lobster/tools/custom_code_tool.py -> build/lib/lobster/tools 2026-01-07T20:25:11,016 copying lobster/tools/rate_limiter.py -> build/lib/lobster/tools 2026-01-07T20:25:11,020 copying lobster/tools/expert_handoff_patterns.py -> build/lib/lobster/tools 2026-01-07T20:25:11,022 copying lobster/tools/pipeline_strategy.py -> build/lib/lobster/tools 2026-01-07T20:25:11,024 copying lobster/tools/geo_downloader.py -> build/lib/lobster/tools 2026-01-07T20:25:11,026 copying lobster/tools/__init__.py -> build/lib/lobster/tools 2026-01-07T20:25:11,028 copying lobster/tools/enhanced_handoff_tool.py -> build/lib/lobster/tools 2026-01-07T20:25:11,031 copying lobster/tools/handoff_tool.py -> build/lib/lobster/tools 2026-01-07T20:25:11,034 copying lobster/tools/url_transforms.py -> build/lib/lobster/tools 2026-01-07T20:25:11,036 copying lobster/tools/workspace_tool.py -> build/lib/lobster/tools 2026-01-07T20:25:11,041 creating build/lib/lobster/core 2026-01-07T20:25:11,042 copying lobster/core/notebook_validator.py -> build/lib/lobster/core 2026-01-07T20:25:11,045 copying lobster/core/ir_coverage.py -> build/lib/lobster/core 2026-01-07T20:25:11,048 copying lobster/core/exceptions.py -> build/lib/lobster/core 2026-01-07T20:25:11,051 copying lobster/core/plugin_loader.py -> build/lib/lobster/core 2026-01-07T20:25:11,054 copying lobster/core/provenance.py -> build/lib/lobster/core 2026-01-07T20:25:11,056 copying lobster/core/client.py -> build/lib/lobster/core 2026-01-07T20:25:11,060 copying lobster/core/data_manager_v2.py -> build/lib/lobster/core 2026-01-07T20:25:11,065 copying lobster/core/publication_queue.py -> build/lib/lobster/core 2026-01-07T20:25:11,068 copying lobster/core/plot_manager.py -> build/lib/lobster/core 2026-01-07T20:25:11,071 copying lobster/core/archive_utils.py -> build/lib/lobster/core 2026-01-07T20:25:11,073 copying lobster/core/__init__.py -> build/lib/lobster/core 2026-01-07T20:25:11,075 copying lobster/core/analysis_ir.py -> build/lib/lobster/core 2026-01-07T20:25:11,078 copying lobster/core/config_resolver.py -> build/lib/lobster/core 2026-01-07T20:25:11,081 copying lobster/core/notebook_exporter.py -> build/lib/lobster/core 2026-01-07T20:25:11,084 copying lobster/core/license_manager.py -> build/lib/lobster/core 2026-01-07T20:25:11,087 copying lobster/core/component_registry.py -> build/lib/lobster/core 2026-01-07T20:25:11,089 copying lobster/core/notebook_executor.py -> build/lib/lobster/core 2026-01-07T20:25:11,092 copying lobster/core/download_queue.py -> build/lib/lobster/core 2026-01-07T20:25:11,094 copying lobster/core/queue_storage.py -> build/lib/lobster/core 2026-01-07T20:25:11,096 copying lobster/core/ris_parser.py -> build/lib/lobster/core 2026-01-07T20:25:11,099 copying lobster/core/workspace.py -> build/lib/lobster/core 2026-01-07T20:25:11,101 creating build/lib/lobster/ui 2026-01-07T20:25:11,102 copying lobster/ui/console_manager.py -> build/lib/lobster/ui 2026-01-07T20:25:11,105 copying lobster/ui/progress_manager.py -> build/lib/lobster/ui 2026-01-07T20:25:11,108 copying lobster/ui/live_dashboard.py -> build/lib/lobster/ui 2026-01-07T20:25:11,111 copying lobster/ui/themes.py -> build/lib/lobster/ui 2026-01-07T20:25:11,113 copying lobster/ui/os_app.py -> build/lib/lobster/ui 2026-01-07T20:25:11,115 copying lobster/ui/__init__.py -> build/lib/lobster/ui 2026-01-07T20:25:11,117 copying lobster/ui/commands.py -> build/lib/lobster/ui 2026-01-07T20:25:11,120 creating build/lib/lobster/services 2026-01-07T20:25:11,121 copying lobster/services/__init__.py -> build/lib/lobster/services 2026-01-07T20:25:11,124 creating build/lib/lobster/agents 2026-01-07T20:25:11,125 copying lobster/agents/draw_graph.py -> build/lib/lobster/agents 2026-01-07T20:25:11,127 copying lobster/agents/graph.py -> build/lib/lobster/agents 2026-01-07T20:25:11,130 copying lobster/agents/data_expert_assistant.py -> build/lib/lobster/agents 2026-01-07T20:25:11,133 copying lobster/agents/data_expert.py -> build/lib/lobster/agents 2026-01-07T20:25:11,137 copying lobster/agents/state.py -> build/lib/lobster/agents 2026-01-07T20:25:11,139 copying lobster/agents/__init__.py -> build/lib/lobster/agents 2026-01-07T20:25:11,141 copying lobster/agents/research_agent.py -> build/lib/lobster/agents 2026-01-07T20:25:11,146 copying lobster/agents/visualization_expert.py -> build/lib/lobster/agents 2026-01-07T20:25:11,149 copying lobster/agents/supervisor.py -> build/lib/lobster/agents 2026-01-07T20:25:11,152 creating build/lib/lobster/config/providers 2026-01-07T20:25:11,153 copying lobster/config/providers/ollama_provider.py -> build/lib/lobster/config/providers 2026-01-07T20:25:11,156 copying lobster/config/providers/bedrock_provider.py -> build/lib/lobster/config/providers 2026-01-07T20:25:11,159 copying lobster/config/providers/__init__.py -> build/lib/lobster/config/providers 2026-01-07T20:25:11,161 copying lobster/config/providers/registry.py -> build/lib/lobster/config/providers 2026-01-07T20:25:11,164 copying lobster/config/providers/gemini_provider.py -> build/lib/lobster/config/providers 2026-01-07T20:25:11,166 copying lobster/config/providers/base_provider.py -> build/lib/lobster/config/providers 2026-01-07T20:25:11,169 copying lobster/config/providers/anthropic_provider.py -> build/lib/lobster/config/providers 2026-01-07T20:25:11,172 creating build/lib/lobster/cli_internal/utils 2026-01-07T20:25:11,173 copying lobster/cli_internal/utils/path_resolution.py -> build/lib/lobster/cli_internal/utils 2026-01-07T20:25:11,175 copying lobster/cli_internal/utils/__init__.py -> build/lib/lobster/cli_internal/utils 2026-01-07T20:25:11,178 creating build/lib/lobster/cli_internal/commands 2026-01-07T20:25:11,179 copying lobster/cli_internal/commands/output_adapter.py -> build/lib/lobster/cli_internal/commands 2026-01-07T20:25:11,182 copying lobster/cli_internal/commands/__init__.py -> build/lib/lobster/cli_internal/commands 2026-01-07T20:25:11,185 creating build/lib/lobster/cli_internal/commands/heavy 2026-01-07T20:25:11,186 copying lobster/cli_internal/commands/heavy/visualization_commands.py -> build/lib/lobster/cli_internal/commands/heavy 2026-01-07T20:25:11,189 copying lobster/cli_internal/commands/heavy/__init__.py -> build/lib/lobster/cli_internal/commands/heavy 2026-01-07T20:25:11,191 copying lobster/cli_internal/commands/heavy/modality_commands.py -> build/lib/lobster/cli_internal/commands/heavy 2026-01-07T20:25:11,194 copying lobster/cli_internal/commands/heavy/data_commands.py -> build/lib/lobster/cli_internal/commands/heavy 2026-01-07T20:25:11,197 creating build/lib/lobster/cli_internal/commands/light 2026-01-07T20:25:11,198 copying lobster/cli_internal/commands/light/workspace_commands.py -> build/lib/lobster/cli_internal/commands/light 2026-01-07T20:25:11,201 copying lobster/cli_internal/commands/light/__init__.py -> build/lib/lobster/cli_internal/commands/light 2026-01-07T20:25:11,203 copying lobster/cli_internal/commands/light/pipeline_commands.py -> build/lib/lobster/cli_internal/commands/light 2026-01-07T20:25:11,205 copying lobster/cli_internal/commands/light/queue_commands.py -> build/lib/lobster/cli_internal/commands/light 2026-01-07T20:25:11,208 copying lobster/cli_internal/commands/light/config_commands.py -> build/lib/lobster/cli_internal/commands/light 2026-01-07T20:25:11,211 copying lobster/cli_internal/commands/light/metadata_commands.py -> build/lib/lobster/cli_internal/commands/light 2026-01-07T20:25:11,213 copying lobster/cli_internal/commands/light/file_commands.py -> build/lib/lobster/cli_internal/commands/light 2026-01-07T20:25:11,217 creating build/lib/lobster/tools/providers 2026-01-07T20:25:11,218 copying lobster/tools/providers/biorxiv_medrxiv_provider.py -> build/lib/lobster/tools/providers 2026-01-07T20:25:11,222 copying lobster/tools/providers/geo_provider.py -> build/lib/lobster/tools/providers 2026-01-07T20:25:11,225 copying lobster/tools/providers/biorxiv_medrxiv_config.py -> build/lib/lobster/tools/providers 2026-01-07T20:25:11,227 copying lobster/tools/providers/organism_enum.py -> build/lib/lobster/tools/providers 2026-01-07T20:25:11,229 copying lobster/tools/providers/publication_resolver.py -> build/lib/lobster/tools/providers 2026-01-07T20:25:11,232 copying lobster/tools/providers/pride_provider.py -> build/lib/lobster/tools/providers 2026-01-07T20:25:11,235 copying lobster/tools/providers/webpage_provider.py -> build/lib/lobster/tools/providers 2026-01-07T20:25:11,238 copying lobster/tools/providers/massive_provider.py -> build/lib/lobster/tools/providers 2026-01-07T20:25:11,241 copying lobster/tools/providers/ncbi_query_builder.py -> build/lib/lobster/tools/providers 2026-01-07T20:25:11,243 copying lobster/tools/providers/__init__.py -> build/lib/lobster/tools/providers 2026-01-07T20:25:11,245 copying lobster/tools/providers/pdb_provider.py -> build/lib/lobster/tools/providers 2026-01-07T20:25:11,248 copying lobster/tools/providers/pmc_provider.py -> build/lib/lobster/tools/providers 2026-01-07T20:25:11,252 copying lobster/tools/providers/biopython_entrez_wrapper.py -> build/lib/lobster/tools/providers 2026-01-07T20:25:11,255 copying lobster/tools/providers/abstract_provider.py -> build/lib/lobster/tools/providers 2026-01-07T20:25:11,257 copying lobster/tools/providers/pride_normalizer.py -> build/lib/lobster/tools/providers 2026-01-07T20:25:11,260 copying lobster/tools/providers/geo_utils.py -> build/lib/lobster/tools/providers 2026-01-07T20:25:11,263 copying lobster/tools/providers/structure_provider.py -> build/lib/lobster/tools/providers 2026-01-07T20:25:11,266 copying lobster/tools/providers/base_provider.py -> build/lib/lobster/tools/providers 2026-01-07T20:25:11,269 copying lobster/tools/providers/pubmed_provider.py -> build/lib/lobster/tools/providers 2026-01-07T20:25:11,272 copying lobster/tools/providers/provider_registry.py -> build/lib/lobster/tools/providers 2026-01-07T20:25:11,275 copying lobster/tools/providers/sra_provider.py -> build/lib/lobster/tools/providers 2026-01-07T20:25:11,279 creating build/lib/lobster/tools/archive 2026-01-07T20:25:11,280 copying lobster/tools/archive/unified_content_service.py -> build/lib/lobster/tools/archive 2026-01-07T20:25:11,283 copying lobster/tools/archive/publication_service.py -> build/lib/lobster/tools/archive 2026-01-07T20:25:11,286 creating build/lib/lobster/core/identifiers 2026-01-07T20:25:11,287 copying lobster/core/identifiers/accession_resolver.py -> build/lib/lobster/core/identifiers 2026-01-07T20:25:11,291 copying lobster/core/identifiers/__init__.py -> build/lib/lobster/core/identifiers 2026-01-07T20:25:11,293 creating build/lib/lobster/core/backends 2026-01-07T20:25:11,294 copying lobster/core/backends/base.py -> build/lib/lobster/core/backends 2026-01-07T20:25:11,297 copying lobster/core/backends/h5ad_backend.py -> build/lib/lobster/core/backends 2026-01-07T20:25:11,300 copying lobster/core/backends/__init__.py -> build/lib/lobster/core/backends 2026-01-07T20:25:11,302 copying lobster/core/backends/mudata_backend.py -> build/lib/lobster/core/backends 2026-01-07T20:25:11,305 creating build/lib/lobster/core/adapters 2026-01-07T20:25:11,306 copying lobster/core/adapters/base.py -> build/lib/lobster/core/adapters 2026-01-07T20:25:11,309 copying lobster/core/adapters/pseudobulk_adapter.py -> build/lib/lobster/core/adapters 2026-01-07T20:25:11,312 copying lobster/core/adapters/proteomics_adapter.py -> build/lib/lobster/core/adapters 2026-01-07T20:25:11,315 copying lobster/core/adapters/__init__.py -> build/lib/lobster/core/adapters 2026-01-07T20:25:11,316 copying lobster/core/adapters/protein_structure_adapter.py -> build/lib/lobster/core/adapters 2026-01-07T20:25:11,319 copying lobster/core/adapters/transcriptomics_adapter.py -> build/lib/lobster/core/adapters 2026-01-07T20:25:11,322 creating build/lib/lobster/core/schemas 2026-01-07T20:25:11,323 copying lobster/core/schemas/database_registry.py -> build/lib/lobster/core/schemas 2026-01-07T20:25:11,326 copying lobster/core/schemas/export_schemas.py -> build/lib/lobster/core/schemas 2026-01-07T20:25:11,329 copying lobster/core/schemas/validation.py -> build/lib/lobster/core/schemas 2026-01-07T20:25:11,332 copying lobster/core/schemas/transcriptomics.py -> build/lib/lobster/core/schemas 2026-01-07T20:25:11,336 copying lobster/core/schemas/metagenomics.py -> build/lib/lobster/core/schemas 2026-01-07T20:25:11,339 copying lobster/core/schemas/metabolomics.py -> build/lib/lobster/core/schemas 2026-01-07T20:25:11,341 copying lobster/core/schemas/publication_queue.py -> build/lib/lobster/core/schemas 2026-01-07T20:25:11,344 copying lobster/core/schemas/protein_structure.py -> build/lib/lobster/core/schemas 2026-01-07T20:25:11,347 copying lobster/core/schemas/download_urls.py -> build/lib/lobster/core/schemas 2026-01-07T20:25:11,349 copying lobster/core/schemas/__init__.py -> build/lib/lobster/core/schemas 2026-01-07T20:25:11,351 copying lobster/core/schemas/sra.py -> build/lib/lobster/core/schemas 2026-01-07T20:25:11,354 copying lobster/core/schemas/database_mappings.py -> build/lib/lobster/core/schemas 2026-01-07T20:25:11,357 copying lobster/core/schemas/download_queue.py -> build/lib/lobster/core/schemas 2026-01-07T20:25:11,360 copying lobster/core/schemas/proteomics.py -> build/lib/lobster/core/schemas 2026-01-07T20:25:11,363 creating build/lib/lobster/core/utils 2026-01-07T20:25:11,364 copying lobster/core/utils/h5ad_utils.py -> build/lib/lobster/core/utils 2026-01-07T20:25:11,367 copying lobster/core/utils/__init__.py -> build/lib/lobster/core/utils 2026-01-07T20:25:11,370 creating build/lib/lobster/core/interfaces 2026-01-07T20:25:11,371 copying lobster/core/interfaces/adapter.py -> build/lib/lobster/core/interfaces 2026-01-07T20:25:11,373 copying lobster/core/interfaces/validator.py -> build/lib/lobster/core/interfaces 2026-01-07T20:25:11,376 copying lobster/core/interfaces/base_client.py -> build/lib/lobster/core/interfaces 2026-01-07T20:25:11,378 copying lobster/core/interfaces/backend.py -> build/lib/lobster/core/interfaces 2026-01-07T20:25:11,381 copying lobster/core/interfaces/__init__.py -> build/lib/lobster/core/interfaces 2026-01-07T20:25:11,383 copying lobster/core/interfaces/download_service.py -> build/lib/lobster/core/interfaces 2026-01-07T20:25:11,386 creating build/lib/lobster/ui/widgets 2026-01-07T20:25:11,387 copying lobster/ui/widgets/query_prompt.py -> build/lib/lobster/ui/widgets 2026-01-07T20:25:11,389 copying lobster/ui/widgets/error_modal.py -> build/lib/lobster/ui/widgets 2026-01-07T20:25:11,391 copying lobster/ui/widgets/chat_message.py -> build/lib/lobster/ui/widgets 2026-01-07T20:25:11,393 copying lobster/ui/widgets/queue_status_bar.py -> build/lib/lobster/ui/widgets 2026-01-07T20:25:11,395 copying lobster/ui/widgets/activity_log.py -> build/lib/lobster/ui/widgets 2026-01-07T20:25:11,397 copying lobster/ui/widgets/results_display.py -> build/lib/lobster/ui/widgets 2026-01-07T20:25:11,399 copying lobster/ui/widgets/connections_panel.py -> build/lib/lobster/ui/widgets 2026-01-07T20:25:11,401 copying lobster/ui/widgets/data_hub.py -> build/lib/lobster/ui/widgets 2026-01-07T20:25:11,404 copying lobster/ui/widgets/token_usage_panel.py -> build/lib/lobster/ui/widgets 2026-01-07T20:25:11,406 copying lobster/ui/widgets/__init__.py -> build/lib/lobster/ui/widgets 2026-01-07T20:25:11,408 copying lobster/ui/widgets/agents_panel.py -> build/lib/lobster/ui/widgets 2026-01-07T20:25:11,410 copying lobster/ui/widgets/adapters_panel.py -> build/lib/lobster/ui/widgets 2026-01-07T20:25:11,412 copying lobster/ui/widgets/plot_preview.py -> build/lib/lobster/ui/widgets 2026-01-07T20:25:11,415 copying lobster/ui/widgets/queue_panel.py -> build/lib/lobster/ui/widgets 2026-01-07T20:25:11,417 copying lobster/ui/widgets/system_info.py -> build/lib/lobster/ui/widgets 2026-01-07T20:25:11,420 copying lobster/ui/widgets/modality_list.py -> build/lib/lobster/ui/widgets 2026-01-07T20:25:11,421 copying lobster/ui/widgets/status_bar.py -> build/lib/lobster/ui/widgets 2026-01-07T20:25:11,424 creating build/lib/lobster/ui/callbacks 2026-01-07T20:25:11,425 copying lobster/ui/callbacks/__init__.py -> build/lib/lobster/ui/callbacks 2026-01-07T20:25:11,427 copying lobster/ui/callbacks/textual_callback.py -> build/lib/lobster/ui/callbacks 2026-01-07T20:25:11,430 creating build/lib/lobster/ui/screens 2026-01-07T20:25:11,431 copying lobster/ui/screens/analysis_screen.py -> build/lib/lobster/ui/screens 2026-01-07T20:25:11,434 copying lobster/ui/screens/__init__.py -> build/lib/lobster/ui/screens 2026-01-07T20:25:11,436 creating build/lib/lobster/ui/formatters 2026-01-07T20:25:11,438 copying lobster/ui/formatters/__init__.py -> build/lib/lobster/ui/formatters 2026-01-07T20:25:11,440 creating build/lib/lobster/ui/services 2026-01-07T20:25:11,441 copying lobster/ui/services/__init__.py -> build/lib/lobster/ui/services 2026-01-07T20:25:11,443 copying lobster/ui/services/error_service.py -> build/lib/lobster/ui/services 2026-01-07T20:25:11,446 creating build/lib/lobster/ui/components 2026-01-07T20:25:11,447 copying lobster/ui/components/status_display.py -> build/lib/lobster/ui/components 2026-01-07T20:25:11,450 copying lobster/ui/components/multi_progress.py -> build/lib/lobster/ui/components 2026-01-07T20:25:11,453 copying lobster/ui/components/file_tree.py -> build/lib/lobster/ui/components 2026-01-07T20:25:11,455 copying lobster/ui/components/parallel_workers_progress.py -> build/lib/lobster/ui/components 2026-01-07T20:25:11,457 copying lobster/ui/components/__init__.py -> build/lib/lobster/ui/components 2026-01-07T20:25:11,460 creating build/lib/lobster/services/data_management 2026-01-07T20:25:11,461 copying lobster/services/data_management/concatenation_service.py -> build/lib/lobster/services/data_management 2026-01-07T20:25:11,464 copying lobster/services/data_management/__init__.py -> build/lib/lobster/services/data_management 2026-01-07T20:25:11,466 copying lobster/services/data_management/modality_management_service.py -> build/lib/lobster/services/data_management 2026-01-07T20:25:11,469 creating build/lib/lobster/services/metadata 2026-01-07T20:25:11,470 copying lobster/services/metadata/manual_annotation_service.py -> build/lib/lobster/services/metadata 2026-01-07T20:25:11,473 copying lobster/services/metadata/metadata_validation_service.py -> build/lib/lobster/services/metadata 2026-01-07T20:25:11,476 copying lobster/services/metadata/__init__.py -> build/lib/lobster/services/metadata 2026-01-07T20:25:11,478 copying lobster/services/metadata/identifier_provenance_service.py -> build/lib/lobster/services/metadata 2026-01-07T20:25:11,481 copying lobster/services/metadata/sample_grouping_service.py -> build/lib/lobster/services/metadata 2026-01-07T20:25:11,483 copying lobster/services/metadata/metadata_standardization_service.py -> build/lib/lobster/services/metadata 2026-01-07T20:25:11,486 creating build/lib/lobster/services/orchestration 2026-01-07T20:25:11,487 copying lobster/services/orchestration/__init__.py -> build/lib/lobster/services/orchestration 2026-01-07T20:25:11,489 copying lobster/services/orchestration/publication_processing_service.py -> build/lib/lobster/services/orchestration 2026-01-07T20:25:11,493 creating build/lib/lobster/services/ml 2026-01-07T20:25:11,494 copying lobster/services/ml/__init__.py -> build/lib/lobster/services/ml 2026-01-07T20:25:11,496 creating build/lib/lobster/services/analysis 2026-01-07T20:25:11,498 copying lobster/services/analysis/enhanced_singlecell_service.py -> build/lib/lobster/services/analysis 2026-01-07T20:25:11,501 copying lobster/services/analysis/scvi_embedding_service.py -> build/lib/lobster/services/analysis 2026-01-07T20:25:11,504 copying lobster/services/analysis/differential_formula_service.py -> build/lib/lobster/services/analysis 2026-01-07T20:25:11,507 copying lobster/services/analysis/structure_analysis_service.py -> build/lib/lobster/services/analysis 2026-01-07T20:25:11,509 copying lobster/services/analysis/bulk_rnaseq_service.py -> build/lib/lobster/services/analysis 2026-01-07T20:25:11,513 copying lobster/services/analysis/clustering_service.py -> build/lib/lobster/services/analysis 2026-01-07T20:25:11,517 copying lobster/services/analysis/__init__.py -> build/lib/lobster/services/analysis 2026-01-07T20:25:11,518 copying lobster/services/analysis/pseudobulk_service.py -> build/lib/lobster/services/analysis 2026-01-07T20:25:11,522 creating build/lib/lobster/services/visualization 2026-01-07T20:25:11,523 copying lobster/services/visualization/visualization_service.py -> build/lib/lobster/services/visualization 2026-01-07T20:25:11,527 copying lobster/services/visualization/pymol_visualization_service.py -> build/lib/lobster/services/visualization 2026-01-07T20:25:11,529 copying lobster/services/visualization/__init__.py -> build/lib/lobster/services/visualization 2026-01-07T20:25:11,531 copying lobster/services/visualization/bulk_visualization_service.py -> build/lib/lobster/services/visualization 2026-01-07T20:25:11,534 creating build/lib/lobster/services/quality 2026-01-07T20:25:11,535 copying lobster/services/quality/quality_service.py -> build/lib/lobster/services/quality 2026-01-07T20:25:11,539 copying lobster/services/quality/preprocessing_service.py -> build/lib/lobster/services/quality 2026-01-07T20:25:11,542 copying lobster/services/quality/__init__.py -> build/lib/lobster/services/quality 2026-01-07T20:25:11,544 creating build/lib/lobster/services/data_access 2026-01-07T20:25:11,545 copying lobster/services/data_access/pride_download_service.py -> build/lib/lobster/services/data_access 2026-01-07T20:25:11,548 copying lobster/services/data_access/geo_fallback_service.py -> build/lib/lobster/services/data_access 2026-01-07T20:25:11,551 copying lobster/services/data_access/massive_download_service.py -> build/lib/lobster/services/data_access 2026-01-07T20:25:11,553 copying lobster/services/data_access/docling_service.py -> build/lib/lobster/services/data_access 2026-01-07T20:25:11,557 copying lobster/services/data_access/__init__.py -> build/lib/lobster/services/data_access 2026-01-07T20:25:11,559 copying lobster/services/data_access/content_access_service.py -> build/lib/lobster/services/data_access 2026-01-07T20:25:11,562 copying lobster/services/data_access/geo_download_service.py -> build/lib/lobster/services/data_access 2026-01-07T20:25:11,565 copying lobster/services/data_access/workspace_content_service.py -> build/lib/lobster/services/data_access 2026-01-07T20:25:11,568 copying lobster/services/data_access/protein_structure_fetch_service.py -> build/lib/lobster/services/data_access 2026-01-07T20:25:11,571 copying lobster/services/data_access/sra_download_service.py -> build/lib/lobster/services/data_access 2026-01-07T20:25:11,574 copying lobster/services/data_access/geo_service.py -> build/lib/lobster/services/data_access 2026-01-07T20:25:11,582 creating build/lib/lobster/services/templates 2026-01-07T20:25:11,583 copying lobster/services/templates/annotation_templates.py -> build/lib/lobster/services/templates 2026-01-07T20:25:11,586 copying lobster/services/templates/__init__.py -> build/lib/lobster/services/templates 2026-01-07T20:25:11,589 creating build/lib/lobster/services/execution 2026-01-07T20:25:11,590 copying lobster/services/execution/execution_context_builder.py -> build/lib/lobster/services/execution 2026-01-07T20:25:11,592 copying lobster/services/execution/custom_code_execution_service.py -> build/lib/lobster/services/execution 2026-01-07T20:25:11,595 copying lobster/services/execution/__init__.py -> build/lib/lobster/services/execution 2026-01-07T20:25:11,597 creating build/lib/lobster/services/metadata/protocol_extraction 2026-01-07T20:25:11,598 copying lobster/services/metadata/protocol_extraction/base.py -> build/lib/lobster/services/metadata/protocol_extraction 2026-01-07T20:25:11,601 copying lobster/services/metadata/protocol_extraction/__init__.py -> build/lib/lobster/services/metadata/protocol_extraction 2026-01-07T20:25:11,603 creating build/lib/lobster/services/metadata/protocol_extraction/mass_spec 2026-01-07T20:25:11,604 copying lobster/services/metadata/protocol_extraction/mass_spec/service.py -> build/lib/lobster/services/metadata/protocol_extraction/mass_spec 2026-01-07T20:25:11,606 copying lobster/services/metadata/protocol_extraction/mass_spec/__init__.py -> build/lib/lobster/services/metadata/protocol_extraction/mass_spec 2026-01-07T20:25:11,608 copying lobster/services/metadata/protocol_extraction/mass_spec/details.py -> build/lib/lobster/services/metadata/protocol_extraction/mass_spec 2026-01-07T20:25:11,610 creating build/lib/lobster/services/metadata/protocol_extraction/amplicon 2026-01-07T20:25:11,612 copying lobster/services/metadata/protocol_extraction/amplicon/service.py -> build/lib/lobster/services/metadata/protocol_extraction/amplicon 2026-01-07T20:25:11,615 copying lobster/services/metadata/protocol_extraction/amplicon/__init__.py -> build/lib/lobster/services/metadata/protocol_extraction/amplicon 2026-01-07T20:25:11,617 copying lobster/services/metadata/protocol_extraction/amplicon/details.py -> build/lib/lobster/services/metadata/protocol_extraction/amplicon 2026-01-07T20:25:11,620 creating build/lib/lobster/services/metadata/protocol_extraction/rnaseq 2026-01-07T20:25:11,621 copying lobster/services/metadata/protocol_extraction/rnaseq/service.py -> build/lib/lobster/services/metadata/protocol_extraction/rnaseq 2026-01-07T20:25:11,623 copying lobster/services/metadata/protocol_extraction/rnaseq/__init__.py -> build/lib/lobster/services/metadata/protocol_extraction/rnaseq 2026-01-07T20:25:11,625 copying lobster/services/metadata/protocol_extraction/rnaseq/details.py -> build/lib/lobster/services/metadata/protocol_extraction/rnaseq 2026-01-07T20:25:11,628 creating build/lib/lobster/services/data_access/geo 2026-01-07T20:25:11,629 copying lobster/services/data_access/geo/parser.py -> build/lib/lobster/services/data_access/geo 2026-01-07T20:25:11,633 copying lobster/services/data_access/geo/facade.py -> build/lib/lobster/services/data_access/geo 2026-01-07T20:25:11,635 copying lobster/services/data_access/geo/__init__.py -> build/lib/lobster/services/data_access/geo 2026-01-07T20:25:11,637 copying lobster/services/data_access/geo/downloader.py -> build/lib/lobster/services/data_access/geo 2026-01-07T20:25:11,640 copying lobster/services/data_access/geo/strategy.py -> build/lib/lobster/services/data_access/geo 2026-01-07T20:25:11,643 copying lobster/services/data_access/geo/constants.py -> build/lib/lobster/services/data_access/geo 2026-01-07T20:25:11,645 creating build/lib/lobster/services/data_access/geo/metadata 2026-01-07T20:25:11,646 copying lobster/services/data_access/geo/metadata/__init__.py -> build/lib/lobster/services/data_access/geo/metadata 2026-01-07T20:25:11,649 creating build/lib/lobster/services/data_access/geo/utils 2026-01-07T20:25:11,650 copying lobster/services/data_access/geo/utils/__init__.py -> build/lib/lobster/services/data_access/geo/utils 2026-01-07T20:25:11,652 creating build/lib/lobster/services/data_access/geo/sample 2026-01-07T20:25:11,653 copying lobster/services/data_access/geo/sample/__init__.py -> build/lib/lobster/services/data_access/geo/sample 2026-01-07T20:25:11,655 creating build/lib/lobster/services/data_access/geo/loaders 2026-01-07T20:25:11,656 copying lobster/services/data_access/geo/loaders/__init__.py -> build/lib/lobster/services/data_access/geo/loaders 2026-01-07T20:25:11,658 copying lobster/services/data_access/geo/loaders/tenx.py -> build/lib/lobster/services/data_access/geo/loaders 2026-01-07T20:25:11,661 creating build/lib/lobster/agents/proteomics 2026-01-07T20:25:11,662 copying lobster/agents/proteomics/state.py -> build/lib/lobster/agents/proteomics 2026-01-07T20:25:11,665 copying lobster/agents/proteomics/__init__.py -> build/lib/lobster/agents/proteomics 2026-01-07T20:25:11,667 creating build/lib/lobster/agents/transcriptomics 2026-01-07T20:25:11,668 copying lobster/agents/transcriptomics/transcriptomics_expert.py -> build/lib/lobster/agents/transcriptomics 2026-01-07T20:25:11,672 copying lobster/agents/transcriptomics/de_analysis_expert.py -> build/lib/lobster/agents/transcriptomics 2026-01-07T20:25:11,676 copying lobster/agents/transcriptomics/shared_tools.py -> build/lib/lobster/agents/transcriptomics 2026-01-07T20:25:11,679 copying lobster/agents/transcriptomics/state.py -> build/lib/lobster/agents/transcriptomics 2026-01-07T20:25:11,681 copying lobster/agents/transcriptomics/__init__.py -> build/lib/lobster/agents/transcriptomics 2026-01-07T20:25:11,683 copying lobster/agents/transcriptomics/annotation_expert.py -> build/lib/lobster/agents/transcriptomics 2026-01-07T20:25:11,687 creating build/lib/lobster/agents/archive 2026-01-07T20:25:11,688 copying lobster/agents/archive/research_agent_assistant.py -> build/lib/lobster/agents/archive 2026-01-07T20:25:11,691 creating build/lib/lobster/agents/langgraph_supervisor 2026-01-07T20:25:11,692 copying lobster/agents/langgraph_supervisor/handoff.py -> build/lib/lobster/agents/langgraph_supervisor 2026-01-07T20:25:11,695 copying lobster/agents/langgraph_supervisor/agent_name.py -> build/lib/lobster/agents/langgraph_supervisor 2026-01-07T20:25:11,697 copying lobster/agents/langgraph_supervisor/__init__.py -> build/lib/lobster/agents/langgraph_supervisor 2026-01-07T20:25:11,699 copying lobster/agents/langgraph_supervisor/supervisor.py -> build/lib/lobster/agents/langgraph_supervisor 2026-01-07T20:25:11,702 running egg_info 2026-01-07T20:25:11,714 writing lobster_ai.egg-info/PKG-INFO 2026-01-07T20:25:11,744 writing dependency_links to lobster_ai.egg-info/dependency_links.txt 2026-01-07T20:25:11,745 writing entry points to lobster_ai.egg-info/entry_points.txt 2026-01-07T20:25:11,765 writing requirements to lobster_ai.egg-info/requires.txt 2026-01-07T20:25:11,766 writing top-level names to lobster_ai.egg-info/top_level.txt 2026-01-07T20:25:11,882 reading manifest file 'lobster_ai.egg-info/SOURCES.txt' 2026-01-07T20:25:11,898 adding license file 'LICENSE' 2026-01-07T20:25:11,912 writing manifest file 'lobster_ai.egg-info/SOURCES.txt' 2026-01-07T20:25:12,001 creating build/lib/lobster/services/metadata/protocol_extraction/amplicon/resources 2026-01-07T20:25:12,002 copying lobster/services/metadata/protocol_extraction/amplicon/resources/primers.json -> build/lib/lobster/services/metadata/protocol_extraction/amplicon/resources 2026-01-07T20:25:12,041 installing to build/bdist.linux-armv7l/wheel 2026-01-07T20:25:12,041 running install 2026-01-07T20:25:12,064 running install_lib 2026-01-07T20:25:12,070 creating build/bdist.linux-armv7l/wheel 2026-01-07T20:25:12,073 creating build/bdist.linux-armv7l/wheel/lobster 2026-01-07T20:25:12,074 creating build/bdist.linux-armv7l/wheel/lobster/config 2026-01-07T20:25:12,076 creating build/bdist.linux-armv7l/wheel/lobster/config/providers 2026-01-07T20:25:12,078 copying build/lib/lobster/config/providers/ollama_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers 2026-01-07T20:25:12,081 copying build/lib/lobster/config/providers/bedrock_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers 2026-01-07T20:25:12,083 copying build/lib/lobster/config/providers/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers 2026-01-07T20:25:12,085 copying build/lib/lobster/config/providers/registry.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers 2026-01-07T20:25:12,088 copying build/lib/lobster/config/providers/gemini_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers 2026-01-07T20:25:12,090 copying build/lib/lobster/config/providers/base_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers 2026-01-07T20:25:12,093 copying build/lib/lobster/config/providers/anthropic_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers 2026-01-07T20:25:12,096 copying build/lib/lobster/config/supervisor_config.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-07T20:25:12,098 copying build/lib/lobster/config/agent_config.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-07T20:25:12,101 copying build/lib/lobster/config/ollama_service.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-07T20:25:12,103 copying build/lib/lobster/config/workspace_config.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-07T20:25:12,106 copying build/lib/lobster/config/base_config.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-07T20:25:12,108 copying build/lib/lobster/config/llm_factory.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-07T20:25:12,110 copying build/lib/lobster/config/global_config.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-07T20:25:12,113 copying build/lib/lobster/config/provider_setup.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-07T20:25:12,115 copying build/lib/lobster/config/config_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-07T20:25:12,118 copying build/lib/lobster/config/agent_registry.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-07T20:25:12,120 copying build/lib/lobster/config/model_service.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-07T20:25:12,123 copying build/lib/lobster/config/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-07T20:25:12,125 copying build/lib/lobster/config/settings.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-07T20:25:12,128 copying build/lib/lobster/config/agent_capabilities.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-07T20:25:12,130 copying build/lib/lobster/config/subscription_tiers.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-07T20:25:12,133 copying build/lib/lobster/config/constants.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-07T20:25:12,135 copying build/lib/lobster/version.py -> build/bdist.linux-armv7l/wheel/./lobster 2026-01-07T20:25:12,137 creating build/bdist.linux-armv7l/wheel/lobster/utils 2026-01-07T20:25:12,139 copying build/lib/lobster/utils/system.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-07T20:25:12,141 copying build/lib/lobster/utils/callbacks.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-07T20:25:12,144 copying build/lib/lobster/utils/json_extractor.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-07T20:25:12,146 copying build/lib/lobster/utils/file_analyzer.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-07T20:25:12,149 copying build/lib/lobster/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-07T20:25:12,151 copying build/lib/lobster/utils/ssl_utils.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-07T20:25:12,153 copying build/lib/lobster/utils/error_handlers.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-07T20:25:12,155 copying build/lib/lobster/utils/file_naming.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-07T20:25:12,158 copying build/lib/lobster/utils/logger.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-07T20:25:12,160 copying build/lib/lobster/utils/deviance.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-07T20:25:12,161 copying build/lib/lobster/utils/progress_wrapper.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-07T20:25:12,164 creating build/bdist.linux-armv7l/wheel/lobster/cli_internal 2026-01-07T20:25:12,165 creating build/bdist.linux-armv7l/wheel/lobster/cli_internal/utils 2026-01-07T20:25:12,167 copying build/lib/lobster/cli_internal/utils/path_resolution.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/utils 2026-01-07T20:25:12,169 copying build/lib/lobster/cli_internal/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/utils 2026-01-07T20:25:12,171 copying build/lib/lobster/cli_internal/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal 2026-01-07T20:25:12,174 creating build/bdist.linux-armv7l/wheel/lobster/cli_internal/commands 2026-01-07T20:25:12,175 copying build/lib/lobster/cli_internal/commands/output_adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands 2026-01-07T20:25:12,178 creating build/bdist.linux-armv7l/wheel/lobster/cli_internal/commands/heavy 2026-01-07T20:25:12,179 copying build/lib/lobster/cli_internal/commands/heavy/visualization_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/heavy 2026-01-07T20:25:12,182 copying build/lib/lobster/cli_internal/commands/heavy/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/heavy 2026-01-07T20:25:12,183 copying build/lib/lobster/cli_internal/commands/heavy/modality_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/heavy 2026-01-07T20:25:12,186 copying build/lib/lobster/cli_internal/commands/heavy/data_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/heavy 2026-01-07T20:25:12,189 creating build/bdist.linux-armv7l/wheel/lobster/cli_internal/commands/light 2026-01-07T20:25:12,190 copying build/lib/lobster/cli_internal/commands/light/workspace_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light 2026-01-07T20:25:12,193 copying build/lib/lobster/cli_internal/commands/light/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light 2026-01-07T20:25:12,195 copying build/lib/lobster/cli_internal/commands/light/pipeline_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light 2026-01-07T20:25:12,198 copying build/lib/lobster/cli_internal/commands/light/queue_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light 2026-01-07T20:25:12,200 copying build/lib/lobster/cli_internal/commands/light/config_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light 2026-01-07T20:25:12,203 copying build/lib/lobster/cli_internal/commands/light/metadata_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light 2026-01-07T20:25:12,206 copying build/lib/lobster/cli_internal/commands/light/file_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light 2026-01-07T20:25:12,209 copying build/lib/lobster/cli_internal/commands/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands 2026-01-07T20:25:12,211 copying build/lib/lobster/_version.py -> build/bdist.linux-armv7l/wheel/./lobster 2026-01-07T20:25:12,212 copying build/lib/lobster/__main__.py -> build/bdist.linux-armv7l/wheel/./lobster 2026-01-07T20:25:12,214 creating build/bdist.linux-armv7l/wheel/lobster/lobster_cloud 2026-01-07T20:25:12,215 copying build/lib/lobster/lobster_cloud/client.py -> build/bdist.linux-armv7l/wheel/./lobster/lobster_cloud 2026-01-07T20:25:12,218 copying build/lib/lobster/lobster_cloud/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/lobster_cloud 2026-01-07T20:25:12,219 copying build/lib/lobster/cli.py -> build/bdist.linux-armv7l/wheel/./lobster 2026-01-07T20:25:12,226 creating build/bdist.linux-armv7l/wheel/lobster/tools 2026-01-07T20:25:12,227 creating build/bdist.linux-armv7l/wheel/lobster/tools/providers 2026-01-07T20:25:12,229 copying build/lib/lobster/tools/providers/biorxiv_medrxiv_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-07T20:25:12,232 copying build/lib/lobster/tools/providers/geo_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-07T20:25:12,235 copying build/lib/lobster/tools/providers/biorxiv_medrxiv_config.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-07T20:25:12,237 copying build/lib/lobster/tools/providers/organism_enum.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-07T20:25:12,239 copying build/lib/lobster/tools/providers/publication_resolver.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-07T20:25:12,242 copying build/lib/lobster/tools/providers/pride_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-07T20:25:12,244 copying build/lib/lobster/tools/providers/webpage_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-07T20:25:12,247 copying build/lib/lobster/tools/providers/massive_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-07T20:25:12,249 copying build/lib/lobster/tools/providers/ncbi_query_builder.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-07T20:25:12,251 copying build/lib/lobster/tools/providers/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-07T20:25:12,253 copying build/lib/lobster/tools/providers/pdb_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-07T20:25:12,256 copying build/lib/lobster/tools/providers/pmc_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-07T20:25:12,259 copying build/lib/lobster/tools/providers/biopython_entrez_wrapper.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-07T20:25:12,261 copying build/lib/lobster/tools/providers/abstract_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-07T20:25:12,263 copying build/lib/lobster/tools/providers/pride_normalizer.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-07T20:25:12,266 copying build/lib/lobster/tools/providers/geo_utils.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-07T20:25:12,268 copying build/lib/lobster/tools/providers/structure_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-07T20:25:12,271 copying build/lib/lobster/tools/providers/base_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-07T20:25:12,273 copying build/lib/lobster/tools/providers/pubmed_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-07T20:25:12,277 copying build/lib/lobster/tools/providers/provider_registry.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-07T20:25:12,279 copying build/lib/lobster/tools/providers/sra_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-07T20:25:12,282 copying build/lib/lobster/tools/expert_handoff_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-07T20:25:12,285 copying build/lib/lobster/tools/gpu_detector.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-07T20:25:12,287 copying build/lib/lobster/tools/geo_parser.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-07T20:25:12,288 copying build/lib/lobster/tools/download_orchestrator.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-07T20:25:12,291 copying build/lib/lobster/tools/workflow_tracker.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-07T20:25:12,294 copying build/lib/lobster/tools/todo_tools.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-07T20:25:12,296 copying build/lib/lobster/tools/custom_code_tool.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-07T20:25:12,298 copying build/lib/lobster/tools/rate_limiter.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-07T20:25:12,301 copying build/lib/lobster/tools/expert_handoff_patterns.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-07T20:25:12,303 copying build/lib/lobster/tools/pipeline_strategy.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-07T20:25:12,305 copying build/lib/lobster/tools/geo_downloader.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-07T20:25:12,307 copying build/lib/lobster/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-07T20:25:12,309 copying build/lib/lobster/tools/enhanced_handoff_tool.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-07T20:25:12,312 copying build/lib/lobster/tools/handoff_tool.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-07T20:25:12,314 creating build/bdist.linux-armv7l/wheel/lobster/tools/archive 2026-01-07T20:25:12,315 copying build/lib/lobster/tools/archive/unified_content_service.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/archive 2026-01-07T20:25:12,318 copying build/lib/lobster/tools/archive/publication_service.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/archive 2026-01-07T20:25:12,321 copying build/lib/lobster/tools/url_transforms.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-07T20:25:12,322 copying build/lib/lobster/tools/workspace_tool.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-07T20:25:12,327 creating build/bdist.linux-armv7l/wheel/lobster/core 2026-01-07T20:25:12,328 copying build/lib/lobster/core/notebook_validator.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-07T20:25:12,331 creating build/bdist.linux-armv7l/wheel/lobster/core/identifiers 2026-01-07T20:25:12,332 copying build/lib/lobster/core/identifiers/accession_resolver.py -> build/bdist.linux-armv7l/wheel/./lobster/core/identifiers 2026-01-07T20:25:12,335 copying build/lib/lobster/core/identifiers/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/identifiers 2026-01-07T20:25:12,337 copying build/lib/lobster/core/ir_coverage.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-07T20:25:12,339 copying build/lib/lobster/core/exceptions.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-07T20:25:12,341 copying build/lib/lobster/core/plugin_loader.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-07T20:25:12,344 copying build/lib/lobster/core/provenance.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-07T20:25:12,346 copying build/lib/lobster/core/client.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-07T20:25:12,351 creating build/bdist.linux-armv7l/wheel/lobster/core/backends 2026-01-07T20:25:12,352 copying build/lib/lobster/core/backends/base.py -> build/bdist.linux-armv7l/wheel/./lobster/core/backends 2026-01-07T20:25:12,354 copying build/lib/lobster/core/backends/h5ad_backend.py -> build/bdist.linux-armv7l/wheel/./lobster/core/backends 2026-01-07T20:25:12,357 copying build/lib/lobster/core/backends/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/backends 2026-01-07T20:25:12,359 copying build/lib/lobster/core/backends/mudata_backend.py -> build/bdist.linux-armv7l/wheel/./lobster/core/backends 2026-01-07T20:25:12,362 creating build/bdist.linux-armv7l/wheel/lobster/core/adapters 2026-01-07T20:25:12,363 copying build/lib/lobster/core/adapters/base.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters 2026-01-07T20:25:12,366 copying build/lib/lobster/core/adapters/pseudobulk_adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters 2026-01-07T20:25:12,368 copying build/lib/lobster/core/adapters/proteomics_adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters 2026-01-07T20:25:12,371 copying build/lib/lobster/core/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters 2026-01-07T20:25:12,373 copying build/lib/lobster/core/adapters/protein_structure_adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters 2026-01-07T20:25:12,375 copying build/lib/lobster/core/adapters/transcriptomics_adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters 2026-01-07T20:25:12,379 creating build/bdist.linux-armv7l/wheel/lobster/core/schemas 2026-01-07T20:25:12,380 copying build/lib/lobster/core/schemas/database_registry.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-07T20:25:12,382 copying build/lib/lobster/core/schemas/export_schemas.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-07T20:25:12,385 copying build/lib/lobster/core/schemas/validation.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-07T20:25:12,388 copying build/lib/lobster/core/schemas/transcriptomics.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-07T20:25:12,391 copying build/lib/lobster/core/schemas/metagenomics.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-07T20:25:12,394 copying build/lib/lobster/core/schemas/metabolomics.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-07T20:25:12,397 copying build/lib/lobster/core/schemas/publication_queue.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-07T20:25:12,399 copying build/lib/lobster/core/schemas/protein_structure.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-07T20:25:12,402 copying build/lib/lobster/core/schemas/download_urls.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-07T20:25:12,405 copying build/lib/lobster/core/schemas/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-07T20:25:12,407 copying build/lib/lobster/core/schemas/sra.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-07T20:25:12,410 copying build/lib/lobster/core/schemas/database_mappings.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-07T20:25:12,413 copying build/lib/lobster/core/schemas/download_queue.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-07T20:25:12,415 copying build/lib/lobster/core/schemas/proteomics.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-07T20:25:12,418 copying build/lib/lobster/core/data_manager_v2.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-07T20:25:12,422 copying build/lib/lobster/core/publication_queue.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-07T20:25:12,425 creating build/bdist.linux-armv7l/wheel/lobster/core/utils 2026-01-07T20:25:12,426 copying build/lib/lobster/core/utils/h5ad_utils.py -> build/bdist.linux-armv7l/wheel/./lobster/core/utils 2026-01-07T20:25:12,429 copying build/lib/lobster/core/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/utils 2026-01-07T20:25:12,431 copying build/lib/lobster/core/plot_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-07T20:25:12,434 copying build/lib/lobster/core/archive_utils.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-07T20:25:12,437 copying build/lib/lobster/core/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-07T20:25:12,439 copying build/lib/lobster/core/analysis_ir.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-07T20:25:12,442 creating build/bdist.linux-armv7l/wheel/lobster/core/interfaces 2026-01-07T20:25:12,443 copying build/lib/lobster/core/interfaces/adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces 2026-01-07T20:25:12,445 copying build/lib/lobster/core/interfaces/validator.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces 2026-01-07T20:25:12,448 copying build/lib/lobster/core/interfaces/base_client.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces 2026-01-07T20:25:12,450 copying build/lib/lobster/core/interfaces/backend.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces 2026-01-07T20:25:12,452 copying build/lib/lobster/core/interfaces/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces 2026-01-07T20:25:12,454 copying build/lib/lobster/core/interfaces/download_service.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces 2026-01-07T20:25:12,457 copying build/lib/lobster/core/config_resolver.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-07T20:25:12,459 copying build/lib/lobster/core/notebook_exporter.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-07T20:25:12,462 copying build/lib/lobster/core/license_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-07T20:25:12,465 copying build/lib/lobster/core/component_registry.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-07T20:25:12,467 copying build/lib/lobster/core/notebook_executor.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-07T20:25:12,470 copying build/lib/lobster/core/download_queue.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-07T20:25:12,472 copying build/lib/lobster/core/queue_storage.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-07T20:25:12,474 copying build/lib/lobster/core/ris_parser.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-07T20:25:12,476 copying build/lib/lobster/core/workspace.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-07T20:25:12,480 creating build/bdist.linux-armv7l/wheel/lobster/ui 2026-01-07T20:25:12,481 copying build/lib/lobster/ui/console_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/ui 2026-01-07T20:25:12,484 creating build/bdist.linux-armv7l/wheel/lobster/ui/widgets 2026-01-07T20:25:12,485 copying build/lib/lobster/ui/widgets/query_prompt.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-07T20:25:12,488 copying build/lib/lobster/ui/widgets/error_modal.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-07T20:25:12,491 copying build/lib/lobster/ui/widgets/chat_message.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-07T20:25:12,493 copying build/lib/lobster/ui/widgets/queue_status_bar.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-07T20:25:12,496 copying build/lib/lobster/ui/widgets/activity_log.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-07T20:25:12,499 copying build/lib/lobster/ui/widgets/results_display.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-07T20:25:12,501 copying build/lib/lobster/ui/widgets/connections_panel.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-07T20:25:12,504 copying build/lib/lobster/ui/widgets/data_hub.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-07T20:25:12,507 copying build/lib/lobster/ui/widgets/token_usage_panel.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-07T20:25:12,510 copying build/lib/lobster/ui/widgets/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-07T20:25:12,512 copying build/lib/lobster/ui/widgets/agents_panel.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-07T20:25:12,515 copying build/lib/lobster/ui/widgets/adapters_panel.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-07T20:25:12,518 copying build/lib/lobster/ui/widgets/plot_preview.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-07T20:25:12,520 copying build/lib/lobster/ui/widgets/queue_panel.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-07T20:25:12,523 copying build/lib/lobster/ui/widgets/system_info.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-07T20:25:12,526 copying build/lib/lobster/ui/widgets/modality_list.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-07T20:25:12,528 copying build/lib/lobster/ui/widgets/status_bar.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-07T20:25:12,531 copying build/lib/lobster/ui/progress_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/ui 2026-01-07T20:25:12,533 copying build/lib/lobster/ui/live_dashboard.py -> build/bdist.linux-armv7l/wheel/./lobster/ui 2026-01-07T20:25:12,536 creating build/bdist.linux-armv7l/wheel/lobster/ui/callbacks 2026-01-07T20:25:12,537 copying build/lib/lobster/ui/callbacks/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/callbacks 2026-01-07T20:25:12,539 copying build/lib/lobster/ui/callbacks/textual_callback.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/callbacks 2026-01-07T20:25:12,542 copying build/lib/lobster/ui/themes.py -> build/bdist.linux-armv7l/wheel/./lobster/ui 2026-01-07T20:25:12,544 copying build/lib/lobster/ui/os_app.py -> build/bdist.linux-armv7l/wheel/./lobster/ui 2026-01-07T20:25:12,547 creating build/bdist.linux-armv7l/wheel/lobster/ui/screens 2026-01-07T20:25:12,548 copying build/lib/lobster/ui/screens/analysis_screen.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/screens 2026-01-07T20:25:12,551 copying build/lib/lobster/ui/screens/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/screens 2026-01-07T20:25:12,553 copying build/lib/lobster/ui/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui 2026-01-07T20:25:12,555 copying build/lib/lobster/ui/commands.py -> build/bdist.linux-armv7l/wheel/./lobster/ui 2026-01-07T20:25:12,558 creating build/bdist.linux-armv7l/wheel/lobster/ui/formatters 2026-01-07T20:25:12,559 copying build/lib/lobster/ui/formatters/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/formatters 2026-01-07T20:25:12,561 creating build/bdist.linux-armv7l/wheel/lobster/ui/services 2026-01-07T20:25:12,562 copying build/lib/lobster/ui/services/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/services 2026-01-07T20:25:12,564 copying build/lib/lobster/ui/services/error_service.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/services 2026-01-07T20:25:12,567 creating build/bdist.linux-armv7l/wheel/lobster/ui/components 2026-01-07T20:25:12,568 copying build/lib/lobster/ui/components/status_display.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/components 2026-01-07T20:25:12,571 copying build/lib/lobster/ui/components/multi_progress.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/components 2026-01-07T20:25:12,574 copying build/lib/lobster/ui/components/file_tree.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/components 2026-01-07T20:25:12,577 copying build/lib/lobster/ui/components/parallel_workers_progress.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/components 2026-01-07T20:25:12,579 copying build/lib/lobster/ui/components/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/components 2026-01-07T20:25:12,581 copying build/lib/lobster/main.py -> build/bdist.linux-armv7l/wheel/./lobster 2026-01-07T20:25:12,583 creating build/bdist.linux-armv7l/wheel/lobster/services 2026-01-07T20:25:12,585 creating build/bdist.linux-armv7l/wheel/lobster/services/data_management 2026-01-07T20:25:12,586 copying build/lib/lobster/services/data_management/concatenation_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_management 2026-01-07T20:25:12,590 copying build/lib/lobster/services/data_management/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_management 2026-01-07T20:25:12,592 copying build/lib/lobster/services/data_management/modality_management_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_management 2026-01-07T20:25:12,595 creating build/bdist.linux-armv7l/wheel/lobster/services/metadata 2026-01-07T20:25:12,596 copying build/lib/lobster/services/metadata/manual_annotation_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata 2026-01-07T20:25:12,599 copying build/lib/lobster/services/metadata/metadata_validation_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata 2026-01-07T20:25:12,602 copying build/lib/lobster/services/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata 2026-01-07T20:25:12,604 creating build/bdist.linux-armv7l/wheel/lobster/services/metadata/protocol_extraction 2026-01-07T20:25:12,605 copying build/lib/lobster/services/metadata/protocol_extraction/base.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction 2026-01-07T20:25:12,608 creating build/bdist.linux-armv7l/wheel/lobster/services/metadata/protocol_extraction/mass_spec 2026-01-07T20:25:12,609 copying build/lib/lobster/services/metadata/protocol_extraction/mass_spec/service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/mass_spec 2026-01-07T20:25:12,611 copying build/lib/lobster/services/metadata/protocol_extraction/mass_spec/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/mass_spec 2026-01-07T20:25:12,613 copying build/lib/lobster/services/metadata/protocol_extraction/mass_spec/details.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/mass_spec 2026-01-07T20:25:12,616 creating build/bdist.linux-armv7l/wheel/lobster/services/metadata/protocol_extraction/amplicon 2026-01-07T20:25:12,617 creating build/bdist.linux-armv7l/wheel/lobster/services/metadata/protocol_extraction/amplicon/resources 2026-01-07T20:25:12,618 copying build/lib/lobster/services/metadata/protocol_extraction/amplicon/resources/primers.json -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/amplicon/resources 2026-01-07T20:25:12,621 copying build/lib/lobster/services/metadata/protocol_extraction/amplicon/service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/amplicon 2026-01-07T20:25:12,623 copying build/lib/lobster/services/metadata/protocol_extraction/amplicon/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/amplicon 2026-01-07T20:25:12,625 copying build/lib/lobster/services/metadata/protocol_extraction/amplicon/details.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/amplicon 2026-01-07T20:25:12,628 creating build/bdist.linux-armv7l/wheel/lobster/services/metadata/protocol_extraction/rnaseq 2026-01-07T20:25:12,629 copying build/lib/lobster/services/metadata/protocol_extraction/rnaseq/service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/rnaseq 2026-01-07T20:25:12,631 copying build/lib/lobster/services/metadata/protocol_extraction/rnaseq/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/rnaseq 2026-01-07T20:25:12,633 copying build/lib/lobster/services/metadata/protocol_extraction/rnaseq/details.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/rnaseq 2026-01-07T20:25:12,635 copying build/lib/lobster/services/metadata/protocol_extraction/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction 2026-01-07T20:25:12,637 copying build/lib/lobster/services/metadata/identifier_provenance_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata 2026-01-07T20:25:12,640 copying build/lib/lobster/services/metadata/sample_grouping_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata 2026-01-07T20:25:12,642 copying build/lib/lobster/services/metadata/metadata_standardization_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata 2026-01-07T20:25:12,645 creating build/bdist.linux-armv7l/wheel/lobster/services/orchestration 2026-01-07T20:25:12,646 copying build/lib/lobster/services/orchestration/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/orchestration 2026-01-07T20:25:12,648 copying build/lib/lobster/services/orchestration/publication_processing_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/orchestration 2026-01-07T20:25:12,652 creating build/bdist.linux-armv7l/wheel/lobster/services/ml 2026-01-07T20:25:12,653 copying build/lib/lobster/services/ml/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/ml 2026-01-07T20:25:12,655 copying build/lib/lobster/services/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services 2026-01-07T20:25:12,657 creating build/bdist.linux-armv7l/wheel/lobster/services/analysis 2026-01-07T20:25:12,658 copying build/lib/lobster/services/analysis/enhanced_singlecell_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-07T20:25:12,661 copying build/lib/lobster/services/analysis/scvi_embedding_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-07T20:25:12,664 copying build/lib/lobster/services/analysis/differential_formula_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-07T20:25:12,666 copying build/lib/lobster/services/analysis/structure_analysis_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-07T20:25:12,669 copying build/lib/lobster/services/analysis/bulk_rnaseq_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-07T20:25:12,673 copying build/lib/lobster/services/analysis/clustering_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-07T20:25:12,678 copying build/lib/lobster/services/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-07T20:25:12,679 copying build/lib/lobster/services/analysis/pseudobulk_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-07T20:25:12,683 creating build/bdist.linux-armv7l/wheel/lobster/services/visualization 2026-01-07T20:25:12,684 copying build/lib/lobster/services/visualization/visualization_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/visualization 2026-01-07T20:25:12,687 copying build/lib/lobster/services/visualization/pymol_visualization_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/visualization 2026-01-07T20:25:12,690 copying build/lib/lobster/services/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/visualization 2026-01-07T20:25:12,692 copying build/lib/lobster/services/visualization/bulk_visualization_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/visualization 2026-01-07T20:25:12,695 creating build/bdist.linux-armv7l/wheel/lobster/services/quality 2026-01-07T20:25:12,696 copying build/lib/lobster/services/quality/quality_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/quality 2026-01-07T20:25:12,699 copying build/lib/lobster/services/quality/preprocessing_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/quality 2026-01-07T20:25:12,702 copying build/lib/lobster/services/quality/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/quality 2026-01-07T20:25:12,705 creating build/bdist.linux-armv7l/wheel/lobster/services/data_access 2026-01-07T20:25:12,706 copying build/lib/lobster/services/data_access/pride_download_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-07T20:25:12,709 copying build/lib/lobster/services/data_access/geo_fallback_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-07T20:25:12,711 copying build/lib/lobster/services/data_access/massive_download_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-07T20:25:12,714 copying build/lib/lobster/services/data_access/docling_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-07T20:25:12,717 copying build/lib/lobster/services/data_access/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-07T20:25:12,719 copying build/lib/lobster/services/data_access/content_access_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-07T20:25:12,723 copying build/lib/lobster/services/data_access/geo_download_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-07T20:25:12,725 copying build/lib/lobster/services/data_access/workspace_content_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-07T20:25:12,728 copying build/lib/lobster/services/data_access/protein_structure_fetch_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-07T20:25:12,731 creating build/bdist.linux-armv7l/wheel/lobster/services/data_access/geo 2026-01-07T20:25:12,732 creating build/bdist.linux-armv7l/wheel/lobster/services/data_access/geo/metadata 2026-01-07T20:25:12,734 copying build/lib/lobster/services/data_access/geo/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo/metadata 2026-01-07T20:25:12,736 creating build/bdist.linux-armv7l/wheel/lobster/services/data_access/geo/utils 2026-01-07T20:25:12,737 copying build/lib/lobster/services/data_access/geo/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo/utils 2026-01-07T20:25:12,739 copying build/lib/lobster/services/data_access/geo/parser.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo 2026-01-07T20:25:12,743 copying build/lib/lobster/services/data_access/geo/facade.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo 2026-01-07T20:25:12,744 copying build/lib/lobster/services/data_access/geo/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo 2026-01-07T20:25:12,747 creating build/bdist.linux-armv7l/wheel/lobster/services/data_access/geo/sample 2026-01-07T20:25:12,748 copying build/lib/lobster/services/data_access/geo/sample/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo/sample 2026-01-07T20:25:12,750 copying build/lib/lobster/services/data_access/geo/downloader.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo 2026-01-07T20:25:12,753 copying build/lib/lobster/services/data_access/geo/strategy.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo 2026-01-07T20:25:12,756 creating build/bdist.linux-armv7l/wheel/lobster/services/data_access/geo/loaders 2026-01-07T20:25:12,757 copying build/lib/lobster/services/data_access/geo/loaders/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo/loaders 2026-01-07T20:25:12,759 copying build/lib/lobster/services/data_access/geo/loaders/tenx.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo/loaders 2026-01-07T20:25:12,762 copying build/lib/lobster/services/data_access/geo/constants.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo 2026-01-07T20:25:12,764 copying build/lib/lobster/services/data_access/sra_download_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-07T20:25:12,767 copying build/lib/lobster/services/data_access/geo_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-07T20:25:12,774 creating build/bdist.linux-armv7l/wheel/lobster/services/templates 2026-01-07T20:25:12,775 copying build/lib/lobster/services/templates/annotation_templates.py -> build/bdist.linux-armv7l/wheel/./lobster/services/templates 2026-01-07T20:25:12,778 copying build/lib/lobster/services/templates/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/templates 2026-01-07T20:25:12,780 creating build/bdist.linux-armv7l/wheel/lobster/services/execution 2026-01-07T20:25:12,781 copying build/lib/lobster/services/execution/execution_context_builder.py -> build/bdist.linux-armv7l/wheel/./lobster/services/execution 2026-01-07T20:25:12,783 copying build/lib/lobster/services/execution/custom_code_execution_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/execution 2026-01-07T20:25:12,786 copying build/lib/lobster/services/execution/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/execution 2026-01-07T20:25:12,789 creating build/bdist.linux-armv7l/wheel/lobster/agents 2026-01-07T20:25:12,790 copying build/lib/lobster/agents/draw_graph.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-07T20:25:12,792 copying build/lib/lobster/agents/graph.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-07T20:25:12,794 copying build/lib/lobster/agents/data_expert_assistant.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-07T20:25:12,797 copying build/lib/lobster/agents/data_expert.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-07T20:25:12,800 copying build/lib/lobster/agents/state.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-07T20:25:12,802 copying build/lib/lobster/agents/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-07T20:25:12,804 copying build/lib/lobster/agents/research_agent.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-07T20:25:12,809 creating build/bdist.linux-armv7l/wheel/lobster/agents/proteomics 2026-01-07T20:25:12,810 copying build/lib/lobster/agents/proteomics/state.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/proteomics 2026-01-07T20:25:12,812 copying build/lib/lobster/agents/proteomics/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/proteomics 2026-01-07T20:25:12,813 copying build/lib/lobster/agents/visualization_expert.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-07T20:25:12,817 creating build/bdist.linux-armv7l/wheel/lobster/agents/transcriptomics 2026-01-07T20:25:12,818 copying build/lib/lobster/agents/transcriptomics/transcriptomics_expert.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics 2026-01-07T20:25:12,821 copying build/lib/lobster/agents/transcriptomics/de_analysis_expert.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics 2026-01-07T20:25:12,824 copying build/lib/lobster/agents/transcriptomics/shared_tools.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics 2026-01-07T20:25:12,828 copying build/lib/lobster/agents/transcriptomics/state.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics 2026-01-07T20:25:12,830 copying build/lib/lobster/agents/transcriptomics/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics 2026-01-07T20:25:12,832 copying build/lib/lobster/agents/transcriptomics/annotation_expert.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics 2026-01-07T20:25:12,838 creating build/bdist.linux-armv7l/wheel/lobster/agents/archive 2026-01-07T20:25:12,839 copying build/lib/lobster/agents/archive/research_agent_assistant.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/archive 2026-01-07T20:25:12,842 copying build/lib/lobster/agents/supervisor.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-07T20:25:12,845 creating build/bdist.linux-armv7l/wheel/lobster/agents/langgraph_supervisor 2026-01-07T20:25:12,846 copying build/lib/lobster/agents/langgraph_supervisor/handoff.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/langgraph_supervisor 2026-01-07T20:25:12,848 copying build/lib/lobster/agents/langgraph_supervisor/agent_name.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/langgraph_supervisor 2026-01-07T20:25:12,851 copying build/lib/lobster/agents/langgraph_supervisor/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/langgraph_supervisor 2026-01-07T20:25:12,852 copying build/lib/lobster/agents/langgraph_supervisor/supervisor.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/langgraph_supervisor 2026-01-07T20:25:12,855 running install_egg_info 2026-01-07T20:25:12,860 Copying lobster_ai.egg-info to build/bdist.linux-armv7l/wheel/./lobster_ai-0.4.1.5-py3.11.egg-info 2026-01-07T20:25:12,872 running install_scripts 2026-01-07T20:25:12,884 creating build/bdist.linux-armv7l/wheel/lobster_ai-0.4.1.5.dist-info/WHEEL 2026-01-07T20:25:12,887 creating '/tmp/pip-wheel-an5did6o/.tmp-qw2w9cpo/lobster_ai-0.4.1.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-01-07T20:25:12,889 adding 'lobster/__main__.py' 2026-01-07T20:25:12,890 adding 'lobster/_version.py' 2026-01-07T20:25:12,917 adding 'lobster/cli.py' 2026-01-07T20:25:12,920 adding 'lobster/main.py' 2026-01-07T20:25:12,921 adding 'lobster/version.py' 2026-01-07T20:25:12,923 adding 'lobster/agents/__init__.py' 2026-01-07T20:25:12,930 adding 'lobster/agents/data_expert.py' 2026-01-07T20:25:12,934 adding 'lobster/agents/data_expert_assistant.py' 2026-01-07T20:25:12,936 adding 'lobster/agents/draw_graph.py' 2026-01-07T20:25:12,938 adding 'lobster/agents/graph.py' 2026-01-07T20:25:12,952 adding 'lobster/agents/research_agent.py' 2026-01-07T20:25:12,955 adding 'lobster/agents/state.py' 2026-01-07T20:25:12,960 adding 'lobster/agents/supervisor.py' 2026-01-07T20:25:12,963 adding 'lobster/agents/visualization_expert.py' 2026-01-07T20:25:12,966 adding 'lobster/agents/archive/research_agent_assistant.py' 2026-01-07T20:25:12,968 adding 'lobster/agents/langgraph_supervisor/__init__.py' 2026-01-07T20:25:12,969 adding 'lobster/agents/langgraph_supervisor/agent_name.py' 2026-01-07T20:25:12,971 adding 'lobster/agents/langgraph_supervisor/handoff.py' 2026-01-07T20:25:12,973 adding 'lobster/agents/langgraph_supervisor/supervisor.py' 2026-01-07T20:25:12,975 adding 'lobster/agents/proteomics/__init__.py' 2026-01-07T20:25:12,977 adding 'lobster/agents/proteomics/state.py' 2026-01-07T20:25:12,978 adding 'lobster/agents/transcriptomics/__init__.py' 2026-01-07T20:25:12,983 adding 'lobster/agents/transcriptomics/annotation_expert.py' 2026-01-07T20:25:12,992 adding 'lobster/agents/transcriptomics/de_analysis_expert.py' 2026-01-07T20:25:12,996 adding 'lobster/agents/transcriptomics/shared_tools.py' 2026-01-07T20:25:12,998 adding 'lobster/agents/transcriptomics/state.py' 2026-01-07T20:25:13,003 adding 'lobster/agents/transcriptomics/transcriptomics_expert.py' 2026-01-07T20:25:13,005 adding 'lobster/cli_internal/__init__.py' 2026-01-07T20:25:13,007 adding 'lobster/cli_internal/commands/__init__.py' 2026-01-07T20:25:13,008 adding 'lobster/cli_internal/commands/output_adapter.py' 2026-01-07T20:25:13,010 adding 'lobster/cli_internal/commands/heavy/__init__.py' 2026-01-07T20:25:13,012 adding 'lobster/cli_internal/commands/heavy/data_commands.py' 2026-01-07T20:25:13,014 adding 'lobster/cli_internal/commands/heavy/modality_commands.py' 2026-01-07T20:25:13,016 adding 'lobster/cli_internal/commands/heavy/visualization_commands.py' 2026-01-07T20:25:13,018 adding 'lobster/cli_internal/commands/light/__init__.py' 2026-01-07T20:25:13,021 adding 'lobster/cli_internal/commands/light/config_commands.py' 2026-01-07T20:25:13,024 adding 'lobster/cli_internal/commands/light/file_commands.py' 2026-01-07T20:25:13,026 adding 'lobster/cli_internal/commands/light/metadata_commands.py' 2026-01-07T20:25:13,028 adding 'lobster/cli_internal/commands/light/pipeline_commands.py' 2026-01-07T20:25:13,030 adding 'lobster/cli_internal/commands/light/queue_commands.py' 2026-01-07T20:25:13,034 adding 'lobster/cli_internal/commands/light/workspace_commands.py' 2026-01-07T20:25:13,036 adding 'lobster/cli_internal/utils/__init__.py' 2026-01-07T20:25:13,038 adding 'lobster/cli_internal/utils/path_resolution.py' 2026-01-07T20:25:13,040 adding 'lobster/config/__init__.py' 2026-01-07T20:25:13,042 adding 'lobster/config/agent_capabilities.py' 2026-01-07T20:25:13,045 adding 'lobster/config/agent_config.py' 2026-01-07T20:25:13,047 adding 'lobster/config/agent_registry.py' 2026-01-07T20:25:13,048 adding 'lobster/config/base_config.py' 2026-01-07T20:25:13,050 adding 'lobster/config/config_manager.py' 2026-01-07T20:25:13,051 adding 'lobster/config/constants.py' 2026-01-07T20:25:13,053 adding 'lobster/config/global_config.py' 2026-01-07T20:25:13,054 adding 'lobster/config/llm_factory.py' 2026-01-07T20:25:13,056 adding 'lobster/config/model_service.py' 2026-01-07T20:25:13,058 adding 'lobster/config/ollama_service.py' 2026-01-07T20:25:13,059 adding 'lobster/config/provider_setup.py' 2026-01-07T20:25:13,061 adding 'lobster/config/settings.py' 2026-01-07T20:25:13,063 adding 'lobster/config/subscription_tiers.py' 2026-01-07T20:25:13,064 adding 'lobster/config/supervisor_config.py' 2026-01-07T20:25:13,066 adding 'lobster/config/workspace_config.py' 2026-01-07T20:25:13,068 adding 'lobster/config/providers/__init__.py' 2026-01-07T20:25:13,070 adding 'lobster/config/providers/anthropic_provider.py' 2026-01-07T20:25:13,071 adding 'lobster/config/providers/base_provider.py' 2026-01-07T20:25:13,073 adding 'lobster/config/providers/bedrock_provider.py' 2026-01-07T20:25:13,075 adding 'lobster/config/providers/gemini_provider.py' 2026-01-07T20:25:13,078 adding 'lobster/config/providers/ollama_provider.py' 2026-01-07T20:25:13,079 adding 'lobster/config/providers/registry.py' 2026-01-07T20:25:13,082 adding 'lobster/core/__init__.py' 2026-01-07T20:25:13,084 adding 'lobster/core/analysis_ir.py' 2026-01-07T20:25:13,087 adding 'lobster/core/archive_utils.py' 2026-01-07T20:25:13,096 adding 'lobster/core/client.py' 2026-01-07T20:25:13,098 adding 'lobster/core/component_registry.py' 2026-01-07T20:25:13,101 adding 'lobster/core/config_resolver.py' 2026-01-07T20:25:13,114 adding 'lobster/core/data_manager_v2.py' 2026-01-07T20:25:13,116 adding 'lobster/core/download_queue.py' 2026-01-07T20:25:13,118 adding 'lobster/core/exceptions.py' 2026-01-07T20:25:13,120 adding 'lobster/core/ir_coverage.py' 2026-01-07T20:25:13,123 adding 'lobster/core/license_manager.py' 2026-01-07T20:25:13,126 adding 'lobster/core/notebook_executor.py' 2026-01-07T20:25:13,129 adding 'lobster/core/notebook_exporter.py' 2026-01-07T20:25:13,131 adding 'lobster/core/notebook_validator.py' 2026-01-07T20:25:13,134 adding 'lobster/core/plot_manager.py' 2026-01-07T20:25:13,136 adding 'lobster/core/plugin_loader.py' 2026-01-07T20:25:13,138 adding 'lobster/core/provenance.py' 2026-01-07T20:25:13,141 adding 'lobster/core/publication_queue.py' 2026-01-07T20:25:13,142 adding 'lobster/core/queue_storage.py' 2026-01-07T20:25:13,145 adding 'lobster/core/ris_parser.py' 2026-01-07T20:25:13,146 adding 'lobster/core/workspace.py' 2026-01-07T20:25:13,148 adding 'lobster/core/adapters/__init__.py' 2026-01-07T20:25:13,150 adding 'lobster/core/adapters/base.py' 2026-01-07T20:25:13,153 adding 'lobster/core/adapters/protein_structure_adapter.py' 2026-01-07T20:25:13,156 adding 'lobster/core/adapters/proteomics_adapter.py' 2026-01-07T20:25:13,159 adding 'lobster/core/adapters/pseudobulk_adapter.py' 2026-01-07T20:25:13,162 adding 'lobster/core/adapters/transcriptomics_adapter.py' 2026-01-07T20:25:13,164 adding 'lobster/core/backends/__init__.py' 2026-01-07T20:25:13,166 adding 'lobster/core/backends/base.py' 2026-01-07T20:25:13,170 adding 'lobster/core/backends/h5ad_backend.py' 2026-01-07T20:25:13,172 adding 'lobster/core/backends/mudata_backend.py' 2026-01-07T20:25:13,175 adding 'lobster/core/identifiers/__init__.py' 2026-01-07T20:25:13,177 adding 'lobster/core/identifiers/accession_resolver.py' 2026-01-07T20:25:13,179 adding 'lobster/core/interfaces/__init__.py' 2026-01-07T20:25:13,181 adding 'lobster/core/interfaces/adapter.py' 2026-01-07T20:25:13,183 adding 'lobster/core/interfaces/backend.py' 2026-01-07T20:25:13,184 adding 'lobster/core/interfaces/base_client.py' 2026-01-07T20:25:13,187 adding 'lobster/core/interfaces/download_service.py' 2026-01-07T20:25:13,189 adding 'lobster/core/interfaces/validator.py' 2026-01-07T20:25:13,191 adding 'lobster/core/schemas/__init__.py' 2026-01-07T20:25:13,194 adding 'lobster/core/schemas/database_mappings.py' 2026-01-07T20:25:13,196 adding 'lobster/core/schemas/database_registry.py' 2026-01-07T20:25:13,198 adding 'lobster/core/schemas/download_queue.py' 2026-01-07T20:25:13,201 adding 'lobster/core/schemas/download_urls.py' 2026-01-07T20:25:13,206 adding 'lobster/core/schemas/export_schemas.py' 2026-01-07T20:25:13,210 adding 'lobster/core/schemas/metabolomics.py' 2026-01-07T20:25:13,216 adding 'lobster/core/schemas/metagenomics.py' 2026-01-07T20:25:13,219 adding 'lobster/core/schemas/protein_structure.py' 2026-01-07T20:25:13,222 adding 'lobster/core/schemas/proteomics.py' 2026-01-07T20:25:13,225 adding 'lobster/core/schemas/publication_queue.py' 2026-01-07T20:25:13,230 adding 'lobster/core/schemas/sra.py' 2026-01-07T20:25:13,237 adding 'lobster/core/schemas/transcriptomics.py' 2026-01-07T20:25:13,240 adding 'lobster/core/schemas/validation.py' 2026-01-07T20:25:13,241 adding 'lobster/core/utils/__init__.py' 2026-01-07T20:25:13,244 adding 'lobster/core/utils/h5ad_utils.py' 2026-01-07T20:25:13,245 adding 'lobster/lobster_cloud/__init__.py' 2026-01-07T20:25:13,247 adding 'lobster/lobster_cloud/client.py' 2026-01-07T20:25:13,249 adding 'lobster/services/__init__.py' 2026-01-07T20:25:13,251 adding 'lobster/services/analysis/__init__.py' 2026-01-07T20:25:13,259 adding 'lobster/services/analysis/bulk_rnaseq_service.py' 2026-01-07T20:25:13,268 adding 'lobster/services/analysis/clustering_service.py' 2026-01-07T20:25:13,272 adding 'lobster/services/analysis/differential_formula_service.py' 2026-01-07T20:25:13,278 adding 'lobster/services/analysis/enhanced_singlecell_service.py' 2026-01-07T20:25:13,282 adding 'lobster/services/analysis/pseudobulk_service.py' 2026-01-07T20:25:13,284 adding 'lobster/services/analysis/scvi_embedding_service.py' 2026-01-07T20:25:13,286 adding 'lobster/services/analysis/structure_analysis_service.py' 2026-01-07T20:25:13,288 adding 'lobster/services/data_access/__init__.py' 2026-01-07T20:25:13,296 adding 'lobster/services/data_access/content_access_service.py' 2026-01-07T20:25:13,302 adding 'lobster/services/data_access/docling_service.py' 2026-01-07T20:25:13,306 adding 'lobster/services/data_access/geo_download_service.py' 2026-01-07T20:25:13,308 adding 'lobster/services/data_access/geo_fallback_service.py' 2026-01-07T20:25:13,332 adding 'lobster/services/data_access/geo_service.py' 2026-01-07T20:25:13,337 adding 'lobster/services/data_access/massive_download_service.py' 2026-01-07T20:25:13,340 adding 'lobster/services/data_access/pride_download_service.py' 2026-01-07T20:25:13,342 adding 'lobster/services/data_access/protein_structure_fetch_service.py' 2026-01-07T20:25:13,347 adding 'lobster/services/data_access/sra_download_service.py' 2026-01-07T20:25:13,352 adding 'lobster/services/data_access/workspace_content_service.py' 2026-01-07T20:25:13,355 adding 'lobster/services/data_access/geo/__init__.py' 2026-01-07T20:25:13,357 adding 'lobster/services/data_access/geo/constants.py' 2026-01-07T20:25:13,361 adding 'lobster/services/data_access/geo/downloader.py' 2026-01-07T20:25:13,363 adding 'lobster/services/data_access/geo/facade.py' 2026-01-07T20:25:13,370 adding 'lobster/services/data_access/geo/parser.py' 2026-01-07T20:25:13,373 adding 'lobster/services/data_access/geo/strategy.py' 2026-01-07T20:25:13,375 adding 'lobster/services/data_access/geo/loaders/__init__.py' 2026-01-07T20:25:13,377 adding 'lobster/services/data_access/geo/loaders/tenx.py' 2026-01-07T20:25:13,379 adding 'lobster/services/data_access/geo/metadata/__init__.py' 2026-01-07T20:25:13,381 adding 'lobster/services/data_access/geo/sample/__init__.py' 2026-01-07T20:25:13,383 adding 'lobster/services/data_access/geo/utils/__init__.py' 2026-01-07T20:25:13,384 adding 'lobster/services/data_management/__init__.py' 2026-01-07T20:25:13,390 adding 'lobster/services/data_management/concatenation_service.py' 2026-01-07T20:25:13,393 adding 'lobster/services/data_management/modality_management_service.py' 2026-01-07T20:25:13,395 adding 'lobster/services/execution/__init__.py' 2026-01-07T20:25:13,400 adding 'lobster/services/execution/custom_code_execution_service.py' 2026-01-07T20:25:13,402 adding 'lobster/services/execution/execution_context_builder.py' 2026-01-07T20:25:13,403 adding 'lobster/services/metadata/__init__.py' 2026-01-07T20:25:13,405 adding 'lobster/services/metadata/identifier_provenance_service.py' 2026-01-07T20:25:13,409 adding 'lobster/services/metadata/manual_annotation_service.py' 2026-01-07T20:25:13,412 adding 'lobster/services/metadata/metadata_standardization_service.py' 2026-01-07T20:25:13,415 adding 'lobster/services/metadata/metadata_validation_service.py' 2026-01-07T20:25:13,418 adding 'lobster/services/metadata/sample_grouping_service.py' 2026-01-07T20:25:13,420 adding 'lobster/services/metadata/protocol_extraction/__init__.py' 2026-01-07T20:25:13,421 adding 'lobster/services/metadata/protocol_extraction/base.py' 2026-01-07T20:25:13,423 adding 'lobster/services/metadata/protocol_extraction/amplicon/__init__.py' 2026-01-07T20:25:13,425 adding 'lobster/services/metadata/protocol_extraction/amplicon/details.py' 2026-01-07T20:25:13,428 adding 'lobster/services/metadata/protocol_extraction/amplicon/service.py' 2026-01-07T20:25:13,430 adding 'lobster/services/metadata/protocol_extraction/amplicon/resources/primers.json' 2026-01-07T20:25:13,432 adding 'lobster/services/metadata/protocol_extraction/mass_spec/__init__.py' 2026-01-07T20:25:13,433 adding 'lobster/services/metadata/protocol_extraction/mass_spec/details.py' 2026-01-07T20:25:13,435 adding 'lobster/services/metadata/protocol_extraction/mass_spec/service.py' 2026-01-07T20:25:13,437 adding 'lobster/services/metadata/protocol_extraction/rnaseq/__init__.py' 2026-01-07T20:25:13,439 adding 'lobster/services/metadata/protocol_extraction/rnaseq/details.py' 2026-01-07T20:25:13,440 adding 'lobster/services/metadata/protocol_extraction/rnaseq/service.py' 2026-01-07T20:25:13,442 adding 'lobster/services/ml/__init__.py' 2026-01-07T20:25:13,444 adding 'lobster/services/orchestration/__init__.py' 2026-01-07T20:25:13,453 adding 'lobster/services/orchestration/publication_processing_service.py' 2026-01-07T20:25:13,455 adding 'lobster/services/quality/__init__.py' 2026-01-07T20:25:13,460 adding 'lobster/services/quality/preprocessing_service.py' 2026-01-07T20:25:13,464 adding 'lobster/services/quality/quality_service.py' 2026-01-07T20:25:13,466 adding 'lobster/services/templates/__init__.py' 2026-01-07T20:25:13,471 adding 'lobster/services/templates/annotation_templates.py' 2026-01-07T20:25:13,473 adding 'lobster/services/visualization/__init__.py' 2026-01-07T20:25:13,475 adding 'lobster/services/visualization/bulk_visualization_service.py' 2026-01-07T20:25:13,479 adding 'lobster/services/visualization/pymol_visualization_service.py' 2026-01-07T20:25:13,487 adding 'lobster/services/visualization/visualization_service.py' 2026-01-07T20:25:13,489 adding 'lobster/tools/__init__.py' 2026-01-07T20:25:13,492 adding 'lobster/tools/custom_code_tool.py' 2026-01-07T20:25:13,494 adding 'lobster/tools/download_orchestrator.py' 2026-01-07T20:25:13,497 adding 'lobster/tools/enhanced_handoff_tool.py' 2026-01-07T20:25:13,499 adding 'lobster/tools/expert_handoff_manager.py' 2026-01-07T20:25:13,501 adding 'lobster/tools/expert_handoff_patterns.py' 2026-01-07T20:25:13,502 adding 'lobster/tools/geo_downloader.py' 2026-01-07T20:25:13,504 adding 'lobster/tools/geo_parser.py' 2026-01-07T20:25:13,505 adding 'lobster/tools/gpu_detector.py' 2026-01-07T20:25:13,507 adding 'lobster/tools/handoff_tool.py' 2026-01-07T20:25:13,508 adding 'lobster/tools/pipeline_strategy.py' 2026-01-07T20:25:13,512 adding 'lobster/tools/rate_limiter.py' 2026-01-07T20:25:13,514 adding 'lobster/tools/todo_tools.py' 2026-01-07T20:25:13,516 adding 'lobster/tools/url_transforms.py' 2026-01-07T20:25:13,519 adding 'lobster/tools/workflow_tracker.py' 2026-01-07T20:25:13,531 adding 'lobster/tools/workspace_tool.py' 2026-01-07T20:25:13,535 adding 'lobster/tools/archive/publication_service.py' 2026-01-07T20:25:13,538 adding 'lobster/tools/archive/unified_content_service.py' 2026-01-07T20:25:13,540 adding 'lobster/tools/providers/__init__.py' 2026-01-07T20:25:13,542 adding 'lobster/tools/providers/abstract_provider.py' 2026-01-07T20:25:13,544 adding 'lobster/tools/providers/base_provider.py' 2026-01-07T20:25:13,547 adding 'lobster/tools/providers/biopython_entrez_wrapper.py' 2026-01-07T20:25:13,549 adding 'lobster/tools/providers/biorxiv_medrxiv_config.py' 2026-01-07T20:25:13,554 adding 'lobster/tools/providers/biorxiv_medrxiv_provider.py' 2026-01-07T20:25:13,560 adding 'lobster/tools/providers/geo_provider.py' 2026-01-07T20:25:13,562 adding 'lobster/tools/providers/geo_utils.py' 2026-01-07T20:25:13,564 adding 'lobster/tools/providers/massive_provider.py' 2026-01-07T20:25:13,567 adding 'lobster/tools/providers/ncbi_query_builder.py' 2026-01-07T20:25:13,569 adding 'lobster/tools/providers/organism_enum.py' 2026-01-07T20:25:13,571 adding 'lobster/tools/providers/pdb_provider.py' 2026-01-07T20:25:13,578 adding 'lobster/tools/providers/pmc_provider.py' 2026-01-07T20:25:13,581 adding 'lobster/tools/providers/pride_normalizer.py' 2026-01-07T20:25:13,584 adding 'lobster/tools/providers/pride_provider.py' 2026-01-07T20:25:13,586 adding 'lobster/tools/providers/provider_registry.py' 2026-01-07T20:25:13,589 adding 'lobster/tools/providers/publication_resolver.py' 2026-01-07T20:25:13,598 adding 'lobster/tools/providers/pubmed_provider.py' 2026-01-07T20:25:13,605 adding 'lobster/tools/providers/sra_provider.py' 2026-01-07T20:25:13,607 adding 'lobster/tools/providers/structure_provider.py' 2026-01-07T20:25:13,609 adding 'lobster/tools/providers/webpage_provider.py' 2026-01-07T20:25:13,611 adding 'lobster/ui/__init__.py' 2026-01-07T20:25:13,613 adding 'lobster/ui/commands.py' 2026-01-07T20:25:13,616 adding 'lobster/ui/console_manager.py' 2026-01-07T20:25:13,618 adding 'lobster/ui/live_dashboard.py' 2026-01-07T20:25:13,620 adding 'lobster/ui/os_app.py' 2026-01-07T20:25:13,622 adding 'lobster/ui/progress_manager.py' 2026-01-07T20:25:13,624 adding 'lobster/ui/themes.py' 2026-01-07T20:25:13,626 adding 'lobster/ui/callbacks/__init__.py' 2026-01-07T20:25:13,629 adding 'lobster/ui/callbacks/textual_callback.py' 2026-01-07T20:25:13,631 adding 'lobster/ui/components/__init__.py' 2026-01-07T20:25:13,633 adding 'lobster/ui/components/file_tree.py' 2026-01-07T20:25:13,635 adding 'lobster/ui/components/multi_progress.py' 2026-01-07T20:25:13,637 adding 'lobster/ui/components/parallel_workers_progress.py' 2026-01-07T20:25:13,640 adding 'lobster/ui/components/status_display.py' 2026-01-07T20:25:13,642 adding 'lobster/ui/formatters/__init__.py' 2026-01-07T20:25:13,644 adding 'lobster/ui/screens/__init__.py' 2026-01-07T20:25:13,647 adding 'lobster/ui/screens/analysis_screen.py' 2026-01-07T20:25:13,649 adding 'lobster/ui/services/__init__.py' 2026-01-07T20:25:13,651 adding 'lobster/ui/services/error_service.py' 2026-01-07T20:25:13,653 adding 'lobster/ui/widgets/__init__.py' 2026-01-07T20:25:13,655 adding 'lobster/ui/widgets/activity_log.py' 2026-01-07T20:25:13,656 adding 'lobster/ui/widgets/adapters_panel.py' 2026-01-07T20:25:13,658 adding 'lobster/ui/widgets/agents_panel.py' 2026-01-07T20:25:13,659 adding 'lobster/ui/widgets/chat_message.py' 2026-01-07T20:25:13,661 adding 'lobster/ui/widgets/connections_panel.py' 2026-01-07T20:25:13,664 adding 'lobster/ui/widgets/data_hub.py' 2026-01-07T20:25:13,666 adding 'lobster/ui/widgets/error_modal.py' 2026-01-07T20:25:13,667 adding 'lobster/ui/widgets/modality_list.py' 2026-01-07T20:25:13,669 adding 'lobster/ui/widgets/plot_preview.py' 2026-01-07T20:25:13,670 adding 'lobster/ui/widgets/query_prompt.py' 2026-01-07T20:25:13,672 adding 'lobster/ui/widgets/queue_panel.py' 2026-01-07T20:25:13,674 adding 'lobster/ui/widgets/queue_status_bar.py' 2026-01-07T20:25:13,675 adding 'lobster/ui/widgets/results_display.py' 2026-01-07T20:25:13,677 adding 'lobster/ui/widgets/status_bar.py' 2026-01-07T20:25:13,678 adding 'lobster/ui/widgets/system_info.py' 2026-01-07T20:25:13,680 adding 'lobster/ui/widgets/token_usage_panel.py' 2026-01-07T20:25:13,682 adding 'lobster/utils/__init__.py' 2026-01-07T20:25:13,687 adding 'lobster/utils/callbacks.py' 2026-01-07T20:25:13,689 adding 'lobster/utils/deviance.py' 2026-01-07T20:25:13,692 adding 'lobster/utils/error_handlers.py' 2026-01-07T20:25:13,694 adding 'lobster/utils/file_analyzer.py' 2026-01-07T20:25:13,696 adding 'lobster/utils/file_naming.py' 2026-01-07T20:25:13,698 adding 'lobster/utils/json_extractor.py' 2026-01-07T20:25:13,699 adding 'lobster/utils/logger.py' 2026-01-07T20:25:13,701 adding 'lobster/utils/progress_wrapper.py' 2026-01-07T20:25:13,702 adding 'lobster/utils/ssl_utils.py' 2026-01-07T20:25:13,704 adding 'lobster/utils/system.py' 2026-01-07T20:25:13,711 adding 'lobster_ai-0.4.1.5.dist-info/licenses/LICENSE' 2026-01-07T20:25:13,714 adding 'lobster_ai-0.4.1.5.dist-info/METADATA' 2026-01-07T20:25:13,715 adding 'lobster_ai-0.4.1.5.dist-info/WHEEL' 2026-01-07T20:25:13,716 adding 'lobster_ai-0.4.1.5.dist-info/entry_points.txt' 2026-01-07T20:25:13,717 adding 'lobster_ai-0.4.1.5.dist-info/top_level.txt' 2026-01-07T20:25:13,721 adding 'lobster_ai-0.4.1.5.dist-info/RECORD' 2026-01-07T20:25:13,740 removing build/bdist.linux-armv7l/wheel 2026-01-07T20:25:13,917 Building wheel for lobster-ai (pyproject.toml): finished with status 'done' 2026-01-07T20:25:13,946 Created wheel for lobster-ai: filename=lobster_ai-0.4.1.5-py3-none-any.whl size=1348433 sha256=64ab95e8749771e60d7b6869152cd847cc2fbcd49dcfa6325db68e7defad357b 2026-01-07T20:25:13,948 Stored in directory: /tmp/pip-ephem-wheel-cache-_7qo4x9x/wheels/5a/b0/ed/37a39234c14e03b8caf46753bf9c00ceb098d369144f718b5e 2026-01-07T20:25:13,973 Successfully built lobster-ai 2026-01-07T20:25:14,022 Removed build tracker: '/tmp/pip-build-tracker-t8u5god_'