2026-01-07T20:31:09,809 Created temporary directory: /tmp/pip-ephem-wheel-cache-y_e8t80o
2026-01-07T20:31:09,811 Created temporary directory: /tmp/pip-build-tracker-xxqwxjdt
2026-01-07T20:31:09,811 Initialized build tracking at /tmp/pip-build-tracker-xxqwxjdt
2026-01-07T20:31:09,812 Created build tracker: /tmp/pip-build-tracker-xxqwxjdt
2026-01-07T20:31:09,812 Entered build tracker: /tmp/pip-build-tracker-xxqwxjdt
2026-01-07T20:31:09,813 Created temporary directory: /tmp/pip-wheel-oe7sn3ku
2026-01-07T20:31:09,816 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-01-07T20:31:09,819 Created temporary directory: /tmp/pip-ephem-wheel-cache-9q3irs9p
2026-01-07T20:31:09,840 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-01-07T20:31:09,844 2 location(s) to search for versions of lobster-ai:
2026-01-07T20:31:09,844 * https://pypi.org/simple/lobster-ai/
2026-01-07T20:31:09,844 * https://www.piwheels.org/simple/lobster-ai/
2026-01-07T20:31:09,845 Fetching project page and analyzing links: https://pypi.org/simple/lobster-ai/
2026-01-07T20:31:09,845 Getting page https://pypi.org/simple/lobster-ai/
2026-01-07T20:31:09,847 Found index url https://pypi.org/simple
2026-01-07T20:31:10,063 Fetched page https://pypi.org/simple/lobster-ai/ as application/vnd.pypi.simple.v1+json
2026-01-07T20:31:10,067   Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/25/73/1d1a25243200fd27fb678fc6ba25c4f1675657400551cb051e2f0ba608ec/lobster_ai-0.4.0.6-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11)
2026-01-07T20:31:10,068   Found link https://files.pythonhosted.org/packages/70/bb/d1a5b8fb3972b827f824ed05220013d162bbec24be0d8bffe790e535960b/lobster_ai-0.4.0.6.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.0.6
2026-01-07T20:31:10,069   Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/28/50/4706e55b526417192c7d0734f9300f26cbaa6f3404a258dc5e23932755d8/lobster_ai-0.4.0.7-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11)
2026-01-07T20:31:10,070   Found link https://files.pythonhosted.org/packages/a8/80/ed27ba2c77f7614bf149a697b450c4828da9d56fe5c8d3f0090165bf76fc/lobster_ai-0.4.0.7.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.0.7
2026-01-07T20:31:10,071   Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/d6/d8/90aa06db1b87347873b4ce21d57d45a24c7c9a7f357128242401dacf90ee/lobster_ai-0.4.0.8-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11)
2026-01-07T20:31:10,072   Found link https://files.pythonhosted.org/packages/69/86/8a4b462df9a8118f3de7e0685672bda6cb876c8345b4434923a5c5e941ff/lobster_ai-0.4.0.8.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.0.8
2026-01-07T20:31:10,073   Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/82/31/78340295ff44b67ccc4c5caaa6719063d7474604cd61fa9262fc35d4d956/lobster_ai-0.4.0.9-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11)
2026-01-07T20:31:10,074   Found link https://files.pythonhosted.org/packages/6f/e1/d7ec868a638125f79b3f450e1ecb1b9e75ed7ba1887b51849531a4b362dc/lobster_ai-0.4.0.9.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.0.9
2026-01-07T20:31:10,074   Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/34/e3/df793c9c964fd14f0e798a2b126653fe41689d96f69c0f667eaeaec3b87e/lobster_ai-0.4.1.1-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11)
2026-01-07T20:31:10,075   Found link https://files.pythonhosted.org/packages/3d/08/0884cc34aeec5b95e5d0b58f69dd05ff17ff21a3abfe6a24180066dd8bff/lobster_ai-0.4.1.1.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.1.1
2026-01-07T20:31:10,076   Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/dc/16/d16ef722f81cf4491dc14a10a7e1bd220f6e015f7096c449f0b46953eef3/lobster_ai-0.4.1.2-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11)
2026-01-07T20:31:10,077   Found link https://files.pythonhosted.org/packages/26/99/4ba848c11cfd7e2ce9603618c1752cd9a0b6efb80e10057f29cc5f8bcd99/lobster_ai-0.4.1.2.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.1.2
2026-01-07T20:31:10,078   Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/c7/1e/4907d9395f6cd0423f68ae362692a305f1667f39cbb14748e2445198c84c/lobster_ai-0.4.1.3-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11)
2026-01-07T20:31:10,079   Found link https://files.pythonhosted.org/packages/bf/27/ee3a39812b4ef948a1c918a961b3226551f295303cc9ba81958d83917238/lobster_ai-0.4.1.3.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.1.3
2026-01-07T20:31:10,079   Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/bf/b4/ac38db54d1442ddba719f431bb2b6a2396b696617b6701cb8326dc81b8f6/lobster_ai-0.4.1.4-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11)
2026-01-07T20:31:10,080   Found link https://files.pythonhosted.org/packages/25/76/dd6e0450e6ba1cae1eeb0956576d5d07bd08b40d7005b9c768b756af7484/lobster_ai-0.4.1.4.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.1.4
2026-01-07T20:31:10,081   Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/fa/c6/d61c31b8779125e2a9cfbffc20fcdb7c3790c8bf64ecb3c74a9571cf1b9a/lobster_ai-0.4.1.5-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11)
2026-01-07T20:31:10,082   Found link https://files.pythonhosted.org/packages/e1/fb/4535dc1c984840956291d1d24e03b91a321639f5a209aa1529becd12d0af/lobster_ai-0.4.1.5.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.1.5
2026-01-07T20:31:10,082   Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/ca/97/988cbb274eec6f1beb4865d431331d0881a1bff32e9c973b18331edd98ff/lobster_ai-0.4.1.6-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11)
2026-01-07T20:31:10,083   Found link https://files.pythonhosted.org/packages/42/de/54943a601e8ecc810ab58b7d5a37b5bac1c4f3670d3ebd4004961ef0d28d/lobster_ai-0.4.1.6.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.1.6
2026-01-07T20:31:10,084 Fetching project page and analyzing links: https://www.piwheels.org/simple/lobster-ai/
2026-01-07T20:31:10,085 Getting page https://www.piwheels.org/simple/lobster-ai/
2026-01-07T20:31:10,086 Found index url https://www.piwheels.org/simple
2026-01-07T20:31:10,240 Fetched page https://www.piwheels.org/simple/lobster-ai/ as text/html
2026-01-07T20:31:10,244   Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.1.5-py3-none-any.whl#sha256=64ab95e8749771e60d7b6869152cd847cc2fbcd49dcfa6325db68e7defad357b (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11)
2026-01-07T20:31:10,245   Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.1.4-py3-none-any.whl#sha256=a999a8b38fc5a8e803c713c25ea79bab7d44829ec37405cad04b6f2c9a7b3667 (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11)
2026-01-07T20:31:10,245   Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.1.3-py3-none-any.whl#sha256=80e2e1901c9acbae8f29a51305af7fc23762871021f86168660c0098154ea64d (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11)
2026-01-07T20:31:10,246   Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.1.2-py3-none-any.whl#sha256=7f38e7703c88c0c7fe4811c9c7b04da6469ca264d3e261e794b0a59376ba4d0e (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11)
2026-01-07T20:31:10,247   Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.1.1-py3-none-any.whl#sha256=d30d1083ded2235ea62f728b72c55b58d61c4164f9913d1996d68c451dac3c4d (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11)
2026-01-07T20:31:10,247   Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.0.9-py3-none-any.whl#sha256=48a46075806c2941d705fa7eb0da81c1c162cc4b62b1bc22b578315363b4de75 (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11)
2026-01-07T20:31:10,248   Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.0.8-py3-none-any.whl#sha256=a66d81b7558824d17ab891c3a592ceb8ee53492f413d9cfdd89bdecd8fd1de85 (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11)
2026-01-07T20:31:10,248   Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.0.7-py3-none-any.whl#sha256=cbee755d3f7ac5e1cd5b65bfe0309faa4acba90c1a6a1b32036010c45f0868d9 (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11)
2026-01-07T20:31:10,249   Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.0.6-py3-none-any.whl#sha256=2d937b84c8a017772656d9ca05d13ea77671ba5c8b1eccb92e4129465a975502 (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11)
2026-01-07T20:31:10,249 Skipping link: not a file: https://www.piwheels.org/simple/lobster-ai/
2026-01-07T20:31:10,250 Skipping link: not a file: https://pypi.org/simple/lobster-ai/
2026-01-07T20:31:10,270 Given no hashes to check 1 links for project 'lobster-ai': discarding no candidates
2026-01-07T20:31:10,288 Collecting lobster-ai==0.4.1.6
2026-01-07T20:31:10,291   Created temporary directory: /tmp/pip-unpack-13uhqk2f
2026-01-07T20:31:10,515   Downloading lobster_ai-0.4.1.6.tar.gz (1.2 MB)
2026-01-07T20:31:11,923   Added lobster-ai==0.4.1.6 from https://files.pythonhosted.org/packages/42/de/54943a601e8ecc810ab58b7d5a37b5bac1c4f3670d3ebd4004961ef0d28d/lobster_ai-0.4.1.6.tar.gz to build tracker '/tmp/pip-build-tracker-xxqwxjdt'
2026-01-07T20:31:11,932   Created temporary directory: /tmp/pip-build-env-skaig3id
2026-01-07T20:31:11,936   Installing build dependencies: started
2026-01-07T20:31:11,938   Running command pip subprocess to install build dependencies
2026-01-07T20:31:13,084   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-01-07T20:31:13,752   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-01-07T20:31:13,777   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-01-07T20:31:15,500   Collecting setuptools>=65.0
2026-01-07T20:31:15,692     Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB)
2026-01-07T20:31:15,968   Collecting wheel
2026-01-07T20:31:15,984     Using cached https://www.piwheels.org/simple/wheel/wheel-0.45.1-py3-none-any.whl (72 kB)
2026-01-07T20:31:19,036   Installing collected packages: wheel, setuptools
2026-01-07T20:31:19,502     Creating /tmp/pip-build-env-skaig3id/overlay/local/bin
2026-01-07T20:31:19,505     changing mode of /tmp/pip-build-env-skaig3id/overlay/local/bin/wheel to 755
2026-01-07T20:31:23,403   Successfully installed setuptools-80.9.0 wheel-0.45.1
2026-01-07T20:31:23,678   Installing build dependencies: finished with status 'done'
2026-01-07T20:31:23,685   Getting requirements to build wheel: started
2026-01-07T20:31:23,686   Running command Getting requirements to build wheel
2026-01-07T20:31:24,369   /tmp/pip-build-env-skaig3id/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `license` overwritten by `pyproject.toml`
2026-01-07T20:31:24,370     corresp(dist, value, root_dir)
2026-01-07T20:31:24,370   /tmp/pip-build-env-skaig3id/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies)
2026-01-07T20:31:24,371     corresp(dist, value, root_dir)
2026-01-07T20:31:24,371   /tmp/pip-build-env-skaig3id/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `extras_require` overwritten in `pyproject.toml` (optional-dependencies)
2026-01-07T20:31:24,372     corresp(dist, value, root_dir)
2026-01-07T20:31:24,481   running egg_info
2026-01-07T20:31:24,488   writing lobster_ai.egg-info/PKG-INFO
2026-01-07T20:31:24,518   writing dependency_links to lobster_ai.egg-info/dependency_links.txt
2026-01-07T20:31:24,520   writing entry points to lobster_ai.egg-info/entry_points.txt
2026-01-07T20:31:24,540   writing requirements to lobster_ai.egg-info/requires.txt
2026-01-07T20:31:24,541   writing top-level names to lobster_ai.egg-info/top_level.txt
2026-01-07T20:31:24,696   reading manifest file 'lobster_ai.egg-info/SOURCES.txt'
2026-01-07T20:31:24,713   adding license file 'LICENSE'
2026-01-07T20:31:24,727   writing manifest file 'lobster_ai.egg-info/SOURCES.txt'
2026-01-07T20:31:24,828   Getting requirements to build wheel: finished with status 'done'
2026-01-07T20:31:24,831   Created temporary directory: /tmp/pip-modern-metadata-kk34s63a
2026-01-07T20:31:24,834   Preparing metadata (pyproject.toml): started
2026-01-07T20:31:24,835   Running command Preparing metadata (pyproject.toml)
2026-01-07T20:31:25,467   /tmp/pip-build-env-skaig3id/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `license` overwritten by `pyproject.toml`
2026-01-07T20:31:25,467     corresp(dist, value, root_dir)
2026-01-07T20:31:25,468   /tmp/pip-build-env-skaig3id/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies)
2026-01-07T20:31:25,469     corresp(dist, value, root_dir)
2026-01-07T20:31:25,469   /tmp/pip-build-env-skaig3id/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `extras_require` overwritten in `pyproject.toml` (optional-dependencies)
2026-01-07T20:31:25,470     corresp(dist, value, root_dir)
2026-01-07T20:31:25,574   running dist_info
2026-01-07T20:31:25,586   creating /tmp/pip-modern-metadata-kk34s63a/lobster_ai.egg-info
2026-01-07T20:31:25,588   writing /tmp/pip-modern-metadata-kk34s63a/lobster_ai.egg-info/PKG-INFO
2026-01-07T20:31:25,621   writing dependency_links to /tmp/pip-modern-metadata-kk34s63a/lobster_ai.egg-info/dependency_links.txt
2026-01-07T20:31:25,623   writing entry points to /tmp/pip-modern-metadata-kk34s63a/lobster_ai.egg-info/entry_points.txt
2026-01-07T20:31:25,642   writing requirements to /tmp/pip-modern-metadata-kk34s63a/lobster_ai.egg-info/requires.txt
2026-01-07T20:31:25,643   writing top-level names to /tmp/pip-modern-metadata-kk34s63a/lobster_ai.egg-info/top_level.txt
2026-01-07T20:31:25,645   writing manifest file '/tmp/pip-modern-metadata-kk34s63a/lobster_ai.egg-info/SOURCES.txt'
2026-01-07T20:31:25,781   reading manifest file '/tmp/pip-modern-metadata-kk34s63a/lobster_ai.egg-info/SOURCES.txt'
2026-01-07T20:31:25,783   adding license file 'LICENSE'
2026-01-07T20:31:25,794   writing manifest file '/tmp/pip-modern-metadata-kk34s63a/lobster_ai.egg-info/SOURCES.txt'
2026-01-07T20:31:25,795   creating '/tmp/pip-modern-metadata-kk34s63a/lobster_ai-0.4.1.6.dist-info'
2026-01-07T20:31:25,933   Preparing metadata (pyproject.toml): finished with status 'done'
2026-01-07T20:31:25,940   Source in /tmp/pip-wheel-oe7sn3ku/lobster-ai_509e6cdfd1c845f081794a3b9125dac1 has version 0.4.1.6, which satisfies requirement lobster-ai==0.4.1.6 from https://files.pythonhosted.org/packages/42/de/54943a601e8ecc810ab58b7d5a37b5bac1c4f3670d3ebd4004961ef0d28d/lobster_ai-0.4.1.6.tar.gz
2026-01-07T20:31:25,941   Removed lobster-ai==0.4.1.6 from https://files.pythonhosted.org/packages/42/de/54943a601e8ecc810ab58b7d5a37b5bac1c4f3670d3ebd4004961ef0d28d/lobster_ai-0.4.1.6.tar.gz from build tracker '/tmp/pip-build-tracker-xxqwxjdt'
2026-01-07T20:31:25,951 Created temporary directory: /tmp/pip-unpack-bhml_2pv
2026-01-07T20:31:25,952 Building wheels for collected packages: lobster-ai
2026-01-07T20:31:25,957   Created temporary directory: /tmp/pip-wheel-g5iy9ykr
2026-01-07T20:31:25,957   Destination directory: /tmp/pip-wheel-g5iy9ykr
2026-01-07T20:31:25,960   Building wheel for lobster-ai (pyproject.toml): started
2026-01-07T20:31:25,961   Running command Building wheel for lobster-ai (pyproject.toml)
2026-01-07T20:31:26,811   /tmp/pip-build-env-skaig3id/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `license` overwritten by `pyproject.toml`
2026-01-07T20:31:26,811     corresp(dist, value, root_dir)
2026-01-07T20:31:26,811   /tmp/pip-build-env-skaig3id/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies)
2026-01-07T20:31:26,812     corresp(dist, value, root_dir)
2026-01-07T20:31:26,813   /tmp/pip-build-env-skaig3id/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `extras_require` overwritten in `pyproject.toml` (optional-dependencies)
2026-01-07T20:31:26,813     corresp(dist, value, root_dir)
2026-01-07T20:31:26,904   running bdist_wheel
2026-01-07T20:31:26,925   running build
2026-01-07T20:31:26,926   running build_py
2026-01-07T20:31:26,932   creating build/lib/lobster
2026-01-07T20:31:26,935   copying lobster/__main__.py -> build/lib/lobster
2026-01-07T20:31:26,937   copying lobster/main.py -> build/lib/lobster
2026-01-07T20:31:26,939   copying lobster/_version.py -> build/lib/lobster
2026-01-07T20:31:26,941   copying lobster/version.py -> build/lib/lobster
2026-01-07T20:31:26,942   copying lobster/cli.py -> build/lib/lobster
2026-01-07T20:31:26,953   creating build/lib/lobster/config
2026-01-07T20:31:26,954   copying lobster/config/settings.py -> build/lib/lobster/config
2026-01-07T20:31:26,956   copying lobster/config/subscription_tiers.py -> build/lib/lobster/config
2026-01-07T20:31:26,959   copying lobster/config/__init__.py -> build/lib/lobster/config
2026-01-07T20:31:26,961   copying lobster/config/provider_setup.py -> build/lib/lobster/config
2026-01-07T20:31:26,963   copying lobster/config/agent_config.py -> build/lib/lobster/config
2026-01-07T20:31:26,966   copying lobster/config/constants.py -> build/lib/lobster/config
2026-01-07T20:31:26,968   copying lobster/config/agent_registry.py -> build/lib/lobster/config
2026-01-07T20:31:26,970   copying lobster/config/ollama_service.py -> build/lib/lobster/config
2026-01-07T20:31:26,973   copying lobster/config/config_manager.py -> build/lib/lobster/config
2026-01-07T20:31:26,975   copying lobster/config/global_config.py -> build/lib/lobster/config
2026-01-07T20:31:26,978   copying lobster/config/workspace_config.py -> build/lib/lobster/config
2026-01-07T20:31:26,980   copying lobster/config/agent_capabilities.py -> build/lib/lobster/config
2026-01-07T20:31:26,982   copying lobster/config/supervisor_config.py -> build/lib/lobster/config
2026-01-07T20:31:26,985   copying lobster/config/model_service.py -> build/lib/lobster/config
2026-01-07T20:31:26,987   copying lobster/config/base_config.py -> build/lib/lobster/config
2026-01-07T20:31:26,989   copying lobster/config/llm_factory.py -> build/lib/lobster/config
2026-01-07T20:31:26,992   creating build/lib/lobster/utils
2026-01-07T20:31:26,993   copying lobster/utils/ssl_utils.py -> build/lib/lobster/utils
2026-01-07T20:31:26,995   copying lobster/utils/file_naming.py -> build/lib/lobster/utils
2026-01-07T20:31:26,998   copying lobster/utils/__init__.py -> build/lib/lobster/utils
2026-01-07T20:31:26,999   copying lobster/utils/error_handlers.py -> build/lib/lobster/utils
2026-01-07T20:31:27,002   copying lobster/utils/progress_wrapper.py -> build/lib/lobster/utils
2026-01-07T20:31:27,004   copying lobster/utils/deviance.py -> build/lib/lobster/utils
2026-01-07T20:31:27,006   copying lobster/utils/system.py -> build/lib/lobster/utils
2026-01-07T20:31:27,008   copying lobster/utils/logger.py -> build/lib/lobster/utils
2026-01-07T20:31:27,010   copying lobster/utils/json_extractor.py -> build/lib/lobster/utils
2026-01-07T20:31:27,012   copying lobster/utils/callbacks.py -> build/lib/lobster/utils
2026-01-07T20:31:27,015   copying lobster/utils/file_analyzer.py -> build/lib/lobster/utils
2026-01-07T20:31:27,018   creating build/lib/lobster/core
2026-01-07T20:31:27,019   copying lobster/core/component_registry.py -> build/lib/lobster/core
2026-01-07T20:31:27,022   copying lobster/core/exceptions.py -> build/lib/lobster/core
2026-01-07T20:31:27,024   copying lobster/core/notebook_exporter.py -> build/lib/lobster/core
2026-01-07T20:31:27,027   copying lobster/core/data_manager_v2.py -> build/lib/lobster/core
2026-01-07T20:31:27,032   copying lobster/core/ris_parser.py -> build/lib/lobster/core
2026-01-07T20:31:27,034   copying lobster/core/__init__.py -> build/lib/lobster/core
2026-01-07T20:31:27,036   copying lobster/core/provenance.py -> build/lib/lobster/core
2026-01-07T20:31:27,039   copying lobster/core/publication_queue.py -> build/lib/lobster/core
2026-01-07T20:31:27,041   copying lobster/core/workspace.py -> build/lib/lobster/core
2026-01-07T20:31:27,043   copying lobster/core/download_queue.py -> build/lib/lobster/core
2026-01-07T20:31:27,045   copying lobster/core/config_resolver.py -> build/lib/lobster/core
2026-01-07T20:31:27,048   copying lobster/core/notebook_executor.py -> build/lib/lobster/core
2026-01-07T20:31:27,050   copying lobster/core/plugin_loader.py -> build/lib/lobster/core
2026-01-07T20:31:27,052   copying lobster/core/client.py -> build/lib/lobster/core
2026-01-07T20:31:27,057   copying lobster/core/archive_utils.py -> build/lib/lobster/core
2026-01-07T20:31:27,059   copying lobster/core/plot_manager.py -> build/lib/lobster/core
2026-01-07T20:31:27,062   copying lobster/core/license_manager.py -> build/lib/lobster/core
2026-01-07T20:31:27,065   copying lobster/core/queue_storage.py -> build/lib/lobster/core
2026-01-07T20:31:27,067   copying lobster/core/notebook_validator.py -> build/lib/lobster/core
2026-01-07T20:31:27,070   copying lobster/core/ir_coverage.py -> build/lib/lobster/core
2026-01-07T20:31:27,072   copying lobster/core/analysis_ir.py -> build/lib/lobster/core
2026-01-07T20:31:27,075   creating build/lib/lobster/lobster_cloud
2026-01-07T20:31:27,076   copying lobster/lobster_cloud/__init__.py -> build/lib/lobster/lobster_cloud
2026-01-07T20:31:27,078   copying lobster/lobster_cloud/client.py -> build/lib/lobster/lobster_cloud
2026-01-07T20:31:27,081   creating build/lib/lobster/services
2026-01-07T20:31:27,082   copying lobster/services/__init__.py -> build/lib/lobster/services
2026-01-07T20:31:27,084   creating build/lib/lobster/agents
2026-01-07T20:31:27,085   copying lobster/agents/__init__.py -> build/lib/lobster/agents
2026-01-07T20:31:27,087   copying lobster/agents/data_expert.py -> build/lib/lobster/agents
2026-01-07T20:31:27,091   copying lobster/agents/draw_graph.py -> build/lib/lobster/agents
2026-01-07T20:31:27,093   copying lobster/agents/visualization_expert.py -> build/lib/lobster/agents
2026-01-07T20:31:27,096   copying lobster/agents/data_expert_assistant.py -> build/lib/lobster/agents
2026-01-07T20:31:27,099   copying lobster/agents/supervisor.py -> build/lib/lobster/agents
2026-01-07T20:31:27,103   copying lobster/agents/graph.py -> build/lib/lobster/agents
2026-01-07T20:31:27,105   copying lobster/agents/state.py -> build/lib/lobster/agents
2026-01-07T20:31:27,108   copying lobster/agents/research_agent.py -> build/lib/lobster/agents
2026-01-07T20:31:27,112   creating build/lib/lobster/cli_internal
2026-01-07T20:31:27,113   copying lobster/cli_internal/__init__.py -> build/lib/lobster/cli_internal
2026-01-07T20:31:27,116   creating build/lib/lobster/ui
2026-01-07T20:31:27,117   copying lobster/ui/commands.py -> build/lib/lobster/ui
2026-01-07T20:31:27,119   copying lobster/ui/__init__.py -> build/lib/lobster/ui
2026-01-07T20:31:27,121   copying lobster/ui/live_dashboard.py -> build/lib/lobster/ui
2026-01-07T20:31:27,124   copying lobster/ui/progress_manager.py -> build/lib/lobster/ui
2026-01-07T20:31:27,126   copying lobster/ui/os_app.py -> build/lib/lobster/ui
2026-01-07T20:31:27,128   copying lobster/ui/console_manager.py -> build/lib/lobster/ui
2026-01-07T20:31:27,131   copying lobster/ui/themes.py -> build/lib/lobster/ui
2026-01-07T20:31:27,134   creating build/lib/lobster/tools
2026-01-07T20:31:27,135   copying lobster/tools/geo_downloader.py -> build/lib/lobster/tools
2026-01-07T20:31:27,137   copying lobster/tools/enhanced_handoff_tool.py -> build/lib/lobster/tools
2026-01-07T20:31:27,139   copying lobster/tools/__init__.py -> build/lib/lobster/tools
2026-01-07T20:31:27,141   copying lobster/tools/workspace_tool.py -> build/lib/lobster/tools
2026-01-07T20:31:27,145   copying lobster/tools/pipeline_strategy.py -> build/lib/lobster/tools
2026-01-07T20:31:27,147   copying lobster/tools/handoff_tool.py -> build/lib/lobster/tools
2026-01-07T20:31:27,149   copying lobster/tools/download_orchestrator.py -> build/lib/lobster/tools
2026-01-07T20:31:27,152   copying lobster/tools/geo_parser.py -> build/lib/lobster/tools
2026-01-07T20:31:27,153   copying lobster/tools/gpu_detector.py -> build/lib/lobster/tools
2026-01-07T20:31:27,156   copying lobster/tools/rate_limiter.py -> build/lib/lobster/tools
2026-01-07T20:31:27,159   copying lobster/tools/todo_tools.py -> build/lib/lobster/tools
2026-01-07T20:31:27,161   copying lobster/tools/url_transforms.py -> build/lib/lobster/tools
2026-01-07T20:31:27,163   copying lobster/tools/expert_handoff_patterns.py -> build/lib/lobster/tools
2026-01-07T20:31:27,165   copying lobster/tools/expert_handoff_manager.py -> build/lib/lobster/tools
2026-01-07T20:31:27,168   copying lobster/tools/workflow_tracker.py -> build/lib/lobster/tools
2026-01-07T20:31:27,170   copying lobster/tools/custom_code_tool.py -> build/lib/lobster/tools
2026-01-07T20:31:27,174   creating build/lib/lobster/config/providers
2026-01-07T20:31:27,175   copying lobster/config/providers/base_provider.py -> build/lib/lobster/config/providers
2026-01-07T20:31:27,177   copying lobster/config/providers/gemini_provider.py -> build/lib/lobster/config/providers
2026-01-07T20:31:27,180   copying lobster/config/providers/__init__.py -> build/lib/lobster/config/providers
2026-01-07T20:31:27,182   copying lobster/config/providers/bedrock_provider.py -> build/lib/lobster/config/providers
2026-01-07T20:31:27,184   copying lobster/config/providers/anthropic_provider.py -> build/lib/lobster/config/providers
2026-01-07T20:31:27,187   copying lobster/config/providers/ollama_provider.py -> build/lib/lobster/config/providers
2026-01-07T20:31:27,190   copying lobster/config/providers/registry.py -> build/lib/lobster/config/providers
2026-01-07T20:31:27,193   creating build/lib/lobster/core/interfaces
2026-01-07T20:31:27,194   copying lobster/core/interfaces/__init__.py -> build/lib/lobster/core/interfaces
2026-01-07T20:31:27,196   copying lobster/core/interfaces/adapter.py -> build/lib/lobster/core/interfaces
2026-01-07T20:31:27,199   copying lobster/core/interfaces/download_service.py -> build/lib/lobster/core/interfaces
2026-01-07T20:31:27,202   copying lobster/core/interfaces/backend.py -> build/lib/lobster/core/interfaces
2026-01-07T20:31:27,204   copying lobster/core/interfaces/base_client.py -> build/lib/lobster/core/interfaces
2026-01-07T20:31:27,207   copying lobster/core/interfaces/validator.py -> build/lib/lobster/core/interfaces
2026-01-07T20:31:27,209   creating build/lib/lobster/core/adapters
2026-01-07T20:31:27,210   copying lobster/core/adapters/base.py -> build/lib/lobster/core/adapters
2026-01-07T20:31:27,213   copying lobster/core/adapters/__init__.py -> build/lib/lobster/core/adapters
2026-01-07T20:31:27,215   copying lobster/core/adapters/transcriptomics_adapter.py -> build/lib/lobster/core/adapters
2026-01-07T20:31:27,218   copying lobster/core/adapters/proteomics_adapter.py -> build/lib/lobster/core/adapters
2026-01-07T20:31:27,220   copying lobster/core/adapters/protein_structure_adapter.py -> build/lib/lobster/core/adapters
2026-01-07T20:31:27,223   copying lobster/core/adapters/pseudobulk_adapter.py -> build/lib/lobster/core/adapters
2026-01-07T20:31:27,226   creating build/lib/lobster/core/utils
2026-01-07T20:31:27,227   copying lobster/core/utils/__init__.py -> build/lib/lobster/core/utils
2026-01-07T20:31:27,229   copying lobster/core/utils/h5ad_utils.py -> build/lib/lobster/core/utils
2026-01-07T20:31:27,232   creating build/lib/lobster/core/backends
2026-01-07T20:31:27,233   copying lobster/core/backends/base.py -> build/lib/lobster/core/backends
2026-01-07T20:31:27,235   copying lobster/core/backends/__init__.py -> build/lib/lobster/core/backends
2026-01-07T20:31:27,237   copying lobster/core/backends/mudata_backend.py -> build/lib/lobster/core/backends
2026-01-07T20:31:27,240   copying lobster/core/backends/h5ad_backend.py -> build/lib/lobster/core/backends
2026-01-07T20:31:27,243   creating build/lib/lobster/core/identifiers
2026-01-07T20:31:27,244   copying lobster/core/identifiers/__init__.py -> build/lib/lobster/core/identifiers
2026-01-07T20:31:27,246   copying lobster/core/identifiers/accession_resolver.py -> build/lib/lobster/core/identifiers
2026-01-07T20:31:27,250   creating build/lib/lobster/core/schemas
2026-01-07T20:31:27,251   copying lobster/core/schemas/database_registry.py -> build/lib/lobster/core/schemas
2026-01-07T20:31:27,253   copying lobster/core/schemas/sra.py -> build/lib/lobster/core/schemas
2026-01-07T20:31:27,256   copying lobster/core/schemas/export_schemas.py -> build/lib/lobster/core/schemas
2026-01-07T20:31:27,260   copying lobster/core/schemas/__init__.py -> build/lib/lobster/core/schemas
2026-01-07T20:31:27,262   copying lobster/core/schemas/database_mappings.py -> build/lib/lobster/core/schemas
2026-01-07T20:31:27,265   copying lobster/core/schemas/protein_structure.py -> build/lib/lobster/core/schemas
2026-01-07T20:31:27,267   copying lobster/core/schemas/publication_queue.py -> build/lib/lobster/core/schemas
2026-01-07T20:31:27,270   copying lobster/core/schemas/transcriptomics.py -> build/lib/lobster/core/schemas
2026-01-07T20:31:27,273   copying lobster/core/schemas/proteomics.py -> build/lib/lobster/core/schemas
2026-01-07T20:31:27,276   copying lobster/core/schemas/download_queue.py -> build/lib/lobster/core/schemas
2026-01-07T20:31:27,279   copying lobster/core/schemas/validation.py -> build/lib/lobster/core/schemas
2026-01-07T20:31:27,281   copying lobster/core/schemas/metagenomics.py -> build/lib/lobster/core/schemas
2026-01-07T20:31:27,284   copying lobster/core/schemas/metabolomics.py -> build/lib/lobster/core/schemas
2026-01-07T20:31:27,287   copying lobster/core/schemas/download_urls.py -> build/lib/lobster/core/schemas
2026-01-07T20:31:27,290   creating build/lib/lobster/services/templates
2026-01-07T20:31:27,292   copying lobster/services/templates/__init__.py -> build/lib/lobster/services/templates
2026-01-07T20:31:27,293   copying lobster/services/templates/annotation_templates.py -> build/lib/lobster/services/templates
2026-01-07T20:31:27,297   creating build/lib/lobster/services/visualization
2026-01-07T20:31:27,298   copying lobster/services/visualization/pymol_visualization_service.py -> build/lib/lobster/services/visualization
2026-01-07T20:31:27,301   copying lobster/services/visualization/visualization_service.py -> build/lib/lobster/services/visualization
2026-01-07T20:31:27,305   copying lobster/services/visualization/__init__.py -> build/lib/lobster/services/visualization
2026-01-07T20:31:27,307   copying lobster/services/visualization/bulk_visualization_service.py -> build/lib/lobster/services/visualization
2026-01-07T20:31:27,310   creating build/lib/lobster/services/metadata
2026-01-07T20:31:27,311   copying lobster/services/metadata/identifier_provenance_service.py -> build/lib/lobster/services/metadata
2026-01-07T20:31:27,314   copying lobster/services/metadata/metadata_validation_service.py -> build/lib/lobster/services/metadata
2026-01-07T20:31:27,316   copying lobster/services/metadata/metadata_standardization_service.py -> build/lib/lobster/services/metadata
2026-01-07T20:31:27,319   copying lobster/services/metadata/__init__.py -> build/lib/lobster/services/metadata
2026-01-07T20:31:27,321   copying lobster/services/metadata/manual_annotation_service.py -> build/lib/lobster/services/metadata
2026-01-07T20:31:27,324   copying lobster/services/metadata/sample_grouping_service.py -> build/lib/lobster/services/metadata
2026-01-07T20:31:27,326   creating build/lib/lobster/services/quality
2026-01-07T20:31:27,327   copying lobster/services/quality/__init__.py -> build/lib/lobster/services/quality
2026-01-07T20:31:27,329   copying lobster/services/quality/preprocessing_service.py -> build/lib/lobster/services/quality
2026-01-07T20:31:27,332   copying lobster/services/quality/quality_service.py -> build/lib/lobster/services/quality
2026-01-07T20:31:27,336   creating build/lib/lobster/services/ml
2026-01-07T20:31:27,337   copying lobster/services/ml/__init__.py -> build/lib/lobster/services/ml
2026-01-07T20:31:27,339   creating build/lib/lobster/services/data_management
2026-01-07T20:31:27,340   copying lobster/services/data_management/concatenation_service.py -> build/lib/lobster/services/data_management
2026-01-07T20:31:27,344   copying lobster/services/data_management/__init__.py -> build/lib/lobster/services/data_management
2026-01-07T20:31:27,345   copying lobster/services/data_management/modality_management_service.py -> build/lib/lobster/services/data_management
2026-01-07T20:31:27,349   creating build/lib/lobster/services/orchestration
2026-01-07T20:31:27,350   copying lobster/services/orchestration/publication_processing_service.py -> build/lib/lobster/services/orchestration
2026-01-07T20:31:27,354   copying lobster/services/orchestration/__init__.py -> build/lib/lobster/services/orchestration
2026-01-07T20:31:27,356   creating build/lib/lobster/services/analysis
2026-01-07T20:31:27,357   copying lobster/services/analysis/structure_analysis_service.py -> build/lib/lobster/services/analysis
2026-01-07T20:31:27,360   copying lobster/services/analysis/pseudobulk_service.py -> build/lib/lobster/services/analysis
2026-01-07T20:31:27,363   copying lobster/services/analysis/enhanced_singlecell_service.py -> build/lib/lobster/services/analysis
2026-01-07T20:31:27,366   copying lobster/services/analysis/__init__.py -> build/lib/lobster/services/analysis
2026-01-07T20:31:27,368   copying lobster/services/analysis/bulk_rnaseq_service.py -> build/lib/lobster/services/analysis
2026-01-07T20:31:27,372   copying lobster/services/analysis/differential_formula_service.py -> build/lib/lobster/services/analysis
2026-01-07T20:31:27,375   copying lobster/services/analysis/scvi_embedding_service.py -> build/lib/lobster/services/analysis
2026-01-07T20:31:27,377   copying lobster/services/analysis/clustering_service.py -> build/lib/lobster/services/analysis
2026-01-07T20:31:27,382   creating build/lib/lobster/services/execution
2026-01-07T20:31:27,384   copying lobster/services/execution/custom_code_execution_service.py -> build/lib/lobster/services/execution
2026-01-07T20:31:27,387   copying lobster/services/execution/__init__.py -> build/lib/lobster/services/execution
2026-01-07T20:31:27,389   copying lobster/services/execution/execution_context_builder.py -> build/lib/lobster/services/execution
2026-01-07T20:31:27,392   creating build/lib/lobster/services/data_access
2026-01-07T20:31:27,393   copying lobster/services/data_access/content_access_service.py -> build/lib/lobster/services/data_access
2026-01-07T20:31:27,397   copying lobster/services/data_access/protein_structure_fetch_service.py -> build/lib/lobster/services/data_access
2026-01-07T20:31:27,400   copying lobster/services/data_access/geo_service.py -> build/lib/lobster/services/data_access
2026-01-07T20:31:27,406   copying lobster/services/data_access/sra_download_service.py -> build/lib/lobster/services/data_access
2026-01-07T20:31:27,409   copying lobster/services/data_access/pride_download_service.py -> build/lib/lobster/services/data_access
2026-01-07T20:31:27,411   copying lobster/services/data_access/geo_fallback_service.py -> build/lib/lobster/services/data_access
2026-01-07T20:31:27,414   copying lobster/services/data_access/__init__.py -> build/lib/lobster/services/data_access
2026-01-07T20:31:27,416   copying lobster/services/data_access/docling_service.py -> build/lib/lobster/services/data_access
2026-01-07T20:31:27,419   copying lobster/services/data_access/workspace_content_service.py -> build/lib/lobster/services/data_access
2026-01-07T20:31:27,421   copying lobster/services/data_access/geo_download_service.py -> build/lib/lobster/services/data_access
2026-01-07T20:31:27,424   copying lobster/services/data_access/massive_download_service.py -> build/lib/lobster/services/data_access
2026-01-07T20:31:27,427   creating build/lib/lobster/services/metadata/protocol_extraction
2026-01-07T20:31:27,428   copying lobster/services/metadata/protocol_extraction/base.py -> build/lib/lobster/services/metadata/protocol_extraction
2026-01-07T20:31:27,430   copying lobster/services/metadata/protocol_extraction/__init__.py -> build/lib/lobster/services/metadata/protocol_extraction
2026-01-07T20:31:27,433   creating build/lib/lobster/services/metadata/protocol_extraction/amplicon
2026-01-07T20:31:27,434   copying lobster/services/metadata/protocol_extraction/amplicon/service.py -> build/lib/lobster/services/metadata/protocol_extraction/amplicon
2026-01-07T20:31:27,437   copying lobster/services/metadata/protocol_extraction/amplicon/__init__.py -> build/lib/lobster/services/metadata/protocol_extraction/amplicon
2026-01-07T20:31:27,439   copying lobster/services/metadata/protocol_extraction/amplicon/details.py -> build/lib/lobster/services/metadata/protocol_extraction/amplicon
2026-01-07T20:31:27,442   creating build/lib/lobster/services/metadata/protocol_extraction/rnaseq
2026-01-07T20:31:27,443   copying lobster/services/metadata/protocol_extraction/rnaseq/service.py -> build/lib/lobster/services/metadata/protocol_extraction/rnaseq
2026-01-07T20:31:27,445   copying lobster/services/metadata/protocol_extraction/rnaseq/__init__.py -> build/lib/lobster/services/metadata/protocol_extraction/rnaseq
2026-01-07T20:31:27,447   copying lobster/services/metadata/protocol_extraction/rnaseq/details.py -> build/lib/lobster/services/metadata/protocol_extraction/rnaseq
2026-01-07T20:31:27,449   creating build/lib/lobster/services/metadata/protocol_extraction/mass_spec
2026-01-07T20:31:27,450   copying lobster/services/metadata/protocol_extraction/mass_spec/service.py -> build/lib/lobster/services/metadata/protocol_extraction/mass_spec
2026-01-07T20:31:27,452   copying lobster/services/metadata/protocol_extraction/mass_spec/__init__.py -> build/lib/lobster/services/metadata/protocol_extraction/mass_spec
2026-01-07T20:31:27,454   copying lobster/services/metadata/protocol_extraction/mass_spec/details.py -> build/lib/lobster/services/metadata/protocol_extraction/mass_spec
2026-01-07T20:31:27,457   creating build/lib/lobster/services/data_access/geo
2026-01-07T20:31:27,458   copying lobster/services/data_access/geo/strategy.py -> build/lib/lobster/services/data_access/geo
2026-01-07T20:31:27,461   copying lobster/services/data_access/geo/__init__.py -> build/lib/lobster/services/data_access/geo
2026-01-07T20:31:27,463   copying lobster/services/data_access/geo/facade.py -> build/lib/lobster/services/data_access/geo
2026-01-07T20:31:27,465   copying lobster/services/data_access/geo/downloader.py -> build/lib/lobster/services/data_access/geo
2026-01-07T20:31:27,468   copying lobster/services/data_access/geo/constants.py -> build/lib/lobster/services/data_access/geo
2026-01-07T20:31:27,471   copying lobster/services/data_access/geo/parser.py -> build/lib/lobster/services/data_access/geo
2026-01-07T20:31:27,474   creating build/lib/lobster/services/data_access/geo/metadata
2026-01-07T20:31:27,475   copying lobster/services/data_access/geo/metadata/__init__.py -> build/lib/lobster/services/data_access/geo/metadata
2026-01-07T20:31:27,477   creating build/lib/lobster/services/data_access/geo/sample
2026-01-07T20:31:27,478   copying lobster/services/data_access/geo/sample/__init__.py -> build/lib/lobster/services/data_access/geo/sample
2026-01-07T20:31:27,481   creating build/lib/lobster/services/data_access/geo/utils
2026-01-07T20:31:27,482   copying lobster/services/data_access/geo/utils/__init__.py -> build/lib/lobster/services/data_access/geo/utils
2026-01-07T20:31:27,484   creating build/lib/lobster/services/data_access/geo/loaders
2026-01-07T20:31:27,486   copying lobster/services/data_access/geo/loaders/__init__.py -> build/lib/lobster/services/data_access/geo/loaders
2026-01-07T20:31:27,488   copying lobster/services/data_access/geo/loaders/tenx.py -> build/lib/lobster/services/data_access/geo/loaders
2026-01-07T20:31:27,491   creating build/lib/lobster/agents/archive
2026-01-07T20:31:27,492   copying lobster/agents/archive/research_agent_assistant.py -> build/lib/lobster/agents/archive
2026-01-07T20:31:27,495   creating build/lib/lobster/agents/proteomics
2026-01-07T20:31:27,496   copying lobster/agents/proteomics/__init__.py -> build/lib/lobster/agents/proteomics
2026-01-07T20:31:27,498   copying lobster/agents/proteomics/state.py -> build/lib/lobster/agents/proteomics
2026-01-07T20:31:27,500   creating build/lib/lobster/agents/transcriptomics
2026-01-07T20:31:27,501   copying lobster/agents/transcriptomics/shared_tools.py -> build/lib/lobster/agents/transcriptomics
2026-01-07T20:31:27,504   copying lobster/agents/transcriptomics/__init__.py -> build/lib/lobster/agents/transcriptomics
2026-01-07T20:31:27,506   copying lobster/agents/transcriptomics/de_analysis_expert.py -> build/lib/lobster/agents/transcriptomics
2026-01-07T20:31:27,510   copying lobster/agents/transcriptomics/transcriptomics_expert.py -> build/lib/lobster/agents/transcriptomics
2026-01-07T20:31:27,513   copying lobster/agents/transcriptomics/annotation_expert.py -> build/lib/lobster/agents/transcriptomics
2026-01-07T20:31:27,516   copying lobster/agents/transcriptomics/state.py -> build/lib/lobster/agents/transcriptomics
2026-01-07T20:31:27,518   creating build/lib/lobster/agents/langgraph_supervisor
2026-01-07T20:31:27,519   copying lobster/agents/langgraph_supervisor/agent_name.py -> build/lib/lobster/agents/langgraph_supervisor
2026-01-07T20:31:27,522   copying lobster/agents/langgraph_supervisor/__init__.py -> build/lib/lobster/agents/langgraph_supervisor
2026-01-07T20:31:27,524   copying lobster/agents/langgraph_supervisor/handoff.py -> build/lib/lobster/agents/langgraph_supervisor
2026-01-07T20:31:27,526   copying lobster/agents/langgraph_supervisor/supervisor.py -> build/lib/lobster/agents/langgraph_supervisor
2026-01-07T20:31:27,529   creating build/lib/lobster/cli_internal/utils
2026-01-07T20:31:27,530   copying lobster/cli_internal/utils/__init__.py -> build/lib/lobster/cli_internal/utils
2026-01-07T20:31:27,533   copying lobster/cli_internal/utils/path_resolution.py -> build/lib/lobster/cli_internal/utils
2026-01-07T20:31:27,536   creating build/lib/lobster/cli_internal/commands
2026-01-07T20:31:27,537   copying lobster/cli_internal/commands/__init__.py -> build/lib/lobster/cli_internal/commands
2026-01-07T20:31:27,539   copying lobster/cli_internal/commands/output_adapter.py -> build/lib/lobster/cli_internal/commands
2026-01-07T20:31:27,542   creating build/lib/lobster/cli_internal/commands/light
2026-01-07T20:31:27,543   copying lobster/cli_internal/commands/light/config_commands.py -> build/lib/lobster/cli_internal/commands/light
2026-01-07T20:31:27,546   copying lobster/cli_internal/commands/light/__init__.py -> build/lib/lobster/cli_internal/commands/light
2026-01-07T20:31:27,548   copying lobster/cli_internal/commands/light/pipeline_commands.py -> build/lib/lobster/cli_internal/commands/light
2026-01-07T20:31:27,550   copying lobster/cli_internal/commands/light/workspace_commands.py -> build/lib/lobster/cli_internal/commands/light
2026-01-07T20:31:27,553   copying lobster/cli_internal/commands/light/file_commands.py -> build/lib/lobster/cli_internal/commands/light
2026-01-07T20:31:27,556   copying lobster/cli_internal/commands/light/queue_commands.py -> build/lib/lobster/cli_internal/commands/light
2026-01-07T20:31:27,558   copying lobster/cli_internal/commands/light/metadata_commands.py -> build/lib/lobster/cli_internal/commands/light
2026-01-07T20:31:27,561   creating build/lib/lobster/cli_internal/commands/heavy
2026-01-07T20:31:27,562   copying lobster/cli_internal/commands/heavy/__init__.py -> build/lib/lobster/cli_internal/commands/heavy
2026-01-07T20:31:27,564   copying lobster/cli_internal/commands/heavy/visualization_commands.py -> build/lib/lobster/cli_internal/commands/heavy
2026-01-07T20:31:27,567   copying lobster/cli_internal/commands/heavy/modality_commands.py -> build/lib/lobster/cli_internal/commands/heavy
2026-01-07T20:31:27,569   copying lobster/cli_internal/commands/heavy/data_commands.py -> build/lib/lobster/cli_internal/commands/heavy
2026-01-07T20:31:27,572   creating build/lib/lobster/ui/components
2026-01-07T20:31:27,573   copying lobster/ui/components/__init__.py -> build/lib/lobster/ui/components
2026-01-07T20:31:27,575   copying lobster/ui/components/multi_progress.py -> build/lib/lobster/ui/components
2026-01-07T20:31:27,578   copying lobster/ui/components/status_display.py -> build/lib/lobster/ui/components
2026-01-07T20:31:27,581   copying lobster/ui/components/file_tree.py -> build/lib/lobster/ui/components
2026-01-07T20:31:27,584   copying lobster/ui/components/parallel_workers_progress.py -> build/lib/lobster/ui/components
2026-01-07T20:31:27,586   creating build/lib/lobster/ui/callbacks
2026-01-07T20:31:27,587   copying lobster/ui/callbacks/textual_callback.py -> build/lib/lobster/ui/callbacks
2026-01-07T20:31:27,590   copying lobster/ui/callbacks/__init__.py -> build/lib/lobster/ui/callbacks
2026-01-07T20:31:27,592   creating build/lib/lobster/ui/screens
2026-01-07T20:31:27,593   copying lobster/ui/screens/__init__.py -> build/lib/lobster/ui/screens
2026-01-07T20:31:27,595   copying lobster/ui/screens/analysis_screen.py -> build/lib/lobster/ui/screens
2026-01-07T20:31:27,598   creating build/lib/lobster/ui/formatters
2026-01-07T20:31:27,600   copying lobster/ui/formatters/__init__.py -> build/lib/lobster/ui/formatters
2026-01-07T20:31:27,602   creating build/lib/lobster/ui/services
2026-01-07T20:31:27,603   copying lobster/ui/services/__init__.py -> build/lib/lobster/ui/services
2026-01-07T20:31:27,605   copying lobster/ui/services/error_service.py -> build/lib/lobster/ui/services
2026-01-07T20:31:27,608   creating build/lib/lobster/ui/widgets
2026-01-07T20:31:27,609   copying lobster/ui/widgets/connections_panel.py -> build/lib/lobster/ui/widgets
2026-01-07T20:31:27,611   copying lobster/ui/widgets/error_modal.py -> build/lib/lobster/ui/widgets
2026-01-07T20:31:27,614   copying lobster/ui/widgets/adapters_panel.py -> build/lib/lobster/ui/widgets
2026-01-07T20:31:27,616   copying lobster/ui/widgets/__init__.py -> build/lib/lobster/ui/widgets
2026-01-07T20:31:27,618   copying lobster/ui/widgets/data_hub.py -> build/lib/lobster/ui/widgets
2026-01-07T20:31:27,621   copying lobster/ui/widgets/queue_status_bar.py -> build/lib/lobster/ui/widgets
2026-01-07T20:31:27,623   copying lobster/ui/widgets/chat_message.py -> build/lib/lobster/ui/widgets
2026-01-07T20:31:27,626   copying lobster/ui/widgets/query_prompt.py -> build/lib/lobster/ui/widgets
2026-01-07T20:31:27,628   copying lobster/ui/widgets/token_usage_panel.py -> build/lib/lobster/ui/widgets
2026-01-07T20:31:27,630   copying lobster/ui/widgets/activity_log.py -> build/lib/lobster/ui/widgets
2026-01-07T20:31:27,632   copying lobster/ui/widgets/system_info.py -> build/lib/lobster/ui/widgets
2026-01-07T20:31:27,634   copying lobster/ui/widgets/status_bar.py -> build/lib/lobster/ui/widgets
2026-01-07T20:31:27,636   copying lobster/ui/widgets/agents_panel.py -> build/lib/lobster/ui/widgets
2026-01-07T20:31:27,638   copying lobster/ui/widgets/results_display.py -> build/lib/lobster/ui/widgets
2026-01-07T20:31:27,641   copying lobster/ui/widgets/queue_panel.py -> build/lib/lobster/ui/widgets
2026-01-07T20:31:27,643   copying lobster/ui/widgets/modality_list.py -> build/lib/lobster/ui/widgets
2026-01-07T20:31:27,645   copying lobster/ui/widgets/plot_preview.py -> build/lib/lobster/ui/widgets
2026-01-07T20:31:27,647   creating build/lib/lobster/tools/archive
2026-01-07T20:31:27,648   copying lobster/tools/archive/unified_content_service.py -> build/lib/lobster/tools/archive
2026-01-07T20:31:27,651   copying lobster/tools/archive/publication_service.py -> build/lib/lobster/tools/archive
2026-01-07T20:31:27,655   creating build/lib/lobster/tools/providers
2026-01-07T20:31:27,656   copying lobster/tools/providers/structure_provider.py -> build/lib/lobster/tools/providers
2026-01-07T20:31:27,658   copying lobster/tools/providers/base_provider.py -> build/lib/lobster/tools/providers
2026-01-07T20:31:27,660   copying lobster/tools/providers/pmc_provider.py -> build/lib/lobster/tools/providers
2026-01-07T20:31:27,664   copying lobster/tools/providers/webpage_provider.py -> build/lib/lobster/tools/providers
2026-01-07T20:31:27,667   copying lobster/tools/providers/__init__.py -> build/lib/lobster/tools/providers
2026-01-07T20:31:27,669   copying lobster/tools/providers/organism_enum.py -> build/lib/lobster/tools/providers
2026-01-07T20:31:27,671   copying lobster/tools/providers/abstract_provider.py -> build/lib/lobster/tools/providers
2026-01-07T20:31:27,673   copying lobster/tools/providers/massive_provider.py -> build/lib/lobster/tools/providers
2026-01-07T20:31:27,676   copying lobster/tools/providers/provider_registry.py -> build/lib/lobster/tools/providers
2026-01-07T20:31:27,678   copying lobster/tools/providers/pdb_provider.py -> build/lib/lobster/tools/providers
2026-01-07T20:31:27,681   copying lobster/tools/providers/pride_provider.py -> build/lib/lobster/tools/providers
2026-01-07T20:31:27,683   copying lobster/tools/providers/geo_provider.py -> build/lib/lobster/tools/providers
2026-01-07T20:31:27,687   copying lobster/tools/providers/biorxiv_medrxiv_config.py -> build/lib/lobster/tools/providers
2026-01-07T20:31:27,689   copying lobster/tools/providers/sra_provider.py -> build/lib/lobster/tools/providers
2026-01-07T20:31:27,692   copying lobster/tools/providers/biorxiv_medrxiv_provider.py -> build/lib/lobster/tools/providers
2026-01-07T20:31:27,695   copying lobster/tools/providers/ncbi_query_builder.py -> build/lib/lobster/tools/providers
2026-01-07T20:31:27,698   copying lobster/tools/providers/publication_resolver.py -> build/lib/lobster/tools/providers
2026-01-07T20:31:27,701   copying lobster/tools/providers/pubmed_provider.py -> build/lib/lobster/tools/providers
2026-01-07T20:31:27,704   copying lobster/tools/providers/geo_utils.py -> build/lib/lobster/tools/providers
2026-01-07T20:31:27,706   copying lobster/tools/providers/pride_normalizer.py -> build/lib/lobster/tools/providers
2026-01-07T20:31:27,709   copying lobster/tools/providers/biopython_entrez_wrapper.py -> build/lib/lobster/tools/providers
2026-01-07T20:31:27,712   running egg_info
2026-01-07T20:31:27,723   writing lobster_ai.egg-info/PKG-INFO
2026-01-07T20:31:27,754   writing dependency_links to lobster_ai.egg-info/dependency_links.txt
2026-01-07T20:31:27,755   writing entry points to lobster_ai.egg-info/entry_points.txt
2026-01-07T20:31:27,775   writing requirements to lobster_ai.egg-info/requires.txt
2026-01-07T20:31:27,776   writing top-level names to lobster_ai.egg-info/top_level.txt
2026-01-07T20:31:27,901   reading manifest file 'lobster_ai.egg-info/SOURCES.txt'
2026-01-07T20:31:27,917   adding license file 'LICENSE'
2026-01-07T20:31:27,931   writing manifest file 'lobster_ai.egg-info/SOURCES.txt'
2026-01-07T20:31:28,026   creating build/lib/lobster/services/metadata/protocol_extraction/amplicon/resources
2026-01-07T20:31:28,027   copying lobster/services/metadata/protocol_extraction/amplicon/resources/primers.json -> build/lib/lobster/services/metadata/protocol_extraction/amplicon/resources
2026-01-07T20:31:28,065   installing to build/bdist.linux-armv7l/wheel
2026-01-07T20:31:28,066   running install
2026-01-07T20:31:28,089   running install_lib
2026-01-07T20:31:28,096   creating build/bdist.linux-armv7l/wheel
2026-01-07T20:31:28,098   creating build/bdist.linux-armv7l/wheel/lobster
2026-01-07T20:31:28,100   creating build/bdist.linux-armv7l/wheel/lobster/config
2026-01-07T20:31:28,101   copying build/lib/lobster/config/settings.py -> build/bdist.linux-armv7l/wheel/./lobster/config
2026-01-07T20:31:28,104   copying build/lib/lobster/config/subscription_tiers.py -> build/bdist.linux-armv7l/wheel/./lobster/config
2026-01-07T20:31:28,106   copying build/lib/lobster/config/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/config
2026-01-07T20:31:28,108   copying build/lib/lobster/config/provider_setup.py -> build/bdist.linux-armv7l/wheel/./lobster/config
2026-01-07T20:31:28,111   copying build/lib/lobster/config/agent_config.py -> build/bdist.linux-armv7l/wheel/./lobster/config
2026-01-07T20:31:28,114   copying build/lib/lobster/config/constants.py -> build/bdist.linux-armv7l/wheel/./lobster/config
2026-01-07T20:31:28,116   creating build/bdist.linux-armv7l/wheel/lobster/config/providers
2026-01-07T20:31:28,117   copying build/lib/lobster/config/providers/base_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers
2026-01-07T20:31:28,119   copying build/lib/lobster/config/providers/gemini_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers
2026-01-07T20:31:28,122   copying build/lib/lobster/config/providers/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers
2026-01-07T20:31:28,123   copying build/lib/lobster/config/providers/bedrock_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers
2026-01-07T20:31:28,126   copying build/lib/lobster/config/providers/anthropic_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers
2026-01-07T20:31:28,129   copying build/lib/lobster/config/providers/ollama_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers
2026-01-07T20:31:28,133   copying build/lib/lobster/config/providers/registry.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers
2026-01-07T20:31:28,135   copying build/lib/lobster/config/agent_registry.py -> build/bdist.linux-armv7l/wheel/./lobster/config
2026-01-07T20:31:28,137   copying build/lib/lobster/config/ollama_service.py -> build/bdist.linux-armv7l/wheel/./lobster/config
2026-01-07T20:31:28,140   copying build/lib/lobster/config/config_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/config
2026-01-07T20:31:28,142   copying build/lib/lobster/config/global_config.py -> build/bdist.linux-armv7l/wheel/./lobster/config
2026-01-07T20:31:28,145   copying build/lib/lobster/config/workspace_config.py -> build/bdist.linux-armv7l/wheel/./lobster/config
2026-01-07T20:31:28,147   copying build/lib/lobster/config/agent_capabilities.py -> build/bdist.linux-armv7l/wheel/./lobster/config
2026-01-07T20:31:28,150   copying build/lib/lobster/config/supervisor_config.py -> build/bdist.linux-armv7l/wheel/./lobster/config
2026-01-07T20:31:28,152   copying build/lib/lobster/config/model_service.py -> build/bdist.linux-armv7l/wheel/./lobster/config
2026-01-07T20:31:28,155   copying build/lib/lobster/config/base_config.py -> build/bdist.linux-armv7l/wheel/./lobster/config
2026-01-07T20:31:28,157   copying build/lib/lobster/config/llm_factory.py -> build/bdist.linux-armv7l/wheel/./lobster/config
2026-01-07T20:31:28,159   copying build/lib/lobster/__main__.py -> build/bdist.linux-armv7l/wheel/./lobster
2026-01-07T20:31:28,161   copying build/lib/lobster/main.py -> build/bdist.linux-armv7l/wheel/./lobster
2026-01-07T20:31:28,163   creating build/bdist.linux-armv7l/wheel/lobster/utils
2026-01-07T20:31:28,165   copying build/lib/lobster/utils/ssl_utils.py -> build/bdist.linux-armv7l/wheel/./lobster/utils
2026-01-07T20:31:28,167   copying build/lib/lobster/utils/file_naming.py -> build/bdist.linux-armv7l/wheel/./lobster/utils
2026-01-07T20:31:28,169   copying build/lib/lobster/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/utils
2026-01-07T20:31:28,171   copying build/lib/lobster/utils/error_handlers.py -> build/bdist.linux-armv7l/wheel/./lobster/utils
2026-01-07T20:31:28,174   copying build/lib/lobster/utils/progress_wrapper.py -> build/bdist.linux-armv7l/wheel/./lobster/utils
2026-01-07T20:31:28,176   copying build/lib/lobster/utils/deviance.py -> build/bdist.linux-armv7l/wheel/./lobster/utils
2026-01-07T20:31:28,178   copying build/lib/lobster/utils/system.py -> build/bdist.linux-armv7l/wheel/./lobster/utils
2026-01-07T20:31:28,180   copying build/lib/lobster/utils/logger.py -> build/bdist.linux-armv7l/wheel/./lobster/utils
2026-01-07T20:31:28,182   copying build/lib/lobster/utils/json_extractor.py -> build/bdist.linux-armv7l/wheel/./lobster/utils
2026-01-07T20:31:28,184   copying build/lib/lobster/utils/callbacks.py -> build/bdist.linux-armv7l/wheel/./lobster/utils
2026-01-07T20:31:28,188   copying build/lib/lobster/utils/file_analyzer.py -> build/bdist.linux-armv7l/wheel/./lobster/utils
2026-01-07T20:31:28,190   copying build/lib/lobster/_version.py -> build/bdist.linux-armv7l/wheel/./lobster
2026-01-07T20:31:28,193   creating build/bdist.linux-armv7l/wheel/lobster/core
2026-01-07T20:31:28,194   copying build/lib/lobster/core/component_registry.py -> build/bdist.linux-armv7l/wheel/./lobster/core
2026-01-07T20:31:28,197   copying build/lib/lobster/core/exceptions.py -> build/bdist.linux-armv7l/wheel/./lobster/core
2026-01-07T20:31:28,200   creating build/bdist.linux-armv7l/wheel/lobster/core/interfaces
2026-01-07T20:31:28,201   copying build/lib/lobster/core/interfaces/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces
2026-01-07T20:31:28,203   copying build/lib/lobster/core/interfaces/adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces
2026-01-07T20:31:28,205   copying build/lib/lobster/core/interfaces/download_service.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces
2026-01-07T20:31:28,208   copying build/lib/lobster/core/interfaces/backend.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces
2026-01-07T20:31:28,210   copying build/lib/lobster/core/interfaces/base_client.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces
2026-01-07T20:31:28,213   copying build/lib/lobster/core/interfaces/validator.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces
2026-01-07T20:31:28,216   copying build/lib/lobster/core/notebook_exporter.py -> build/bdist.linux-armv7l/wheel/./lobster/core
2026-01-07T20:31:28,218   copying build/lib/lobster/core/data_manager_v2.py -> build/bdist.linux-armv7l/wheel/./lobster/core
2026-01-07T20:31:28,223   copying build/lib/lobster/core/ris_parser.py -> build/bdist.linux-armv7l/wheel/./lobster/core
2026-01-07T20:31:28,226   copying build/lib/lobster/core/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core
2026-01-07T20:31:28,228   copying build/lib/lobster/core/provenance.py -> build/bdist.linux-armv7l/wheel/./lobster/core
2026-01-07T20:31:28,231   copying build/lib/lobster/core/publication_queue.py -> build/bdist.linux-armv7l/wheel/./lobster/core
2026-01-07T20:31:28,233   copying build/lib/lobster/core/workspace.py -> build/bdist.linux-armv7l/wheel/./lobster/core
2026-01-07T20:31:28,236   creating build/bdist.linux-armv7l/wheel/lobster/core/adapters
2026-01-07T20:31:28,237   copying build/lib/lobster/core/adapters/base.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters
2026-01-07T20:31:28,240   copying build/lib/lobster/core/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters
2026-01-07T20:31:28,242   copying build/lib/lobster/core/adapters/transcriptomics_adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters
2026-01-07T20:31:28,244   copying build/lib/lobster/core/adapters/proteomics_adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters
2026-01-07T20:31:28,247   copying build/lib/lobster/core/adapters/protein_structure_adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters
2026-01-07T20:31:28,250   copying build/lib/lobster/core/adapters/pseudobulk_adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters
2026-01-07T20:31:28,253   creating build/bdist.linux-armv7l/wheel/lobster/core/utils
2026-01-07T20:31:28,254   copying build/lib/lobster/core/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/utils
2026-01-07T20:31:28,256   copying build/lib/lobster/core/utils/h5ad_utils.py -> build/bdist.linux-armv7l/wheel/./lobster/core/utils
2026-01-07T20:31:28,259   copying build/lib/lobster/core/download_queue.py -> build/bdist.linux-armv7l/wheel/./lobster/core
2026-01-07T20:31:28,261   copying build/lib/lobster/core/config_resolver.py -> build/bdist.linux-armv7l/wheel/./lobster/core
2026-01-07T20:31:28,264   creating build/bdist.linux-armv7l/wheel/lobster/core/backends
2026-01-07T20:31:28,266   copying build/lib/lobster/core/backends/base.py -> build/bdist.linux-armv7l/wheel/./lobster/core/backends
2026-01-07T20:31:28,268   copying build/lib/lobster/core/backends/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/backends
2026-01-07T20:31:28,270   copying build/lib/lobster/core/backends/mudata_backend.py -> build/bdist.linux-armv7l/wheel/./lobster/core/backends
2026-01-07T20:31:28,273   copying build/lib/lobster/core/backends/h5ad_backend.py -> build/bdist.linux-armv7l/wheel/./lobster/core/backends
2026-01-07T20:31:28,276   copying build/lib/lobster/core/notebook_executor.py -> build/bdist.linux-armv7l/wheel/./lobster/core
2026-01-07T20:31:28,278   copying build/lib/lobster/core/plugin_loader.py -> build/bdist.linux-armv7l/wheel/./lobster/core
2026-01-07T20:31:28,281   copying build/lib/lobster/core/client.py -> build/bdist.linux-armv7l/wheel/./lobster/core
2026-01-07T20:31:28,289   creating build/bdist.linux-armv7l/wheel/lobster/core/identifiers
2026-01-07T20:31:28,291   copying build/lib/lobster/core/identifiers/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/identifiers
2026-01-07T20:31:28,296   copying build/lib/lobster/core/identifiers/accession_resolver.py -> build/bdist.linux-armv7l/wheel/./lobster/core/identifiers
2026-01-07T20:31:28,299   copying build/lib/lobster/core/archive_utils.py -> build/bdist.linux-armv7l/wheel/./lobster/core
2026-01-07T20:31:28,301   copying build/lib/lobster/core/plot_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/core
2026-01-07T20:31:28,306   creating build/bdist.linux-armv7l/wheel/lobster/core/schemas
2026-01-07T20:31:28,308   copying build/lib/lobster/core/schemas/database_registry.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas
2026-01-07T20:31:28,310   copying build/lib/lobster/core/schemas/sra.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas
2026-01-07T20:31:28,314   copying build/lib/lobster/core/schemas/export_schemas.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas
2026-01-07T20:31:28,317   copying build/lib/lobster/core/schemas/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas
2026-01-07T20:31:28,319   copying build/lib/lobster/core/schemas/database_mappings.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas
2026-01-07T20:31:28,322   copying build/lib/lobster/core/schemas/protein_structure.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas
2026-01-07T20:31:28,324   copying build/lib/lobster/core/schemas/publication_queue.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas
2026-01-07T20:31:28,327   copying build/lib/lobster/core/schemas/transcriptomics.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas
2026-01-07T20:31:28,331   copying build/lib/lobster/core/schemas/proteomics.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas
2026-01-07T20:31:28,334   copying build/lib/lobster/core/schemas/download_queue.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas
2026-01-07T20:31:28,337   copying build/lib/lobster/core/schemas/validation.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas
2026-01-07T20:31:28,339   copying build/lib/lobster/core/schemas/metagenomics.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas
2026-01-07T20:31:28,343   copying build/lib/lobster/core/schemas/metabolomics.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas
2026-01-07T20:31:28,346   copying build/lib/lobster/core/schemas/download_urls.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas
2026-01-07T20:31:28,348   copying build/lib/lobster/core/license_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/core
2026-01-07T20:31:28,352   copying build/lib/lobster/core/queue_storage.py -> build/bdist.linux-armv7l/wheel/./lobster/core
2026-01-07T20:31:28,354   copying build/lib/lobster/core/notebook_validator.py -> build/bdist.linux-armv7l/wheel/./lobster/core
2026-01-07T20:31:28,356   copying build/lib/lobster/core/ir_coverage.py -> build/bdist.linux-armv7l/wheel/./lobster/core
2026-01-07T20:31:28,359   copying build/lib/lobster/core/analysis_ir.py -> build/bdist.linux-armv7l/wheel/./lobster/core
2026-01-07T20:31:28,363   creating build/bdist.linux-armv7l/wheel/lobster/lobster_cloud
2026-01-07T20:31:28,364   copying build/lib/lobster/lobster_cloud/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/lobster_cloud
2026-01-07T20:31:28,367   copying build/lib/lobster/lobster_cloud/client.py -> build/bdist.linux-armv7l/wheel/./lobster/lobster_cloud
2026-01-07T20:31:28,370   copying build/lib/lobster/version.py -> build/bdist.linux-armv7l/wheel/./lobster
2026-01-07T20:31:28,372   copying build/lib/lobster/cli.py -> build/bdist.linux-armv7l/wheel/./lobster
2026-01-07T20:31:28,425   creating build/bdist.linux-armv7l/wheel/lobster/services
2026-01-07T20:31:28,426   creating build/bdist.linux-armv7l/wheel/lobster/services/templates
2026-01-07T20:31:28,428   copying build/lib/lobster/services/templates/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/templates
2026-01-07T20:31:28,430   copying build/lib/lobster/services/templates/annotation_templates.py -> build/bdist.linux-armv7l/wheel/./lobster/services/templates
2026-01-07T20:31:28,433   creating build/bdist.linux-armv7l/wheel/lobster/services/visualization
2026-01-07T20:31:28,434   copying build/lib/lobster/services/visualization/pymol_visualization_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/visualization
2026-01-07T20:31:28,439   copying build/lib/lobster/services/visualization/visualization_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/visualization
2026-01-07T20:31:28,446   copying build/lib/lobster/services/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/visualization
2026-01-07T20:31:28,450   copying build/lib/lobster/services/visualization/bulk_visualization_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/visualization
2026-01-07T20:31:28,457   creating build/bdist.linux-armv7l/wheel/lobster/services/metadata
2026-01-07T20:31:28,459   copying build/lib/lobster/services/metadata/identifier_provenance_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata
2026-01-07T20:31:28,461   copying build/lib/lobster/services/metadata/metadata_validation_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata
2026-01-07T20:31:28,464   copying build/lib/lobster/services/metadata/metadata_standardization_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata
2026-01-07T20:31:28,467   copying build/lib/lobster/services/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata
2026-01-07T20:31:28,469   creating build/bdist.linux-armv7l/wheel/lobster/services/metadata/protocol_extraction
2026-01-07T20:31:28,470   copying build/lib/lobster/services/metadata/protocol_extraction/base.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction
2026-01-07T20:31:28,472   copying build/lib/lobster/services/metadata/protocol_extraction/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction
2026-01-07T20:31:28,475   creating build/bdist.linux-armv7l/wheel/lobster/services/metadata/protocol_extraction/amplicon
2026-01-07T20:31:28,476   copying build/lib/lobster/services/metadata/protocol_extraction/amplicon/service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/amplicon
2026-01-07T20:31:28,479   copying build/lib/lobster/services/metadata/protocol_extraction/amplicon/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/amplicon
2026-01-07T20:31:28,481   creating build/bdist.linux-armv7l/wheel/lobster/services/metadata/protocol_extraction/amplicon/resources
2026-01-07T20:31:28,482   copying build/lib/lobster/services/metadata/protocol_extraction/amplicon/resources/primers.json -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/amplicon/resources
2026-01-07T20:31:28,484   copying build/lib/lobster/services/metadata/protocol_extraction/amplicon/details.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/amplicon
2026-01-07T20:31:28,487   creating build/bdist.linux-armv7l/wheel/lobster/services/metadata/protocol_extraction/rnaseq
2026-01-07T20:31:28,488   copying build/lib/lobster/services/metadata/protocol_extraction/rnaseq/service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/rnaseq
2026-01-07T20:31:28,491   copying build/lib/lobster/services/metadata/protocol_extraction/rnaseq/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/rnaseq
2026-01-07T20:31:28,492   copying build/lib/lobster/services/metadata/protocol_extraction/rnaseq/details.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/rnaseq
2026-01-07T20:31:28,495   creating build/bdist.linux-armv7l/wheel/lobster/services/metadata/protocol_extraction/mass_spec
2026-01-07T20:31:28,496   copying build/lib/lobster/services/metadata/protocol_extraction/mass_spec/service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/mass_spec
2026-01-07T20:31:28,498   copying build/lib/lobster/services/metadata/protocol_extraction/mass_spec/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/mass_spec
2026-01-07T20:31:28,500   copying build/lib/lobster/services/metadata/protocol_extraction/mass_spec/details.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/mass_spec
2026-01-07T20:31:28,502   copying build/lib/lobster/services/metadata/manual_annotation_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata
2026-01-07T20:31:28,505   copying build/lib/lobster/services/metadata/sample_grouping_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata
2026-01-07T20:31:28,507   copying build/lib/lobster/services/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services
2026-01-07T20:31:28,509   creating build/bdist.linux-armv7l/wheel/lobster/services/quality
2026-01-07T20:31:28,510   copying build/lib/lobster/services/quality/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/quality
2026-01-07T20:31:28,512   copying build/lib/lobster/services/quality/preprocessing_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/quality
2026-01-07T20:31:28,517   copying build/lib/lobster/services/quality/quality_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/quality
2026-01-07T20:31:28,526   creating build/bdist.linux-armv7l/wheel/lobster/services/ml
2026-01-07T20:31:28,529   copying build/lib/lobster/services/ml/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/ml
2026-01-07T20:31:28,534   creating build/bdist.linux-armv7l/wheel/lobster/services/data_management
2026-01-07T20:31:28,536   copying build/lib/lobster/services/data_management/concatenation_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_management
2026-01-07T20:31:28,544   copying build/lib/lobster/services/data_management/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_management
2026-01-07T20:31:28,547   copying build/lib/lobster/services/data_management/modality_management_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_management
2026-01-07T20:31:28,550   creating build/bdist.linux-armv7l/wheel/lobster/services/orchestration
2026-01-07T20:31:28,550   copying build/lib/lobster/services/orchestration/publication_processing_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/orchestration
2026-01-07T20:31:28,554   copying build/lib/lobster/services/orchestration/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/orchestration
2026-01-07T20:31:28,556   creating build/bdist.linux-armv7l/wheel/lobster/services/analysis
2026-01-07T20:31:28,557   copying build/lib/lobster/services/analysis/structure_analysis_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis
2026-01-07T20:31:28,560   copying build/lib/lobster/services/analysis/pseudobulk_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis
2026-01-07T20:31:28,562   copying build/lib/lobster/services/analysis/enhanced_singlecell_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis
2026-01-07T20:31:28,566   copying build/lib/lobster/services/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis
2026-01-07T20:31:28,568   copying build/lib/lobster/services/analysis/bulk_rnaseq_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis
2026-01-07T20:31:28,572   copying build/lib/lobster/services/analysis/differential_formula_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis
2026-01-07T20:31:28,575   copying build/lib/lobster/services/analysis/scvi_embedding_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis
2026-01-07T20:31:28,578   copying build/lib/lobster/services/analysis/clustering_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis
2026-01-07T20:31:28,583   creating build/bdist.linux-armv7l/wheel/lobster/services/execution
2026-01-07T20:31:28,584   copying build/lib/lobster/services/execution/custom_code_execution_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/execution
2026-01-07T20:31:28,587   copying build/lib/lobster/services/execution/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/execution
2026-01-07T20:31:28,589   copying build/lib/lobster/services/execution/execution_context_builder.py -> build/bdist.linux-armv7l/wheel/./lobster/services/execution
2026-01-07T20:31:28,592   creating build/bdist.linux-armv7l/wheel/lobster/services/data_access
2026-01-07T20:31:28,593   creating build/bdist.linux-armv7l/wheel/lobster/services/data_access/geo
2026-01-07T20:31:28,595   creating build/bdist.linux-armv7l/wheel/lobster/services/data_access/geo/metadata
2026-01-07T20:31:28,596   copying build/lib/lobster/services/data_access/geo/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo/metadata
2026-01-07T20:31:28,598   copying build/lib/lobster/services/data_access/geo/strategy.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo
2026-01-07T20:31:28,601   copying build/lib/lobster/services/data_access/geo/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo
2026-01-07T20:31:28,602   copying build/lib/lobster/services/data_access/geo/facade.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo
2026-01-07T20:31:28,605   creating build/bdist.linux-armv7l/wheel/lobster/services/data_access/geo/sample
2026-01-07T20:31:28,606   copying build/lib/lobster/services/data_access/geo/sample/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo/sample
2026-01-07T20:31:28,609   creating build/bdist.linux-armv7l/wheel/lobster/services/data_access/geo/utils
2026-01-07T20:31:28,610   copying build/lib/lobster/services/data_access/geo/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo/utils
2026-01-07T20:31:28,612   copying build/lib/lobster/services/data_access/geo/downloader.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo
2026-01-07T20:31:28,615   copying build/lib/lobster/services/data_access/geo/constants.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo
2026-01-07T20:31:28,617   copying build/lib/lobster/services/data_access/geo/parser.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo
2026-01-07T20:31:28,621   creating build/bdist.linux-armv7l/wheel/lobster/services/data_access/geo/loaders
2026-01-07T20:31:28,622   copying build/lib/lobster/services/data_access/geo/loaders/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo/loaders
2026-01-07T20:31:28,625   copying build/lib/lobster/services/data_access/geo/loaders/tenx.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo/loaders
2026-01-07T20:31:28,628   copying build/lib/lobster/services/data_access/content_access_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access
2026-01-07T20:31:28,632   copying build/lib/lobster/services/data_access/protein_structure_fetch_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access
2026-01-07T20:31:28,634   copying build/lib/lobster/services/data_access/geo_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access
2026-01-07T20:31:28,641   copying build/lib/lobster/services/data_access/sra_download_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access
2026-01-07T20:31:28,644   copying build/lib/lobster/services/data_access/pride_download_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access
2026-01-07T20:31:28,647   copying build/lib/lobster/services/data_access/geo_fallback_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access
2026-01-07T20:31:28,650   copying build/lib/lobster/services/data_access/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access
2026-01-07T20:31:28,652   copying build/lib/lobster/services/data_access/docling_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access
2026-01-07T20:31:28,655   copying build/lib/lobster/services/data_access/workspace_content_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access
2026-01-07T20:31:28,658   copying build/lib/lobster/services/data_access/geo_download_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access
2026-01-07T20:31:28,661   copying build/lib/lobster/services/data_access/massive_download_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access
2026-01-07T20:31:28,664   creating build/bdist.linux-armv7l/wheel/lobster/agents
2026-01-07T20:31:28,666   creating build/bdist.linux-armv7l/wheel/lobster/agents/archive
2026-01-07T20:31:28,667   copying build/lib/lobster/agents/archive/research_agent_assistant.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/archive
2026-01-07T20:31:28,670   copying build/lib/lobster/agents/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/agents
2026-01-07T20:31:28,672   copying build/lib/lobster/agents/data_expert.py -> build/bdist.linux-armv7l/wheel/./lobster/agents
2026-01-07T20:31:28,676   copying build/lib/lobster/agents/draw_graph.py -> build/bdist.linux-armv7l/wheel/./lobster/agents
2026-01-07T20:31:28,678   creating build/bdist.linux-armv7l/wheel/lobster/agents/proteomics
2026-01-07T20:31:28,680   copying build/lib/lobster/agents/proteomics/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/proteomics
2026-01-07T20:31:28,681   copying build/lib/lobster/agents/proteomics/state.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/proteomics
2026-01-07T20:31:28,684   creating build/bdist.linux-armv7l/wheel/lobster/agents/transcriptomics
2026-01-07T20:31:28,685   copying build/lib/lobster/agents/transcriptomics/shared_tools.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics
2026-01-07T20:31:28,688   copying build/lib/lobster/agents/transcriptomics/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics
2026-01-07T20:31:28,690   copying build/lib/lobster/agents/transcriptomics/de_analysis_expert.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics
2026-01-07T20:31:28,693   copying build/lib/lobster/agents/transcriptomics/transcriptomics_expert.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics
2026-01-07T20:31:28,697   copying build/lib/lobster/agents/transcriptomics/annotation_expert.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics
2026-01-07T20:31:28,700   copying build/lib/lobster/agents/transcriptomics/state.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics
2026-01-07T20:31:28,702   copying build/lib/lobster/agents/visualization_expert.py -> build/bdist.linux-armv7l/wheel/./lobster/agents
2026-01-07T20:31:28,705   copying build/lib/lobster/agents/data_expert_assistant.py -> build/bdist.linux-armv7l/wheel/./lobster/agents
2026-01-07T20:31:28,708   copying build/lib/lobster/agents/supervisor.py -> build/bdist.linux-armv7l/wheel/./lobster/agents
2026-01-07T20:31:28,711   copying build/lib/lobster/agents/graph.py -> build/bdist.linux-armv7l/wheel/./lobster/agents
2026-01-07T20:31:28,714   copying build/lib/lobster/agents/state.py -> build/bdist.linux-armv7l/wheel/./lobster/agents
2026-01-07T20:31:28,717   creating build/bdist.linux-armv7l/wheel/lobster/agents/langgraph_supervisor
2026-01-07T20:31:28,718   copying build/lib/lobster/agents/langgraph_supervisor/agent_name.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/langgraph_supervisor
2026-01-07T20:31:28,720   copying build/lib/lobster/agents/langgraph_supervisor/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/langgraph_supervisor
2026-01-07T20:31:28,722   copying build/lib/lobster/agents/langgraph_supervisor/handoff.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/langgraph_supervisor
2026-01-07T20:31:28,724   copying build/lib/lobster/agents/langgraph_supervisor/supervisor.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/langgraph_supervisor
2026-01-07T20:31:28,727   copying build/lib/lobster/agents/research_agent.py -> build/bdist.linux-armv7l/wheel/./lobster/agents
2026-01-07T20:31:28,733   creating build/bdist.linux-armv7l/wheel/lobster/cli_internal
2026-01-07T20:31:28,734   copying build/lib/lobster/cli_internal/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal
2026-01-07T20:31:28,737   creating build/bdist.linux-armv7l/wheel/lobster/cli_internal/utils
2026-01-07T20:31:28,738   copying build/lib/lobster/cli_internal/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/utils
2026-01-07T20:31:28,740   copying build/lib/lobster/cli_internal/utils/path_resolution.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/utils
2026-01-07T20:31:28,743   creating build/bdist.linux-armv7l/wheel/lobster/cli_internal/commands
2026-01-07T20:31:28,744   copying build/lib/lobster/cli_internal/commands/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands
2026-01-07T20:31:28,746   copying build/lib/lobster/cli_internal/commands/output_adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands
2026-01-07T20:31:28,749   creating build/bdist.linux-armv7l/wheel/lobster/cli_internal/commands/light
2026-01-07T20:31:28,750   copying build/lib/lobster/cli_internal/commands/light/config_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light
2026-01-07T20:31:28,754   copying build/lib/lobster/cli_internal/commands/light/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light
2026-01-07T20:31:28,756   copying build/lib/lobster/cli_internal/commands/light/pipeline_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light
2026-01-07T20:31:28,759   copying build/lib/lobster/cli_internal/commands/light/workspace_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light
2026-01-07T20:31:28,762   copying build/lib/lobster/cli_internal/commands/light/file_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light
2026-01-07T20:31:28,765   copying build/lib/lobster/cli_internal/commands/light/queue_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light
2026-01-07T20:31:28,768   copying build/lib/lobster/cli_internal/commands/light/metadata_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light
2026-01-07T20:31:28,771   creating build/bdist.linux-armv7l/wheel/lobster/cli_internal/commands/heavy
2026-01-07T20:31:28,772   copying build/lib/lobster/cli_internal/commands/heavy/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/heavy
2026-01-07T20:31:28,775   copying build/lib/lobster/cli_internal/commands/heavy/visualization_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/heavy
2026-01-07T20:31:28,777   copying build/lib/lobster/cli_internal/commands/heavy/modality_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/heavy
2026-01-07T20:31:28,780   copying build/lib/lobster/cli_internal/commands/heavy/data_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/heavy
2026-01-07T20:31:28,782   creating build/bdist.linux-armv7l/wheel/lobster/ui
2026-01-07T20:31:28,783   copying build/lib/lobster/ui/commands.py -> build/bdist.linux-armv7l/wheel/./lobster/ui
2026-01-07T20:31:28,787   creating build/bdist.linux-armv7l/wheel/lobster/ui/components
2026-01-07T20:31:28,788   copying build/lib/lobster/ui/components/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/components
2026-01-07T20:31:28,790   copying build/lib/lobster/ui/components/multi_progress.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/components
2026-01-07T20:31:28,792   copying build/lib/lobster/ui/components/status_display.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/components
2026-01-07T20:31:28,795   copying build/lib/lobster/ui/components/file_tree.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/components
2026-01-07T20:31:28,798   copying build/lib/lobster/ui/components/parallel_workers_progress.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/components
2026-01-07T20:31:28,801   copying build/lib/lobster/ui/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui
2026-01-07T20:31:28,802   copying build/lib/lobster/ui/live_dashboard.py -> build/bdist.linux-armv7l/wheel/./lobster/ui
2026-01-07T20:31:28,805   copying build/lib/lobster/ui/progress_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/ui
2026-01-07T20:31:28,809   creating build/bdist.linux-armv7l/wheel/lobster/ui/callbacks
2026-01-07T20:31:28,810   copying build/lib/lobster/ui/callbacks/textual_callback.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/callbacks
2026-01-07T20:31:28,813   copying build/lib/lobster/ui/callbacks/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/callbacks
2026-01-07T20:31:28,815   creating build/bdist.linux-armv7l/wheel/lobster/ui/screens
2026-01-07T20:31:28,816   copying build/lib/lobster/ui/screens/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/screens
2026-01-07T20:31:28,819   copying build/lib/lobster/ui/screens/analysis_screen.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/screens
2026-01-07T20:31:28,823   creating build/bdist.linux-armv7l/wheel/lobster/ui/formatters
2026-01-07T20:31:28,825   copying build/lib/lobster/ui/formatters/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/formatters
2026-01-07T20:31:28,829   creating build/bdist.linux-armv7l/wheel/lobster/ui/services
2026-01-07T20:31:28,830   copying build/lib/lobster/ui/services/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/services
2026-01-07T20:31:28,833   copying build/lib/lobster/ui/services/error_service.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/services
2026-01-07T20:31:28,836   copying build/lib/lobster/ui/os_app.py -> build/bdist.linux-armv7l/wheel/./lobster/ui
2026-01-07T20:31:28,838   copying build/lib/lobster/ui/console_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/ui
2026-01-07T20:31:28,842   copying build/lib/lobster/ui/themes.py -> build/bdist.linux-armv7l/wheel/./lobster/ui
2026-01-07T20:31:28,845   creating build/bdist.linux-armv7l/wheel/lobster/ui/widgets
2026-01-07T20:31:28,847   copying build/lib/lobster/ui/widgets/connections_panel.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets
2026-01-07T20:31:28,850   copying build/lib/lobster/ui/widgets/error_modal.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets
2026-01-07T20:31:28,853   copying build/lib/lobster/ui/widgets/adapters_panel.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets
2026-01-07T20:31:28,857   copying build/lib/lobster/ui/widgets/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets
2026-01-07T20:31:28,859   copying build/lib/lobster/ui/widgets/data_hub.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets
2026-01-07T20:31:28,862   copying build/lib/lobster/ui/widgets/queue_status_bar.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets
2026-01-07T20:31:28,865   copying build/lib/lobster/ui/widgets/chat_message.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets
2026-01-07T20:31:28,868   copying build/lib/lobster/ui/widgets/query_prompt.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets
2026-01-07T20:31:28,871   copying build/lib/lobster/ui/widgets/token_usage_panel.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets
2026-01-07T20:31:28,874   copying build/lib/lobster/ui/widgets/activity_log.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets
2026-01-07T20:31:28,877   copying build/lib/lobster/ui/widgets/system_info.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets
2026-01-07T20:31:28,879   copying build/lib/lobster/ui/widgets/status_bar.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets
2026-01-07T20:31:28,883   copying build/lib/lobster/ui/widgets/agents_panel.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets
2026-01-07T20:31:28,886   copying build/lib/lobster/ui/widgets/results_display.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets
2026-01-07T20:31:28,888   copying build/lib/lobster/ui/widgets/queue_panel.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets
2026-01-07T20:31:28,891   copying build/lib/lobster/ui/widgets/modality_list.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets
2026-01-07T20:31:28,894   copying build/lib/lobster/ui/widgets/plot_preview.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets
2026-01-07T20:31:28,898   creating build/bdist.linux-armv7l/wheel/lobster/tools
2026-01-07T20:31:28,900   creating build/bdist.linux-armv7l/wheel/lobster/tools/archive
2026-01-07T20:31:28,902   copying build/lib/lobster/tools/archive/unified_content_service.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/archive
2026-01-07T20:31:28,906   copying build/lib/lobster/tools/archive/publication_service.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/archive
2026-01-07T20:31:28,909   copying build/lib/lobster/tools/geo_downloader.py -> build/bdist.linux-armv7l/wheel/./lobster/tools
2026-01-07T20:31:28,912   copying build/lib/lobster/tools/enhanced_handoff_tool.py -> build/bdist.linux-armv7l/wheel/./lobster/tools
2026-01-07T20:31:28,918   copying build/lib/lobster/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/tools
2026-01-07T20:31:28,921   copying build/lib/lobster/tools/workspace_tool.py -> build/bdist.linux-armv7l/wheel/./lobster/tools
2026-01-07T20:31:28,929   copying build/lib/lobster/tools/pipeline_strategy.py -> build/bdist.linux-armv7l/wheel/./lobster/tools
2026-01-07T20:31:28,933   copying build/lib/lobster/tools/handoff_tool.py -> build/bdist.linux-armv7l/wheel/./lobster/tools
2026-01-07T20:31:28,937   copying build/lib/lobster/tools/download_orchestrator.py -> build/bdist.linux-armv7l/wheel/./lobster/tools
2026-01-07T20:31:28,940   copying build/lib/lobster/tools/geo_parser.py -> build/bdist.linux-armv7l/wheel/./lobster/tools
2026-01-07T20:31:28,943   creating build/bdist.linux-armv7l/wheel/lobster/tools/providers
2026-01-07T20:31:28,944   copying build/lib/lobster/tools/providers/structure_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers
2026-01-07T20:31:28,946   copying build/lib/lobster/tools/providers/base_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers
2026-01-07T20:31:28,949   copying build/lib/lobster/tools/providers/pmc_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers
2026-01-07T20:31:28,957   copying build/lib/lobster/tools/providers/webpage_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers
2026-01-07T20:31:28,961   copying build/lib/lobster/tools/providers/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers
2026-01-07T20:31:28,963   copying build/lib/lobster/tools/providers/organism_enum.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers
2026-01-07T20:31:28,967   copying build/lib/lobster/tools/providers/abstract_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers
2026-01-07T20:31:28,970   copying build/lib/lobster/tools/providers/massive_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers
2026-01-07T20:31:28,974   copying build/lib/lobster/tools/providers/provider_registry.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers
2026-01-07T20:31:28,977   copying build/lib/lobster/tools/providers/pdb_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers
2026-01-07T20:31:28,980   copying build/lib/lobster/tools/providers/pride_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers
2026-01-07T20:31:28,985   copying build/lib/lobster/tools/providers/geo_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers
2026-01-07T20:31:28,988   copying build/lib/lobster/tools/providers/biorxiv_medrxiv_config.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers
2026-01-07T20:31:28,991   copying build/lib/lobster/tools/providers/sra_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers
2026-01-07T20:31:28,995   copying build/lib/lobster/tools/providers/biorxiv_medrxiv_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers
2026-01-07T20:31:28,999   copying build/lib/lobster/tools/providers/ncbi_query_builder.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers
2026-01-07T20:31:29,002   copying build/lib/lobster/tools/providers/publication_resolver.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers
2026-01-07T20:31:29,006   copying build/lib/lobster/tools/providers/pubmed_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers
2026-01-07T20:31:29,064   copying build/lib/lobster/tools/providers/geo_utils.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers
2026-01-07T20:31:29,067   copying build/lib/lobster/tools/providers/pride_normalizer.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers
2026-01-07T20:31:29,070   copying build/lib/lobster/tools/providers/biopython_entrez_wrapper.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers
2026-01-07T20:31:29,073   copying build/lib/lobster/tools/gpu_detector.py -> build/bdist.linux-armv7l/wheel/./lobster/tools
2026-01-07T20:31:29,075   copying build/lib/lobster/tools/rate_limiter.py -> build/bdist.linux-armv7l/wheel/./lobster/tools
2026-01-07T20:31:29,079   copying build/lib/lobster/tools/todo_tools.py -> build/bdist.linux-armv7l/wheel/./lobster/tools
2026-01-07T20:31:29,082   copying build/lib/lobster/tools/url_transforms.py -> build/bdist.linux-armv7l/wheel/./lobster/tools
2026-01-07T20:31:29,085   copying build/lib/lobster/tools/expert_handoff_patterns.py -> build/bdist.linux-armv7l/wheel/./lobster/tools
2026-01-07T20:31:29,089   copying build/lib/lobster/tools/expert_handoff_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/tools
2026-01-07T20:31:29,092   copying build/lib/lobster/tools/workflow_tracker.py -> build/bdist.linux-armv7l/wheel/./lobster/tools
2026-01-07T20:31:29,095   copying build/lib/lobster/tools/custom_code_tool.py -> build/bdist.linux-armv7l/wheel/./lobster/tools
2026-01-07T20:31:29,098   running install_egg_info
2026-01-07T20:31:29,104   Copying lobster_ai.egg-info to build/bdist.linux-armv7l/wheel/./lobster_ai-0.4.1.6-py3.11.egg-info
2026-01-07T20:31:29,121   running install_scripts
2026-01-07T20:31:29,137   creating build/bdist.linux-armv7l/wheel/lobster_ai-0.4.1.6.dist-info/WHEEL
2026-01-07T20:31:29,140   creating '/tmp/pip-wheel-g5iy9ykr/.tmp-7qi_yfx2/lobster_ai-0.4.1.6-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-01-07T20:31:29,143   adding 'lobster/__main__.py'
2026-01-07T20:31:29,144   adding 'lobster/_version.py'
2026-01-07T20:31:29,171   adding 'lobster/cli.py'
2026-01-07T20:31:29,175   adding 'lobster/main.py'
2026-01-07T20:31:29,176   adding 'lobster/version.py'
2026-01-07T20:31:29,179   adding 'lobster/agents/__init__.py'
2026-01-07T20:31:29,186   adding 'lobster/agents/data_expert.py'
2026-01-07T20:31:29,191   adding 'lobster/agents/data_expert_assistant.py'
2026-01-07T20:31:29,192   adding 'lobster/agents/draw_graph.py'
2026-01-07T20:31:29,195   adding 'lobster/agents/graph.py'
2026-01-07T20:31:29,209   adding 'lobster/agents/research_agent.py'
2026-01-07T20:31:29,213   adding 'lobster/agents/state.py'
2026-01-07T20:31:29,217   adding 'lobster/agents/supervisor.py'
2026-01-07T20:31:29,221   adding 'lobster/agents/visualization_expert.py'
2026-01-07T20:31:29,224   adding 'lobster/agents/archive/research_agent_assistant.py'
2026-01-07T20:31:29,226   adding 'lobster/agents/langgraph_supervisor/__init__.py'
2026-01-07T20:31:29,228   adding 'lobster/agents/langgraph_supervisor/agent_name.py'
2026-01-07T20:31:29,230   adding 'lobster/agents/langgraph_supervisor/handoff.py'
2026-01-07T20:31:29,233   adding 'lobster/agents/langgraph_supervisor/supervisor.py'
2026-01-07T20:31:29,235   adding 'lobster/agents/proteomics/__init__.py'
2026-01-07T20:31:29,236   adding 'lobster/agents/proteomics/state.py'
2026-01-07T20:31:29,238   adding 'lobster/agents/transcriptomics/__init__.py'
2026-01-07T20:31:29,243   adding 'lobster/agents/transcriptomics/annotation_expert.py'
2026-01-07T20:31:29,252   adding 'lobster/agents/transcriptomics/de_analysis_expert.py'
2026-01-07T20:31:29,257   adding 'lobster/agents/transcriptomics/shared_tools.py'
2026-01-07T20:31:29,259   adding 'lobster/agents/transcriptomics/state.py'
2026-01-07T20:31:29,264   adding 'lobster/agents/transcriptomics/transcriptomics_expert.py'
2026-01-07T20:31:29,267   adding 'lobster/cli_internal/__init__.py'
2026-01-07T20:31:29,269   adding 'lobster/cli_internal/commands/__init__.py'
2026-01-07T20:31:29,271   adding 'lobster/cli_internal/commands/output_adapter.py'
2026-01-07T20:31:29,274   adding 'lobster/cli_internal/commands/heavy/__init__.py'
2026-01-07T20:31:29,276   adding 'lobster/cli_internal/commands/heavy/data_commands.py'
2026-01-07T20:31:29,279   adding 'lobster/cli_internal/commands/heavy/modality_commands.py'
2026-01-07T20:31:29,282   adding 'lobster/cli_internal/commands/heavy/visualization_commands.py'
2026-01-07T20:31:29,285   adding 'lobster/cli_internal/commands/light/__init__.py'
2026-01-07T20:31:29,288   adding 'lobster/cli_internal/commands/light/config_commands.py'
2026-01-07T20:31:29,292   adding 'lobster/cli_internal/commands/light/file_commands.py'
2026-01-07T20:31:29,294   adding 'lobster/cli_internal/commands/light/metadata_commands.py'
2026-01-07T20:31:29,297   adding 'lobster/cli_internal/commands/light/pipeline_commands.py'
2026-01-07T20:31:29,300   adding 'lobster/cli_internal/commands/light/queue_commands.py'
2026-01-07T20:31:29,303   adding 'lobster/cli_internal/commands/light/workspace_commands.py'
2026-01-07T20:31:29,305   adding 'lobster/cli_internal/utils/__init__.py'
2026-01-07T20:31:29,307   adding 'lobster/cli_internal/utils/path_resolution.py'
2026-01-07T20:31:29,309   adding 'lobster/config/__init__.py'
2026-01-07T20:31:29,311   adding 'lobster/config/agent_capabilities.py'
2026-01-07T20:31:29,314   adding 'lobster/config/agent_config.py'
2026-01-07T20:31:29,316   adding 'lobster/config/agent_registry.py'
2026-01-07T20:31:29,318   adding 'lobster/config/base_config.py'
2026-01-07T20:31:29,320   adding 'lobster/config/config_manager.py'
2026-01-07T20:31:29,321   adding 'lobster/config/constants.py'
2026-01-07T20:31:29,323   adding 'lobster/config/global_config.py'
2026-01-07T20:31:29,325   adding 'lobster/config/llm_factory.py'
2026-01-07T20:31:29,327   adding 'lobster/config/model_service.py'
2026-01-07T20:31:29,329   adding 'lobster/config/ollama_service.py'
2026-01-07T20:31:29,331   adding 'lobster/config/provider_setup.py'
2026-01-07T20:31:29,334   adding 'lobster/config/settings.py'
2026-01-07T20:31:29,336   adding 'lobster/config/subscription_tiers.py'
2026-01-07T20:31:29,338   adding 'lobster/config/supervisor_config.py'
2026-01-07T20:31:29,340   adding 'lobster/config/workspace_config.py'
2026-01-07T20:31:29,343   adding 'lobster/config/providers/__init__.py'
2026-01-07T20:31:29,345   adding 'lobster/config/providers/anthropic_provider.py'
2026-01-07T20:31:29,347   adding 'lobster/config/providers/base_provider.py'
2026-01-07T20:31:29,350   adding 'lobster/config/providers/bedrock_provider.py'
2026-01-07T20:31:29,352   adding 'lobster/config/providers/gemini_provider.py'
2026-01-07T20:31:29,356   adding 'lobster/config/providers/ollama_provider.py'
2026-01-07T20:31:29,358   adding 'lobster/config/providers/registry.py'
2026-01-07T20:31:29,363   adding 'lobster/core/__init__.py'
2026-01-07T20:31:29,366   adding 'lobster/core/analysis_ir.py'
2026-01-07T20:31:29,370   adding 'lobster/core/archive_utils.py'
2026-01-07T20:31:29,380   adding 'lobster/core/client.py'
2026-01-07T20:31:29,384   adding 'lobster/core/component_registry.py'
2026-01-07T20:31:29,387   adding 'lobster/core/config_resolver.py'
2026-01-07T20:31:29,401   adding 'lobster/core/data_manager_v2.py'
2026-01-07T20:31:29,404   adding 'lobster/core/download_queue.py'
2026-01-07T20:31:29,406   adding 'lobster/core/exceptions.py'
2026-01-07T20:31:29,408   adding 'lobster/core/ir_coverage.py'
2026-01-07T20:31:29,411   adding 'lobster/core/license_manager.py'
2026-01-07T20:31:29,414   adding 'lobster/core/notebook_executor.py'
2026-01-07T20:31:29,418   adding 'lobster/core/notebook_exporter.py'
2026-01-07T20:31:29,420   adding 'lobster/core/notebook_validator.py'
2026-01-07T20:31:29,424   adding 'lobster/core/plot_manager.py'
2026-01-07T20:31:29,426   adding 'lobster/core/plugin_loader.py'
2026-01-07T20:31:29,429   adding 'lobster/core/provenance.py'
2026-01-07T20:31:29,432   adding 'lobster/core/publication_queue.py'
2026-01-07T20:31:29,434   adding 'lobster/core/queue_storage.py'
2026-01-07T20:31:29,438   adding 'lobster/core/ris_parser.py'
2026-01-07T20:31:29,440   adding 'lobster/core/workspace.py'
2026-01-07T20:31:29,443   adding 'lobster/core/adapters/__init__.py'
2026-01-07T20:31:29,447   adding 'lobster/core/adapters/base.py'
2026-01-07T20:31:29,450   adding 'lobster/core/adapters/protein_structure_adapter.py'
2026-01-07T20:31:29,455   adding 'lobster/core/adapters/proteomics_adapter.py'
2026-01-07T20:31:29,459   adding 'lobster/core/adapters/pseudobulk_adapter.py'
2026-01-07T20:31:29,463   adding 'lobster/core/adapters/transcriptomics_adapter.py'
2026-01-07T20:31:29,466   adding 'lobster/core/backends/__init__.py'
2026-01-07T20:31:29,468   adding 'lobster/core/backends/base.py'
2026-01-07T20:31:29,472   adding 'lobster/core/backends/h5ad_backend.py'
2026-01-07T20:31:29,474   adding 'lobster/core/backends/mudata_backend.py'
2026-01-07T20:31:29,476   adding 'lobster/core/identifiers/__init__.py'
2026-01-07T20:31:29,479   adding 'lobster/core/identifiers/accession_resolver.py'
2026-01-07T20:31:29,481   adding 'lobster/core/interfaces/__init__.py'
2026-01-07T20:31:29,483   adding 'lobster/core/interfaces/adapter.py'
2026-01-07T20:31:29,484   adding 'lobster/core/interfaces/backend.py'
2026-01-07T20:31:29,486   adding 'lobster/core/interfaces/base_client.py'
2026-01-07T20:31:29,488   adding 'lobster/core/interfaces/download_service.py'
2026-01-07T20:31:29,490   adding 'lobster/core/interfaces/validator.py'
2026-01-07T20:31:29,492   adding 'lobster/core/schemas/__init__.py'
2026-01-07T20:31:29,495   adding 'lobster/core/schemas/database_mappings.py'
2026-01-07T20:31:29,497   adding 'lobster/core/schemas/database_registry.py'
2026-01-07T20:31:29,499   adding 'lobster/core/schemas/download_queue.py'
2026-01-07T20:31:29,501   adding 'lobster/core/schemas/download_urls.py'
2026-01-07T20:31:29,506   adding 'lobster/core/schemas/export_schemas.py'
2026-01-07T20:31:29,511   adding 'lobster/core/schemas/metabolomics.py'
2026-01-07T20:31:29,518   adding 'lobster/core/schemas/metagenomics.py'
2026-01-07T20:31:29,521   adding 'lobster/core/schemas/protein_structure.py'
2026-01-07T20:31:29,525   adding 'lobster/core/schemas/proteomics.py'
2026-01-07T20:31:29,528   adding 'lobster/core/schemas/publication_queue.py'
2026-01-07T20:31:29,532   adding 'lobster/core/schemas/sra.py'
2026-01-07T20:31:29,539   adding 'lobster/core/schemas/transcriptomics.py'
2026-01-07T20:31:29,542   adding 'lobster/core/schemas/validation.py'
2026-01-07T20:31:29,544   adding 'lobster/core/utils/__init__.py'
2026-01-07T20:31:29,546   adding 'lobster/core/utils/h5ad_utils.py'
2026-01-07T20:31:29,548   adding 'lobster/lobster_cloud/__init__.py'
2026-01-07T20:31:29,550   adding 'lobster/lobster_cloud/client.py'
2026-01-07T20:31:29,553   adding 'lobster/services/__init__.py'
2026-01-07T20:31:29,555   adding 'lobster/services/analysis/__init__.py'
2026-01-07T20:31:29,564   adding 'lobster/services/analysis/bulk_rnaseq_service.py'
2026-01-07T20:31:29,573   adding 'lobster/services/analysis/clustering_service.py'
2026-01-07T20:31:29,578   adding 'lobster/services/analysis/differential_formula_service.py'
2026-01-07T20:31:29,584   adding 'lobster/services/analysis/enhanced_singlecell_service.py'
2026-01-07T20:31:29,587   adding 'lobster/services/analysis/pseudobulk_service.py'
2026-01-07T20:31:29,590   adding 'lobster/services/analysis/scvi_embedding_service.py'
2026-01-07T20:31:29,592   adding 'lobster/services/analysis/structure_analysis_service.py'
2026-01-07T20:31:29,594   adding 'lobster/services/data_access/__init__.py'
2026-01-07T20:31:29,602   adding 'lobster/services/data_access/content_access_service.py'
2026-01-07T20:31:29,608   adding 'lobster/services/data_access/docling_service.py'
2026-01-07T20:31:29,612   adding 'lobster/services/data_access/geo_download_service.py'
2026-01-07T20:31:29,615   adding 'lobster/services/data_access/geo_fallback_service.py'
2026-01-07T20:31:29,644   adding 'lobster/services/data_access/geo_service.py'
2026-01-07T20:31:29,650   adding 'lobster/services/data_access/massive_download_service.py'
2026-01-07T20:31:29,653   adding 'lobster/services/data_access/pride_download_service.py'
2026-01-07T20:31:29,657   adding 'lobster/services/data_access/protein_structure_fetch_service.py'
2026-01-07T20:31:29,664   adding 'lobster/services/data_access/sra_download_service.py'
2026-01-07T20:31:29,671   adding 'lobster/services/data_access/workspace_content_service.py'
2026-01-07T20:31:29,673   adding 'lobster/services/data_access/geo/__init__.py'
2026-01-07T20:31:29,675   adding 'lobster/services/data_access/geo/constants.py'
2026-01-07T20:31:29,681   adding 'lobster/services/data_access/geo/downloader.py'
2026-01-07T20:31:29,683   adding 'lobster/services/data_access/geo/facade.py'
2026-01-07T20:31:29,694   adding 'lobster/services/data_access/geo/parser.py'
2026-01-07T20:31:29,698   adding 'lobster/services/data_access/geo/strategy.py'
2026-01-07T20:31:29,700   adding 'lobster/services/data_access/geo/loaders/__init__.py'
2026-01-07T20:31:29,703   adding 'lobster/services/data_access/geo/loaders/tenx.py'
2026-01-07T20:31:29,706   adding 'lobster/services/data_access/geo/metadata/__init__.py'
2026-01-07T20:31:29,708   adding 'lobster/services/data_access/geo/sample/__init__.py'
2026-01-07T20:31:29,710   adding 'lobster/services/data_access/geo/utils/__init__.py'
2026-01-07T20:31:29,712   adding 'lobster/services/data_management/__init__.py'
2026-01-07T20:31:29,719   adding 'lobster/services/data_management/concatenation_service.py'
2026-01-07T20:31:29,723   adding 'lobster/services/data_management/modality_management_service.py'
2026-01-07T20:31:29,725   adding 'lobster/services/execution/__init__.py'
2026-01-07T20:31:29,730   adding 'lobster/services/execution/custom_code_execution_service.py'
2026-01-07T20:31:29,732   adding 'lobster/services/execution/execution_context_builder.py'
2026-01-07T20:31:29,734   adding 'lobster/services/metadata/__init__.py'
2026-01-07T20:31:29,736   adding 'lobster/services/metadata/identifier_provenance_service.py'
2026-01-07T20:31:29,740   adding 'lobster/services/metadata/manual_annotation_service.py'
2026-01-07T20:31:29,743   adding 'lobster/services/metadata/metadata_standardization_service.py'
2026-01-07T20:31:29,746   adding 'lobster/services/metadata/metadata_validation_service.py'
2026-01-07T20:31:29,748   adding 'lobster/services/metadata/sample_grouping_service.py'
2026-01-07T20:31:29,750   adding 'lobster/services/metadata/protocol_extraction/__init__.py'
2026-01-07T20:31:29,752   adding 'lobster/services/metadata/protocol_extraction/base.py'
2026-01-07T20:31:29,753   adding 'lobster/services/metadata/protocol_extraction/amplicon/__init__.py'
2026-01-07T20:31:29,755   adding 'lobster/services/metadata/protocol_extraction/amplicon/details.py'
2026-01-07T20:31:29,758   adding 'lobster/services/metadata/protocol_extraction/amplicon/service.py'
2026-01-07T20:31:29,760   adding 'lobster/services/metadata/protocol_extraction/amplicon/resources/primers.json'
2026-01-07T20:31:29,762   adding 'lobster/services/metadata/protocol_extraction/mass_spec/__init__.py'
2026-01-07T20:31:29,764   adding 'lobster/services/metadata/protocol_extraction/mass_spec/details.py'
2026-01-07T20:31:29,765   adding 'lobster/services/metadata/protocol_extraction/mass_spec/service.py'
2026-01-07T20:31:29,767   adding 'lobster/services/metadata/protocol_extraction/rnaseq/__init__.py'
2026-01-07T20:31:29,768   adding 'lobster/services/metadata/protocol_extraction/rnaseq/details.py'
2026-01-07T20:31:29,770   adding 'lobster/services/metadata/protocol_extraction/rnaseq/service.py'
2026-01-07T20:31:29,771   adding 'lobster/services/ml/__init__.py'
2026-01-07T20:31:29,773   adding 'lobster/services/orchestration/__init__.py'
2026-01-07T20:31:29,781   adding 'lobster/services/orchestration/publication_processing_service.py'
2026-01-07T20:31:29,783   adding 'lobster/services/quality/__init__.py'
2026-01-07T20:31:29,788   adding 'lobster/services/quality/preprocessing_service.py'
2026-01-07T20:31:29,792   adding 'lobster/services/quality/quality_service.py'
2026-01-07T20:31:29,794   adding 'lobster/services/templates/__init__.py'
2026-01-07T20:31:29,798   adding 'lobster/services/templates/annotation_templates.py'
2026-01-07T20:31:29,800   adding 'lobster/services/visualization/__init__.py'
2026-01-07T20:31:29,803   adding 'lobster/services/visualization/bulk_visualization_service.py'
2026-01-07T20:31:29,807   adding 'lobster/services/visualization/pymol_visualization_service.py'
2026-01-07T20:31:29,814   adding 'lobster/services/visualization/visualization_service.py'
2026-01-07T20:31:29,816   adding 'lobster/tools/__init__.py'
2026-01-07T20:31:29,819   adding 'lobster/tools/custom_code_tool.py'
2026-01-07T20:31:29,821   adding 'lobster/tools/download_orchestrator.py'
2026-01-07T20:31:29,824   adding 'lobster/tools/enhanced_handoff_tool.py'
2026-01-07T20:31:29,826   adding 'lobster/tools/expert_handoff_manager.py'
2026-01-07T20:31:29,828   adding 'lobster/tools/expert_handoff_patterns.py'
2026-01-07T20:31:29,829   adding 'lobster/tools/geo_downloader.py'
2026-01-07T20:31:29,830   adding 'lobster/tools/geo_parser.py'
2026-01-07T20:31:29,832   adding 'lobster/tools/gpu_detector.py'
2026-01-07T20:31:29,834   adding 'lobster/tools/handoff_tool.py'
2026-01-07T20:31:29,835   adding 'lobster/tools/pipeline_strategy.py'
2026-01-07T20:31:29,839   adding 'lobster/tools/rate_limiter.py'
2026-01-07T20:31:29,841   adding 'lobster/tools/todo_tools.py'
2026-01-07T20:31:29,842   adding 'lobster/tools/url_transforms.py'
2026-01-07T20:31:29,845   adding 'lobster/tools/workflow_tracker.py'
2026-01-07T20:31:29,857   adding 'lobster/tools/workspace_tool.py'
2026-01-07T20:31:29,861   adding 'lobster/tools/archive/publication_service.py'
2026-01-07T20:31:29,863   adding 'lobster/tools/archive/unified_content_service.py'
2026-01-07T20:31:29,866   adding 'lobster/tools/providers/__init__.py'
2026-01-07T20:31:29,867   adding 'lobster/tools/providers/abstract_provider.py'
2026-01-07T20:31:29,869   adding 'lobster/tools/providers/base_provider.py'
2026-01-07T20:31:29,871   adding 'lobster/tools/providers/biopython_entrez_wrapper.py'
2026-01-07T20:31:29,873   adding 'lobster/tools/providers/biorxiv_medrxiv_config.py'
2026-01-07T20:31:29,878   adding 'lobster/tools/providers/biorxiv_medrxiv_provider.py'
2026-01-07T20:31:29,885   adding 'lobster/tools/providers/geo_provider.py'
2026-01-07T20:31:29,887   adding 'lobster/tools/providers/geo_utils.py'
2026-01-07T20:31:29,890   adding 'lobster/tools/providers/massive_provider.py'
2026-01-07T20:31:29,893   adding 'lobster/tools/providers/ncbi_query_builder.py'
2026-01-07T20:31:29,894   adding 'lobster/tools/providers/organism_enum.py'
2026-01-07T20:31:29,897   adding 'lobster/tools/providers/pdb_provider.py'
2026-01-07T20:31:29,904   adding 'lobster/tools/providers/pmc_provider.py'
2026-01-07T20:31:29,907   adding 'lobster/tools/providers/pride_normalizer.py'
2026-01-07T20:31:29,910   adding 'lobster/tools/providers/pride_provider.py'
2026-01-07T20:31:29,913   adding 'lobster/tools/providers/provider_registry.py'
2026-01-07T20:31:29,916   adding 'lobster/tools/providers/publication_resolver.py'
2026-01-07T20:31:29,925   adding 'lobster/tools/providers/pubmed_provider.py'
2026-01-07T20:31:29,932   adding 'lobster/tools/providers/sra_provider.py'
2026-01-07T20:31:29,934   adding 'lobster/tools/providers/structure_provider.py'
2026-01-07T20:31:29,936   adding 'lobster/tools/providers/webpage_provider.py'
2026-01-07T20:31:29,938   adding 'lobster/ui/__init__.py'
2026-01-07T20:31:29,941   adding 'lobster/ui/commands.py'
2026-01-07T20:31:29,943   adding 'lobster/ui/console_manager.py'
2026-01-07T20:31:29,945   adding 'lobster/ui/live_dashboard.py'
2026-01-07T20:31:29,947   adding 'lobster/ui/os_app.py'
2026-01-07T20:31:29,949   adding 'lobster/ui/progress_manager.py'
2026-01-07T20:31:29,951   adding 'lobster/ui/themes.py'
2026-01-07T20:31:29,953   adding 'lobster/ui/callbacks/__init__.py'
2026-01-07T20:31:29,955   adding 'lobster/ui/callbacks/textual_callback.py'
2026-01-07T20:31:29,957   adding 'lobster/ui/components/__init__.py'
2026-01-07T20:31:29,959   adding 'lobster/ui/components/file_tree.py'
2026-01-07T20:31:29,962   adding 'lobster/ui/components/multi_progress.py'
2026-01-07T20:31:29,964   adding 'lobster/ui/components/parallel_workers_progress.py'
2026-01-07T20:31:29,966   adding 'lobster/ui/components/status_display.py'
2026-01-07T20:31:29,968   adding 'lobster/ui/formatters/__init__.py'
2026-01-07T20:31:29,970   adding 'lobster/ui/screens/__init__.py'
2026-01-07T20:31:29,973   adding 'lobster/ui/screens/analysis_screen.py'
2026-01-07T20:31:29,976   adding 'lobster/ui/services/__init__.py'
2026-01-07T20:31:29,978   adding 'lobster/ui/services/error_service.py'
2026-01-07T20:31:29,980   adding 'lobster/ui/widgets/__init__.py'
2026-01-07T20:31:29,982   adding 'lobster/ui/widgets/activity_log.py'
2026-01-07T20:31:29,984   adding 'lobster/ui/widgets/adapters_panel.py'
2026-01-07T20:31:29,985   adding 'lobster/ui/widgets/agents_panel.py'
2026-01-07T20:31:29,987   adding 'lobster/ui/widgets/chat_message.py'
2026-01-07T20:31:29,988   adding 'lobster/ui/widgets/connections_panel.py'
2026-01-07T20:31:29,991   adding 'lobster/ui/widgets/data_hub.py'
2026-01-07T20:31:29,993   adding 'lobster/ui/widgets/error_modal.py'
2026-01-07T20:31:29,995   adding 'lobster/ui/widgets/modality_list.py'
2026-01-07T20:31:29,996   adding 'lobster/ui/widgets/plot_preview.py'
2026-01-07T20:31:29,997   adding 'lobster/ui/widgets/query_prompt.py'
2026-01-07T20:31:29,999   adding 'lobster/ui/widgets/queue_panel.py'
2026-01-07T20:31:30,000   adding 'lobster/ui/widgets/queue_status_bar.py'
2026-01-07T20:31:30,002   adding 'lobster/ui/widgets/results_display.py'
2026-01-07T20:31:30,003   adding 'lobster/ui/widgets/status_bar.py'
2026-01-07T20:31:30,005   adding 'lobster/ui/widgets/system_info.py'
2026-01-07T20:31:30,007   adding 'lobster/ui/widgets/token_usage_panel.py'
2026-01-07T20:31:30,009   adding 'lobster/utils/__init__.py'
2026-01-07T20:31:30,014   adding 'lobster/utils/callbacks.py'
2026-01-07T20:31:30,016   adding 'lobster/utils/deviance.py'
2026-01-07T20:31:30,018   adding 'lobster/utils/error_handlers.py'
2026-01-07T20:31:30,021   adding 'lobster/utils/file_analyzer.py'
2026-01-07T20:31:30,023   adding 'lobster/utils/file_naming.py'
2026-01-07T20:31:30,024   adding 'lobster/utils/json_extractor.py'
2026-01-07T20:31:30,026   adding 'lobster/utils/logger.py'
2026-01-07T20:31:30,028   adding 'lobster/utils/progress_wrapper.py'
2026-01-07T20:31:30,029   adding 'lobster/utils/ssl_utils.py'
2026-01-07T20:31:30,031   adding 'lobster/utils/system.py'
2026-01-07T20:31:30,038   adding 'lobster_ai-0.4.1.6.dist-info/licenses/LICENSE'
2026-01-07T20:31:30,040   adding 'lobster_ai-0.4.1.6.dist-info/METADATA'
2026-01-07T20:31:30,042   adding 'lobster_ai-0.4.1.6.dist-info/WHEEL'
2026-01-07T20:31:30,042   adding 'lobster_ai-0.4.1.6.dist-info/entry_points.txt'
2026-01-07T20:31:30,043   adding 'lobster_ai-0.4.1.6.dist-info/top_level.txt'
2026-01-07T20:31:30,048   adding 'lobster_ai-0.4.1.6.dist-info/RECORD'
2026-01-07T20:31:30,077   removing build/bdist.linux-armv7l/wheel
2026-01-07T20:31:30,270   Building wheel for lobster-ai (pyproject.toml): finished with status 'done'
2026-01-07T20:31:30,518   Created wheel for lobster-ai: filename=lobster_ai-0.4.1.6-py3-none-any.whl size=1349610 sha256=522f41d19d851d030ee5dedb95a4b19a4748ea44ee54236888916b5e6518048d
2026-01-07T20:31:30,520   Stored in directory: /tmp/pip-ephem-wheel-cache-9q3irs9p/wheels/91/5c/b3/32a18896b1b7999d477c109a4f3a475f1555a38be750171153
2026-01-07T20:31:30,551 Successfully built lobster-ai
2026-01-07T20:31:30,619 Removed build tracker: '/tmp/pip-build-tracker-xxqwxjdt'