2026-01-08T00:56:20,111 Created temporary directory: /tmp/pip-ephem-wheel-cache-01vmtna3 2026-01-08T00:56:20,113 Created temporary directory: /tmp/pip-build-tracker-s6fgs139 2026-01-08T00:56:20,114 Initialized build tracking at /tmp/pip-build-tracker-s6fgs139 2026-01-08T00:56:20,114 Created build tracker: /tmp/pip-build-tracker-s6fgs139 2026-01-08T00:56:20,115 Entered build tracker: /tmp/pip-build-tracker-s6fgs139 2026-01-08T00:56:20,116 Created temporary directory: /tmp/pip-wheel-ggg0sxpp 2026-01-08T00:56:20,119 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-01-08T00:56:20,121 Created temporary directory: /tmp/pip-ephem-wheel-cache-6m7j3qwi 2026-01-08T00:56:20,146 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-01-08T00:56:20,150 2 location(s) to search for versions of lobster-ai: 2026-01-08T00:56:20,150 * https://pypi.org/simple/lobster-ai/ 2026-01-08T00:56:20,150 * https://www.piwheels.org/simple/lobster-ai/ 2026-01-08T00:56:20,151 Fetching project page and analyzing links: https://pypi.org/simple/lobster-ai/ 2026-01-08T00:56:20,152 Getting page https://pypi.org/simple/lobster-ai/ 2026-01-08T00:56:20,153 Found index url https://pypi.org/simple 2026-01-08T00:56:20,519 Fetched page https://pypi.org/simple/lobster-ai/ as application/vnd.pypi.simple.v1+json 2026-01-08T00:56:20,525 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/28/50/4706e55b526417192c7d0734f9300f26cbaa6f3404a258dc5e23932755d8/lobster_ai-0.4.0.7-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T00:56:20,526 Found link https://files.pythonhosted.org/packages/a8/80/ed27ba2c77f7614bf149a697b450c4828da9d56fe5c8d3f0090165bf76fc/lobster_ai-0.4.0.7.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.0.7 2026-01-08T00:56:20,526 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/d6/d8/90aa06db1b87347873b4ce21d57d45a24c7c9a7f357128242401dacf90ee/lobster_ai-0.4.0.8-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T00:56:20,527 Found link https://files.pythonhosted.org/packages/69/86/8a4b462df9a8118f3de7e0685672bda6cb876c8345b4434923a5c5e941ff/lobster_ai-0.4.0.8.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.0.8 2026-01-08T00:56:20,528 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/82/31/78340295ff44b67ccc4c5caaa6719063d7474604cd61fa9262fc35d4d956/lobster_ai-0.4.0.9-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T00:56:20,529 Found link https://files.pythonhosted.org/packages/6f/e1/d7ec868a638125f79b3f450e1ecb1b9e75ed7ba1887b51849531a4b362dc/lobster_ai-0.4.0.9.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.0.9 2026-01-08T00:56:20,530 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/34/e3/df793c9c964fd14f0e798a2b126653fe41689d96f69c0f667eaeaec3b87e/lobster_ai-0.4.1.1-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T00:56:20,531 Found link https://files.pythonhosted.org/packages/3d/08/0884cc34aeec5b95e5d0b58f69dd05ff17ff21a3abfe6a24180066dd8bff/lobster_ai-0.4.1.1.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.1.1 2026-01-08T00:56:20,532 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/dc/16/d16ef722f81cf4491dc14a10a7e1bd220f6e015f7096c449f0b46953eef3/lobster_ai-0.4.1.2-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T00:56:20,533 Found link https://files.pythonhosted.org/packages/26/99/4ba848c11cfd7e2ce9603618c1752cd9a0b6efb80e10057f29cc5f8bcd99/lobster_ai-0.4.1.2.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.1.2 2026-01-08T00:56:20,534 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/c7/1e/4907d9395f6cd0423f68ae362692a305f1667f39cbb14748e2445198c84c/lobster_ai-0.4.1.3-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T00:56:20,535 Found link https://files.pythonhosted.org/packages/bf/27/ee3a39812b4ef948a1c918a961b3226551f295303cc9ba81958d83917238/lobster_ai-0.4.1.3.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.1.3 2026-01-08T00:56:20,535 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/bf/b4/ac38db54d1442ddba719f431bb2b6a2396b696617b6701cb8326dc81b8f6/lobster_ai-0.4.1.4-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T00:56:20,536 Found link https://files.pythonhosted.org/packages/25/76/dd6e0450e6ba1cae1eeb0956576d5d07bd08b40d7005b9c768b756af7484/lobster_ai-0.4.1.4.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.1.4 2026-01-08T00:56:20,537 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/fa/c6/d61c31b8779125e2a9cfbffc20fcdb7c3790c8bf64ecb3c74a9571cf1b9a/lobster_ai-0.4.1.5-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T00:56:20,538 Found link https://files.pythonhosted.org/packages/e1/fb/4535dc1c984840956291d1d24e03b91a321639f5a209aa1529becd12d0af/lobster_ai-0.4.1.5.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.1.5 2026-01-08T00:56:20,539 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/ca/97/988cbb274eec6f1beb4865d431331d0881a1bff32e9c973b18331edd98ff/lobster_ai-0.4.1.6-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T00:56:20,540 Found link https://files.pythonhosted.org/packages/42/de/54943a601e8ecc810ab58b7d5a37b5bac1c4f3670d3ebd4004961ef0d28d/lobster_ai-0.4.1.6.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.1.6 2026-01-08T00:56:20,540 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/7a/d2/8b0612b230d6fd156dfcf783b97bc98b6ca4b91e3d9620d1f3ee4d29b43c/lobster_ai-0.4.1.7-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T00:56:20,541 Found link https://files.pythonhosted.org/packages/7d/14/b48f0f96ccf7745c5199ce1ef21ca76ad5ab79bc7edf7e6d470d0a68db26/lobster_ai-0.4.1.7.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.1.7 2026-01-08T00:56:20,542 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/b1/a3/71ed9d870a6ae1bb3edfe7422e227456174b287a2cc1d03332b78c27e6bf/lobster_ai-0.4.1.9-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T00:56:20,543 Found link https://files.pythonhosted.org/packages/93/ab/e2ab297f8e067b57f90da724b7588bbb039f45193fa1d7c46ca06cf65d7e/lobster_ai-0.4.1.9.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.1.9 2026-01-08T00:56:20,544 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/44/3d/f807b25956a3502de7c9a9d08a17813ad763007a2fb52a3234f44f9dca67/lobster_ai-0.4.2.0-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T00:56:20,545 Found link https://files.pythonhosted.org/packages/77/c7/67d0e05386abd2613dcf01d7b4d35e74ece74ebc746483b35574b80655dd/lobster_ai-0.4.2.0.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.2.0 2026-01-08T00:56:20,546 Fetching project page and analyzing links: https://www.piwheels.org/simple/lobster-ai/ 2026-01-08T00:56:20,547 Getting page https://www.piwheels.org/simple/lobster-ai/ 2026-01-08T00:56:20,548 Found index url https://www.piwheels.org/simple 2026-01-08T00:56:20,702 Fetched page https://www.piwheels.org/simple/lobster-ai/ as text/html 2026-01-08T00:56:20,708 Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.1.9-py3-none-any.whl#sha256=605905694283a743acdfc0bfb13340760d68edb2a17215bc609736da1f423979 (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T00:56:20,709 Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.1.7-py3-none-any.whl#sha256=d5f73a88102ab83530aad98fd331daffe50e5c213851d3140995b8e8ab2c76c2 (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T00:56:20,709 Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.1.6-py3-none-any.whl#sha256=522f41d19d851d030ee5dedb95a4b19a4748ea44ee54236888916b5e6518048d (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T00:56:20,710 Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.1.5-py3-none-any.whl#sha256=64ab95e8749771e60d7b6869152cd847cc2fbcd49dcfa6325db68e7defad357b (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T00:56:20,711 Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.1.4-py3-none-any.whl#sha256=a999a8b38fc5a8e803c713c25ea79bab7d44829ec37405cad04b6f2c9a7b3667 (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T00:56:20,711 Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.1.3-py3-none-any.whl#sha256=80e2e1901c9acbae8f29a51305af7fc23762871021f86168660c0098154ea64d (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T00:56:20,712 Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.1.2-py3-none-any.whl#sha256=7f38e7703c88c0c7fe4811c9c7b04da6469ca264d3e261e794b0a59376ba4d0e (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T00:56:20,713 Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.1.1-py3-none-any.whl#sha256=d30d1083ded2235ea62f728b72c55b58d61c4164f9913d1996d68c451dac3c4d (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T00:56:20,713 Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.0.9-py3-none-any.whl#sha256=48a46075806c2941d705fa7eb0da81c1c162cc4b62b1bc22b578315363b4de75 (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T00:56:20,714 Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.0.8-py3-none-any.whl#sha256=a66d81b7558824d17ab891c3a592ceb8ee53492f413d9cfdd89bdecd8fd1de85 (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T00:56:20,715 Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.0.7-py3-none-any.whl#sha256=cbee755d3f7ac5e1cd5b65bfe0309faa4acba90c1a6a1b32036010c45f0868d9 (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T00:56:20,716 Skipping link: not a file: https://www.piwheels.org/simple/lobster-ai/ 2026-01-08T00:56:20,717 Skipping link: not a file: https://pypi.org/simple/lobster-ai/ 2026-01-08T00:56:20,746 Given no hashes to check 1 links for project 'lobster-ai': discarding no candidates 2026-01-08T00:56:20,773 Collecting lobster-ai==0.4.2.0 2026-01-08T00:56:20,776 Created temporary directory: /tmp/pip-unpack-va60nz4p 2026-01-08T00:56:21,001 Downloading lobster_ai-0.4.2.0.tar.gz (1.2 MB) 2026-01-08T00:56:22,007 Added lobster-ai==0.4.2.0 from https://files.pythonhosted.org/packages/77/c7/67d0e05386abd2613dcf01d7b4d35e74ece74ebc746483b35574b80655dd/lobster_ai-0.4.2.0.tar.gz to build tracker '/tmp/pip-build-tracker-s6fgs139' 2026-01-08T00:56:22,015 Created temporary directory: /tmp/pip-build-env-5k8bop1z 2026-01-08T00:56:22,020 Installing build dependencies: started 2026-01-08T00:56:22,021 Running command pip subprocess to install build dependencies 2026-01-08T00:56:23,186 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-01-08T00:56:23,844 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-01-08T00:56:23,867 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-01-08T00:56:25,609 Collecting setuptools>=65.0 2026-01-08T00:56:25,701 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2026-01-08T00:56:25,971 Collecting wheel 2026-01-08T00:56:25,989 Using cached https://www.piwheels.org/simple/wheel/wheel-0.45.1-py3-none-any.whl (72 kB) 2026-01-08T00:56:28,969 Installing collected packages: wheel, setuptools 2026-01-08T00:56:29,215 Creating /tmp/pip-build-env-5k8bop1z/overlay/local/bin 2026-01-08T00:56:29,217 changing mode of /tmp/pip-build-env-5k8bop1z/overlay/local/bin/wheel to 755 2026-01-08T00:56:32,921 Successfully installed setuptools-80.9.0 wheel-0.45.1 2026-01-08T00:56:33,199 Installing build dependencies: finished with status 'done' 2026-01-08T00:56:33,206 Getting requirements to build wheel: started 2026-01-08T00:56:33,207 Running command Getting requirements to build wheel 2026-01-08T00:56:33,904 /tmp/pip-build-env-5k8bop1z/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `license` overwritten by `pyproject.toml` 2026-01-08T00:56:33,905 corresp(dist, value, root_dir) 2026-01-08T00:56:33,905 /tmp/pip-build-env-5k8bop1z/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2026-01-08T00:56:33,906 corresp(dist, value, root_dir) 2026-01-08T00:56:33,907 /tmp/pip-build-env-5k8bop1z/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `extras_require` overwritten in `pyproject.toml` (optional-dependencies) 2026-01-08T00:56:33,907 corresp(dist, value, root_dir) 2026-01-08T00:56:34,012 running egg_info 2026-01-08T00:56:34,019 writing lobster_ai.egg-info/PKG-INFO 2026-01-08T00:56:34,049 writing dependency_links to lobster_ai.egg-info/dependency_links.txt 2026-01-08T00:56:34,051 writing entry points to lobster_ai.egg-info/entry_points.txt 2026-01-08T00:56:34,070 writing requirements to lobster_ai.egg-info/requires.txt 2026-01-08T00:56:34,072 writing top-level names to lobster_ai.egg-info/top_level.txt 2026-01-08T00:56:34,217 reading manifest file 'lobster_ai.egg-info/SOURCES.txt' 2026-01-08T00:56:34,234 adding license file 'LICENSE' 2026-01-08T00:56:34,248 writing manifest file 'lobster_ai.egg-info/SOURCES.txt' 2026-01-08T00:56:34,347 Getting requirements to build wheel: finished with status 'done' 2026-01-08T00:56:34,351 Created temporary directory: /tmp/pip-modern-metadata-94wf4elj 2026-01-08T00:56:34,353 Preparing metadata (pyproject.toml): started 2026-01-08T00:56:34,355 Running command Preparing metadata (pyproject.toml) 2026-01-08T00:56:34,987 /tmp/pip-build-env-5k8bop1z/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `license` overwritten by `pyproject.toml` 2026-01-08T00:56:34,987 corresp(dist, value, root_dir) 2026-01-08T00:56:34,988 /tmp/pip-build-env-5k8bop1z/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2026-01-08T00:56:34,989 corresp(dist, value, root_dir) 2026-01-08T00:56:34,989 /tmp/pip-build-env-5k8bop1z/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `extras_require` overwritten in `pyproject.toml` (optional-dependencies) 2026-01-08T00:56:34,990 corresp(dist, value, root_dir) 2026-01-08T00:56:35,094 running dist_info 2026-01-08T00:56:35,106 creating /tmp/pip-modern-metadata-94wf4elj/lobster_ai.egg-info 2026-01-08T00:56:35,107 writing /tmp/pip-modern-metadata-94wf4elj/lobster_ai.egg-info/PKG-INFO 2026-01-08T00:56:35,139 writing dependency_links to /tmp/pip-modern-metadata-94wf4elj/lobster_ai.egg-info/dependency_links.txt 2026-01-08T00:56:35,141 writing entry points to /tmp/pip-modern-metadata-94wf4elj/lobster_ai.egg-info/entry_points.txt 2026-01-08T00:56:35,161 writing requirements to /tmp/pip-modern-metadata-94wf4elj/lobster_ai.egg-info/requires.txt 2026-01-08T00:56:35,162 writing top-level names to /tmp/pip-modern-metadata-94wf4elj/lobster_ai.egg-info/top_level.txt 2026-01-08T00:56:35,164 writing manifest file '/tmp/pip-modern-metadata-94wf4elj/lobster_ai.egg-info/SOURCES.txt' 2026-01-08T00:56:35,301 reading manifest file '/tmp/pip-modern-metadata-94wf4elj/lobster_ai.egg-info/SOURCES.txt' 2026-01-08T00:56:35,303 adding license file 'LICENSE' 2026-01-08T00:56:35,314 writing manifest file '/tmp/pip-modern-metadata-94wf4elj/lobster_ai.egg-info/SOURCES.txt' 2026-01-08T00:56:35,316 creating '/tmp/pip-modern-metadata-94wf4elj/lobster_ai-0.4.2.0.dist-info' 2026-01-08T00:56:35,449 Preparing metadata (pyproject.toml): finished with status 'done' 2026-01-08T00:56:35,456 Source in /tmp/pip-wheel-ggg0sxpp/lobster-ai_c7bb5e43617f46e384d1753f2be13ae2 has version 0.4.2.0, which satisfies requirement lobster-ai==0.4.2.0 from https://files.pythonhosted.org/packages/77/c7/67d0e05386abd2613dcf01d7b4d35e74ece74ebc746483b35574b80655dd/lobster_ai-0.4.2.0.tar.gz 2026-01-08T00:56:35,457 Removed lobster-ai==0.4.2.0 from https://files.pythonhosted.org/packages/77/c7/67d0e05386abd2613dcf01d7b4d35e74ece74ebc746483b35574b80655dd/lobster_ai-0.4.2.0.tar.gz from build tracker '/tmp/pip-build-tracker-s6fgs139' 2026-01-08T00:56:35,467 Created temporary directory: /tmp/pip-unpack-0ugg7b7r 2026-01-08T00:56:35,468 Building wheels for collected packages: lobster-ai 2026-01-08T00:56:35,473 Created temporary directory: /tmp/pip-wheel-kps_hbix 2026-01-08T00:56:35,473 Destination directory: /tmp/pip-wheel-kps_hbix 2026-01-08T00:56:35,476 Building wheel for lobster-ai (pyproject.toml): started 2026-01-08T00:56:35,477 Running command Building wheel for lobster-ai (pyproject.toml) 2026-01-08T00:56:36,093 /tmp/pip-build-env-5k8bop1z/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `license` overwritten by `pyproject.toml` 2026-01-08T00:56:36,093 corresp(dist, value, root_dir) 2026-01-08T00:56:36,094 /tmp/pip-build-env-5k8bop1z/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2026-01-08T00:56:36,095 corresp(dist, value, root_dir) 2026-01-08T00:56:36,095 /tmp/pip-build-env-5k8bop1z/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `extras_require` overwritten in `pyproject.toml` (optional-dependencies) 2026-01-08T00:56:36,096 corresp(dist, value, root_dir) 2026-01-08T00:56:36,187 running bdist_wheel 2026-01-08T00:56:36,208 running build 2026-01-08T00:56:36,209 running build_py 2026-01-08T00:56:36,216 creating build/lib/lobster 2026-01-08T00:56:36,218 copying lobster/__main__.py -> build/lib/lobster 2026-01-08T00:56:36,221 copying lobster/main.py -> build/lib/lobster 2026-01-08T00:56:36,222 copying lobster/_version.py -> build/lib/lobster 2026-01-08T00:56:36,224 copying lobster/version.py -> build/lib/lobster 2026-01-08T00:56:36,226 copying lobster/cli.py -> build/lib/lobster 2026-01-08T00:56:36,235 creating build/lib/lobster/config 2026-01-08T00:56:36,236 copying lobster/config/settings.py -> build/lib/lobster/config 2026-01-08T00:56:36,239 copying lobster/config/subscription_tiers.py -> build/lib/lobster/config 2026-01-08T00:56:36,241 copying lobster/config/__init__.py -> build/lib/lobster/config 2026-01-08T00:56:36,243 copying lobster/config/provider_setup.py -> build/lib/lobster/config 2026-01-08T00:56:36,246 copying lobster/config/agent_config.py -> build/lib/lobster/config 2026-01-08T00:56:36,248 copying lobster/config/constants.py -> build/lib/lobster/config 2026-01-08T00:56:36,250 copying lobster/config/ssl_setup.py -> build/lib/lobster/config 2026-01-08T00:56:36,253 copying lobster/config/agent_registry.py -> build/lib/lobster/config 2026-01-08T00:56:36,255 copying lobster/config/ollama_service.py -> build/lib/lobster/config 2026-01-08T00:56:36,258 copying lobster/config/config_manager.py -> build/lib/lobster/config 2026-01-08T00:56:36,260 copying lobster/config/global_config.py -> build/lib/lobster/config 2026-01-08T00:56:36,263 copying lobster/config/workspace_config.py -> build/lib/lobster/config 2026-01-08T00:56:36,265 copying lobster/config/agent_capabilities.py -> build/lib/lobster/config 2026-01-08T00:56:36,269 copying lobster/config/supervisor_config.py -> build/lib/lobster/config 2026-01-08T00:56:36,271 copying lobster/config/model_service.py -> build/lib/lobster/config 2026-01-08T00:56:36,274 copying lobster/config/base_config.py -> build/lib/lobster/config 2026-01-08T00:56:36,276 copying lobster/config/llm_factory.py -> build/lib/lobster/config 2026-01-08T00:56:36,280 creating build/lib/lobster/utils 2026-01-08T00:56:36,281 copying lobster/utils/ssl_utils.py -> build/lib/lobster/utils 2026-01-08T00:56:36,283 copying lobster/utils/file_naming.py -> build/lib/lobster/utils 2026-01-08T00:56:36,286 copying lobster/utils/__init__.py -> build/lib/lobster/utils 2026-01-08T00:56:36,288 copying lobster/utils/error_handlers.py -> build/lib/lobster/utils 2026-01-08T00:56:36,291 copying lobster/utils/progress_wrapper.py -> build/lib/lobster/utils 2026-01-08T00:56:36,295 copying lobster/utils/deviance.py -> build/lib/lobster/utils 2026-01-08T00:56:36,298 copying lobster/utils/system.py -> build/lib/lobster/utils 2026-01-08T00:56:36,301 copying lobster/utils/logger.py -> build/lib/lobster/utils 2026-01-08T00:56:36,303 copying lobster/utils/json_extractor.py -> build/lib/lobster/utils 2026-01-08T00:56:36,306 copying lobster/utils/callbacks.py -> build/lib/lobster/utils 2026-01-08T00:56:36,310 copying lobster/utils/file_analyzer.py -> build/lib/lobster/utils 2026-01-08T00:56:36,314 creating build/lib/lobster/core 2026-01-08T00:56:36,315 copying lobster/core/component_registry.py -> build/lib/lobster/core 2026-01-08T00:56:36,318 copying lobster/core/exceptions.py -> build/lib/lobster/core 2026-01-08T00:56:36,321 copying lobster/core/notebook_exporter.py -> build/lib/lobster/core 2026-01-08T00:56:36,324 copying lobster/core/data_manager_v2.py -> build/lib/lobster/core 2026-01-08T00:56:36,330 copying lobster/core/ris_parser.py -> build/lib/lobster/core 2026-01-08T00:56:36,333 copying lobster/core/__init__.py -> build/lib/lobster/core 2026-01-08T00:56:36,336 copying lobster/core/provenance.py -> build/lib/lobster/core 2026-01-08T00:56:36,339 copying lobster/core/publication_queue.py -> build/lib/lobster/core 2026-01-08T00:56:36,342 copying lobster/core/workspace.py -> build/lib/lobster/core 2026-01-08T00:56:36,344 copying lobster/core/download_queue.py -> build/lib/lobster/core 2026-01-08T00:56:36,347 copying lobster/core/config_resolver.py -> build/lib/lobster/core 2026-01-08T00:56:36,350 copying lobster/core/notebook_executor.py -> build/lib/lobster/core 2026-01-08T00:56:36,353 copying lobster/core/plugin_loader.py -> build/lib/lobster/core 2026-01-08T00:56:36,356 copying lobster/core/client.py -> build/lib/lobster/core 2026-01-08T00:56:36,362 copying lobster/core/archive_utils.py -> build/lib/lobster/core 2026-01-08T00:56:36,364 copying lobster/core/plot_manager.py -> build/lib/lobster/core 2026-01-08T00:56:36,368 copying lobster/core/license_manager.py -> build/lib/lobster/core 2026-01-08T00:56:36,371 copying lobster/core/queue_storage.py -> build/lib/lobster/core 2026-01-08T00:56:36,373 copying lobster/core/notebook_validator.py -> build/lib/lobster/core 2026-01-08T00:56:36,376 copying lobster/core/ir_coverage.py -> build/lib/lobster/core 2026-01-08T00:56:36,379 copying lobster/core/analysis_ir.py -> build/lib/lobster/core 2026-01-08T00:56:36,383 creating build/lib/lobster/lobster_cloud 2026-01-08T00:56:36,384 copying lobster/lobster_cloud/__init__.py -> build/lib/lobster/lobster_cloud 2026-01-08T00:56:36,386 copying lobster/lobster_cloud/client.py -> build/lib/lobster/lobster_cloud 2026-01-08T00:56:36,390 creating build/lib/lobster/services 2026-01-08T00:56:36,391 copying lobster/services/__init__.py -> build/lib/lobster/services 2026-01-08T00:56:36,394 creating build/lib/lobster/agents 2026-01-08T00:56:36,395 copying lobster/agents/__init__.py -> build/lib/lobster/agents 2026-01-08T00:56:36,397 copying lobster/agents/data_expert.py -> build/lib/lobster/agents 2026-01-08T00:56:36,401 copying lobster/agents/draw_graph.py -> build/lib/lobster/agents 2026-01-08T00:56:36,404 copying lobster/agents/visualization_expert.py -> build/lib/lobster/agents 2026-01-08T00:56:36,407 copying lobster/agents/data_expert_assistant.py -> build/lib/lobster/agents 2026-01-08T00:56:36,411 copying lobster/agents/supervisor.py -> build/lib/lobster/agents 2026-01-08T00:56:36,415 copying lobster/agents/graph.py -> build/lib/lobster/agents 2026-01-08T00:56:36,418 copying lobster/agents/state.py -> build/lib/lobster/agents 2026-01-08T00:56:36,421 copying lobster/agents/research_agent.py -> build/lib/lobster/agents 2026-01-08T00:56:36,427 creating build/lib/lobster/cli_internal 2026-01-08T00:56:36,428 copying lobster/cli_internal/__init__.py -> build/lib/lobster/cli_internal 2026-01-08T00:56:36,431 creating build/lib/lobster/ui 2026-01-08T00:56:36,432 copying lobster/ui/commands.py -> build/lib/lobster/ui 2026-01-08T00:56:36,435 copying lobster/ui/__init__.py -> build/lib/lobster/ui 2026-01-08T00:56:36,438 copying lobster/ui/live_dashboard.py -> build/lib/lobster/ui 2026-01-08T00:56:36,441 copying lobster/ui/progress_manager.py -> build/lib/lobster/ui 2026-01-08T00:56:36,444 copying lobster/ui/os_app.py -> build/lib/lobster/ui 2026-01-08T00:56:36,446 copying lobster/ui/console_manager.py -> build/lib/lobster/ui 2026-01-08T00:56:36,449 copying lobster/ui/themes.py -> build/lib/lobster/ui 2026-01-08T00:56:36,453 creating build/lib/lobster/tools 2026-01-08T00:56:36,454 copying lobster/tools/geo_downloader.py -> build/lib/lobster/tools 2026-01-08T00:56:36,456 copying lobster/tools/enhanced_handoff_tool.py -> build/lib/lobster/tools 2026-01-08T00:56:36,460 copying lobster/tools/__init__.py -> build/lib/lobster/tools 2026-01-08T00:56:36,462 copying lobster/tools/workspace_tool.py -> build/lib/lobster/tools 2026-01-08T00:56:36,467 copying lobster/tools/pipeline_strategy.py -> build/lib/lobster/tools 2026-01-08T00:56:36,469 copying lobster/tools/handoff_tool.py -> build/lib/lobster/tools 2026-01-08T00:56:36,472 copying lobster/tools/download_orchestrator.py -> build/lib/lobster/tools 2026-01-08T00:56:36,475 copying lobster/tools/geo_parser.py -> build/lib/lobster/tools 2026-01-08T00:56:36,477 copying lobster/tools/gpu_detector.py -> build/lib/lobster/tools 2026-01-08T00:56:36,480 copying lobster/tools/rate_limiter.py -> build/lib/lobster/tools 2026-01-08T00:56:36,483 copying lobster/tools/todo_tools.py -> build/lib/lobster/tools 2026-01-08T00:56:36,486 copying lobster/tools/url_transforms.py -> build/lib/lobster/tools 2026-01-08T00:56:36,489 copying lobster/tools/expert_handoff_patterns.py -> build/lib/lobster/tools 2026-01-08T00:56:36,491 copying lobster/tools/expert_handoff_manager.py -> build/lib/lobster/tools 2026-01-08T00:56:36,494 copying lobster/tools/workflow_tracker.py -> build/lib/lobster/tools 2026-01-08T00:56:36,497 copying lobster/tools/custom_code_tool.py -> build/lib/lobster/tools 2026-01-08T00:56:36,501 creating build/lib/lobster/config/providers 2026-01-08T00:56:36,502 copying lobster/config/providers/base_provider.py -> build/lib/lobster/config/providers 2026-01-08T00:56:36,505 copying lobster/config/providers/gemini_provider.py -> build/lib/lobster/config/providers 2026-01-08T00:56:36,508 copying lobster/config/providers/__init__.py -> build/lib/lobster/config/providers 2026-01-08T00:56:36,510 copying lobster/config/providers/bedrock_provider.py -> build/lib/lobster/config/providers 2026-01-08T00:56:36,513 copying lobster/config/providers/anthropic_provider.py -> build/lib/lobster/config/providers 2026-01-08T00:56:36,516 copying lobster/config/providers/ollama_provider.py -> build/lib/lobster/config/providers 2026-01-08T00:56:36,519 copying lobster/config/providers/registry.py -> build/lib/lobster/config/providers 2026-01-08T00:56:36,523 creating build/lib/lobster/core/interfaces 2026-01-08T00:56:36,524 copying lobster/core/interfaces/__init__.py -> build/lib/lobster/core/interfaces 2026-01-08T00:56:36,526 copying lobster/core/interfaces/adapter.py -> build/lib/lobster/core/interfaces 2026-01-08T00:56:36,529 copying lobster/core/interfaces/download_service.py -> build/lib/lobster/core/interfaces 2026-01-08T00:56:36,532 copying lobster/core/interfaces/backend.py -> build/lib/lobster/core/interfaces 2026-01-08T00:56:36,535 copying lobster/core/interfaces/base_client.py -> build/lib/lobster/core/interfaces 2026-01-08T00:56:36,538 copying lobster/core/interfaces/validator.py -> build/lib/lobster/core/interfaces 2026-01-08T00:56:36,541 creating build/lib/lobster/core/adapters 2026-01-08T00:56:36,542 copying lobster/core/adapters/base.py -> build/lib/lobster/core/adapters 2026-01-08T00:56:36,545 copying lobster/core/adapters/__init__.py -> build/lib/lobster/core/adapters 2026-01-08T00:56:36,547 copying lobster/core/adapters/transcriptomics_adapter.py -> build/lib/lobster/core/adapters 2026-01-08T00:56:36,550 copying lobster/core/adapters/proteomics_adapter.py -> build/lib/lobster/core/adapters 2026-01-08T00:56:36,554 copying lobster/core/adapters/protein_structure_adapter.py -> build/lib/lobster/core/adapters 2026-01-08T00:56:36,557 copying lobster/core/adapters/pseudobulk_adapter.py -> build/lib/lobster/core/adapters 2026-01-08T00:56:36,560 creating build/lib/lobster/core/utils 2026-01-08T00:56:36,561 copying lobster/core/utils/__init__.py -> build/lib/lobster/core/utils 2026-01-08T00:56:36,563 copying lobster/core/utils/h5ad_utils.py -> build/lib/lobster/core/utils 2026-01-08T00:56:36,566 creating build/lib/lobster/core/backends 2026-01-08T00:56:36,567 copying lobster/core/backends/base.py -> build/lib/lobster/core/backends 2026-01-08T00:56:36,570 copying lobster/core/backends/__init__.py -> build/lib/lobster/core/backends 2026-01-08T00:56:36,572 copying lobster/core/backends/mudata_backend.py -> build/lib/lobster/core/backends 2026-01-08T00:56:36,575 copying lobster/core/backends/h5ad_backend.py -> build/lib/lobster/core/backends 2026-01-08T00:56:36,579 creating build/lib/lobster/core/identifiers 2026-01-08T00:56:36,580 copying lobster/core/identifiers/__init__.py -> build/lib/lobster/core/identifiers 2026-01-08T00:56:36,582 copying lobster/core/identifiers/accession_resolver.py -> build/lib/lobster/core/identifiers 2026-01-08T00:56:36,585 creating build/lib/lobster/core/schemas 2026-01-08T00:56:36,586 copying lobster/core/schemas/database_registry.py -> build/lib/lobster/core/schemas 2026-01-08T00:56:36,589 copying lobster/core/schemas/sra.py -> build/lib/lobster/core/schemas 2026-01-08T00:56:36,592 copying lobster/core/schemas/export_schemas.py -> build/lib/lobster/core/schemas 2026-01-08T00:56:36,595 copying lobster/core/schemas/__init__.py -> build/lib/lobster/core/schemas 2026-01-08T00:56:36,597 copying lobster/core/schemas/database_mappings.py -> build/lib/lobster/core/schemas 2026-01-08T00:56:36,600 copying lobster/core/schemas/protein_structure.py -> build/lib/lobster/core/schemas 2026-01-08T00:56:36,603 copying lobster/core/schemas/publication_queue.py -> build/lib/lobster/core/schemas 2026-01-08T00:56:36,605 copying lobster/core/schemas/transcriptomics.py -> build/lib/lobster/core/schemas 2026-01-08T00:56:36,611 copying lobster/core/schemas/proteomics.py -> build/lib/lobster/core/schemas 2026-01-08T00:56:36,614 copying lobster/core/schemas/download_queue.py -> build/lib/lobster/core/schemas 2026-01-08T00:56:36,616 copying lobster/core/schemas/validation.py -> build/lib/lobster/core/schemas 2026-01-08T00:56:36,619 copying lobster/core/schemas/metagenomics.py -> build/lib/lobster/core/schemas 2026-01-08T00:56:36,622 copying lobster/core/schemas/metabolomics.py -> build/lib/lobster/core/schemas 2026-01-08T00:56:36,626 copying lobster/core/schemas/download_urls.py -> build/lib/lobster/core/schemas 2026-01-08T00:56:36,629 creating build/lib/lobster/services/templates 2026-01-08T00:56:36,630 copying lobster/services/templates/__init__.py -> build/lib/lobster/services/templates 2026-01-08T00:56:36,632 copying lobster/services/templates/annotation_templates.py -> build/lib/lobster/services/templates 2026-01-08T00:56:36,635 creating build/lib/lobster/services/visualization 2026-01-08T00:56:36,636 copying lobster/services/visualization/pymol_visualization_service.py -> build/lib/lobster/services/visualization 2026-01-08T00:56:36,639 copying lobster/services/visualization/visualization_service.py -> build/lib/lobster/services/visualization 2026-01-08T00:56:36,644 copying lobster/services/visualization/__init__.py -> build/lib/lobster/services/visualization 2026-01-08T00:56:36,645 copying lobster/services/visualization/bulk_visualization_service.py -> build/lib/lobster/services/visualization 2026-01-08T00:56:36,649 creating build/lib/lobster/services/metadata 2026-01-08T00:56:36,650 copying lobster/services/metadata/identifier_provenance_service.py -> build/lib/lobster/services/metadata 2026-01-08T00:56:36,652 copying lobster/services/metadata/metadata_validation_service.py -> build/lib/lobster/services/metadata 2026-01-08T00:56:36,655 copying lobster/services/metadata/metadata_standardization_service.py -> build/lib/lobster/services/metadata 2026-01-08T00:56:36,658 copying lobster/services/metadata/__init__.py -> build/lib/lobster/services/metadata 2026-01-08T00:56:36,660 copying lobster/services/metadata/manual_annotation_service.py -> build/lib/lobster/services/metadata 2026-01-08T00:56:36,663 copying lobster/services/metadata/sample_grouping_service.py -> build/lib/lobster/services/metadata 2026-01-08T00:56:36,666 creating build/lib/lobster/services/quality 2026-01-08T00:56:36,667 copying lobster/services/quality/__init__.py -> build/lib/lobster/services/quality 2026-01-08T00:56:36,668 copying lobster/services/quality/preprocessing_service.py -> build/lib/lobster/services/quality 2026-01-08T00:56:36,673 copying lobster/services/quality/quality_service.py -> build/lib/lobster/services/quality 2026-01-08T00:56:36,676 creating build/lib/lobster/services/ml 2026-01-08T00:56:36,678 copying lobster/services/ml/__init__.py -> build/lib/lobster/services/ml 2026-01-08T00:56:36,680 creating build/lib/lobster/services/data_management 2026-01-08T00:56:36,681 copying lobster/services/data_management/concatenation_service.py -> build/lib/lobster/services/data_management 2026-01-08T00:56:36,686 copying lobster/services/data_management/__init__.py -> build/lib/lobster/services/data_management 2026-01-08T00:56:36,687 copying lobster/services/data_management/modality_management_service.py -> build/lib/lobster/services/data_management 2026-01-08T00:56:36,691 creating build/lib/lobster/services/orchestration 2026-01-08T00:56:36,692 copying lobster/services/orchestration/publication_processing_service.py -> build/lib/lobster/services/orchestration 2026-01-08T00:56:36,698 copying lobster/services/orchestration/__init__.py -> build/lib/lobster/services/orchestration 2026-01-08T00:56:36,700 creating build/lib/lobster/services/analysis 2026-01-08T00:56:36,701 copying lobster/services/analysis/structure_analysis_service.py -> build/lib/lobster/services/analysis 2026-01-08T00:56:36,705 copying lobster/services/analysis/pseudobulk_service.py -> build/lib/lobster/services/analysis 2026-01-08T00:56:36,707 copying lobster/services/analysis/enhanced_singlecell_service.py -> build/lib/lobster/services/analysis 2026-01-08T00:56:36,711 copying lobster/services/analysis/__init__.py -> build/lib/lobster/services/analysis 2026-01-08T00:56:36,712 copying lobster/services/analysis/bulk_rnaseq_service.py -> build/lib/lobster/services/analysis 2026-01-08T00:56:36,716 copying lobster/services/analysis/differential_formula_service.py -> build/lib/lobster/services/analysis 2026-01-08T00:56:36,719 copying lobster/services/analysis/scvi_embedding_service.py -> build/lib/lobster/services/analysis 2026-01-08T00:56:36,722 copying lobster/services/analysis/clustering_service.py -> build/lib/lobster/services/analysis 2026-01-08T00:56:36,727 creating build/lib/lobster/services/execution 2026-01-08T00:56:36,728 copying lobster/services/execution/custom_code_execution_service.py -> build/lib/lobster/services/execution 2026-01-08T00:56:36,731 copying lobster/services/execution/__init__.py -> build/lib/lobster/services/execution 2026-01-08T00:56:36,733 copying lobster/services/execution/execution_context_builder.py -> build/lib/lobster/services/execution 2026-01-08T00:56:36,736 creating build/lib/lobster/services/data_access 2026-01-08T00:56:36,737 copying lobster/services/data_access/content_access_service.py -> build/lib/lobster/services/data_access 2026-01-08T00:56:36,742 copying lobster/services/data_access/protein_structure_fetch_service.py -> build/lib/lobster/services/data_access 2026-01-08T00:56:36,745 copying lobster/services/data_access/geo_service.py -> build/lib/lobster/services/data_access 2026-01-08T00:56:36,756 copying lobster/services/data_access/sra_download_service.py -> build/lib/lobster/services/data_access 2026-01-08T00:56:36,760 copying lobster/services/data_access/pride_download_service.py -> build/lib/lobster/services/data_access 2026-01-08T00:56:36,763 copying lobster/services/data_access/geo_fallback_service.py -> build/lib/lobster/services/data_access 2026-01-08T00:56:36,765 copying lobster/services/data_access/__init__.py -> build/lib/lobster/services/data_access 2026-01-08T00:56:36,767 copying lobster/services/data_access/docling_service.py -> build/lib/lobster/services/data_access 2026-01-08T00:56:36,770 copying lobster/services/data_access/workspace_content_service.py -> build/lib/lobster/services/data_access 2026-01-08T00:56:36,773 copying lobster/services/data_access/geo_download_service.py -> build/lib/lobster/services/data_access 2026-01-08T00:56:36,777 copying lobster/services/data_access/massive_download_service.py -> build/lib/lobster/services/data_access 2026-01-08T00:56:36,781 creating build/lib/lobster/services/metadata/protocol_extraction 2026-01-08T00:56:36,782 copying lobster/services/metadata/protocol_extraction/base.py -> build/lib/lobster/services/metadata/protocol_extraction 2026-01-08T00:56:36,785 copying lobster/services/metadata/protocol_extraction/__init__.py -> build/lib/lobster/services/metadata/protocol_extraction 2026-01-08T00:56:36,788 creating build/lib/lobster/services/metadata/protocol_extraction/amplicon 2026-01-08T00:56:36,789 copying lobster/services/metadata/protocol_extraction/amplicon/service.py -> build/lib/lobster/services/metadata/protocol_extraction/amplicon 2026-01-08T00:56:36,793 copying lobster/services/metadata/protocol_extraction/amplicon/__init__.py -> build/lib/lobster/services/metadata/protocol_extraction/amplicon 2026-01-08T00:56:36,796 copying lobster/services/metadata/protocol_extraction/amplicon/details.py -> build/lib/lobster/services/metadata/protocol_extraction/amplicon 2026-01-08T00:56:36,799 creating build/lib/lobster/services/metadata/protocol_extraction/rnaseq 2026-01-08T00:56:36,800 copying lobster/services/metadata/protocol_extraction/rnaseq/service.py -> build/lib/lobster/services/metadata/protocol_extraction/rnaseq 2026-01-08T00:56:36,803 copying lobster/services/metadata/protocol_extraction/rnaseq/__init__.py -> build/lib/lobster/services/metadata/protocol_extraction/rnaseq 2026-01-08T00:56:36,805 copying lobster/services/metadata/protocol_extraction/rnaseq/details.py -> build/lib/lobster/services/metadata/protocol_extraction/rnaseq 2026-01-08T00:56:36,808 creating build/lib/lobster/services/metadata/protocol_extraction/mass_spec 2026-01-08T00:56:36,809 copying lobster/services/metadata/protocol_extraction/mass_spec/service.py -> build/lib/lobster/services/metadata/protocol_extraction/mass_spec 2026-01-08T00:56:36,812 copying lobster/services/metadata/protocol_extraction/mass_spec/__init__.py -> build/lib/lobster/services/metadata/protocol_extraction/mass_spec 2026-01-08T00:56:36,814 copying lobster/services/metadata/protocol_extraction/mass_spec/details.py -> build/lib/lobster/services/metadata/protocol_extraction/mass_spec 2026-01-08T00:56:36,818 creating build/lib/lobster/services/data_access/geo 2026-01-08T00:56:36,819 copying lobster/services/data_access/geo/strategy.py -> build/lib/lobster/services/data_access/geo 2026-01-08T00:56:36,822 copying lobster/services/data_access/geo/__init__.py -> build/lib/lobster/services/data_access/geo 2026-01-08T00:56:36,825 copying lobster/services/data_access/geo/facade.py -> build/lib/lobster/services/data_access/geo 2026-01-08T00:56:36,827 copying lobster/services/data_access/geo/downloader.py -> build/lib/lobster/services/data_access/geo 2026-01-08T00:56:36,831 copying lobster/services/data_access/geo/constants.py -> build/lib/lobster/services/data_access/geo 2026-01-08T00:56:36,834 copying lobster/services/data_access/geo/parser.py -> build/lib/lobster/services/data_access/geo 2026-01-08T00:56:36,839 creating build/lib/lobster/services/data_access/geo/metadata 2026-01-08T00:56:36,840 copying lobster/services/data_access/geo/metadata/__init__.py -> build/lib/lobster/services/data_access/geo/metadata 2026-01-08T00:56:36,843 creating build/lib/lobster/services/data_access/geo/sample 2026-01-08T00:56:36,844 copying lobster/services/data_access/geo/sample/__init__.py -> build/lib/lobster/services/data_access/geo/sample 2026-01-08T00:56:36,848 creating build/lib/lobster/services/data_access/geo/utils 2026-01-08T00:56:36,849 copying lobster/services/data_access/geo/utils/__init__.py -> build/lib/lobster/services/data_access/geo/utils 2026-01-08T00:56:36,852 creating build/lib/lobster/services/data_access/geo/loaders 2026-01-08T00:56:36,853 copying lobster/services/data_access/geo/loaders/__init__.py -> build/lib/lobster/services/data_access/geo/loaders 2026-01-08T00:56:36,856 copying lobster/services/data_access/geo/loaders/tenx.py -> build/lib/lobster/services/data_access/geo/loaders 2026-01-08T00:56:36,859 creating build/lib/lobster/agents/archive 2026-01-08T00:56:36,861 copying lobster/agents/archive/research_agent_assistant.py -> build/lib/lobster/agents/archive 2026-01-08T00:56:36,865 creating build/lib/lobster/agents/proteomics 2026-01-08T00:56:36,867 copying lobster/agents/proteomics/__init__.py -> build/lib/lobster/agents/proteomics 2026-01-08T00:56:36,869 copying lobster/agents/proteomics/state.py -> build/lib/lobster/agents/proteomics 2026-01-08T00:56:36,872 creating build/lib/lobster/agents/transcriptomics 2026-01-08T00:56:36,874 copying lobster/agents/transcriptomics/shared_tools.py -> build/lib/lobster/agents/transcriptomics 2026-01-08T00:56:36,877 copying lobster/agents/transcriptomics/__init__.py -> build/lib/lobster/agents/transcriptomics 2026-01-08T00:56:36,878 copying lobster/agents/transcriptomics/de_analysis_expert.py -> build/lib/lobster/agents/transcriptomics 2026-01-08T00:56:36,882 copying lobster/agents/transcriptomics/transcriptomics_expert.py -> build/lib/lobster/agents/transcriptomics 2026-01-08T00:56:36,885 copying lobster/agents/transcriptomics/annotation_expert.py -> build/lib/lobster/agents/transcriptomics 2026-01-08T00:56:36,888 copying lobster/agents/transcriptomics/state.py -> build/lib/lobster/agents/transcriptomics 2026-01-08T00:56:36,890 creating build/lib/lobster/agents/langgraph_supervisor 2026-01-08T00:56:36,891 copying lobster/agents/langgraph_supervisor/agent_name.py -> build/lib/lobster/agents/langgraph_supervisor 2026-01-08T00:56:36,893 copying lobster/agents/langgraph_supervisor/__init__.py -> build/lib/lobster/agents/langgraph_supervisor 2026-01-08T00:56:36,895 copying lobster/agents/langgraph_supervisor/handoff.py -> build/lib/lobster/agents/langgraph_supervisor 2026-01-08T00:56:36,897 copying lobster/agents/langgraph_supervisor/supervisor.py -> build/lib/lobster/agents/langgraph_supervisor 2026-01-08T00:56:36,900 creating build/lib/lobster/cli_internal/utils 2026-01-08T00:56:36,901 copying lobster/cli_internal/utils/__init__.py -> build/lib/lobster/cli_internal/utils 2026-01-08T00:56:36,903 copying lobster/cli_internal/utils/path_resolution.py -> build/lib/lobster/cli_internal/utils 2026-01-08T00:56:36,905 creating build/lib/lobster/cli_internal/commands 2026-01-08T00:56:36,906 copying lobster/cli_internal/commands/__init__.py -> build/lib/lobster/cli_internal/commands 2026-01-08T00:56:36,909 copying lobster/cli_internal/commands/output_adapter.py -> build/lib/lobster/cli_internal/commands 2026-01-08T00:56:36,912 creating build/lib/lobster/cli_internal/commands/light 2026-01-08T00:56:36,913 copying lobster/cli_internal/commands/light/config_commands.py -> build/lib/lobster/cli_internal/commands/light 2026-01-08T00:56:36,915 copying lobster/cli_internal/commands/light/__init__.py -> build/lib/lobster/cli_internal/commands/light 2026-01-08T00:56:36,917 copying lobster/cli_internal/commands/light/pipeline_commands.py -> build/lib/lobster/cli_internal/commands/light 2026-01-08T00:56:36,920 copying lobster/cli_internal/commands/light/workspace_commands.py -> build/lib/lobster/cli_internal/commands/light 2026-01-08T00:56:36,922 copying lobster/cli_internal/commands/light/file_commands.py -> build/lib/lobster/cli_internal/commands/light 2026-01-08T00:56:36,925 copying lobster/cli_internal/commands/light/queue_commands.py -> build/lib/lobster/cli_internal/commands/light 2026-01-08T00:56:36,928 copying lobster/cli_internal/commands/light/metadata_commands.py -> build/lib/lobster/cli_internal/commands/light 2026-01-08T00:56:36,931 creating build/lib/lobster/cli_internal/commands/heavy 2026-01-08T00:56:36,932 copying lobster/cli_internal/commands/heavy/__init__.py -> build/lib/lobster/cli_internal/commands/heavy 2026-01-08T00:56:36,934 copying lobster/cli_internal/commands/heavy/visualization_commands.py -> build/lib/lobster/cli_internal/commands/heavy 2026-01-08T00:56:36,936 copying lobster/cli_internal/commands/heavy/modality_commands.py -> build/lib/lobster/cli_internal/commands/heavy 2026-01-08T00:56:36,939 copying lobster/cli_internal/commands/heavy/data_commands.py -> build/lib/lobster/cli_internal/commands/heavy 2026-01-08T00:56:36,942 creating build/lib/lobster/ui/components 2026-01-08T00:56:36,943 copying lobster/ui/components/__init__.py -> build/lib/lobster/ui/components 2026-01-08T00:56:36,945 copying lobster/ui/components/multi_progress.py -> build/lib/lobster/ui/components 2026-01-08T00:56:36,948 copying lobster/ui/components/status_display.py -> build/lib/lobster/ui/components 2026-01-08T00:56:36,950 copying lobster/ui/components/file_tree.py -> build/lib/lobster/ui/components 2026-01-08T00:56:36,953 copying lobster/ui/components/parallel_workers_progress.py -> build/lib/lobster/ui/components 2026-01-08T00:56:36,956 creating build/lib/lobster/ui/callbacks 2026-01-08T00:56:36,957 copying lobster/ui/callbacks/textual_callback.py -> build/lib/lobster/ui/callbacks 2026-01-08T00:56:36,960 copying lobster/ui/callbacks/__init__.py -> build/lib/lobster/ui/callbacks 2026-01-08T00:56:36,962 creating build/lib/lobster/ui/screens 2026-01-08T00:56:36,963 copying lobster/ui/screens/__init__.py -> build/lib/lobster/ui/screens 2026-01-08T00:56:36,965 copying lobster/ui/screens/analysis_screen.py -> build/lib/lobster/ui/screens 2026-01-08T00:56:36,968 creating build/lib/lobster/ui/formatters 2026-01-08T00:56:36,969 copying lobster/ui/formatters/__init__.py -> build/lib/lobster/ui/formatters 2026-01-08T00:56:36,971 creating build/lib/lobster/ui/services 2026-01-08T00:56:36,972 copying lobster/ui/services/__init__.py -> build/lib/lobster/ui/services 2026-01-08T00:56:36,974 copying lobster/ui/services/error_service.py -> build/lib/lobster/ui/services 2026-01-08T00:56:36,977 creating build/lib/lobster/ui/widgets 2026-01-08T00:56:36,978 copying lobster/ui/widgets/connections_panel.py -> build/lib/lobster/ui/widgets 2026-01-08T00:56:36,980 copying lobster/ui/widgets/error_modal.py -> build/lib/lobster/ui/widgets 2026-01-08T00:56:36,983 copying lobster/ui/widgets/adapters_panel.py -> build/lib/lobster/ui/widgets 2026-01-08T00:56:36,985 copying lobster/ui/widgets/__init__.py -> build/lib/lobster/ui/widgets 2026-01-08T00:56:36,987 copying lobster/ui/widgets/data_hub.py -> build/lib/lobster/ui/widgets 2026-01-08T00:56:36,990 copying lobster/ui/widgets/queue_status_bar.py -> build/lib/lobster/ui/widgets 2026-01-08T00:56:36,992 copying lobster/ui/widgets/chat_message.py -> build/lib/lobster/ui/widgets 2026-01-08T00:56:36,994 copying lobster/ui/widgets/query_prompt.py -> build/lib/lobster/ui/widgets 2026-01-08T00:56:36,996 copying lobster/ui/widgets/token_usage_panel.py -> build/lib/lobster/ui/widgets 2026-01-08T00:56:36,998 copying lobster/ui/widgets/activity_log.py -> build/lib/lobster/ui/widgets 2026-01-08T00:56:37,000 copying lobster/ui/widgets/system_info.py -> build/lib/lobster/ui/widgets 2026-01-08T00:56:37,003 copying lobster/ui/widgets/status_bar.py -> build/lib/lobster/ui/widgets 2026-01-08T00:56:37,005 copying lobster/ui/widgets/agents_panel.py -> build/lib/lobster/ui/widgets 2026-01-08T00:56:37,007 copying lobster/ui/widgets/results_display.py -> build/lib/lobster/ui/widgets 2026-01-08T00:56:37,009 copying lobster/ui/widgets/queue_panel.py -> build/lib/lobster/ui/widgets 2026-01-08T00:56:37,011 copying lobster/ui/widgets/modality_list.py -> build/lib/lobster/ui/widgets 2026-01-08T00:56:37,013 copying lobster/ui/widgets/plot_preview.py -> build/lib/lobster/ui/widgets 2026-01-08T00:56:37,016 creating build/lib/lobster/tools/archive 2026-01-08T00:56:37,017 copying lobster/tools/archive/unified_content_service.py -> build/lib/lobster/tools/archive 2026-01-08T00:56:37,020 copying lobster/tools/archive/publication_service.py -> build/lib/lobster/tools/archive 2026-01-08T00:56:37,024 creating build/lib/lobster/tools/providers 2026-01-08T00:56:37,025 copying lobster/tools/providers/structure_provider.py -> build/lib/lobster/tools/providers 2026-01-08T00:56:37,027 copying lobster/tools/providers/base_provider.py -> build/lib/lobster/tools/providers 2026-01-08T00:56:37,030 copying lobster/tools/providers/pmc_provider.py -> build/lib/lobster/tools/providers 2026-01-08T00:56:37,034 copying lobster/tools/providers/webpage_provider.py -> build/lib/lobster/tools/providers 2026-01-08T00:56:37,036 copying lobster/tools/providers/__init__.py -> build/lib/lobster/tools/providers 2026-01-08T00:56:37,039 copying lobster/tools/providers/organism_enum.py -> build/lib/lobster/tools/providers 2026-01-08T00:56:37,041 copying lobster/tools/providers/abstract_provider.py -> build/lib/lobster/tools/providers 2026-01-08T00:56:37,044 copying lobster/tools/providers/massive_provider.py -> build/lib/lobster/tools/providers 2026-01-08T00:56:37,046 copying lobster/tools/providers/provider_registry.py -> build/lib/lobster/tools/providers 2026-01-08T00:56:37,049 copying lobster/tools/providers/pdb_provider.py -> build/lib/lobster/tools/providers 2026-01-08T00:56:37,051 copying lobster/tools/providers/pride_provider.py -> build/lib/lobster/tools/providers 2026-01-08T00:56:37,054 copying lobster/tools/providers/geo_provider.py -> build/lib/lobster/tools/providers 2026-01-08T00:56:37,057 copying lobster/tools/providers/biorxiv_medrxiv_config.py -> build/lib/lobster/tools/providers 2026-01-08T00:56:37,059 copying lobster/tools/providers/sra_provider.py -> build/lib/lobster/tools/providers 2026-01-08T00:56:37,063 copying lobster/tools/providers/biorxiv_medrxiv_provider.py -> build/lib/lobster/tools/providers 2026-01-08T00:56:37,066 copying lobster/tools/providers/ncbi_query_builder.py -> build/lib/lobster/tools/providers 2026-01-08T00:56:37,069 copying lobster/tools/providers/publication_resolver.py -> build/lib/lobster/tools/providers 2026-01-08T00:56:37,072 copying lobster/tools/providers/pubmed_provider.py -> build/lib/lobster/tools/providers 2026-01-08T00:56:37,076 copying lobster/tools/providers/geo_utils.py -> build/lib/lobster/tools/providers 2026-01-08T00:56:37,078 copying lobster/tools/providers/pride_normalizer.py -> build/lib/lobster/tools/providers 2026-01-08T00:56:37,081 copying lobster/tools/providers/biopython_entrez_wrapper.py -> build/lib/lobster/tools/providers 2026-01-08T00:56:37,084 running egg_info 2026-01-08T00:56:37,096 writing lobster_ai.egg-info/PKG-INFO 2026-01-08T00:56:37,126 writing dependency_links to lobster_ai.egg-info/dependency_links.txt 2026-01-08T00:56:37,127 writing entry points to lobster_ai.egg-info/entry_points.txt 2026-01-08T00:56:37,146 writing requirements to lobster_ai.egg-info/requires.txt 2026-01-08T00:56:37,148 writing top-level names to lobster_ai.egg-info/top_level.txt 2026-01-08T00:56:37,269 reading manifest file 'lobster_ai.egg-info/SOURCES.txt' 2026-01-08T00:56:37,286 adding license file 'LICENSE' 2026-01-08T00:56:37,300 writing manifest file 'lobster_ai.egg-info/SOURCES.txt' 2026-01-08T00:56:37,391 creating build/lib/lobster/services/metadata/protocol_extraction/amplicon/resources 2026-01-08T00:56:37,392 copying lobster/services/metadata/protocol_extraction/amplicon/resources/primers.json -> build/lib/lobster/services/metadata/protocol_extraction/amplicon/resources 2026-01-08T00:56:37,430 installing to build/bdist.linux-armv7l/wheel 2026-01-08T00:56:37,431 running install 2026-01-08T00:56:37,454 running install_lib 2026-01-08T00:56:37,461 creating build/bdist.linux-armv7l/wheel 2026-01-08T00:56:37,463 creating build/bdist.linux-armv7l/wheel/lobster 2026-01-08T00:56:37,465 creating build/bdist.linux-armv7l/wheel/lobster/config 2026-01-08T00:56:37,466 copying build/lib/lobster/config/settings.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-08T00:56:37,469 copying build/lib/lobster/config/subscription_tiers.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-08T00:56:37,472 copying build/lib/lobster/config/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-08T00:56:37,474 copying build/lib/lobster/config/provider_setup.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-08T00:56:37,476 copying build/lib/lobster/config/agent_config.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-08T00:56:37,479 copying build/lib/lobster/config/constants.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-08T00:56:37,481 copying build/lib/lobster/config/ssl_setup.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-08T00:56:37,484 creating build/bdist.linux-armv7l/wheel/lobster/config/providers 2026-01-08T00:56:37,485 copying build/lib/lobster/config/providers/base_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers 2026-01-08T00:56:37,487 copying build/lib/lobster/config/providers/gemini_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers 2026-01-08T00:56:37,490 copying build/lib/lobster/config/providers/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers 2026-01-08T00:56:37,492 copying build/lib/lobster/config/providers/bedrock_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers 2026-01-08T00:56:37,494 copying build/lib/lobster/config/providers/anthropic_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers 2026-01-08T00:56:37,496 copying build/lib/lobster/config/providers/ollama_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers 2026-01-08T00:56:37,499 copying build/lib/lobster/config/providers/registry.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers 2026-01-08T00:56:37,502 copying build/lib/lobster/config/agent_registry.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-08T00:56:37,504 copying build/lib/lobster/config/ollama_service.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-08T00:56:37,506 copying build/lib/lobster/config/config_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-08T00:56:37,509 copying build/lib/lobster/config/global_config.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-08T00:56:37,511 copying build/lib/lobster/config/workspace_config.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-08T00:56:37,513 copying build/lib/lobster/config/agent_capabilities.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-08T00:56:37,516 copying build/lib/lobster/config/supervisor_config.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-08T00:56:37,519 copying build/lib/lobster/config/model_service.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-08T00:56:37,521 copying build/lib/lobster/config/base_config.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-08T00:56:37,523 copying build/lib/lobster/config/llm_factory.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-08T00:56:37,526 copying build/lib/lobster/__main__.py -> build/bdist.linux-armv7l/wheel/./lobster 2026-01-08T00:56:37,528 copying build/lib/lobster/main.py -> build/bdist.linux-armv7l/wheel/./lobster 2026-01-08T00:56:37,530 creating build/bdist.linux-armv7l/wheel/lobster/utils 2026-01-08T00:56:37,531 copying build/lib/lobster/utils/ssl_utils.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-08T00:56:37,533 copying build/lib/lobster/utils/file_naming.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-08T00:56:37,536 copying build/lib/lobster/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-08T00:56:37,538 copying build/lib/lobster/utils/error_handlers.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-08T00:56:37,541 copying build/lib/lobster/utils/progress_wrapper.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-08T00:56:37,543 copying build/lib/lobster/utils/deviance.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-08T00:56:37,545 copying build/lib/lobster/utils/system.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-08T00:56:37,547 copying build/lib/lobster/utils/logger.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-08T00:56:37,549 copying build/lib/lobster/utils/json_extractor.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-08T00:56:37,551 copying build/lib/lobster/utils/callbacks.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-08T00:56:37,554 copying build/lib/lobster/utils/file_analyzer.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-08T00:56:37,557 copying build/lib/lobster/_version.py -> build/bdist.linux-armv7l/wheel/./lobster 2026-01-08T00:56:37,560 creating build/bdist.linux-armv7l/wheel/lobster/core 2026-01-08T00:56:37,561 copying build/lib/lobster/core/component_registry.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-08T00:56:37,564 copying build/lib/lobster/core/exceptions.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-08T00:56:37,567 creating build/bdist.linux-armv7l/wheel/lobster/core/interfaces 2026-01-08T00:56:37,568 copying build/lib/lobster/core/interfaces/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces 2026-01-08T00:56:37,570 copying build/lib/lobster/core/interfaces/adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces 2026-01-08T00:56:37,572 copying build/lib/lobster/core/interfaces/download_service.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces 2026-01-08T00:56:37,574 copying build/lib/lobster/core/interfaces/backend.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces 2026-01-08T00:56:37,576 copying build/lib/lobster/core/interfaces/base_client.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces 2026-01-08T00:56:37,579 copying build/lib/lobster/core/interfaces/validator.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces 2026-01-08T00:56:37,581 copying build/lib/lobster/core/notebook_exporter.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-08T00:56:37,584 copying build/lib/lobster/core/data_manager_v2.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-08T00:56:37,588 copying build/lib/lobster/core/ris_parser.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-08T00:56:37,590 copying build/lib/lobster/core/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-08T00:56:37,592 copying build/lib/lobster/core/provenance.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-08T00:56:37,595 copying build/lib/lobster/core/publication_queue.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-08T00:56:37,597 copying build/lib/lobster/core/workspace.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-08T00:56:37,600 creating build/bdist.linux-armv7l/wheel/lobster/core/adapters 2026-01-08T00:56:37,601 copying build/lib/lobster/core/adapters/base.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters 2026-01-08T00:56:37,603 copying build/lib/lobster/core/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters 2026-01-08T00:56:37,605 copying build/lib/lobster/core/adapters/transcriptomics_adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters 2026-01-08T00:56:37,608 copying build/lib/lobster/core/adapters/proteomics_adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters 2026-01-08T00:56:37,611 copying build/lib/lobster/core/adapters/protein_structure_adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters 2026-01-08T00:56:37,613 copying build/lib/lobster/core/adapters/pseudobulk_adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters 2026-01-08T00:56:37,616 creating build/bdist.linux-armv7l/wheel/lobster/core/utils 2026-01-08T00:56:37,617 copying build/lib/lobster/core/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/utils 2026-01-08T00:56:37,619 copying build/lib/lobster/core/utils/h5ad_utils.py -> build/bdist.linux-armv7l/wheel/./lobster/core/utils 2026-01-08T00:56:37,621 copying build/lib/lobster/core/download_queue.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-08T00:56:37,624 copying build/lib/lobster/core/config_resolver.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-08T00:56:37,627 creating build/bdist.linux-armv7l/wheel/lobster/core/backends 2026-01-08T00:56:37,628 copying build/lib/lobster/core/backends/base.py -> build/bdist.linux-armv7l/wheel/./lobster/core/backends 2026-01-08T00:56:37,630 copying build/lib/lobster/core/backends/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/backends 2026-01-08T00:56:37,632 copying build/lib/lobster/core/backends/mudata_backend.py -> build/bdist.linux-armv7l/wheel/./lobster/core/backends 2026-01-08T00:56:37,635 copying build/lib/lobster/core/backends/h5ad_backend.py -> build/bdist.linux-armv7l/wheel/./lobster/core/backends 2026-01-08T00:56:37,638 copying build/lib/lobster/core/notebook_executor.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-08T00:56:37,641 copying build/lib/lobster/core/plugin_loader.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-08T00:56:37,643 copying build/lib/lobster/core/client.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-08T00:56:37,648 creating build/bdist.linux-armv7l/wheel/lobster/core/identifiers 2026-01-08T00:56:37,649 copying build/lib/lobster/core/identifiers/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/identifiers 2026-01-08T00:56:37,651 copying build/lib/lobster/core/identifiers/accession_resolver.py -> build/bdist.linux-armv7l/wheel/./lobster/core/identifiers 2026-01-08T00:56:37,653 copying build/lib/lobster/core/archive_utils.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-08T00:56:37,656 copying build/lib/lobster/core/plot_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-08T00:56:37,660 creating build/bdist.linux-armv7l/wheel/lobster/core/schemas 2026-01-08T00:56:37,661 copying build/lib/lobster/core/schemas/database_registry.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-08T00:56:37,663 copying build/lib/lobster/core/schemas/sra.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-08T00:56:37,666 copying build/lib/lobster/core/schemas/export_schemas.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-08T00:56:37,669 copying build/lib/lobster/core/schemas/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-08T00:56:37,671 copying build/lib/lobster/core/schemas/database_mappings.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-08T00:56:37,674 copying build/lib/lobster/core/schemas/protein_structure.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-08T00:56:37,676 copying build/lib/lobster/core/schemas/publication_queue.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-08T00:56:37,679 copying build/lib/lobster/core/schemas/transcriptomics.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-08T00:56:37,683 copying build/lib/lobster/core/schemas/proteomics.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-08T00:56:37,686 copying build/lib/lobster/core/schemas/download_queue.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-08T00:56:37,688 copying build/lib/lobster/core/schemas/validation.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-08T00:56:37,691 copying build/lib/lobster/core/schemas/metagenomics.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-08T00:56:37,694 copying build/lib/lobster/core/schemas/metabolomics.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-08T00:56:37,697 copying build/lib/lobster/core/schemas/download_urls.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-08T00:56:37,700 copying build/lib/lobster/core/license_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-08T00:56:37,702 copying build/lib/lobster/core/queue_storage.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-08T00:56:37,704 copying build/lib/lobster/core/notebook_validator.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-08T00:56:37,707 copying build/lib/lobster/core/ir_coverage.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-08T00:56:37,710 copying build/lib/lobster/core/analysis_ir.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-08T00:56:37,713 creating build/bdist.linux-armv7l/wheel/lobster/lobster_cloud 2026-01-08T00:56:37,714 copying build/lib/lobster/lobster_cloud/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/lobster_cloud 2026-01-08T00:56:37,716 copying build/lib/lobster/lobster_cloud/client.py -> build/bdist.linux-armv7l/wheel/./lobster/lobster_cloud 2026-01-08T00:56:37,718 copying build/lib/lobster/version.py -> build/bdist.linux-armv7l/wheel/./lobster 2026-01-08T00:56:37,720 copying build/lib/lobster/cli.py -> build/bdist.linux-armv7l/wheel/./lobster 2026-01-08T00:56:37,727 creating build/bdist.linux-armv7l/wheel/lobster/services 2026-01-08T00:56:37,729 creating build/bdist.linux-armv7l/wheel/lobster/services/templates 2026-01-08T00:56:37,730 copying build/lib/lobster/services/templates/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/templates 2026-01-08T00:56:37,732 copying build/lib/lobster/services/templates/annotation_templates.py -> build/bdist.linux-armv7l/wheel/./lobster/services/templates 2026-01-08T00:56:37,735 creating build/bdist.linux-armv7l/wheel/lobster/services/visualization 2026-01-08T00:56:37,736 copying build/lib/lobster/services/visualization/pymol_visualization_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/visualization 2026-01-08T00:56:37,739 copying build/lib/lobster/services/visualization/visualization_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/visualization 2026-01-08T00:56:37,742 copying build/lib/lobster/services/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/visualization 2026-01-08T00:56:37,744 copying build/lib/lobster/services/visualization/bulk_visualization_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/visualization 2026-01-08T00:56:37,747 creating build/bdist.linux-armv7l/wheel/lobster/services/metadata 2026-01-08T00:56:37,748 copying build/lib/lobster/services/metadata/identifier_provenance_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata 2026-01-08T00:56:37,750 copying build/lib/lobster/services/metadata/metadata_validation_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata 2026-01-08T00:56:37,753 copying build/lib/lobster/services/metadata/metadata_standardization_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata 2026-01-08T00:56:37,756 copying build/lib/lobster/services/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata 2026-01-08T00:56:37,758 creating build/bdist.linux-armv7l/wheel/lobster/services/metadata/protocol_extraction 2026-01-08T00:56:37,759 copying build/lib/lobster/services/metadata/protocol_extraction/base.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction 2026-01-08T00:56:37,761 copying build/lib/lobster/services/metadata/protocol_extraction/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction 2026-01-08T00:56:37,764 creating build/bdist.linux-armv7l/wheel/lobster/services/metadata/protocol_extraction/amplicon 2026-01-08T00:56:37,765 copying build/lib/lobster/services/metadata/protocol_extraction/amplicon/service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/amplicon 2026-01-08T00:56:37,768 copying build/lib/lobster/services/metadata/protocol_extraction/amplicon/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/amplicon 2026-01-08T00:56:37,770 creating build/bdist.linux-armv7l/wheel/lobster/services/metadata/protocol_extraction/amplicon/resources 2026-01-08T00:56:37,771 copying build/lib/lobster/services/metadata/protocol_extraction/amplicon/resources/primers.json -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/amplicon/resources 2026-01-08T00:56:37,774 copying build/lib/lobster/services/metadata/protocol_extraction/amplicon/details.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/amplicon 2026-01-08T00:56:37,777 creating build/bdist.linux-armv7l/wheel/lobster/services/metadata/protocol_extraction/rnaseq 2026-01-08T00:56:37,778 copying build/lib/lobster/services/metadata/protocol_extraction/rnaseq/service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/rnaseq 2026-01-08T00:56:37,780 copying build/lib/lobster/services/metadata/protocol_extraction/rnaseq/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/rnaseq 2026-01-08T00:56:37,782 copying build/lib/lobster/services/metadata/protocol_extraction/rnaseq/details.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/rnaseq 2026-01-08T00:56:37,784 creating build/bdist.linux-armv7l/wheel/lobster/services/metadata/protocol_extraction/mass_spec 2026-01-08T00:56:37,785 copying build/lib/lobster/services/metadata/protocol_extraction/mass_spec/service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/mass_spec 2026-01-08T00:56:37,787 copying build/lib/lobster/services/metadata/protocol_extraction/mass_spec/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/mass_spec 2026-01-08T00:56:37,789 copying build/lib/lobster/services/metadata/protocol_extraction/mass_spec/details.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/mass_spec 2026-01-08T00:56:37,791 copying build/lib/lobster/services/metadata/manual_annotation_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata 2026-01-08T00:56:37,794 copying build/lib/lobster/services/metadata/sample_grouping_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata 2026-01-08T00:56:37,796 copying build/lib/lobster/services/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services 2026-01-08T00:56:37,798 creating build/bdist.linux-armv7l/wheel/lobster/services/quality 2026-01-08T00:56:37,799 copying build/lib/lobster/services/quality/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/quality 2026-01-08T00:56:37,801 copying build/lib/lobster/services/quality/preprocessing_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/quality 2026-01-08T00:56:37,804 copying build/lib/lobster/services/quality/quality_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/quality 2026-01-08T00:56:37,807 creating build/bdist.linux-armv7l/wheel/lobster/services/ml 2026-01-08T00:56:37,808 copying build/lib/lobster/services/ml/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/ml 2026-01-08T00:56:37,811 creating build/bdist.linux-armv7l/wheel/lobster/services/data_management 2026-01-08T00:56:37,812 copying build/lib/lobster/services/data_management/concatenation_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_management 2026-01-08T00:56:37,815 copying build/lib/lobster/services/data_management/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_management 2026-01-08T00:56:37,817 copying build/lib/lobster/services/data_management/modality_management_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_management 2026-01-08T00:56:37,820 creating build/bdist.linux-armv7l/wheel/lobster/services/orchestration 2026-01-08T00:56:37,821 copying build/lib/lobster/services/orchestration/publication_processing_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/orchestration 2026-01-08T00:56:37,825 copying build/lib/lobster/services/orchestration/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/orchestration 2026-01-08T00:56:37,827 creating build/bdist.linux-armv7l/wheel/lobster/services/analysis 2026-01-08T00:56:37,829 copying build/lib/lobster/services/analysis/structure_analysis_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-08T00:56:37,831 copying build/lib/lobster/services/analysis/pseudobulk_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-08T00:56:37,834 copying build/lib/lobster/services/analysis/enhanced_singlecell_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-08T00:56:37,838 copying build/lib/lobster/services/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-08T00:56:37,840 copying build/lib/lobster/services/analysis/bulk_rnaseq_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-08T00:56:37,844 copying build/lib/lobster/services/analysis/differential_formula_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-08T00:56:37,847 copying build/lib/lobster/services/analysis/scvi_embedding_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-08T00:56:37,850 copying build/lib/lobster/services/analysis/clustering_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-08T00:56:37,855 creating build/bdist.linux-armv7l/wheel/lobster/services/execution 2026-01-08T00:56:37,855 copying build/lib/lobster/services/execution/custom_code_execution_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/execution 2026-01-08T00:56:37,859 copying build/lib/lobster/services/execution/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/execution 2026-01-08T00:56:37,860 copying build/lib/lobster/services/execution/execution_context_builder.py -> build/bdist.linux-armv7l/wheel/./lobster/services/execution 2026-01-08T00:56:37,863 creating build/bdist.linux-armv7l/wheel/lobster/services/data_access 2026-01-08T00:56:37,864 creating build/bdist.linux-armv7l/wheel/lobster/services/data_access/geo 2026-01-08T00:56:37,866 creating build/bdist.linux-armv7l/wheel/lobster/services/data_access/geo/metadata 2026-01-08T00:56:37,867 copying build/lib/lobster/services/data_access/geo/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo/metadata 2026-01-08T00:56:37,869 copying build/lib/lobster/services/data_access/geo/strategy.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo 2026-01-08T00:56:37,871 copying build/lib/lobster/services/data_access/geo/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo 2026-01-08T00:56:37,873 copying build/lib/lobster/services/data_access/geo/facade.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo 2026-01-08T00:56:37,875 creating build/bdist.linux-armv7l/wheel/lobster/services/data_access/geo/sample 2026-01-08T00:56:37,876 copying build/lib/lobster/services/data_access/geo/sample/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo/sample 2026-01-08T00:56:37,879 creating build/bdist.linux-armv7l/wheel/lobster/services/data_access/geo/utils 2026-01-08T00:56:37,880 copying build/lib/lobster/services/data_access/geo/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo/utils 2026-01-08T00:56:37,882 copying build/lib/lobster/services/data_access/geo/downloader.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo 2026-01-08T00:56:37,884 copying build/lib/lobster/services/data_access/geo/constants.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo 2026-01-08T00:56:37,887 copying build/lib/lobster/services/data_access/geo/parser.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo 2026-01-08T00:56:37,890 creating build/bdist.linux-armv7l/wheel/lobster/services/data_access/geo/loaders 2026-01-08T00:56:37,891 copying build/lib/lobster/services/data_access/geo/loaders/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo/loaders 2026-01-08T00:56:37,893 copying build/lib/lobster/services/data_access/geo/loaders/tenx.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo/loaders 2026-01-08T00:56:37,896 copying build/lib/lobster/services/data_access/content_access_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-08T00:56:37,899 copying build/lib/lobster/services/data_access/protein_structure_fetch_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-08T00:56:37,905 copying build/lib/lobster/services/data_access/geo_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-08T00:56:37,912 copying build/lib/lobster/services/data_access/sra_download_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-08T00:56:37,915 copying build/lib/lobster/services/data_access/pride_download_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-08T00:56:37,918 copying build/lib/lobster/services/data_access/geo_fallback_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-08T00:56:37,920 copying build/lib/lobster/services/data_access/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-08T00:56:37,922 copying build/lib/lobster/services/data_access/docling_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-08T00:56:37,925 copying build/lib/lobster/services/data_access/workspace_content_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-08T00:56:37,928 copying build/lib/lobster/services/data_access/geo_download_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-08T00:56:37,931 copying build/lib/lobster/services/data_access/massive_download_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-08T00:56:37,934 creating build/bdist.linux-armv7l/wheel/lobster/agents 2026-01-08T00:56:37,936 creating build/bdist.linux-armv7l/wheel/lobster/agents/archive 2026-01-08T00:56:37,937 copying build/lib/lobster/agents/archive/research_agent_assistant.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/archive 2026-01-08T00:56:37,939 copying build/lib/lobster/agents/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-08T00:56:37,941 copying build/lib/lobster/agents/data_expert.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-08T00:56:37,944 copying build/lib/lobster/agents/draw_graph.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-08T00:56:37,946 creating build/bdist.linux-armv7l/wheel/lobster/agents/proteomics 2026-01-08T00:56:37,948 copying build/lib/lobster/agents/proteomics/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/proteomics 2026-01-08T00:56:37,949 copying build/lib/lobster/agents/proteomics/state.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/proteomics 2026-01-08T00:56:37,952 creating build/bdist.linux-armv7l/wheel/lobster/agents/transcriptomics 2026-01-08T00:56:37,953 copying build/lib/lobster/agents/transcriptomics/shared_tools.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics 2026-01-08T00:56:37,956 copying build/lib/lobster/agents/transcriptomics/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics 2026-01-08T00:56:37,958 copying build/lib/lobster/agents/transcriptomics/de_analysis_expert.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics 2026-01-08T00:56:37,961 copying build/lib/lobster/agents/transcriptomics/transcriptomics_expert.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics 2026-01-08T00:56:37,964 copying build/lib/lobster/agents/transcriptomics/annotation_expert.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics 2026-01-08T00:56:37,967 copying build/lib/lobster/agents/transcriptomics/state.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics 2026-01-08T00:56:37,969 copying build/lib/lobster/agents/visualization_expert.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-08T00:56:37,972 copying build/lib/lobster/agents/data_expert_assistant.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-08T00:56:37,974 copying build/lib/lobster/agents/supervisor.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-08T00:56:37,977 copying build/lib/lobster/agents/graph.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-08T00:56:37,980 copying build/lib/lobster/agents/state.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-08T00:56:37,983 creating build/bdist.linux-armv7l/wheel/lobster/agents/langgraph_supervisor 2026-01-08T00:56:37,984 copying build/lib/lobster/agents/langgraph_supervisor/agent_name.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/langgraph_supervisor 2026-01-08T00:56:37,986 copying build/lib/lobster/agents/langgraph_supervisor/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/langgraph_supervisor 2026-01-08T00:56:37,988 copying build/lib/lobster/agents/langgraph_supervisor/handoff.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/langgraph_supervisor 2026-01-08T00:56:37,990 copying build/lib/lobster/agents/langgraph_supervisor/supervisor.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/langgraph_supervisor 2026-01-08T00:56:37,993 copying build/lib/lobster/agents/research_agent.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-08T00:56:37,998 creating build/bdist.linux-armv7l/wheel/lobster/cli_internal 2026-01-08T00:56:37,999 copying build/lib/lobster/cli_internal/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal 2026-01-08T00:56:38,002 creating build/bdist.linux-armv7l/wheel/lobster/cli_internal/utils 2026-01-08T00:56:38,003 copying build/lib/lobster/cli_internal/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/utils 2026-01-08T00:56:38,004 copying build/lib/lobster/cli_internal/utils/path_resolution.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/utils 2026-01-08T00:56:38,007 creating build/bdist.linux-armv7l/wheel/lobster/cli_internal/commands 2026-01-08T00:56:38,008 copying build/lib/lobster/cli_internal/commands/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands 2026-01-08T00:56:38,011 copying build/lib/lobster/cli_internal/commands/output_adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands 2026-01-08T00:56:38,013 creating build/bdist.linux-armv7l/wheel/lobster/cli_internal/commands/light 2026-01-08T00:56:38,014 copying build/lib/lobster/cli_internal/commands/light/config_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light 2026-01-08T00:56:38,017 copying build/lib/lobster/cli_internal/commands/light/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light 2026-01-08T00:56:38,019 copying build/lib/lobster/cli_internal/commands/light/pipeline_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light 2026-01-08T00:56:38,021 copying build/lib/lobster/cli_internal/commands/light/workspace_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light 2026-01-08T00:56:38,024 copying build/lib/lobster/cli_internal/commands/light/file_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light 2026-01-08T00:56:38,027 copying build/lib/lobster/cli_internal/commands/light/queue_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light 2026-01-08T00:56:38,029 copying build/lib/lobster/cli_internal/commands/light/metadata_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light 2026-01-08T00:56:38,032 creating build/bdist.linux-armv7l/wheel/lobster/cli_internal/commands/heavy 2026-01-08T00:56:38,033 copying build/lib/lobster/cli_internal/commands/heavy/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/heavy 2026-01-08T00:56:38,035 copying build/lib/lobster/cli_internal/commands/heavy/visualization_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/heavy 2026-01-08T00:56:38,038 copying build/lib/lobster/cli_internal/commands/heavy/modality_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/heavy 2026-01-08T00:56:38,041 copying build/lib/lobster/cli_internal/commands/heavy/data_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/heavy 2026-01-08T00:56:38,044 creating build/bdist.linux-armv7l/wheel/lobster/ui 2026-01-08T00:56:38,045 copying build/lib/lobster/ui/commands.py -> build/bdist.linux-armv7l/wheel/./lobster/ui 2026-01-08T00:56:38,048 creating build/bdist.linux-armv7l/wheel/lobster/ui/components 2026-01-08T00:56:38,049 copying build/lib/lobster/ui/components/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/components 2026-01-08T00:56:38,051 copying build/lib/lobster/ui/components/multi_progress.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/components 2026-01-08T00:56:38,054 copying build/lib/lobster/ui/components/status_display.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/components 2026-01-08T00:56:38,056 copying build/lib/lobster/ui/components/file_tree.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/components 2026-01-08T00:56:38,059 copying build/lib/lobster/ui/components/parallel_workers_progress.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/components 2026-01-08T00:56:38,061 copying build/lib/lobster/ui/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui 2026-01-08T00:56:38,062 copying build/lib/lobster/ui/live_dashboard.py -> build/bdist.linux-armv7l/wheel/./lobster/ui 2026-01-08T00:56:38,064 copying build/lib/lobster/ui/progress_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/ui 2026-01-08T00:56:38,068 creating build/bdist.linux-armv7l/wheel/lobster/ui/callbacks 2026-01-08T00:56:38,068 copying build/lib/lobster/ui/callbacks/textual_callback.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/callbacks 2026-01-08T00:56:38,071 copying build/lib/lobster/ui/callbacks/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/callbacks 2026-01-08T00:56:38,073 creating build/bdist.linux-armv7l/wheel/lobster/ui/screens 2026-01-08T00:56:38,074 copying build/lib/lobster/ui/screens/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/screens 2026-01-08T00:56:38,076 copying build/lib/lobster/ui/screens/analysis_screen.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/screens 2026-01-08T00:56:38,079 creating build/bdist.linux-armv7l/wheel/lobster/ui/formatters 2026-01-08T00:56:38,080 copying build/lib/lobster/ui/formatters/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/formatters 2026-01-08T00:56:38,083 creating build/bdist.linux-armv7l/wheel/lobster/ui/services 2026-01-08T00:56:38,084 copying build/lib/lobster/ui/services/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/services 2026-01-08T00:56:38,086 copying build/lib/lobster/ui/services/error_service.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/services 2026-01-08T00:56:38,088 copying build/lib/lobster/ui/os_app.py -> build/bdist.linux-armv7l/wheel/./lobster/ui 2026-01-08T00:56:38,090 copying build/lib/lobster/ui/console_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/ui 2026-01-08T00:56:38,092 copying build/lib/lobster/ui/themes.py -> build/bdist.linux-armv7l/wheel/./lobster/ui 2026-01-08T00:56:38,095 creating build/bdist.linux-armv7l/wheel/lobster/ui/widgets 2026-01-08T00:56:38,096 copying build/lib/lobster/ui/widgets/connections_panel.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-08T00:56:38,098 copying build/lib/lobster/ui/widgets/error_modal.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-08T00:56:38,100 copying build/lib/lobster/ui/widgets/adapters_panel.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-08T00:56:38,102 copying build/lib/lobster/ui/widgets/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-08T00:56:38,104 copying build/lib/lobster/ui/widgets/data_hub.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-08T00:56:38,107 copying build/lib/lobster/ui/widgets/queue_status_bar.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-08T00:56:38,109 copying build/lib/lobster/ui/widgets/chat_message.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-08T00:56:38,111 copying build/lib/lobster/ui/widgets/query_prompt.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-08T00:56:38,113 copying build/lib/lobster/ui/widgets/token_usage_panel.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-08T00:56:38,115 copying build/lib/lobster/ui/widgets/activity_log.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-08T00:56:38,117 copying build/lib/lobster/ui/widgets/system_info.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-08T00:56:38,119 copying build/lib/lobster/ui/widgets/status_bar.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-08T00:56:38,122 copying build/lib/lobster/ui/widgets/agents_panel.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-08T00:56:38,124 copying build/lib/lobster/ui/widgets/results_display.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-08T00:56:38,126 copying build/lib/lobster/ui/widgets/queue_panel.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-08T00:56:38,128 copying build/lib/lobster/ui/widgets/modality_list.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-08T00:56:38,130 copying build/lib/lobster/ui/widgets/plot_preview.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-08T00:56:38,132 creating build/bdist.linux-armv7l/wheel/lobster/tools 2026-01-08T00:56:38,134 creating build/bdist.linux-armv7l/wheel/lobster/tools/archive 2026-01-08T00:56:38,135 copying build/lib/lobster/tools/archive/unified_content_service.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/archive 2026-01-08T00:56:38,138 copying build/lib/lobster/tools/archive/publication_service.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/archive 2026-01-08T00:56:38,141 copying build/lib/lobster/tools/geo_downloader.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-08T00:56:38,142 copying build/lib/lobster/tools/enhanced_handoff_tool.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-08T00:56:38,145 copying build/lib/lobster/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-08T00:56:38,147 copying build/lib/lobster/tools/workspace_tool.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-08T00:56:38,152 copying build/lib/lobster/tools/pipeline_strategy.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-08T00:56:38,154 copying build/lib/lobster/tools/handoff_tool.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-08T00:56:38,156 copying build/lib/lobster/tools/download_orchestrator.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-08T00:56:38,158 copying build/lib/lobster/tools/geo_parser.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-08T00:56:38,161 creating build/bdist.linux-armv7l/wheel/lobster/tools/providers 2026-01-08T00:56:38,162 copying build/lib/lobster/tools/providers/structure_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-08T00:56:38,164 copying build/lib/lobster/tools/providers/base_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-08T00:56:38,167 copying build/lib/lobster/tools/providers/pmc_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-08T00:56:38,170 copying build/lib/lobster/tools/providers/webpage_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-08T00:56:38,173 copying build/lib/lobster/tools/providers/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-08T00:56:38,175 copying build/lib/lobster/tools/providers/organism_enum.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-08T00:56:38,177 copying build/lib/lobster/tools/providers/abstract_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-08T00:56:38,180 copying build/lib/lobster/tools/providers/massive_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-08T00:56:38,182 copying build/lib/lobster/tools/providers/provider_registry.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-08T00:56:38,185 copying build/lib/lobster/tools/providers/pdb_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-08T00:56:38,187 copying build/lib/lobster/tools/providers/pride_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-08T00:56:38,190 copying build/lib/lobster/tools/providers/geo_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-08T00:56:38,193 copying build/lib/lobster/tools/providers/biorxiv_medrxiv_config.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-08T00:56:38,195 copying build/lib/lobster/tools/providers/sra_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-08T00:56:38,199 copying build/lib/lobster/tools/providers/biorxiv_medrxiv_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-08T00:56:38,202 copying build/lib/lobster/tools/providers/ncbi_query_builder.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-08T00:56:38,205 copying build/lib/lobster/tools/providers/publication_resolver.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-08T00:56:38,207 copying build/lib/lobster/tools/providers/pubmed_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-08T00:56:38,211 copying build/lib/lobster/tools/providers/geo_utils.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-08T00:56:38,213 copying build/lib/lobster/tools/providers/pride_normalizer.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-08T00:56:38,216 copying build/lib/lobster/tools/providers/biopython_entrez_wrapper.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-08T00:56:38,219 copying build/lib/lobster/tools/gpu_detector.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-08T00:56:38,221 copying build/lib/lobster/tools/rate_limiter.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-08T00:56:38,224 copying build/lib/lobster/tools/todo_tools.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-08T00:56:38,226 copying build/lib/lobster/tools/url_transforms.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-08T00:56:38,227 copying build/lib/lobster/tools/expert_handoff_patterns.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-08T00:56:38,230 copying build/lib/lobster/tools/expert_handoff_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-08T00:56:38,232 copying build/lib/lobster/tools/workflow_tracker.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-08T00:56:38,235 copying build/lib/lobster/tools/custom_code_tool.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-08T00:56:38,237 running install_egg_info 2026-01-08T00:56:38,243 Copying lobster_ai.egg-info to build/bdist.linux-armv7l/wheel/./lobster_ai-0.4.2.0-py3.11.egg-info 2026-01-08T00:56:38,256 running install_scripts 2026-01-08T00:56:38,270 creating build/bdist.linux-armv7l/wheel/lobster_ai-0.4.2.0.dist-info/WHEEL 2026-01-08T00:56:38,273 creating '/tmp/pip-wheel-kps_hbix/.tmp-62ny56ol/lobster_ai-0.4.2.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-01-08T00:56:38,276 adding 'lobster/__main__.py' 2026-01-08T00:56:38,277 adding 'lobster/_version.py' 2026-01-08T00:56:38,312 adding 'lobster/cli.py' 2026-01-08T00:56:38,317 adding 'lobster/main.py' 2026-01-08T00:56:38,318 adding 'lobster/version.py' 2026-01-08T00:56:38,321 adding 'lobster/agents/__init__.py' 2026-01-08T00:56:38,331 adding 'lobster/agents/data_expert.py' 2026-01-08T00:56:38,338 adding 'lobster/agents/data_expert_assistant.py' 2026-01-08T00:56:38,340 adding 'lobster/agents/draw_graph.py' 2026-01-08T00:56:38,343 adding 'lobster/agents/graph.py' 2026-01-08T00:56:38,364 adding 'lobster/agents/research_agent.py' 2026-01-08T00:56:38,368 adding 'lobster/agents/state.py' 2026-01-08T00:56:38,375 adding 'lobster/agents/supervisor.py' 2026-01-08T00:56:38,380 adding 'lobster/agents/visualization_expert.py' 2026-01-08T00:56:38,384 adding 'lobster/agents/archive/research_agent_assistant.py' 2026-01-08T00:56:38,386 adding 'lobster/agents/langgraph_supervisor/__init__.py' 2026-01-08T00:56:38,388 adding 'lobster/agents/langgraph_supervisor/agent_name.py' 2026-01-08T00:56:38,390 adding 'lobster/agents/langgraph_supervisor/handoff.py' 2026-01-08T00:56:38,393 adding 'lobster/agents/langgraph_supervisor/supervisor.py' 2026-01-08T00:56:38,395 adding 'lobster/agents/proteomics/__init__.py' 2026-01-08T00:56:38,396 adding 'lobster/agents/proteomics/state.py' 2026-01-08T00:56:38,398 adding 'lobster/agents/transcriptomics/__init__.py' 2026-01-08T00:56:38,402 adding 'lobster/agents/transcriptomics/annotation_expert.py' 2026-01-08T00:56:38,411 adding 'lobster/agents/transcriptomics/de_analysis_expert.py' 2026-01-08T00:56:38,415 adding 'lobster/agents/transcriptomics/shared_tools.py' 2026-01-08T00:56:38,417 adding 'lobster/agents/transcriptomics/state.py' 2026-01-08T00:56:38,422 adding 'lobster/agents/transcriptomics/transcriptomics_expert.py' 2026-01-08T00:56:38,424 adding 'lobster/cli_internal/__init__.py' 2026-01-08T00:56:38,426 adding 'lobster/cli_internal/commands/__init__.py' 2026-01-08T00:56:38,427 adding 'lobster/cli_internal/commands/output_adapter.py' 2026-01-08T00:56:38,429 adding 'lobster/cli_internal/commands/heavy/__init__.py' 2026-01-08T00:56:38,430 adding 'lobster/cli_internal/commands/heavy/data_commands.py' 2026-01-08T00:56:38,433 adding 'lobster/cli_internal/commands/heavy/modality_commands.py' 2026-01-08T00:56:38,435 adding 'lobster/cli_internal/commands/heavy/visualization_commands.py' 2026-01-08T00:56:38,437 adding 'lobster/cli_internal/commands/light/__init__.py' 2026-01-08T00:56:38,440 adding 'lobster/cli_internal/commands/light/config_commands.py' 2026-01-08T00:56:38,443 adding 'lobster/cli_internal/commands/light/file_commands.py' 2026-01-08T00:56:38,445 adding 'lobster/cli_internal/commands/light/metadata_commands.py' 2026-01-08T00:56:38,447 adding 'lobster/cli_internal/commands/light/pipeline_commands.py' 2026-01-08T00:56:38,449 adding 'lobster/cli_internal/commands/light/queue_commands.py' 2026-01-08T00:56:38,453 adding 'lobster/cli_internal/commands/light/workspace_commands.py' 2026-01-08T00:56:38,455 adding 'lobster/cli_internal/utils/__init__.py' 2026-01-08T00:56:38,457 adding 'lobster/cli_internal/utils/path_resolution.py' 2026-01-08T00:56:38,459 adding 'lobster/config/__init__.py' 2026-01-08T00:56:38,461 adding 'lobster/config/agent_capabilities.py' 2026-01-08T00:56:38,464 adding 'lobster/config/agent_config.py' 2026-01-08T00:56:38,466 adding 'lobster/config/agent_registry.py' 2026-01-08T00:56:38,467 adding 'lobster/config/base_config.py' 2026-01-08T00:56:38,469 adding 'lobster/config/config_manager.py' 2026-01-08T00:56:38,471 adding 'lobster/config/constants.py' 2026-01-08T00:56:38,472 adding 'lobster/config/global_config.py' 2026-01-08T00:56:38,474 adding 'lobster/config/llm_factory.py' 2026-01-08T00:56:38,476 adding 'lobster/config/model_service.py' 2026-01-08T00:56:38,477 adding 'lobster/config/ollama_service.py' 2026-01-08T00:56:38,479 adding 'lobster/config/provider_setup.py' 2026-01-08T00:56:38,481 adding 'lobster/config/settings.py' 2026-01-08T00:56:38,483 adding 'lobster/config/ssl_setup.py' 2026-01-08T00:56:38,485 adding 'lobster/config/subscription_tiers.py' 2026-01-08T00:56:38,487 adding 'lobster/config/supervisor_config.py' 2026-01-08T00:56:38,488 adding 'lobster/config/workspace_config.py' 2026-01-08T00:56:38,490 adding 'lobster/config/providers/__init__.py' 2026-01-08T00:56:38,492 adding 'lobster/config/providers/anthropic_provider.py' 2026-01-08T00:56:38,494 adding 'lobster/config/providers/base_provider.py' 2026-01-08T00:56:38,496 adding 'lobster/config/providers/bedrock_provider.py' 2026-01-08T00:56:38,498 adding 'lobster/config/providers/gemini_provider.py' 2026-01-08T00:56:38,500 adding 'lobster/config/providers/ollama_provider.py' 2026-01-08T00:56:38,502 adding 'lobster/config/providers/registry.py' 2026-01-08T00:56:38,504 adding 'lobster/core/__init__.py' 2026-01-08T00:56:38,506 adding 'lobster/core/analysis_ir.py' 2026-01-08T00:56:38,509 adding 'lobster/core/archive_utils.py' 2026-01-08T00:56:38,519 adding 'lobster/core/client.py' 2026-01-08T00:56:38,521 adding 'lobster/core/component_registry.py' 2026-01-08T00:56:38,524 adding 'lobster/core/config_resolver.py' 2026-01-08T00:56:38,537 adding 'lobster/core/data_manager_v2.py' 2026-01-08T00:56:38,540 adding 'lobster/core/download_queue.py' 2026-01-08T00:56:38,541 adding 'lobster/core/exceptions.py' 2026-01-08T00:56:38,543 adding 'lobster/core/ir_coverage.py' 2026-01-08T00:56:38,546 adding 'lobster/core/license_manager.py' 2026-01-08T00:56:38,548 adding 'lobster/core/notebook_executor.py' 2026-01-08T00:56:38,552 adding 'lobster/core/notebook_exporter.py' 2026-01-08T00:56:38,554 adding 'lobster/core/notebook_validator.py' 2026-01-08T00:56:38,557 adding 'lobster/core/plot_manager.py' 2026-01-08T00:56:38,559 adding 'lobster/core/plugin_loader.py' 2026-01-08T00:56:38,561 adding 'lobster/core/provenance.py' 2026-01-08T00:56:38,563 adding 'lobster/core/publication_queue.py' 2026-01-08T00:56:38,565 adding 'lobster/core/queue_storage.py' 2026-01-08T00:56:38,567 adding 'lobster/core/ris_parser.py' 2026-01-08T00:56:38,568 adding 'lobster/core/workspace.py' 2026-01-08T00:56:38,570 adding 'lobster/core/adapters/__init__.py' 2026-01-08T00:56:38,573 adding 'lobster/core/adapters/base.py' 2026-01-08T00:56:38,575 adding 'lobster/core/adapters/protein_structure_adapter.py' 2026-01-08T00:56:38,578 adding 'lobster/core/adapters/proteomics_adapter.py' 2026-01-08T00:56:38,581 adding 'lobster/core/adapters/pseudobulk_adapter.py' 2026-01-08T00:56:38,584 adding 'lobster/core/adapters/transcriptomics_adapter.py' 2026-01-08T00:56:38,586 adding 'lobster/core/backends/__init__.py' 2026-01-08T00:56:38,588 adding 'lobster/core/backends/base.py' 2026-01-08T00:56:38,592 adding 'lobster/core/backends/h5ad_backend.py' 2026-01-08T00:56:38,594 adding 'lobster/core/backends/mudata_backend.py' 2026-01-08T00:56:38,596 adding 'lobster/core/identifiers/__init__.py' 2026-01-08T00:56:38,598 adding 'lobster/core/identifiers/accession_resolver.py' 2026-01-08T00:56:38,600 adding 'lobster/core/interfaces/__init__.py' 2026-01-08T00:56:38,602 adding 'lobster/core/interfaces/adapter.py' 2026-01-08T00:56:38,604 adding 'lobster/core/interfaces/backend.py' 2026-01-08T00:56:38,605 adding 'lobster/core/interfaces/base_client.py' 2026-01-08T00:56:38,607 adding 'lobster/core/interfaces/download_service.py' 2026-01-08T00:56:38,609 adding 'lobster/core/interfaces/validator.py' 2026-01-08T00:56:38,611 adding 'lobster/core/schemas/__init__.py' 2026-01-08T00:56:38,614 adding 'lobster/core/schemas/database_mappings.py' 2026-01-08T00:56:38,616 adding 'lobster/core/schemas/database_registry.py' 2026-01-08T00:56:38,618 adding 'lobster/core/schemas/download_queue.py' 2026-01-08T00:56:38,620 adding 'lobster/core/schemas/download_urls.py' 2026-01-08T00:56:38,625 adding 'lobster/core/schemas/export_schemas.py' 2026-01-08T00:56:38,629 adding 'lobster/core/schemas/metabolomics.py' 2026-01-08T00:56:38,635 adding 'lobster/core/schemas/metagenomics.py' 2026-01-08T00:56:38,637 adding 'lobster/core/schemas/protein_structure.py' 2026-01-08T00:56:38,641 adding 'lobster/core/schemas/proteomics.py' 2026-01-08T00:56:38,644 adding 'lobster/core/schemas/publication_queue.py' 2026-01-08T00:56:38,648 adding 'lobster/core/schemas/sra.py' 2026-01-08T00:56:38,655 adding 'lobster/core/schemas/transcriptomics.py' 2026-01-08T00:56:38,658 adding 'lobster/core/schemas/validation.py' 2026-01-08T00:56:38,659 adding 'lobster/core/utils/__init__.py' 2026-01-08T00:56:38,662 adding 'lobster/core/utils/h5ad_utils.py' 2026-01-08T00:56:38,663 adding 'lobster/lobster_cloud/__init__.py' 2026-01-08T00:56:38,665 adding 'lobster/lobster_cloud/client.py' 2026-01-08T00:56:38,667 adding 'lobster/services/__init__.py' 2026-01-08T00:56:38,669 adding 'lobster/services/analysis/__init__.py' 2026-01-08T00:56:38,677 adding 'lobster/services/analysis/bulk_rnaseq_service.py' 2026-01-08T00:56:38,687 adding 'lobster/services/analysis/clustering_service.py' 2026-01-08T00:56:38,691 adding 'lobster/services/analysis/differential_formula_service.py' 2026-01-08T00:56:38,697 adding 'lobster/services/analysis/enhanced_singlecell_service.py' 2026-01-08T00:56:38,701 adding 'lobster/services/analysis/pseudobulk_service.py' 2026-01-08T00:56:38,703 adding 'lobster/services/analysis/scvi_embedding_service.py' 2026-01-08T00:56:38,706 adding 'lobster/services/analysis/structure_analysis_service.py' 2026-01-08T00:56:38,708 adding 'lobster/services/data_access/__init__.py' 2026-01-08T00:56:38,716 adding 'lobster/services/data_access/content_access_service.py' 2026-01-08T00:56:38,723 adding 'lobster/services/data_access/docling_service.py' 2026-01-08T00:56:38,726 adding 'lobster/services/data_access/geo_download_service.py' 2026-01-08T00:56:38,729 adding 'lobster/services/data_access/geo_fallback_service.py' 2026-01-08T00:56:38,752 adding 'lobster/services/data_access/geo_service.py' 2026-01-08T00:56:38,757 adding 'lobster/services/data_access/massive_download_service.py' 2026-01-08T00:56:38,759 adding 'lobster/services/data_access/pride_download_service.py' 2026-01-08T00:56:38,762 adding 'lobster/services/data_access/protein_structure_fetch_service.py' 2026-01-08T00:56:38,766 adding 'lobster/services/data_access/sra_download_service.py' 2026-01-08T00:56:38,771 adding 'lobster/services/data_access/workspace_content_service.py' 2026-01-08T00:56:38,773 adding 'lobster/services/data_access/geo/__init__.py' 2026-01-08T00:56:38,775 adding 'lobster/services/data_access/geo/constants.py' 2026-01-08T00:56:38,779 adding 'lobster/services/data_access/geo/downloader.py' 2026-01-08T00:56:38,780 adding 'lobster/services/data_access/geo/facade.py' 2026-01-08T00:56:38,788 adding 'lobster/services/data_access/geo/parser.py' 2026-01-08T00:56:38,790 adding 'lobster/services/data_access/geo/strategy.py' 2026-01-08T00:56:38,792 adding 'lobster/services/data_access/geo/loaders/__init__.py' 2026-01-08T00:56:38,794 adding 'lobster/services/data_access/geo/loaders/tenx.py' 2026-01-08T00:56:38,796 adding 'lobster/services/data_access/geo/metadata/__init__.py' 2026-01-08T00:56:38,797 adding 'lobster/services/data_access/geo/sample/__init__.py' 2026-01-08T00:56:38,799 adding 'lobster/services/data_access/geo/utils/__init__.py' 2026-01-08T00:56:38,801 adding 'lobster/services/data_management/__init__.py' 2026-01-08T00:56:38,806 adding 'lobster/services/data_management/concatenation_service.py' 2026-01-08T00:56:38,808 adding 'lobster/services/data_management/modality_management_service.py' 2026-01-08T00:56:38,810 adding 'lobster/services/execution/__init__.py' 2026-01-08T00:56:38,814 adding 'lobster/services/execution/custom_code_execution_service.py' 2026-01-08T00:56:38,816 adding 'lobster/services/execution/execution_context_builder.py' 2026-01-08T00:56:38,818 adding 'lobster/services/metadata/__init__.py' 2026-01-08T00:56:38,820 adding 'lobster/services/metadata/identifier_provenance_service.py' 2026-01-08T00:56:38,824 adding 'lobster/services/metadata/manual_annotation_service.py' 2026-01-08T00:56:38,827 adding 'lobster/services/metadata/metadata_standardization_service.py' 2026-01-08T00:56:38,830 adding 'lobster/services/metadata/metadata_validation_service.py' 2026-01-08T00:56:38,832 adding 'lobster/services/metadata/sample_grouping_service.py' 2026-01-08T00:56:38,835 adding 'lobster/services/metadata/protocol_extraction/__init__.py' 2026-01-08T00:56:38,836 adding 'lobster/services/metadata/protocol_extraction/base.py' 2026-01-08T00:56:38,838 adding 'lobster/services/metadata/protocol_extraction/amplicon/__init__.py' 2026-01-08T00:56:38,840 adding 'lobster/services/metadata/protocol_extraction/amplicon/details.py' 2026-01-08T00:56:38,843 adding 'lobster/services/metadata/protocol_extraction/amplicon/service.py' 2026-01-08T00:56:38,845 adding 'lobster/services/metadata/protocol_extraction/amplicon/resources/primers.json' 2026-01-08T00:56:38,847 adding 'lobster/services/metadata/protocol_extraction/mass_spec/__init__.py' 2026-01-08T00:56:38,848 adding 'lobster/services/metadata/protocol_extraction/mass_spec/details.py' 2026-01-08T00:56:38,850 adding 'lobster/services/metadata/protocol_extraction/mass_spec/service.py' 2026-01-08T00:56:38,851 adding 'lobster/services/metadata/protocol_extraction/rnaseq/__init__.py' 2026-01-08T00:56:38,853 adding 'lobster/services/metadata/protocol_extraction/rnaseq/details.py' 2026-01-08T00:56:38,854 adding 'lobster/services/metadata/protocol_extraction/rnaseq/service.py' 2026-01-08T00:56:38,856 adding 'lobster/services/ml/__init__.py' 2026-01-08T00:56:38,857 adding 'lobster/services/orchestration/__init__.py' 2026-01-08T00:56:38,866 adding 'lobster/services/orchestration/publication_processing_service.py' 2026-01-08T00:56:38,868 adding 'lobster/services/quality/__init__.py' 2026-01-08T00:56:38,872 adding 'lobster/services/quality/preprocessing_service.py' 2026-01-08T00:56:38,876 adding 'lobster/services/quality/quality_service.py' 2026-01-08T00:56:38,878 adding 'lobster/services/templates/__init__.py' 2026-01-08T00:56:38,883 adding 'lobster/services/templates/annotation_templates.py' 2026-01-08T00:56:38,884 adding 'lobster/services/visualization/__init__.py' 2026-01-08T00:56:38,888 adding 'lobster/services/visualization/bulk_visualization_service.py' 2026-01-08T00:56:38,892 adding 'lobster/services/visualization/pymol_visualization_service.py' 2026-01-08T00:56:38,899 adding 'lobster/services/visualization/visualization_service.py' 2026-01-08T00:56:38,902 adding 'lobster/tools/__init__.py' 2026-01-08T00:56:38,904 adding 'lobster/tools/custom_code_tool.py' 2026-01-08T00:56:38,906 adding 'lobster/tools/download_orchestrator.py' 2026-01-08T00:56:38,909 adding 'lobster/tools/enhanced_handoff_tool.py' 2026-01-08T00:56:38,911 adding 'lobster/tools/expert_handoff_manager.py' 2026-01-08T00:56:38,913 adding 'lobster/tools/expert_handoff_patterns.py' 2026-01-08T00:56:38,914 adding 'lobster/tools/geo_downloader.py' 2026-01-08T00:56:38,915 adding 'lobster/tools/geo_parser.py' 2026-01-08T00:56:38,917 adding 'lobster/tools/gpu_detector.py' 2026-01-08T00:56:38,919 adding 'lobster/tools/handoff_tool.py' 2026-01-08T00:56:38,920 adding 'lobster/tools/pipeline_strategy.py' 2026-01-08T00:56:38,925 adding 'lobster/tools/rate_limiter.py' 2026-01-08T00:56:38,927 adding 'lobster/tools/todo_tools.py' 2026-01-08T00:56:38,929 adding 'lobster/tools/url_transforms.py' 2026-01-08T00:56:38,932 adding 'lobster/tools/workflow_tracker.py' 2026-01-08T00:56:38,944 adding 'lobster/tools/workspace_tool.py' 2026-01-08T00:56:38,948 adding 'lobster/tools/archive/publication_service.py' 2026-01-08T00:56:38,951 adding 'lobster/tools/archive/unified_content_service.py' 2026-01-08T00:56:38,953 adding 'lobster/tools/providers/__init__.py' 2026-01-08T00:56:38,955 adding 'lobster/tools/providers/abstract_provider.py' 2026-01-08T00:56:38,957 adding 'lobster/tools/providers/base_provider.py' 2026-01-08T00:56:38,959 adding 'lobster/tools/providers/biopython_entrez_wrapper.py' 2026-01-08T00:56:38,961 adding 'lobster/tools/providers/biorxiv_medrxiv_config.py' 2026-01-08T00:56:38,967 adding 'lobster/tools/providers/biorxiv_medrxiv_provider.py' 2026-01-08T00:56:38,974 adding 'lobster/tools/providers/geo_provider.py' 2026-01-08T00:56:38,976 adding 'lobster/tools/providers/geo_utils.py' 2026-01-08T00:56:38,979 adding 'lobster/tools/providers/massive_provider.py' 2026-01-08T00:56:38,982 adding 'lobster/tools/providers/ncbi_query_builder.py' 2026-01-08T00:56:38,983 adding 'lobster/tools/providers/organism_enum.py' 2026-01-08T00:56:38,986 adding 'lobster/tools/providers/pdb_provider.py' 2026-01-08T00:56:38,992 adding 'lobster/tools/providers/pmc_provider.py' 2026-01-08T00:56:38,995 adding 'lobster/tools/providers/pride_normalizer.py' 2026-01-08T00:56:38,998 adding 'lobster/tools/providers/pride_provider.py' 2026-01-08T00:56:39,000 adding 'lobster/tools/providers/provider_registry.py' 2026-01-08T00:56:39,003 adding 'lobster/tools/providers/publication_resolver.py' 2026-01-08T00:56:39,013 adding 'lobster/tools/providers/pubmed_provider.py' 2026-01-08T00:56:39,019 adding 'lobster/tools/providers/sra_provider.py' 2026-01-08T00:56:39,021 adding 'lobster/tools/providers/structure_provider.py' 2026-01-08T00:56:39,023 adding 'lobster/tools/providers/webpage_provider.py' 2026-01-08T00:56:39,025 adding 'lobster/ui/__init__.py' 2026-01-08T00:56:39,028 adding 'lobster/ui/commands.py' 2026-01-08T00:56:39,030 adding 'lobster/ui/console_manager.py' 2026-01-08T00:56:39,032 adding 'lobster/ui/live_dashboard.py' 2026-01-08T00:56:39,033 adding 'lobster/ui/os_app.py' 2026-01-08T00:56:39,036 adding 'lobster/ui/progress_manager.py' 2026-01-08T00:56:39,038 adding 'lobster/ui/themes.py' 2026-01-08T00:56:39,039 adding 'lobster/ui/callbacks/__init__.py' 2026-01-08T00:56:39,042 adding 'lobster/ui/callbacks/textual_callback.py' 2026-01-08T00:56:39,044 adding 'lobster/ui/components/__init__.py' 2026-01-08T00:56:39,046 adding 'lobster/ui/components/file_tree.py' 2026-01-08T00:56:39,048 adding 'lobster/ui/components/multi_progress.py' 2026-01-08T00:56:39,050 adding 'lobster/ui/components/parallel_workers_progress.py' 2026-01-08T00:56:39,053 adding 'lobster/ui/components/status_display.py' 2026-01-08T00:56:39,055 adding 'lobster/ui/formatters/__init__.py' 2026-01-08T00:56:39,056 adding 'lobster/ui/screens/__init__.py' 2026-01-08T00:56:39,060 adding 'lobster/ui/screens/analysis_screen.py' 2026-01-08T00:56:39,061 adding 'lobster/ui/services/__init__.py' 2026-01-08T00:56:39,063 adding 'lobster/ui/services/error_service.py' 2026-01-08T00:56:39,065 adding 'lobster/ui/widgets/__init__.py' 2026-01-08T00:56:39,067 adding 'lobster/ui/widgets/activity_log.py' 2026-01-08T00:56:39,068 adding 'lobster/ui/widgets/adapters_panel.py' 2026-01-08T00:56:39,070 adding 'lobster/ui/widgets/agents_panel.py' 2026-01-08T00:56:39,071 adding 'lobster/ui/widgets/chat_message.py' 2026-01-08T00:56:39,072 adding 'lobster/ui/widgets/connections_panel.py' 2026-01-08T00:56:39,075 adding 'lobster/ui/widgets/data_hub.py' 2026-01-08T00:56:39,077 adding 'lobster/ui/widgets/error_modal.py' 2026-01-08T00:56:39,079 adding 'lobster/ui/widgets/modality_list.py' 2026-01-08T00:56:39,080 adding 'lobster/ui/widgets/plot_preview.py' 2026-01-08T00:56:39,082 adding 'lobster/ui/widgets/query_prompt.py' 2026-01-08T00:56:39,083 adding 'lobster/ui/widgets/queue_panel.py' 2026-01-08T00:56:39,085 adding 'lobster/ui/widgets/queue_status_bar.py' 2026-01-08T00:56:39,086 adding 'lobster/ui/widgets/results_display.py' 2026-01-08T00:56:39,088 adding 'lobster/ui/widgets/status_bar.py' 2026-01-08T00:56:39,089 adding 'lobster/ui/widgets/system_info.py' 2026-01-08T00:56:39,091 adding 'lobster/ui/widgets/token_usage_panel.py' 2026-01-08T00:56:39,093 adding 'lobster/utils/__init__.py' 2026-01-08T00:56:39,099 adding 'lobster/utils/callbacks.py' 2026-01-08T00:56:39,100 adding 'lobster/utils/deviance.py' 2026-01-08T00:56:39,103 adding 'lobster/utils/error_handlers.py' 2026-01-08T00:56:39,105 adding 'lobster/utils/file_analyzer.py' 2026-01-08T00:56:39,107 adding 'lobster/utils/file_naming.py' 2026-01-08T00:56:39,109 adding 'lobster/utils/json_extractor.py' 2026-01-08T00:56:39,110 adding 'lobster/utils/logger.py' 2026-01-08T00:56:39,112 adding 'lobster/utils/progress_wrapper.py' 2026-01-08T00:56:39,114 adding 'lobster/utils/ssl_utils.py' 2026-01-08T00:56:39,115 adding 'lobster/utils/system.py' 2026-01-08T00:56:39,123 adding 'lobster_ai-0.4.2.0.dist-info/licenses/LICENSE' 2026-01-08T00:56:39,125 adding 'lobster_ai-0.4.2.0.dist-info/METADATA' 2026-01-08T00:56:39,127 adding 'lobster_ai-0.4.2.0.dist-info/WHEEL' 2026-01-08T00:56:39,128 adding 'lobster_ai-0.4.2.0.dist-info/entry_points.txt' 2026-01-08T00:56:39,128 adding 'lobster_ai-0.4.2.0.dist-info/top_level.txt' 2026-01-08T00:56:39,133 adding 'lobster_ai-0.4.2.0.dist-info/RECORD' 2026-01-08T00:56:39,150 removing build/bdist.linux-armv7l/wheel 2026-01-08T00:56:39,334 Building wheel for lobster-ai (pyproject.toml): finished with status 'done' 2026-01-08T00:56:39,367 Created wheel for lobster-ai: filename=lobster_ai-0.4.2.0-py3-none-any.whl size=1355363 sha256=8b528935140ed2a0892bdb40f7b66fd20543c14b105e7ff0a3553082014d6290 2026-01-08T00:56:39,368 Stored in directory: /tmp/pip-ephem-wheel-cache-6m7j3qwi/wheels/0e/22/32/f1f9244d6ce01659bec34dbcfbb027794e25404ad2e4f00fec 2026-01-08T00:56:39,395 Successfully built lobster-ai 2026-01-08T00:56:39,439 Removed build tracker: '/tmp/pip-build-tracker-s6fgs139'