2026-01-08T13:11:22,299 Created temporary directory: /tmp/pip-ephem-wheel-cache-kwuaa1ie 2026-01-08T13:11:22,301 Created temporary directory: /tmp/pip-build-tracker-ririni8q 2026-01-08T13:11:22,302 Initialized build tracking at /tmp/pip-build-tracker-ririni8q 2026-01-08T13:11:22,302 Created build tracker: /tmp/pip-build-tracker-ririni8q 2026-01-08T13:11:22,303 Entered build tracker: /tmp/pip-build-tracker-ririni8q 2026-01-08T13:11:22,304 Created temporary directory: /tmp/pip-wheel-g2lvttw3 2026-01-08T13:11:22,306 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-01-08T13:11:22,309 Created temporary directory: /tmp/pip-ephem-wheel-cache-ikopeiy7 2026-01-08T13:11:22,331 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-01-08T13:11:22,334 2 location(s) to search for versions of scipion-em-xmipp: 2026-01-08T13:11:22,334 * https://pypi.org/simple/scipion-em-xmipp/ 2026-01-08T13:11:22,334 * https://www.piwheels.org/simple/scipion-em-xmipp/ 2026-01-08T13:11:22,335 Fetching project page and analyzing links: https://pypi.org/simple/scipion-em-xmipp/ 2026-01-08T13:11:22,336 Getting page https://pypi.org/simple/scipion-em-xmipp/ 2026-01-08T13:11:22,337 Found index url https://pypi.org/simple 2026-01-08T13:11:22,554 Fetched page https://pypi.org/simple/scipion-em-xmipp/ as application/vnd.pypi.simple.v1+json 2026-01-08T13:11:22,569 Found link 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Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/3c/c8/ed4b6aadb9633b540b6e9346770f9f91720d2d29e235429498ab07df8d61/scipion_em_xmipp-23.11.0.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/) 2026-01-08T13:11:22,615 Found link https://files.pythonhosted.org/packages/f7/31/a0154ef1de37fcd44f21df54dce1bcd0ce424343407d59bd13d88399ffdd/scipion-em-xmipp-24.6.0.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 24.6.0.0 2026-01-08T13:11:22,615 Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/63/b2/5ca583d8073d12fa9f058fc6dc2b94b3c23a047e7a53c070f00d45a99e5d/scipion_em_xmipp-24.6.0.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/) 2026-01-08T13:11:22,616 Found link https://files.pythonhosted.org/packages/8e/59/1b8f32e2023baa544de460d57507b0b5de40fdae1b93ea7d10bcb3506a9b/scipion-em-xmipp-24.12.2.tar.gz (from 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https://files.pythonhosted.org/packages/7a/b5/a22cb3670513caa0624ef548caa0554aea711949d4f38d6bbde3cdb8560b/scipion_em_xmipp-25.6.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8) 2026-01-08T13:11:22,620 Found link https://files.pythonhosted.org/packages/c1/50/f384e19d33b6a6cf39ae16afa1bc890a66ad8c03100e89228518fad0002e/scipion_em_xmipp-25.6.1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8), version: 25.6.1 2026-01-08T13:11:22,621 Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/e5/98/8143dd6ccebf3ff2798a69e361c03a08a85ad63b2e7978e3d7314b63b5d4/scipion_em_xmipp-26.0.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8) 2026-01-08T13:11:22,622 Found link https://files.pythonhosted.org/packages/04/c5/1b430c39044634fccdcc06d491953043bc19b1c0e3ff27fd492c45ce5e9f/scipion_em_xmipp-26.0.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8), version: 26.0.0 2026-01-08T13:11:22,622 Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/de/67/938bbc9118052615cdc205c07f93495aa59478a84d6aedbf2d7517c86547/scipion_em_xmipp-26.0.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8) 2026-01-08T13:11:22,623 Found link https://files.pythonhosted.org/packages/7b/92/3c6ab9e66f5527444a60372e642424c5132687b17db8e0d7cea81c0b859f/scipion_em_xmipp-26.0.1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8), version: 26.0.1 2026-01-08T13:11:22,624 Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/fd/2f/9e5e93577db279ff1f27d7a6c549d1f63b608d58d7647988aa09d80cd82a/scipion_em_xmipp-26.0.2-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8) 2026-01-08T13:11:22,625 Found link https://files.pythonhosted.org/packages/7d/5d/c9de1cb42db2cef7b4301f748b1fa3eea7895a0d678af03f4824b15b0e5a/scipion_em_xmipp-26.0.2.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8), version: 26.0.2 2026-01-08T13:11:22,626 Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/a2/3c/37c20eb89b65e3203c1826aef488171041fe90bfccf121bfff036a682fc9/scipion_em_xmipp-26.1.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8) 2026-01-08T13:11:22,626 Found link https://files.pythonhosted.org/packages/1d/c0/922d6d59b584994412f93af6f2ec1fddd92e64735e77f0b73fc93d8d1704/scipion_em_xmipp-26.1.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8), version: 26.1.0 2026-01-08T13:11:22,627 Fetching project page and analyzing links: https://www.piwheels.org/simple/scipion-em-xmipp/ 2026-01-08T13:11:22,628 Getting page https://www.piwheels.org/simple/scipion-em-xmipp/ 2026-01-08T13:11:22,629 Found index url https://www.piwheels.org/simple 2026-01-08T13:11:22,793 Fetched page https://www.piwheels.org/simple/scipion-em-xmipp/ as text/html 2026-01-08T13:11:22,800 Skipping link: No binaries permitted for scipion-em-xmipp: https://www.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-26.0.2-py3-none-any.whl#sha256=0ffb844afc573b3b653c8735d1c40f1755e5fc9e4398d67b8f3eaf7dc8f8fe6e (from https://www.piwheels.org/simple/scipion-em-xmipp/) (requires-python:>=3.8) 2026-01-08T13:11:22,801 Skipping link: No binaries permitted for scipion-em-xmipp: https://www.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-26.0.1-py3-none-any.whl#sha256=cdaf6d4c7a56851b5454ae7a87c4b94bf84acf0a5c420012aeaeb685605ead72 (from https://www.piwheels.org/simple/scipion-em-xmipp/) (requires-python:>=3.8) 2026-01-08T13:11:22,801 Skipping link: No binaries permitted for scipion-em-xmipp: 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https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-1.0.0b1-py3-none-any.whl#sha256=6d36929f4411ac1ff69548230bf74d77c4cc75e68aead196203186fb26094e49 (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-01-08T13:11:22,813 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-1.0.0a1-py3-none-any.whl#sha256=c088df2fbccef99c06f812beb1584e487375276c582430f35a8a78620ea3a41f (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-01-08T13:11:22,814 Skipping link: not a file: https://www.piwheels.org/simple/scipion-em-xmipp/ 2026-01-08T13:11:22,814 Skipping link: not a file: https://pypi.org/simple/scipion-em-xmipp/ 2026-01-08T13:11:22,838 Given no hashes to check 1 links for project 'scipion-em-xmipp': discarding no candidates 2026-01-08T13:11:22,856 Collecting scipion-em-xmipp==26.1.0 2026-01-08T13:11:22,859 Created temporary directory: /tmp/pip-unpack-rnwvsq39 2026-01-08T13:11:22,990 Downloading scipion_em_xmipp-26.1.0.tar.gz (1.5 MB) 2026-01-08T13:11:23,840 Added scipion-em-xmipp==26.1.0 from https://files.pythonhosted.org/packages/1d/c0/922d6d59b584994412f93af6f2ec1fddd92e64735e77f0b73fc93d8d1704/scipion_em_xmipp-26.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-ririni8q' 2026-01-08T13:11:23,844 Created temporary directory: /tmp/pip-build-env-e5ff_lfz 2026-01-08T13:11:23,849 Installing build dependencies: started 2026-01-08T13:11:23,850 Running command pip subprocess to install build dependencies 2026-01-08T13:11:24,984 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-01-08T13:11:25,563 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-01-08T13:11:25,586 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-01-08T13:11:27,300 Collecting setuptools 2026-01-08T13:11:27,415 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2026-01-08T13:11:30,426 Installing collected packages: setuptools 2026-01-08T13:11:34,090 Successfully installed setuptools-80.9.0 2026-01-08T13:11:34,356 Installing build dependencies: finished with status 'done' 2026-01-08T13:11:34,363 Getting requirements to build wheel: started 2026-01-08T13:11:34,364 Running command Getting requirements to build wheel 2026-01-08T13:11:34,958 No `packages` or `py_modules` configuration, performing automatic discovery. 2026-01-08T13:11:34,958 `flat-layout` detected -- analysing . 2026-01-08T13:11:34,983 discovered packages -- ['xmipp3', 'xmipp3.convert', 'xmipp3.protocols', 'xmipp3.viewers', 'xmipp3.legacy', 'xmipp3.tests', 'xmipp3.protocols.protocol_preprocess', 'xmipp3.protocols.protocol_projmatch', 'xmipp3.legacy.protocols', 'xmipp3.legacy.viewers', 'xmipp3.legacy.tests'] 2026-01-08T13:11:34,988 /tmp/pip-build-env-e5ff_lfz/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-01-08T13:11:34,989 !! 2026-01-08T13:11:34,990 ******************************************************************************** 2026-01-08T13:11:34,991 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-01-08T13:11:34,992 By 2026-Feb-18, you need to update your project and remove deprecated calls 2026-01-08T13:11:34,992 or your builds will no longer be supported. 2026-01-08T13:11:34,994 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-01-08T13:11:34,994 ******************************************************************************** 2026-01-08T13:11:34,995 !! 2026-01-08T13:11:34,996 corresp(dist, value, root_dir) 2026-01-08T13:11:35,084 running egg_info 2026-01-08T13:11:35,091 writing scipion_em_xmipp.egg-info/PKG-INFO 2026-01-08T13:11:35,094 writing dependency_links to scipion_em_xmipp.egg-info/dependency_links.txt 2026-01-08T13:11:35,096 writing entry points to scipion_em_xmipp.egg-info/entry_points.txt 2026-01-08T13:11:35,097 writing requirements to scipion_em_xmipp.egg-info/requires.txt 2026-01-08T13:11:35,099 writing top-level names to scipion_em_xmipp.egg-info/top_level.txt 2026-01-08T13:11:35,141 reading manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt' 2026-01-08T13:11:35,156 reading manifest template 'MANIFEST.in' 2026-01-08T13:11:35,159 adding license file 'LICENSE' 2026-01-08T13:11:35,172 writing manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt' 2026-01-08T13:11:35,271 Getting requirements to build wheel: finished with status 'done' 2026-01-08T13:11:35,275 Created temporary directory: /tmp/pip-modern-metadata-emlmzo69 2026-01-08T13:11:35,277 Preparing metadata (pyproject.toml): started 2026-01-08T13:11:35,278 Running command Preparing metadata (pyproject.toml) 2026-01-08T13:11:35,833 No `packages` or `py_modules` configuration, performing automatic discovery. 2026-01-08T13:11:35,833 `flat-layout` detected -- analysing . 2026-01-08T13:11:35,852 discovered packages -- ['xmipp3', 'xmipp3.convert', 'xmipp3.protocols', 'xmipp3.viewers', 'xmipp3.legacy', 'xmipp3.tests', 'xmipp3.protocols.protocol_preprocess', 'xmipp3.protocols.protocol_projmatch', 'xmipp3.legacy.protocols', 'xmipp3.legacy.viewers', 'xmipp3.legacy.tests'] 2026-01-08T13:11:35,857 /tmp/pip-build-env-e5ff_lfz/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-01-08T13:11:35,857 !! 2026-01-08T13:11:35,859 ******************************************************************************** 2026-01-08T13:11:35,859 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-01-08T13:11:35,860 By 2026-Feb-18, you need to update your project and remove deprecated calls 2026-01-08T13:11:35,861 or your builds will no longer be supported. 2026-01-08T13:11:35,862 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-01-08T13:11:35,863 ******************************************************************************** 2026-01-08T13:11:35,864 !! 2026-01-08T13:11:35,864 corresp(dist, value, root_dir) 2026-01-08T13:11:35,948 running dist_info 2026-01-08T13:11:35,960 creating /tmp/pip-modern-metadata-emlmzo69/scipion_em_xmipp.egg-info 2026-01-08T13:11:35,961 writing /tmp/pip-modern-metadata-emlmzo69/scipion_em_xmipp.egg-info/PKG-INFO 2026-01-08T13:11:35,965 writing dependency_links to /tmp/pip-modern-metadata-emlmzo69/scipion_em_xmipp.egg-info/dependency_links.txt 2026-01-08T13:11:35,966 writing entry points to /tmp/pip-modern-metadata-emlmzo69/scipion_em_xmipp.egg-info/entry_points.txt 2026-01-08T13:11:35,968 writing requirements to /tmp/pip-modern-metadata-emlmzo69/scipion_em_xmipp.egg-info/requires.txt 2026-01-08T13:11:35,969 writing top-level names to /tmp/pip-modern-metadata-emlmzo69/scipion_em_xmipp.egg-info/top_level.txt 2026-01-08T13:11:35,971 writing manifest file '/tmp/pip-modern-metadata-emlmzo69/scipion_em_xmipp.egg-info/SOURCES.txt' 2026-01-08T13:11:36,008 reading manifest file '/tmp/pip-modern-metadata-emlmzo69/scipion_em_xmipp.egg-info/SOURCES.txt' 2026-01-08T13:11:36,011 reading manifest template 'MANIFEST.in' 2026-01-08T13:11:36,013 adding license file 'LICENSE' 2026-01-08T13:11:36,024 writing manifest file '/tmp/pip-modern-metadata-emlmzo69/scipion_em_xmipp.egg-info/SOURCES.txt' 2026-01-08T13:11:36,025 creating '/tmp/pip-modern-metadata-emlmzo69/scipion_em_xmipp-26.1.0.dist-info' 2026-01-08T13:11:36,154 Preparing metadata (pyproject.toml): finished with status 'done' 2026-01-08T13:11:36,159 Source in /tmp/pip-wheel-g2lvttw3/scipion-em-xmipp_d796dd7d7adb4e32ab08b3ef9098d8fa has version 26.1.0, which satisfies requirement scipion-em-xmipp==26.1.0 from https://files.pythonhosted.org/packages/1d/c0/922d6d59b584994412f93af6f2ec1fddd92e64735e77f0b73fc93d8d1704/scipion_em_xmipp-26.1.0.tar.gz 2026-01-08T13:11:36,160 Removed scipion-em-xmipp==26.1.0 from https://files.pythonhosted.org/packages/1d/c0/922d6d59b584994412f93af6f2ec1fddd92e64735e77f0b73fc93d8d1704/scipion_em_xmipp-26.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-ririni8q' 2026-01-08T13:11:36,165 Created temporary directory: /tmp/pip-unpack-8qbl6ms0 2026-01-08T13:11:36,166 Building wheels for collected packages: scipion-em-xmipp 2026-01-08T13:11:36,170 Created temporary directory: /tmp/pip-wheel-0rafnvr1 2026-01-08T13:11:36,171 Destination directory: /tmp/pip-wheel-0rafnvr1 2026-01-08T13:11:36,173 Building wheel for scipion-em-xmipp (pyproject.toml): started 2026-01-08T13:11:36,174 Running command Building wheel for scipion-em-xmipp (pyproject.toml) 2026-01-08T13:11:36,731 No `packages` or `py_modules` configuration, performing automatic discovery. 2026-01-08T13:11:36,732 `flat-layout` detected -- analysing . 2026-01-08T13:11:36,751 discovered packages -- ['xmipp3', 'xmipp3.convert', 'xmipp3.protocols', 'xmipp3.viewers', 'xmipp3.legacy', 'xmipp3.tests', 'xmipp3.protocols.protocol_preprocess', 'xmipp3.protocols.protocol_projmatch', 'xmipp3.legacy.protocols', 'xmipp3.legacy.viewers', 'xmipp3.legacy.tests'] 2026-01-08T13:11:36,756 /tmp/pip-build-env-e5ff_lfz/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-01-08T13:11:36,757 !! 2026-01-08T13:11:36,758 ******************************************************************************** 2026-01-08T13:11:36,759 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-01-08T13:11:36,760 By 2026-Feb-18, you need to update your project and remove deprecated calls 2026-01-08T13:11:36,761 or your builds will no longer be supported. 2026-01-08T13:11:36,762 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-01-08T13:11:36,763 ******************************************************************************** 2026-01-08T13:11:36,764 !! 2026-01-08T13:11:36,765 corresp(dist, value, root_dir) 2026-01-08T13:11:36,844 running bdist_wheel 2026-01-08T13:11:36,865 running build 2026-01-08T13:11:36,865 running build_py 2026-01-08T13:11:36,872 creating build/lib/xmipp3 2026-01-08T13:11:36,874 copying xmipp3/version.py -> build/lib/xmipp3 2026-01-08T13:11:36,876 copying xmipp3/wizards.py -> build/lib/xmipp3 2026-01-08T13:11:36,879 copying xmipp3/base.py -> build/lib/xmipp3 2026-01-08T13:11:36,882 copying xmipp3/__init__.py -> build/lib/xmipp3 2026-01-08T13:11:36,885 copying xmipp3/programs.py -> build/lib/xmipp3 2026-01-08T13:11:36,887 copying xmipp3/utils.py -> build/lib/xmipp3 2026-01-08T13:11:36,890 copying xmipp3/bibtex.py -> build/lib/xmipp3 2026-01-08T13:11:36,893 copying xmipp3/protocolsCollectInfo.py -> build/lib/xmipp3 2026-01-08T13:11:36,895 copying xmipp3/checkProtocolsConf.py -> build/lib/xmipp3 2026-01-08T13:11:36,898 copying xmipp3/constants.py -> build/lib/xmipp3 2026-01-08T13:11:36,900 copying xmipp3/logParser.py -> build/lib/xmipp3 2026-01-08T13:11:36,902 creating build/lib/xmipp3/convert 2026-01-08T13:11:36,903 copying xmipp3/convert/__init__.py -> build/lib/xmipp3/convert 2026-01-08T13:11:36,906 copying xmipp3/convert/convert.py -> build/lib/xmipp3/convert 2026-01-08T13:11:36,909 copying xmipp3/convert/dataimport.py -> build/lib/xmipp3/convert 2026-01-08T13:11:36,912 copying xmipp3/convert/io_coordinates.py -> build/lib/xmipp3/convert 2026-01-08T13:11:36,916 creating build/lib/xmipp3/protocols 2026-01-08T13:11:36,917 copying xmipp3/protocols/protocol_particle_pick_pairs.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:36,920 copying xmipp3/protocols/protocol_screen_deepConsensus.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:36,924 copying xmipp3/protocols/protocol_align_volume_and_particles.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:36,926 copying xmipp3/protocols/protocol_apply_transformation_matrix.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:36,929 copying xmipp3/protocols/protocol_center_particles.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:36,931 copying xmipp3/protocols/protocol_structure_map_zernike3d.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:36,934 copying xmipp3/protocols/protocol_reconstruct_significant.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:36,936 copying xmipp3/protocols/protocol_angular_graph_consistency.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:36,939 copying xmipp3/protocols/protocol_volume_adjust_sub.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:36,942 copying xmipp3/protocols/protocol_volume_consensus.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:36,944 copying xmipp3/protocols/protocol_volume_local_sharpening.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:36,947 copying xmipp3/protocols/protocol_mics_defocus_balancer.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:36,949 copying xmipp3/protocols/protocol_assignment_tilt_pair.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:36,952 copying xmipp3/protocols/protocol_random_conical_tilt.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:36,954 copying xmipp3/protocols/protocol_volume_strain.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:36,957 copying xmipp3/protocols/__init__.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:36,959 copying xmipp3/protocols/protocol_particle_pick.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:36,962 copying xmipp3/protocols/protocol_preprocess_micrographs.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:36,964 copying xmipp3/protocols/protocol_resolution_deepres.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:36,967 copying xmipp3/protocols/protocol_deep_center.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:36,969 copying xmipp3/protocols/protocol_shift_particles.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:36,972 copying xmipp3/protocols/protocol_resolution_directional.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:36,974 copying xmipp3/protocols/protocol_structure_map.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:36,977 copying xmipp3/protocols/protocol_break_symmetry.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:36,979 copying xmipp3/protocols/protocol_classify_pca_streaming.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:36,982 copying xmipp3/protocols/protocol_local_ctf.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:36,984 copying xmipp3/protocols/protocol_flexalign.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:36,987 copying xmipp3/protocols/protocol_particle_pick_remove_duplicates.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:36,989 copying xmipp3/protocols/protocol_pick_noise.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:36,992 copying xmipp3/protocols/protocol_classes_2d_mapping.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:36,995 copying xmipp3/protocols/protocol_reconstruct_swarm.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:36,997 copying xmipp3/protocols/protocol_cl2d.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,000 copying xmipp3/protocols/protocol_ml2d.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,003 copying xmipp3/protocols/protocol_validate_nontilt.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,005 copying xmipp3/protocols/protocol_compare_angles.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,008 copying xmipp3/protocols/protocol_classify_pca.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,010 copying xmipp3/protocols/protocol_multireference_alignability.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,013 copying xmipp3/protocols/protocol_apply_alignment.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,015 copying xmipp3/protocols/protocol_helical_parameters.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,018 copying xmipp3/protocols/protocol_validate_overfitting.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,020 copying xmipp3/protocols/protocol_resolution_fso.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,023 copying xmipp3/protocols/protocol_particle_pick_consensus.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,025 copying xmipp3/protocols/protocol_ctf_correct_phase.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,027 copying xmipp3/protocols/protocol_tilt_analysis.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,030 copying xmipp3/protocols/protocol_consensus_local_ctf.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,032 copying xmipp3/protocols/protocol_shift_volume.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,034 copying xmipp3/protocols/protocol_compare_reprojections.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,037 copying xmipp3/protocols/protocol_denoise_particles.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,039 copying xmipp3/protocols/protocol_apply_tilt_to_ctf.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,042 copying xmipp3/protocols/protocol_screen_particles.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,044 copying xmipp3/protocols/protocol_extract_particles.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,047 copying xmipp3/protocols/protocol_core_analysis.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,050 copying xmipp3/protocols/protocol_kerdensom.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,052 copying xmipp3/protocols/protocol_volume_deform_zernike3d.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,055 copying xmipp3/protocols/protocol_multiple_fscs.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,057 copying xmipp3/protocols/protocol_write_testC.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,059 copying xmipp3/protocols/protocol_movie_alignment_consensus.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,062 copying xmipp3/protocols/protocol_movie_max_shift.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,065 copying xmipp3/protocols/protocol_movie_split_frames.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,067 copying xmipp3/protocols/protocol_resolution3d.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,069 copying xmipp3/protocols/protocol_eliminate_empty_images.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,072 copying xmipp3/protocols/protocol_analyze_local_ctf.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,075 copying xmipp3/protocols/protocol_apply_zernike3d.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,077 copying xmipp3/protocols/protocol_extract_asymmetric_unit.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,079 copying xmipp3/protocols/protocol_volume_local_adjust.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,082 copying xmipp3/protocols/protocol_cl2d_clustering.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,085 copying xmipp3/protocols/protocol_movie_gain.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,088 copying xmipp3/protocols/protocol_convert_pdb.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,091 copying xmipp3/protocols/protocol_resolution_monogenic_signal.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,094 copying xmipp3/protocols/protocol_phantom_create.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,097 copying xmipp3/protocols/protocol_deep_micrograph_screen.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,100 copying xmipp3/protocols/protocol_deep_center_predict.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,102 copying xmipp3/protocols/protocol_resolution_bfactor.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,105 copying xmipp3/protocols/protocol_trigger_data.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,108 copying xmipp3/protocols/protocol_create_gallery.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,111 copying xmipp3/protocols/protocol_deep_hand.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,113 copying xmipp3/protocols/protocol_movie_dose_analysis.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,116 copying xmipp3/protocols/protocol_particle_pick_automatic.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,119 copying xmipp3/protocols/protocol_extract_particles_pairs.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,122 copying xmipp3/protocols/protocol_subtract_projection.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,125 copying xmipp3/protocols/protocol_ctf_correct_wiener2d.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,127 copying xmipp3/protocols/protocol_ctf_defocus_group.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,130 copying xmipp3/protocols/protocol_consensus_classes.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,133 copying xmipp3/protocols/protocol_cl2d_align.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,135 copying xmipp3/protocols/protocol_postProcessing_deepPostProcessing.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,138 copying xmipp3/protocols/protocol_write_testP.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,141 copying xmipp3/protocols/protocol_ransac.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,144 copying xmipp3/protocols/protocol_generate_reprojections.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,146 copying xmipp3/protocols/protocol_ctf_micrographs.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,150 copying xmipp3/protocols/protocol_rotate_volume.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,152 copying xmipp3/protocols/protocol_compute_likelihood.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,155 copying xmipp3/protocols/protocol_reconstruct_highres.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,159 copying xmipp3/protocols/protocol_reconstruct_fourier.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,162 copying xmipp3/protocols/protocol_rotational_symmetry.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,165 copying xmipp3/protocols/protocol_ctf_consensus.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,168 copying xmipp3/protocols/protocol_normalize_strain.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,170 copying xmipp3/protocols/protocol_simulate_ctf.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,172 copying xmipp3/protocols/protocol_align_volume.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,175 copying xmipp3/protocols/protocol_validate_fscq.py -> build/lib/xmipp3/protocols 2026-01-08T13:11:37,179 creating build/lib/xmipp3/viewers 2026-01-08T13:11:37,181 copying xmipp3/viewers/viewer_normalize_strain.py -> build/lib/xmipp3/viewers 2026-01-08T13:11:37,183 copying xmipp3/viewers/viewer_resolution3d.py -> build/lib/xmipp3/viewers 2026-01-08T13:11:37,186 copying xmipp3/viewers/viewer_volume_subtraction.py -> build/lib/xmipp3/viewers 2026-01-08T13:11:37,188 copying xmipp3/viewers/viewer_validate_fscq.py -> build/lib/xmipp3/viewers 2026-01-08T13:11:37,191 copying xmipp3/viewers/viewer_ml2d.py -> build/lib/xmipp3/viewers 2026-01-08T13:11:37,194 copying xmipp3/viewers/viewer_subtract_projection.py -> build/lib/xmipp3/viewers 2026-01-08T13:11:37,196 copying xmipp3/viewers/viewer_volume_strain.py -> build/lib/xmipp3/viewers 2026-01-08T13:11:37,198 copying xmipp3/viewers/viewer_dose_analysis.py -> build/lib/xmipp3/viewers 2026-01-08T13:11:37,201 copying xmipp3/viewers/__init__.py -> build/lib/xmipp3/viewers 2026-01-08T13:11:37,203 copying xmipp3/viewers/viewer_apply_tilt_to_ctf.py -> build/lib/xmipp3/viewers 2026-01-08T13:11:37,206 copying xmipp3/viewers/viewer_ransac.py -> build/lib/xmipp3/viewers 2026-01-08T13:11:37,208 copying xmipp3/viewers/viewer_deepEMHancer.py -> build/lib/xmipp3/viewers 2026-01-08T13:11:37,210 copying xmipp3/viewers/viewer_projmatch.py -> build/lib/xmipp3/viewers 2026-01-08T13:11:37,214 copying xmipp3/viewers/viewer_resolution_fso.py -> build/lib/xmipp3/viewers 2026-01-08T13:11:37,216 copying xmipp3/viewers/viewer_validate_nontilt.py -> build/lib/xmipp3/viewers 2026-01-08T13:11:37,219 copying xmipp3/viewers/viewer_validate_overfitting.py -> build/lib/xmipp3/viewers 2026-01-08T13:11:37,221 copying xmipp3/viewers/viewer_swarm.py -> build/lib/xmipp3/viewers 2026-01-08T13:11:37,223 copying xmipp3/viewers/viewer_pdb_deform_zernike3d.py -> build/lib/xmipp3/viewers 2026-01-08T13:11:37,226 copying xmipp3/viewers/viewer_extract_asymmetric_unit.py -> build/lib/xmipp3/viewers 2026-01-08T13:11:37,229 copying xmipp3/viewers/viewer_resolution_monogenic_signal.py -> build/lib/xmipp3/viewers 2026-01-08T13:11:37,231 copying xmipp3/viewers/viewer_reconstruct_highres.py -> build/lib/xmipp3/viewers 2026-01-08T13:11:37,234 copying xmipp3/viewers/viewer_structure_map.py -> build/lib/xmipp3/viewers 2026-01-08T13:11:37,237 copying xmipp3/viewers/viewer_resolution_deepres.py -> build/lib/xmipp3/viewers 2026-01-08T13:11:37,239 copying xmipp3/viewers/viewer_eliminate_empty_images.py -> build/lib/xmipp3/viewers 2026-01-08T13:11:37,242 copying xmipp3/viewers/viewer_cl2d_clustering.py -> build/lib/xmipp3/viewers 2026-01-08T13:11:37,244 copying xmipp3/viewers/viewer_LL_matrix.py -> build/lib/xmipp3/viewers 2026-01-08T13:11:37,247 copying xmipp3/viewers/plotter.py -> build/lib/xmipp3/viewers 2026-01-08T13:11:37,249 copying xmipp3/viewers/viewer_analyze_local_ctf.py -> build/lib/xmipp3/viewers 2026-01-08T13:11:37,252 copying xmipp3/viewers/viewer_ctf_consensus.py -> build/lib/xmipp3/viewers 2026-01-08T13:11:37,254 copying xmipp3/viewers/viewer_volume_deform_zernike3d.py -> build/lib/xmipp3/viewers 2026-01-08T13:11:37,257 copying xmipp3/viewers/viewer_resolution_directional.py -> build/lib/xmipp3/viewers 2026-01-08T13:11:37,260 copying xmipp3/viewers/viewer_movie_alignment.py -> build/lib/xmipp3/viewers 2026-01-08T13:11:37,263 copying xmipp3/viewers/viewer_deep_consensus.py -> build/lib/xmipp3/viewers 2026-01-08T13:11:37,265 copying xmipp3/viewers/viewer_volume_consensus.py -> build/lib/xmipp3/viewers 2026-01-08T13:11:37,268 copying xmipp3/viewers/viewer_local_sharpening.py -> build/lib/xmipp3/viewers 2026-01-08T13:11:37,270 copying xmipp3/viewers/viewer.py -> build/lib/xmipp3/viewers 2026-01-08T13:11:37,273 copying xmipp3/viewers/viewer_deep_micrograph_cleaner.py -> build/lib/xmipp3/viewers 2026-01-08T13:11:37,276 copying xmipp3/viewers/viewer_consensus_classes.py -> build/lib/xmipp3/viewers 2026-01-08T13:11:37,279 copying xmipp3/viewers/viewer_resolution_bfactor.py -> build/lib/xmipp3/viewers 2026-01-08T13:11:37,282 copying xmipp3/viewers/viewer_cl2d.py -> build/lib/xmipp3/viewers 2026-01-08T13:11:37,285 creating build/lib/xmipp3/legacy 2026-01-08T13:11:37,286 copying xmipp3/legacy/__init__.py -> build/lib/xmipp3/legacy 2026-01-08T13:11:37,289 creating build/lib/xmipp3/tests 2026-01-08T13:11:37,291 copying xmipp3/tests/test_protocol_angular_graph_consistency.py -> build/lib/xmipp3/tests 2026-01-08T13:11:37,293 copying xmipp3/tests/test_protocol_ctf_consensus.py -> build/lib/xmipp3/tests 2026-01-08T13:11:37,296 copying xmipp3/tests/test_protocol_consensus_classes3D.py -> build/lib/xmipp3/tests 2026-01-08T13:11:37,299 copying xmipp3/tests/test_protocol_split_frames.py -> build/lib/xmipp3/tests 2026-01-08T13:11:37,301 copying xmipp3/tests/test_protocol_compare_angles.py -> build/lib/xmipp3/tests 2026-01-08T13:11:37,304 copying xmipp3/tests/test_protocols_zernike3d.py -> build/lib/xmipp3/tests 2026-01-08T13:11:37,307 copying xmipp3/tests/__init__.py -> build/lib/xmipp3/tests 2026-01-08T13:11:37,309 copying xmipp3/tests/test_protocols_xmipp_movies.py -> build/lib/xmipp3/tests 2026-01-08T13:11:37,312 copying xmipp3/tests/test_protocol_monodir.py -> build/lib/xmipp3/tests 2026-01-08T13:11:37,315 copying xmipp3/tests/test_protocols_continuousflex.py -> build/lib/xmipp3/tests 2026-01-08T13:11:37,317 copying xmipp3/tests/test_protocols_add_noise.py -> build/lib/xmipp3/tests 2026-01-08T13:11:37,320 copying xmipp3/tests/test_protocols_realignment_classes.py -> build/lib/xmipp3/tests 2026-01-08T13:11:37,323 copying xmipp3/tests/test_protocols_highres.py -> build/lib/xmipp3/tests 2026-01-08T13:11:37,325 copying xmipp3/tests/test_protocol_multireference_alignability.py -> build/lib/xmipp3/tests 2026-01-08T13:11:37,328 copying xmipp3/tests/test_protocols_monores.py -> build/lib/xmipp3/tests 2026-01-08T13:11:37,330 copying xmipp3/tests/test_protocols_xmipp_2d.py -> build/lib/xmipp3/tests 2026-01-08T13:11:37,334 copying xmipp3/tests/test_protocol_apply_transformation_matrix.py -> build/lib/xmipp3/tests 2026-01-08T13:11:37,336 copying xmipp3/tests/test_protocols_deepVolPostprocessing.py -> build/lib/xmipp3/tests 2026-01-08T13:11:37,339 copying xmipp3/tests/test_protocols_localdeblur.py -> build/lib/xmipp3/tests 2026-01-08T13:11:37,341 copying xmipp3/tests/test_protocol_screen_deepConsensus.py -> build/lib/xmipp3/tests 2026-01-08T13:11:37,344 copying xmipp3/tests/test_protocols_xmipp_mics.py -> build/lib/xmipp3/tests 2026-01-08T13:11:37,347 copying xmipp3/tests/test_protocol_validate_overfitting.py -> build/lib/xmipp3/tests 2026-01-08T13:11:37,349 copying xmipp3/tests/test_protocols_deepcenter_predict.py -> build/lib/xmipp3/tests 2026-01-08T13:11:37,351 copying xmipp3/tests/test_protocol_extract_asymmetric_unit.py -> build/lib/xmipp3/tests 2026-01-08T13:11:37,354 copying xmipp3/tests/test_protocol_reconstruct_fourier.py -> build/lib/xmipp3/tests 2026-01-08T13:11:37,356 copying xmipp3/tests/test_protocol_likelihood.py -> build/lib/xmipp3/tests 2026-01-08T13:11:37,359 copying xmipp3/tests/test_protocol_simulate_ctf.py -> build/lib/xmipp3/tests 2026-01-08T13:11:37,361 copying xmipp3/tests/test_convert_xmipp.py -> build/lib/xmipp3/tests 2026-01-08T13:11:37,364 copying xmipp3/tests/test_protocols_xmipp_movie_resize.py -> build/lib/xmipp3/tests 2026-01-08T13:11:37,367 copying xmipp3/tests/test_protocols_fso.py -> build/lib/xmipp3/tests 2026-01-08T13:11:37,370 copying xmipp3/tests/test_protocols_local_defocus.py -> build/lib/xmipp3/tests 2026-01-08T13:11:37,372 copying xmipp3/tests/test_protocol_validate_fscq.py -> build/lib/xmipp3/tests 2026-01-08T13:11:37,374 copying xmipp3/tests/test_protocol_multiple_fsc.py -> build/lib/xmipp3/tests 2026-01-08T13:11:37,376 copying xmipp3/tests/test_protocols_deepres.py -> build/lib/xmipp3/tests 2026-01-08T13:11:37,378 copying xmipp3/tests/test_protocols_xmipp_3d.py -> build/lib/xmipp3/tests 2026-01-08T13:11:37,384 creating build/lib/xmipp3/protocols/protocol_preprocess 2026-01-08T13:11:37,385 copying xmipp3/protocols/protocol_preprocess/__init__.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-01-08T13:11:37,387 copying xmipp3/protocols/protocol_preprocess/protocol_crop_resize.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-01-08T13:11:37,391 copying xmipp3/protocols/protocol_preprocess/protocol_create_mask2d.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-01-08T13:11:37,393 copying xmipp3/protocols/protocol_preprocess/protocol_image_operate.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-01-08T13:11:37,396 copying xmipp3/protocols/protocol_preprocess/protocol_mask.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-01-08T13:11:37,399 copying xmipp3/protocols/protocol_preprocess/protocol_create_mask3d.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-01-08T13:11:37,401 copying xmipp3/protocols/protocol_preprocess/protocol_preprocess.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-01-08T13:11:37,404 copying xmipp3/protocols/protocol_preprocess/protocol_movie_resize.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-01-08T13:11:37,407 copying xmipp3/protocols/protocol_preprocess/protocol_add_noise.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-01-08T13:11:37,409 copying xmipp3/protocols/protocol_preprocess/geometrical_mask.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-01-08T13:11:37,412 copying xmipp3/protocols/protocol_preprocess/protocol_filter.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-01-08T13:11:37,415 copying xmipp3/protocols/protocol_preprocess/protocol_process.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-01-08T13:11:37,418 creating build/lib/xmipp3/protocols/protocol_projmatch 2026-01-08T13:11:37,419 copying xmipp3/protocols/protocol_projmatch/__init__.py -> build/lib/xmipp3/protocols/protocol_projmatch 2026-01-08T13:11:37,421 copying xmipp3/protocols/protocol_projmatch/projmatch_initialize.py -> build/lib/xmipp3/protocols/protocol_projmatch 2026-01-08T13:11:37,423 copying xmipp3/protocols/protocol_projmatch/protocol_projmatch.py -> build/lib/xmipp3/protocols/protocol_projmatch 2026-01-08T13:11:37,426 copying xmipp3/protocols/protocol_projmatch/projmatch_form.py -> build/lib/xmipp3/protocols/protocol_projmatch 2026-01-08T13:11:37,428 copying xmipp3/protocols/protocol_projmatch/projmatch_steps.py -> build/lib/xmipp3/protocols/protocol_projmatch 2026-01-08T13:11:37,432 creating build/lib/xmipp3/legacy/protocols 2026-01-08T13:11:37,433 copying xmipp3/legacy/protocols/protocol_metaprotocol_discrete_heterogeneity_scheduler.py -> build/lib/xmipp3/legacy/protocols 2026-01-08T13:11:37,436 copying xmipp3/legacy/protocols/protocol_split_volume_hierarchical_cluster.py -> build/lib/xmipp3/legacy/protocols 2026-01-08T13:11:37,439 copying xmipp3/legacy/protocols/protocol_metaprotocol_create_subset.py -> build/lib/xmipp3/legacy/protocols 2026-01-08T13:11:37,441 copying xmipp3/legacy/protocols/protocol_metaprotocol_create_output.py -> build/lib/xmipp3/legacy/protocols 2026-01-08T13:11:37,443 copying xmipp3/legacy/protocols/protocol_rotational_spectra.py -> build/lib/xmipp3/legacy/protocols 2026-01-08T13:11:37,446 copying xmipp3/legacy/protocols/protocol_classify_kmeans2d.py -> build/lib/xmipp3/legacy/protocols 2026-01-08T13:11:37,449 copying xmipp3/legacy/protocols/protocol_solid_angles.py -> build/lib/xmipp3/legacy/protocols 2026-01-08T13:11:37,451 copying xmipp3/legacy/protocols/protocol_kmeans_clustering.py -> build/lib/xmipp3/legacy/protocols 2026-01-08T13:11:37,454 copying xmipp3/legacy/protocols/protocol_metaprotocol_golden_highres.py -> build/lib/xmipp3/legacy/protocols 2026-01-08T13:11:37,457 copying xmipp3/legacy/protocols/protocol_movie_opticalflow.py -> build/lib/xmipp3/legacy/protocols 2026-01-08T13:11:37,459 copying xmipp3/legacy/protocols/__init__.py -> build/lib/xmipp3/legacy/protocols 2026-01-08T13:11:37,461 copying xmipp3/legacy/protocols/protocol_particle_boxsize.py -> build/lib/xmipp3/legacy/protocols 2026-01-08T13:11:37,463 copying xmipp3/legacy/protocols/protocol_extract_particles_movies.py -> build/lib/xmipp3/legacy/protocols 2026-01-08T13:11:37,466 copying xmipp3/legacy/protocols/protocol_apply_deformation_zernike3d.py -> build/lib/xmipp3/legacy/protocols 2026-01-08T13:11:37,468 copying xmipp3/legacy/protocols/protocol_classification_gpuCorr_semi.py -> build/lib/xmipp3/legacy/protocols 2026-01-08T13:11:37,471 copying xmipp3/legacy/protocols/protocol_deep_denoising.py -> build/lib/xmipp3/legacy/protocols 2026-01-08T13:11:37,473 copying xmipp3/legacy/protocols/protocol_movie_average.py -> build/lib/xmipp3/legacy/protocols 2026-01-08T13:11:37,476 copying xmipp3/legacy/protocols/protocol_deep_align.py -> build/lib/xmipp3/legacy/protocols 2026-01-08T13:11:37,479 copying xmipp3/legacy/protocols/protocol_classification_gpuCorr.py -> build/lib/xmipp3/legacy/protocols 2026-01-08T13:11:37,482 copying xmipp3/legacy/protocols/protocol_classification_gpuCorr_full.py -> build/lib/xmipp3/legacy/protocols 2026-01-08T13:11:37,485 copying xmipp3/legacy/protocols/protocol_screen_deeplearning.py -> build/lib/xmipp3/legacy/protocols 2026-01-08T13:11:37,487 copying xmipp3/legacy/protocols/protocol_reconstruct_heterogeneous.py -> build/lib/xmipp3/legacy/protocols 2026-01-08T13:11:37,491 copying xmipp3/legacy/protocols/protocol_angular_resolution_alignment.py -> build/lib/xmipp3/legacy/protocols 2026-01-08T13:11:37,493 copying xmipp3/legacy/protocols/protocol_enrich.py -> build/lib/xmipp3/legacy/protocols 2026-01-08T13:11:37,496 copying xmipp3/legacy/protocols/protocol_split_volume.py -> build/lib/xmipp3/legacy/protocols 2026-01-08T13:11:37,498 copying xmipp3/legacy/protocols/protocol_subtract_projection.py -> build/lib/xmipp3/legacy/protocols 2026-01-08T13:11:37,500 copying xmipp3/legacy/protocols/protocol_mltomo.py -> build/lib/xmipp3/legacy/protocols 2026-01-08T13:11:37,503 creating build/lib/xmipp3/legacy/viewers 2026-01-08T13:11:37,504 copying xmipp3/legacy/viewers/viewer_mltomo.py -> build/lib/xmipp3/legacy/viewers 2026-01-08T13:11:37,507 copying xmipp3/legacy/viewers/viewer_metaprotocol_golden_highres.py -> build/lib/xmipp3/legacy/viewers 2026-01-08T13:11:37,509 copying xmipp3/legacy/viewers/viewer_deep_align.py -> build/lib/xmipp3/legacy/viewers 2026-01-08T13:11:37,511 copying xmipp3/legacy/viewers/viewer_angular_resolution_alignment.py -> build/lib/xmipp3/legacy/viewers 2026-01-08T13:11:37,514 copying xmipp3/legacy/viewers/viewer_solid_angles.py -> build/lib/xmipp3/legacy/viewers 2026-01-08T13:11:37,516 copying xmipp3/legacy/viewers/viewer_split_volume.py -> build/lib/xmipp3/legacy/viewers 2026-01-08T13:11:37,518 creating build/lib/xmipp3/legacy/tests 2026-01-08T13:11:37,519 copying xmipp3/legacy/tests/test_protocols_gpuCorr_semiStreaming.py -> build/lib/xmipp3/legacy/tests 2026-01-08T13:11:37,521 copying xmipp3/legacy/tests/test_protocols_gpuCorr_classifier.py -> build/lib/xmipp3/legacy/tests 2026-01-08T13:11:37,524 copying xmipp3/legacy/tests/test_protocols_xmipp_movies.py -> build/lib/xmipp3/legacy/tests 2026-01-08T13:11:37,526 copying xmipp3/legacy/tests/test_protocols_subtract_projection.py -> build/lib/xmipp3/legacy/tests 2026-01-08T13:11:37,529 copying xmipp3/legacy/tests/test_protocol_deep_denoising.py -> build/lib/xmipp3/legacy/tests 2026-01-08T13:11:37,531 copying xmipp3/legacy/tests/test_protocols_metaprotocol_golden_highres.py -> build/lib/xmipp3/legacy/tests 2026-01-08T13:11:37,533 copying xmipp3/legacy/tests/test_protocols_metaprotocol_heterogeneity.py -> build/lib/xmipp3/legacy/tests 2026-01-08T13:11:37,535 copying xmipp3/legacy/tests/test_protocols_angular_resolution_alignment.py -> build/lib/xmipp3/legacy/tests 2026-01-08T13:11:37,537 copying xmipp3/legacy/tests/test_protocols_solid_angles.py -> build/lib/xmipp3/legacy/tests 2026-01-08T13:11:37,539 copying xmipp3/legacy/tests/test_protocols_mixed_movies.py -> build/lib/xmipp3/legacy/tests 2026-01-08T13:11:37,541 copying xmipp3/legacy/tests/test_protocols_gpuCorr_fullStreaming.py -> build/lib/xmipp3/legacy/tests 2026-01-08T13:11:37,543 running egg_info 2026-01-08T13:11:37,555 writing scipion_em_xmipp.egg-info/PKG-INFO 2026-01-08T13:11:37,557 writing dependency_links to scipion_em_xmipp.egg-info/dependency_links.txt 2026-01-08T13:11:37,559 writing entry points to scipion_em_xmipp.egg-info/entry_points.txt 2026-01-08T13:11:37,560 writing requirements to scipion_em_xmipp.egg-info/requires.txt 2026-01-08T13:11:37,561 writing top-level names to scipion_em_xmipp.egg-info/top_level.txt 2026-01-08T13:11:37,589 reading manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt' 2026-01-08T13:11:37,603 reading manifest template 'MANIFEST.in' 2026-01-08T13:11:37,606 adding license file 'LICENSE' 2026-01-08T13:11:37,619 writing manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt' 2026-01-08T13:11:37,629 copying xmipp3/protocols.conf -> build/lib/xmipp3 2026-01-08T13:11:37,632 copying xmipp3/xmipp_logo.png -> build/lib/xmipp3 2026-01-08T13:11:37,636 copying xmipp3/xmipp_logo_devel.png -> build/lib/xmipp3 2026-01-08T13:11:37,675 installing to build/bdist.linux-armv7l/wheel 2026-01-08T13:11:37,676 running install 2026-01-08T13:11:37,699 running install_lib 2026-01-08T13:11:37,706 creating build/bdist.linux-armv7l/wheel 2026-01-08T13:11:37,708 creating build/bdist.linux-armv7l/wheel/xmipp3 2026-01-08T13:11:37,709 copying build/lib/xmipp3/version.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-01-08T13:11:37,711 copying build/lib/xmipp3/wizards.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-01-08T13:11:37,714 creating build/bdist.linux-armv7l/wheel/xmipp3/convert 2026-01-08T13:11:37,715 copying build/lib/xmipp3/convert/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/convert 2026-01-08T13:11:37,716 copying build/lib/xmipp3/convert/convert.py -> build/bdist.linux-armv7l/wheel/./xmipp3/convert 2026-01-08T13:11:37,720 copying build/lib/xmipp3/convert/dataimport.py -> build/bdist.linux-armv7l/wheel/./xmipp3/convert 2026-01-08T13:11:37,722 copying build/lib/xmipp3/convert/io_coordinates.py -> build/bdist.linux-armv7l/wheel/./xmipp3/convert 2026-01-08T13:11:37,724 copying build/lib/xmipp3/xmipp_logo_devel.png -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-01-08T13:11:37,737 copying build/lib/xmipp3/base.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-01-08T13:11:37,739 copying build/lib/xmipp3/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-01-08T13:11:37,742 copying build/lib/xmipp3/protocols.conf -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-01-08T13:11:37,746 creating build/bdist.linux-armv7l/wheel/xmipp3/protocols 2026-01-08T13:11:37,747 copying build/lib/xmipp3/protocols/protocol_particle_pick_pairs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,750 copying build/lib/xmipp3/protocols/protocol_screen_deepConsensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,753 copying build/lib/xmipp3/protocols/protocol_align_volume_and_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,756 copying build/lib/xmipp3/protocols/protocol_apply_transformation_matrix.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,758 copying build/lib/xmipp3/protocols/protocol_center_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,760 copying build/lib/xmipp3/protocols/protocol_structure_map_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,763 copying build/lib/xmipp3/protocols/protocol_reconstruct_significant.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,766 copying build/lib/xmipp3/protocols/protocol_angular_graph_consistency.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,769 copying build/lib/xmipp3/protocols/protocol_volume_adjust_sub.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,771 copying build/lib/xmipp3/protocols/protocol_volume_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,773 copying build/lib/xmipp3/protocols/protocol_volume_local_sharpening.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,776 copying build/lib/xmipp3/protocols/protocol_mics_defocus_balancer.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,778 copying build/lib/xmipp3/protocols/protocol_assignment_tilt_pair.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,781 copying build/lib/xmipp3/protocols/protocol_random_conical_tilt.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,783 copying build/lib/xmipp3/protocols/protocol_volume_strain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,785 copying build/lib/xmipp3/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,787 copying build/lib/xmipp3/protocols/protocol_particle_pick.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,790 copying build/lib/xmipp3/protocols/protocol_preprocess_micrographs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,792 copying build/lib/xmipp3/protocols/protocol_resolution_deepres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,795 copying build/lib/xmipp3/protocols/protocol_deep_center.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,797 copying build/lib/xmipp3/protocols/protocol_shift_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,800 copying build/lib/xmipp3/protocols/protocol_resolution_directional.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,802 copying build/lib/xmipp3/protocols/protocol_structure_map.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,804 copying build/lib/xmipp3/protocols/protocol_break_symmetry.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,806 copying build/lib/xmipp3/protocols/protocol_classify_pca_streaming.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,809 copying build/lib/xmipp3/protocols/protocol_local_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,812 copying build/lib/xmipp3/protocols/protocol_flexalign.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,814 copying build/lib/xmipp3/protocols/protocol_particle_pick_remove_duplicates.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,816 copying build/lib/xmipp3/protocols/protocol_pick_noise.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,819 copying build/lib/xmipp3/protocols/protocol_classes_2d_mapping.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,821 copying build/lib/xmipp3/protocols/protocol_reconstruct_swarm.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,824 copying build/lib/xmipp3/protocols/protocol_cl2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,828 copying build/lib/xmipp3/protocols/protocol_ml2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,830 copying build/lib/xmipp3/protocols/protocol_validate_nontilt.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,833 copying build/lib/xmipp3/protocols/protocol_compare_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,835 copying build/lib/xmipp3/protocols/protocol_classify_pca.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,838 copying build/lib/xmipp3/protocols/protocol_multireference_alignability.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,841 copying build/lib/xmipp3/protocols/protocol_apply_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,843 copying build/lib/xmipp3/protocols/protocol_helical_parameters.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,845 copying build/lib/xmipp3/protocols/protocol_validate_overfitting.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,848 copying build/lib/xmipp3/protocols/protocol_resolution_fso.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,851 copying build/lib/xmipp3/protocols/protocol_particle_pick_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,854 copying build/lib/xmipp3/protocols/protocol_ctf_correct_phase.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,856 copying build/lib/xmipp3/protocols/protocol_tilt_analysis.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,858 copying build/lib/xmipp3/protocols/protocol_consensus_local_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,861 copying build/lib/xmipp3/protocols/protocol_shift_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,863 copying build/lib/xmipp3/protocols/protocol_compare_reprojections.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,866 copying build/lib/xmipp3/protocols/protocol_denoise_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,868 copying build/lib/xmipp3/protocols/protocol_apply_tilt_to_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,871 copying build/lib/xmipp3/protocols/protocol_screen_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,873 copying build/lib/xmipp3/protocols/protocol_extract_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,876 creating build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_preprocess 2026-01-08T13:11:37,877 copying build/lib/xmipp3/protocols/protocol_preprocess/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-01-08T13:11:37,879 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_crop_resize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-01-08T13:11:37,882 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_create_mask2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-01-08T13:11:37,884 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_image_operate.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-01-08T13:11:37,887 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_mask.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-01-08T13:11:37,889 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_create_mask3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-01-08T13:11:37,891 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_preprocess.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-01-08T13:11:37,894 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_movie_resize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-01-08T13:11:37,896 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_add_noise.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-01-08T13:11:37,899 copying build/lib/xmipp3/protocols/protocol_preprocess/geometrical_mask.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-01-08T13:11:37,901 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_filter.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-01-08T13:11:37,904 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_process.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-01-08T13:11:37,906 copying build/lib/xmipp3/protocols/protocol_core_analysis.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,909 copying build/lib/xmipp3/protocols/protocol_kerdensom.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,911 copying build/lib/xmipp3/protocols/protocol_volume_deform_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,913 copying build/lib/xmipp3/protocols/protocol_multiple_fscs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,915 copying build/lib/xmipp3/protocols/protocol_write_testC.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,917 copying build/lib/xmipp3/protocols/protocol_movie_alignment_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,921 copying build/lib/xmipp3/protocols/protocol_movie_max_shift.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,924 copying build/lib/xmipp3/protocols/protocol_movie_split_frames.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,926 copying build/lib/xmipp3/protocols/protocol_resolution3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,928 copying build/lib/xmipp3/protocols/protocol_eliminate_empty_images.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,931 copying build/lib/xmipp3/protocols/protocol_analyze_local_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,933 copying build/lib/xmipp3/protocols/protocol_apply_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,935 copying build/lib/xmipp3/protocols/protocol_extract_asymmetric_unit.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,938 copying build/lib/xmipp3/protocols/protocol_volume_local_adjust.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,940 copying build/lib/xmipp3/protocols/protocol_cl2d_clustering.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,943 copying build/lib/xmipp3/protocols/protocol_movie_gain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,945 copying build/lib/xmipp3/protocols/protocol_convert_pdb.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,948 copying build/lib/xmipp3/protocols/protocol_resolution_monogenic_signal.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,950 copying build/lib/xmipp3/protocols/protocol_phantom_create.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,952 copying build/lib/xmipp3/protocols/protocol_deep_micrograph_screen.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,955 copying build/lib/xmipp3/protocols/protocol_deep_center_predict.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,957 copying build/lib/xmipp3/protocols/protocol_resolution_bfactor.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,960 copying build/lib/xmipp3/protocols/protocol_trigger_data.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,962 copying build/lib/xmipp3/protocols/protocol_create_gallery.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,964 copying build/lib/xmipp3/protocols/protocol_deep_hand.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,967 copying build/lib/xmipp3/protocols/protocol_movie_dose_analysis.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,970 copying build/lib/xmipp3/protocols/protocol_particle_pick_automatic.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,972 copying build/lib/xmipp3/protocols/protocol_extract_particles_pairs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,974 copying build/lib/xmipp3/protocols/protocol_subtract_projection.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,977 copying build/lib/xmipp3/protocols/protocol_ctf_correct_wiener2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,979 copying build/lib/xmipp3/protocols/protocol_ctf_defocus_group.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,982 copying build/lib/xmipp3/protocols/protocol_consensus_classes.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,984 copying build/lib/xmipp3/protocols/protocol_cl2d_align.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,986 copying build/lib/xmipp3/protocols/protocol_postProcessing_deepPostProcessing.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,989 copying build/lib/xmipp3/protocols/protocol_write_testP.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,991 copying build/lib/xmipp3/protocols/protocol_ransac.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,994 copying build/lib/xmipp3/protocols/protocol_generate_reprojections.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,996 copying build/lib/xmipp3/protocols/protocol_ctf_micrographs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:37,999 copying build/lib/xmipp3/protocols/protocol_rotate_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:38,001 copying build/lib/xmipp3/protocols/protocol_compute_likelihood.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:38,004 copying build/lib/xmipp3/protocols/protocol_reconstruct_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:38,007 copying build/lib/xmipp3/protocols/protocol_reconstruct_fourier.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:38,010 creating build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_projmatch 2026-01-08T13:11:38,011 copying build/lib/xmipp3/protocols/protocol_projmatch/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch 2026-01-08T13:11:38,013 copying build/lib/xmipp3/protocols/protocol_projmatch/projmatch_initialize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch 2026-01-08T13:11:38,015 copying build/lib/xmipp3/protocols/protocol_projmatch/protocol_projmatch.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch 2026-01-08T13:11:38,018 copying build/lib/xmipp3/protocols/protocol_projmatch/projmatch_form.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch 2026-01-08T13:11:38,021 copying build/lib/xmipp3/protocols/protocol_projmatch/projmatch_steps.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch 2026-01-08T13:11:38,024 copying build/lib/xmipp3/protocols/protocol_rotational_symmetry.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:38,026 copying build/lib/xmipp3/protocols/protocol_ctf_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:38,028 copying build/lib/xmipp3/protocols/protocol_normalize_strain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:38,030 copying build/lib/xmipp3/protocols/protocol_simulate_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:38,033 copying build/lib/xmipp3/protocols/protocol_align_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:38,035 copying build/lib/xmipp3/protocols/protocol_validate_fscq.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-01-08T13:11:38,038 copying build/lib/xmipp3/programs.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-01-08T13:11:38,041 copying build/lib/xmipp3/utils.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-01-08T13:11:38,043 copying build/lib/xmipp3/bibtex.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-01-08T13:11:38,046 copying build/lib/xmipp3/protocolsCollectInfo.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-01-08T13:11:38,049 creating build/bdist.linux-armv7l/wheel/xmipp3/viewers 2026-01-08T13:11:38,050 copying build/lib/xmipp3/viewers/viewer_normalize_strain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-01-08T13:11:38,052 copying build/lib/xmipp3/viewers/viewer_resolution3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-01-08T13:11:38,054 copying build/lib/xmipp3/viewers/viewer_volume_subtraction.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-01-08T13:11:38,056 copying build/lib/xmipp3/viewers/viewer_validate_fscq.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-01-08T13:11:38,059 copying build/lib/xmipp3/viewers/viewer_ml2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-01-08T13:11:38,061 copying build/lib/xmipp3/viewers/viewer_subtract_projection.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-01-08T13:11:38,063 copying build/lib/xmipp3/viewers/viewer_volume_strain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-01-08T13:11:38,065 copying build/lib/xmipp3/viewers/viewer_dose_analysis.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-01-08T13:11:38,067 copying build/lib/xmipp3/viewers/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-01-08T13:11:38,069 copying build/lib/xmipp3/viewers/viewer_apply_tilt_to_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-01-08T13:11:38,071 copying build/lib/xmipp3/viewers/viewer_ransac.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-01-08T13:11:38,073 copying build/lib/xmipp3/viewers/viewer_deepEMHancer.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-01-08T13:11:38,075 copying build/lib/xmipp3/viewers/viewer_projmatch.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-01-08T13:11:38,078 copying build/lib/xmipp3/viewers/viewer_resolution_fso.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-01-08T13:11:38,080 copying build/lib/xmipp3/viewers/viewer_validate_nontilt.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-01-08T13:11:38,082 copying build/lib/xmipp3/viewers/viewer_validate_overfitting.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-01-08T13:11:38,084 copying build/lib/xmipp3/viewers/viewer_swarm.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-01-08T13:11:38,086 copying build/lib/xmipp3/viewers/viewer_pdb_deform_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-01-08T13:11:38,088 copying build/lib/xmipp3/viewers/viewer_extract_asymmetric_unit.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-01-08T13:11:38,090 copying build/lib/xmipp3/viewers/viewer_resolution_monogenic_signal.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-01-08T13:11:38,093 copying build/lib/xmipp3/viewers/viewer_reconstruct_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-01-08T13:11:38,095 copying build/lib/xmipp3/viewers/viewer_structure_map.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-01-08T13:11:38,097 copying build/lib/xmipp3/viewers/viewer_resolution_deepres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-01-08T13:11:38,100 copying build/lib/xmipp3/viewers/viewer_eliminate_empty_images.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-01-08T13:11:38,102 copying build/lib/xmipp3/viewers/viewer_cl2d_clustering.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-01-08T13:11:38,104 copying build/lib/xmipp3/viewers/viewer_LL_matrix.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-01-08T13:11:38,107 copying build/lib/xmipp3/viewers/plotter.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-01-08T13:11:38,108 copying build/lib/xmipp3/viewers/viewer_analyze_local_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-01-08T13:11:38,111 copying build/lib/xmipp3/viewers/viewer_ctf_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-01-08T13:11:38,113 copying build/lib/xmipp3/viewers/viewer_volume_deform_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-01-08T13:11:38,115 copying build/lib/xmipp3/viewers/viewer_resolution_directional.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-01-08T13:11:38,118 copying build/lib/xmipp3/viewers/viewer_movie_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-01-08T13:11:38,120 copying build/lib/xmipp3/viewers/viewer_deep_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-01-08T13:11:38,122 copying build/lib/xmipp3/viewers/viewer_volume_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-01-08T13:11:38,124 copying build/lib/xmipp3/viewers/viewer_local_sharpening.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-01-08T13:11:38,126 copying build/lib/xmipp3/viewers/viewer.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-01-08T13:11:38,129 copying build/lib/xmipp3/viewers/viewer_deep_micrograph_cleaner.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-01-08T13:11:38,131 copying build/lib/xmipp3/viewers/viewer_consensus_classes.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-01-08T13:11:38,133 copying build/lib/xmipp3/viewers/viewer_resolution_bfactor.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-01-08T13:11:38,135 copying build/lib/xmipp3/viewers/viewer_cl2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-01-08T13:11:38,138 copying build/lib/xmipp3/checkProtocolsConf.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-01-08T13:11:38,139 copying build/lib/xmipp3/constants.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-01-08T13:11:38,142 creating build/bdist.linux-armv7l/wheel/xmipp3/legacy 2026-01-08T13:11:38,143 copying build/lib/xmipp3/legacy/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy 2026-01-08T13:11:38,145 creating build/bdist.linux-armv7l/wheel/xmipp3/legacy/protocols 2026-01-08T13:11:38,146 copying build/lib/xmipp3/legacy/protocols/protocol_metaprotocol_discrete_heterogeneity_scheduler.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-01-08T13:11:38,149 copying build/lib/xmipp3/legacy/protocols/protocol_split_volume_hierarchical_cluster.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-01-08T13:11:38,152 copying build/lib/xmipp3/legacy/protocols/protocol_metaprotocol_create_subset.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-01-08T13:11:38,154 copying build/lib/xmipp3/legacy/protocols/protocol_metaprotocol_create_output.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-01-08T13:11:38,156 copying build/lib/xmipp3/legacy/protocols/protocol_rotational_spectra.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-01-08T13:11:38,158 copying build/lib/xmipp3/legacy/protocols/protocol_classify_kmeans2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-01-08T13:11:38,160 copying build/lib/xmipp3/legacy/protocols/protocol_solid_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-01-08T13:11:38,163 copying build/lib/xmipp3/legacy/protocols/protocol_kmeans_clustering.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-01-08T13:11:38,166 copying build/lib/xmipp3/legacy/protocols/protocol_metaprotocol_golden_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-01-08T13:11:38,168 copying build/lib/xmipp3/legacy/protocols/protocol_movie_opticalflow.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-01-08T13:11:38,171 copying build/lib/xmipp3/legacy/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-01-08T13:11:38,173 copying build/lib/xmipp3/legacy/protocols/protocol_particle_boxsize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-01-08T13:11:38,175 copying build/lib/xmipp3/legacy/protocols/protocol_extract_particles_movies.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-01-08T13:11:38,177 copying build/lib/xmipp3/legacy/protocols/protocol_apply_deformation_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-01-08T13:11:38,179 copying build/lib/xmipp3/legacy/protocols/protocol_classification_gpuCorr_semi.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-01-08T13:11:38,182 copying build/lib/xmipp3/legacy/protocols/protocol_deep_denoising.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-01-08T13:11:38,185 copying build/lib/xmipp3/legacy/protocols/protocol_movie_average.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-01-08T13:11:38,187 copying build/lib/xmipp3/legacy/protocols/protocol_deep_align.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-01-08T13:11:38,190 copying build/lib/xmipp3/legacy/protocols/protocol_classification_gpuCorr.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-01-08T13:11:38,193 copying build/lib/xmipp3/legacy/protocols/protocol_classification_gpuCorr_full.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-01-08T13:11:38,196 copying build/lib/xmipp3/legacy/protocols/protocol_screen_deeplearning.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-01-08T13:11:38,198 copying build/lib/xmipp3/legacy/protocols/protocol_reconstruct_heterogeneous.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-01-08T13:11:38,201 copying build/lib/xmipp3/legacy/protocols/protocol_angular_resolution_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-01-08T13:11:38,204 copying build/lib/xmipp3/legacy/protocols/protocol_enrich.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-01-08T13:11:38,206 copying build/lib/xmipp3/legacy/protocols/protocol_split_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-01-08T13:11:38,208 copying build/lib/xmipp3/legacy/protocols/protocol_subtract_projection.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-01-08T13:11:38,211 copying build/lib/xmipp3/legacy/protocols/protocol_mltomo.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-01-08T13:11:38,214 creating build/bdist.linux-armv7l/wheel/xmipp3/legacy/viewers 2026-01-08T13:11:38,215 copying build/lib/xmipp3/legacy/viewers/viewer_mltomo.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers 2026-01-08T13:11:38,217 copying build/lib/xmipp3/legacy/viewers/viewer_metaprotocol_golden_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers 2026-01-08T13:11:38,219 copying build/lib/xmipp3/legacy/viewers/viewer_deep_align.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers 2026-01-08T13:11:38,221 copying build/lib/xmipp3/legacy/viewers/viewer_angular_resolution_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers 2026-01-08T13:11:38,224 copying build/lib/xmipp3/legacy/viewers/viewer_solid_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers 2026-01-08T13:11:38,226 copying build/lib/xmipp3/legacy/viewers/viewer_split_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers 2026-01-08T13:11:38,228 creating build/bdist.linux-armv7l/wheel/xmipp3/legacy/tests 2026-01-08T13:11:38,229 copying build/lib/xmipp3/legacy/tests/test_protocols_gpuCorr_semiStreaming.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-01-08T13:11:38,231 copying build/lib/xmipp3/legacy/tests/test_protocols_gpuCorr_classifier.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-01-08T13:11:38,233 copying build/lib/xmipp3/legacy/tests/test_protocols_xmipp_movies.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-01-08T13:11:38,236 copying build/lib/xmipp3/legacy/tests/test_protocols_subtract_projection.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-01-08T13:11:38,239 copying build/lib/xmipp3/legacy/tests/test_protocol_deep_denoising.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-01-08T13:11:38,240 copying build/lib/xmipp3/legacy/tests/test_protocols_metaprotocol_golden_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-01-08T13:11:38,242 copying build/lib/xmipp3/legacy/tests/test_protocols_metaprotocol_heterogeneity.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-01-08T13:11:38,244 copying build/lib/xmipp3/legacy/tests/test_protocols_angular_resolution_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-01-08T13:11:38,246 copying build/lib/xmipp3/legacy/tests/test_protocols_solid_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-01-08T13:11:38,248 copying build/lib/xmipp3/legacy/tests/test_protocols_mixed_movies.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-01-08T13:11:38,250 copying build/lib/xmipp3/legacy/tests/test_protocols_gpuCorr_fullStreaming.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-01-08T13:11:38,253 copying build/lib/xmipp3/logParser.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-01-08T13:11:38,255 copying build/lib/xmipp3/xmipp_logo.png -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-01-08T13:11:38,259 creating build/bdist.linux-armv7l/wheel/xmipp3/tests 2026-01-08T13:11:38,260 copying build/lib/xmipp3/tests/test_protocol_angular_graph_consistency.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-01-08T13:11:38,262 copying build/lib/xmipp3/tests/test_protocol_ctf_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-01-08T13:11:38,265 copying build/lib/xmipp3/tests/test_protocol_consensus_classes3D.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-01-08T13:11:38,267 copying build/lib/xmipp3/tests/test_protocol_split_frames.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-01-08T13:11:38,269 copying build/lib/xmipp3/tests/test_protocol_compare_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-01-08T13:11:38,271 copying build/lib/xmipp3/tests/test_protocols_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-01-08T13:11:38,274 copying build/lib/xmipp3/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-01-08T13:11:38,275 copying build/lib/xmipp3/tests/test_protocols_xmipp_movies.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-01-08T13:11:38,278 copying build/lib/xmipp3/tests/test_protocol_monodir.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-01-08T13:11:38,280 copying build/lib/xmipp3/tests/test_protocols_continuousflex.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-01-08T13:11:38,282 copying build/lib/xmipp3/tests/test_protocols_add_noise.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-01-08T13:11:38,284 copying build/lib/xmipp3/tests/test_protocols_realignment_classes.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-01-08T13:11:38,286 copying build/lib/xmipp3/tests/test_protocols_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-01-08T13:11:38,288 copying build/lib/xmipp3/tests/test_protocol_multireference_alignability.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-01-08T13:11:38,291 copying build/lib/xmipp3/tests/test_protocols_monores.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-01-08T13:11:38,293 copying build/lib/xmipp3/tests/test_protocols_xmipp_2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-01-08T13:11:38,296 copying build/lib/xmipp3/tests/test_protocol_apply_transformation_matrix.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-01-08T13:11:38,299 copying build/lib/xmipp3/tests/test_protocols_deepVolPostprocessing.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-01-08T13:11:38,301 copying build/lib/xmipp3/tests/test_protocols_localdeblur.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-01-08T13:11:38,304 copying build/lib/xmipp3/tests/test_protocol_screen_deepConsensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-01-08T13:11:38,306 copying build/lib/xmipp3/tests/test_protocols_xmipp_mics.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-01-08T13:11:38,309 copying build/lib/xmipp3/tests/test_protocol_validate_overfitting.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-01-08T13:11:38,311 copying build/lib/xmipp3/tests/test_protocols_deepcenter_predict.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-01-08T13:11:38,313 copying build/lib/xmipp3/tests/test_protocol_extract_asymmetric_unit.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-01-08T13:11:38,315 copying build/lib/xmipp3/tests/test_protocol_reconstruct_fourier.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-01-08T13:11:38,317 copying build/lib/xmipp3/tests/test_protocol_likelihood.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-01-08T13:11:38,319 copying build/lib/xmipp3/tests/test_protocol_simulate_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-01-08T13:11:38,322 copying build/lib/xmipp3/tests/test_convert_xmipp.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-01-08T13:11:38,325 copying build/lib/xmipp3/tests/test_protocols_xmipp_movie_resize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-01-08T13:11:38,327 copying build/lib/xmipp3/tests/test_protocols_fso.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-01-08T13:11:38,329 copying build/lib/xmipp3/tests/test_protocols_local_defocus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-01-08T13:11:38,332 copying build/lib/xmipp3/tests/test_protocol_validate_fscq.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-01-08T13:11:38,334 copying build/lib/xmipp3/tests/test_protocol_multiple_fsc.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-01-08T13:11:38,335 copying build/lib/xmipp3/tests/test_protocols_deepres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-01-08T13:11:38,337 copying build/lib/xmipp3/tests/test_protocols_xmipp_3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-01-08T13:11:38,341 running install_egg_info 2026-01-08T13:11:38,347 Copying scipion_em_xmipp.egg-info to build/bdist.linux-armv7l/wheel/./scipion_em_xmipp-26.1.0-py3.11.egg-info 2026-01-08T13:11:38,358 running install_scripts 2026-01-08T13:11:38,371 creating build/bdist.linux-armv7l/wheel/scipion_em_xmipp-26.1.0.dist-info/WHEEL 2026-01-08T13:11:38,374 creating '/tmp/pip-wheel-0rafnvr1/.tmp-gwcslh0x/scipion_em_xmipp-26.1.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-01-08T13:11:38,382 adding 'scipion_em_xmipp-26.1.0.dist-info/licenses/LICENSE' 2026-01-08T13:11:38,385 adding 'xmipp3/__init__.py' 2026-01-08T13:11:38,388 adding 'xmipp3/base.py' 2026-01-08T13:11:38,392 adding 'xmipp3/bibtex.py' 2026-01-08T13:11:38,393 adding 'xmipp3/checkProtocolsConf.py' 2026-01-08T13:11:38,395 adding 'xmipp3/constants.py' 2026-01-08T13:11:38,396 adding 'xmipp3/logParser.py' 2026-01-08T13:11:38,398 adding 'xmipp3/programs.py' 2026-01-08T13:11:38,400 adding 'xmipp3/protocols.conf' 2026-01-08T13:11:38,402 adding 'xmipp3/protocolsCollectInfo.py' 2026-01-08T13:11:38,404 adding 'xmipp3/utils.py' 2026-01-08T13:11:38,405 adding 'xmipp3/version.py' 2026-01-08T13:11:38,407 adding 'xmipp3/wizards.py' 2026-01-08T13:11:38,419 adding 'xmipp3/xmipp_logo.png' 2026-01-08T13:11:38,509 adding 'xmipp3/xmipp_logo_devel.png' 2026-01-08T13:11:38,515 adding 'xmipp3/convert/__init__.py' 2026-01-08T13:11:38,523 adding 'xmipp3/convert/convert.py' 2026-01-08T13:11:38,526 adding 'xmipp3/convert/dataimport.py' 2026-01-08T13:11:38,527 adding 'xmipp3/convert/io_coordinates.py' 2026-01-08T13:11:38,529 adding 'xmipp3/legacy/__init__.py' 2026-01-08T13:11:38,531 adding 'xmipp3/legacy/protocols/__init__.py' 2026-01-08T13:11:38,533 adding 'xmipp3/legacy/protocols/protocol_angular_resolution_alignment.py' 2026-01-08T13:11:38,534 adding 'xmipp3/legacy/protocols/protocol_apply_deformation_zernike3d.py' 2026-01-08T13:11:38,538 adding 'xmipp3/legacy/protocols/protocol_classification_gpuCorr.py' 2026-01-08T13:11:38,543 adding 'xmipp3/legacy/protocols/protocol_classification_gpuCorr_full.py' 2026-01-08T13:11:38,546 adding 'xmipp3/legacy/protocols/protocol_classification_gpuCorr_semi.py' 2026-01-08T13:11:38,548 adding 'xmipp3/legacy/protocols/protocol_classify_kmeans2d.py' 2026-01-08T13:11:38,552 adding 'xmipp3/legacy/protocols/protocol_deep_align.py' 2026-01-08T13:11:38,555 adding 'xmipp3/legacy/protocols/protocol_deep_denoising.py' 2026-01-08T13:11:38,557 adding 'xmipp3/legacy/protocols/protocol_enrich.py' 2026-01-08T13:11:38,561 adding 'xmipp3/legacy/protocols/protocol_extract_particles_movies.py' 2026-01-08T13:11:38,562 adding 'xmipp3/legacy/protocols/protocol_kmeans_clustering.py' 2026-01-08T13:11:38,564 adding 'xmipp3/legacy/protocols/protocol_metaprotocol_create_output.py' 2026-01-08T13:11:38,566 adding 'xmipp3/legacy/protocols/protocol_metaprotocol_create_subset.py' 2026-01-08T13:11:38,569 adding 'xmipp3/legacy/protocols/protocol_metaprotocol_discrete_heterogeneity_scheduler.py' 2026-01-08T13:11:38,572 adding 'xmipp3/legacy/protocols/protocol_metaprotocol_golden_highres.py' 2026-01-08T13:11:38,575 adding 'xmipp3/legacy/protocols/protocol_mltomo.py' 2026-01-08T13:11:38,577 adding 'xmipp3/legacy/protocols/protocol_movie_average.py' 2026-01-08T13:11:38,580 adding 'xmipp3/legacy/protocols/protocol_movie_opticalflow.py' 2026-01-08T13:11:38,582 adding 'xmipp3/legacy/protocols/protocol_particle_boxsize.py' 2026-01-08T13:11:38,587 adding 'xmipp3/legacy/protocols/protocol_reconstruct_heterogeneous.py' 2026-01-08T13:11:38,589 adding 'xmipp3/legacy/protocols/protocol_rotational_spectra.py' 2026-01-08T13:11:38,592 adding 'xmipp3/legacy/protocols/protocol_screen_deeplearning.py' 2026-01-08T13:11:38,595 adding 'xmipp3/legacy/protocols/protocol_solid_angles.py' 2026-01-08T13:11:38,597 adding 'xmipp3/legacy/protocols/protocol_split_volume.py' 2026-01-08T13:11:38,602 adding 'xmipp3/legacy/protocols/protocol_split_volume_hierarchical_cluster.py' 2026-01-08T13:11:38,604 adding 'xmipp3/legacy/protocols/protocol_subtract_projection.py' 2026-01-08T13:11:38,606 adding 'xmipp3/legacy/tests/test_protocol_deep_denoising.py' 2026-01-08T13:11:38,607 adding 'xmipp3/legacy/tests/test_protocols_angular_resolution_alignment.py' 2026-01-08T13:11:38,609 adding 'xmipp3/legacy/tests/test_protocols_gpuCorr_classifier.py' 2026-01-08T13:11:38,611 adding 'xmipp3/legacy/tests/test_protocols_gpuCorr_fullStreaming.py' 2026-01-08T13:11:38,612 adding 'xmipp3/legacy/tests/test_protocols_gpuCorr_semiStreaming.py' 2026-01-08T13:11:38,614 adding 'xmipp3/legacy/tests/test_protocols_metaprotocol_golden_highres.py' 2026-01-08T13:11:38,615 adding 'xmipp3/legacy/tests/test_protocols_metaprotocol_heterogeneity.py' 2026-01-08T13:11:38,617 adding 'xmipp3/legacy/tests/test_protocols_mixed_movies.py' 2026-01-08T13:11:38,619 adding 'xmipp3/legacy/tests/test_protocols_solid_angles.py' 2026-01-08T13:11:38,625 adding 'xmipp3/legacy/tests/test_protocols_subtract_projection.py' 2026-01-08T13:11:38,627 adding 'xmipp3/legacy/tests/test_protocols_xmipp_movies.py' 2026-01-08T13:11:38,629 adding 'xmipp3/legacy/viewers/viewer_angular_resolution_alignment.py' 2026-01-08T13:11:38,631 adding 'xmipp3/legacy/viewers/viewer_deep_align.py' 2026-01-08T13:11:38,632 adding 'xmipp3/legacy/viewers/viewer_metaprotocol_golden_highres.py' 2026-01-08T13:11:38,634 adding 'xmipp3/legacy/viewers/viewer_mltomo.py' 2026-01-08T13:11:38,636 adding 'xmipp3/legacy/viewers/viewer_solid_angles.py' 2026-01-08T13:11:38,638 adding 'xmipp3/legacy/viewers/viewer_split_volume.py' 2026-01-08T13:11:38,642 adding 'xmipp3/protocols/__init__.py' 2026-01-08T13:11:38,645 adding 'xmipp3/protocols/protocol_align_volume.py' 2026-01-08T13:11:38,648 adding 'xmipp3/protocols/protocol_align_volume_and_particles.py' 2026-01-08T13:11:38,650 adding 'xmipp3/protocols/protocol_analyze_local_ctf.py' 2026-01-08T13:11:38,653 adding 'xmipp3/protocols/protocol_angular_graph_consistency.py' 2026-01-08T13:11:38,655 adding 'xmipp3/protocols/protocol_apply_alignment.py' 2026-01-08T13:11:38,657 adding 'xmipp3/protocols/protocol_apply_tilt_to_ctf.py' 2026-01-08T13:11:38,659 adding 'xmipp3/protocols/protocol_apply_transformation_matrix.py' 2026-01-08T13:11:38,661 adding 'xmipp3/protocols/protocol_apply_zernike3d.py' 2026-01-08T13:11:38,662 adding 'xmipp3/protocols/protocol_assignment_tilt_pair.py' 2026-01-08T13:11:38,664 adding 'xmipp3/protocols/protocol_break_symmetry.py' 2026-01-08T13:11:38,666 adding 'xmipp3/protocols/protocol_center_particles.py' 2026-01-08T13:11:38,670 adding 'xmipp3/protocols/protocol_cl2d.py' 2026-01-08T13:11:38,671 adding 'xmipp3/protocols/protocol_cl2d_align.py' 2026-01-08T13:11:38,674 adding 'xmipp3/protocols/protocol_cl2d_clustering.py' 2026-01-08T13:11:38,676 adding 'xmipp3/protocols/protocol_classes_2d_mapping.py' 2026-01-08T13:11:38,679 adding 'xmipp3/protocols/protocol_classify_pca.py' 2026-01-08T13:11:38,683 adding 'xmipp3/protocols/protocol_classify_pca_streaming.py' 2026-01-08T13:11:38,685 adding 'xmipp3/protocols/protocol_compare_angles.py' 2026-01-08T13:11:38,688 adding 'xmipp3/protocols/protocol_compare_reprojections.py' 2026-01-08T13:11:38,691 adding 'xmipp3/protocols/protocol_compute_likelihood.py' 2026-01-08T13:11:38,694 adding 'xmipp3/protocols/protocol_consensus_classes.py' 2026-01-08T13:11:38,696 adding 'xmipp3/protocols/protocol_consensus_local_ctf.py' 2026-01-08T13:11:38,698 adding 'xmipp3/protocols/protocol_convert_pdb.py' 2026-01-08T13:11:38,700 adding 'xmipp3/protocols/protocol_core_analysis.py' 2026-01-08T13:11:38,702 adding 'xmipp3/protocols/protocol_create_gallery.py' 2026-01-08T13:11:38,706 adding 'xmipp3/protocols/protocol_ctf_consensus.py' 2026-01-08T13:11:38,708 adding 'xmipp3/protocols/protocol_ctf_correct_phase.py' 2026-01-08T13:11:38,709 adding 'xmipp3/protocols/protocol_ctf_correct_wiener2d.py' 2026-01-08T13:11:38,711 adding 'xmipp3/protocols/protocol_ctf_defocus_group.py' 2026-01-08T13:11:38,714 adding 'xmipp3/protocols/protocol_ctf_micrographs.py' 2026-01-08T13:11:38,716 adding 'xmipp3/protocols/protocol_deep_center.py' 2026-01-08T13:11:38,717 adding 'xmipp3/protocols/protocol_deep_center_predict.py' 2026-01-08T13:11:38,719 adding 'xmipp3/protocols/protocol_deep_hand.py' 2026-01-08T13:11:38,723 adding 'xmipp3/protocols/protocol_deep_micrograph_screen.py' 2026-01-08T13:11:38,725 adding 'xmipp3/protocols/protocol_denoise_particles.py' 2026-01-08T13:11:38,728 adding 'xmipp3/protocols/protocol_eliminate_empty_images.py' 2026-01-08T13:11:38,729 adding 'xmipp3/protocols/protocol_extract_asymmetric_unit.py' 2026-01-08T13:11:38,733 adding 'xmipp3/protocols/protocol_extract_particles.py' 2026-01-08T13:11:38,736 adding 'xmipp3/protocols/protocol_extract_particles_pairs.py' 2026-01-08T13:11:38,739 adding 'xmipp3/protocols/protocol_flexalign.py' 2026-01-08T13:11:38,741 adding 'xmipp3/protocols/protocol_generate_reprojections.py' 2026-01-08T13:11:38,743 adding 'xmipp3/protocols/protocol_helical_parameters.py' 2026-01-08T13:11:38,745 adding 'xmipp3/protocols/protocol_kerdensom.py' 2026-01-08T13:11:38,746 adding 'xmipp3/protocols/protocol_local_ctf.py' 2026-01-08T13:11:38,748 adding 'xmipp3/protocols/protocol_mics_defocus_balancer.py' 2026-01-08T13:11:38,751 adding 'xmipp3/protocols/protocol_ml2d.py' 2026-01-08T13:11:38,754 adding 'xmipp3/protocols/protocol_movie_alignment_consensus.py' 2026-01-08T13:11:38,757 adding 'xmipp3/protocols/protocol_movie_dose_analysis.py' 2026-01-08T13:11:38,760 adding 'xmipp3/protocols/protocol_movie_gain.py' 2026-01-08T13:11:38,763 adding 'xmipp3/protocols/protocol_movie_max_shift.py' 2026-01-08T13:11:38,765 adding 'xmipp3/protocols/protocol_movie_split_frames.py' 2026-01-08T13:11:38,767 adding 'xmipp3/protocols/protocol_multiple_fscs.py' 2026-01-08T13:11:38,770 adding 'xmipp3/protocols/protocol_multireference_alignability.py' 2026-01-08T13:11:38,771 adding 'xmipp3/protocols/protocol_normalize_strain.py' 2026-01-08T13:11:38,773 adding 'xmipp3/protocols/protocol_particle_pick.py' 2026-01-08T13:11:38,775 adding 'xmipp3/protocols/protocol_particle_pick_automatic.py' 2026-01-08T13:11:38,777 adding 'xmipp3/protocols/protocol_particle_pick_consensus.py' 2026-01-08T13:11:38,779 adding 'xmipp3/protocols/protocol_particle_pick_pairs.py' 2026-01-08T13:11:38,781 adding 'xmipp3/protocols/protocol_particle_pick_remove_duplicates.py' 2026-01-08T13:11:38,782 adding 'xmipp3/protocols/protocol_phantom_create.py' 2026-01-08T13:11:38,784 adding 'xmipp3/protocols/protocol_pick_noise.py' 2026-01-08T13:11:38,786 adding 'xmipp3/protocols/protocol_postProcessing_deepPostProcessing.py' 2026-01-08T13:11:38,789 adding 'xmipp3/protocols/protocol_preprocess_micrographs.py' 2026-01-08T13:11:38,791 adding 'xmipp3/protocols/protocol_random_conical_tilt.py' 2026-01-08T13:11:38,795 adding 'xmipp3/protocols/protocol_ransac.py' 2026-01-08T13:11:38,797 adding 'xmipp3/protocols/protocol_reconstruct_fourier.py' 2026-01-08T13:11:38,807 adding 'xmipp3/protocols/protocol_reconstruct_highres.py' 2026-01-08T13:11:38,811 adding 'xmipp3/protocols/protocol_reconstruct_significant.py' 2026-01-08T13:11:38,814 adding 'xmipp3/protocols/protocol_reconstruct_swarm.py' 2026-01-08T13:11:38,816 adding 'xmipp3/protocols/protocol_resolution3d.py' 2026-01-08T13:11:38,818 adding 'xmipp3/protocols/protocol_resolution_bfactor.py' 2026-01-08T13:11:38,820 adding 'xmipp3/protocols/protocol_resolution_deepres.py' 2026-01-08T13:11:38,822 adding 'xmipp3/protocols/protocol_resolution_directional.py' 2026-01-08T13:11:38,824 adding 'xmipp3/protocols/protocol_resolution_fso.py' 2026-01-08T13:11:38,827 adding 'xmipp3/protocols/protocol_resolution_monogenic_signal.py' 2026-01-08T13:11:38,828 adding 'xmipp3/protocols/protocol_rotate_volume.py' 2026-01-08T13:11:38,830 adding 'xmipp3/protocols/protocol_rotational_symmetry.py' 2026-01-08T13:11:38,840 adding 'xmipp3/protocols/protocol_screen_deepConsensus.py' 2026-01-08T13:11:38,843 adding 'xmipp3/protocols/protocol_screen_particles.py' 2026-01-08T13:11:38,845 adding 'xmipp3/protocols/protocol_shift_particles.py' 2026-01-08T13:11:38,846 adding 'xmipp3/protocols/protocol_shift_volume.py' 2026-01-08T13:11:38,848 adding 'xmipp3/protocols/protocol_simulate_ctf.py' 2026-01-08T13:11:38,850 adding 'xmipp3/protocols/protocol_structure_map.py' 2026-01-08T13:11:38,853 adding 'xmipp3/protocols/protocol_structure_map_zernike3d.py' 2026-01-08T13:11:38,855 adding 'xmipp3/protocols/protocol_subtract_projection.py' 2026-01-08T13:11:38,858 adding 'xmipp3/protocols/protocol_tilt_analysis.py' 2026-01-08T13:11:38,860 adding 'xmipp3/protocols/protocol_trigger_data.py' 2026-01-08T13:11:38,863 adding 'xmipp3/protocols/protocol_validate_fscq.py' 2026-01-08T13:11:38,866 adding 'xmipp3/protocols/protocol_validate_nontilt.py' 2026-01-08T13:11:38,869 adding 'xmipp3/protocols/protocol_validate_overfitting.py' 2026-01-08T13:11:38,871 adding 'xmipp3/protocols/protocol_volume_adjust_sub.py' 2026-01-08T13:11:38,873 adding 'xmipp3/protocols/protocol_volume_consensus.py' 2026-01-08T13:11:38,874 adding 'xmipp3/protocols/protocol_volume_deform_zernike3d.py' 2026-01-08T13:11:38,876 adding 'xmipp3/protocols/protocol_volume_local_adjust.py' 2026-01-08T13:11:38,878 adding 'xmipp3/protocols/protocol_volume_local_sharpening.py' 2026-01-08T13:11:38,880 adding 'xmipp3/protocols/protocol_volume_strain.py' 2026-01-08T13:11:38,881 adding 'xmipp3/protocols/protocol_write_testC.py' 2026-01-08T13:11:38,883 adding 'xmipp3/protocols/protocol_write_testP.py' 2026-01-08T13:11:38,885 adding 'xmipp3/protocols/protocol_preprocess/__init__.py' 2026-01-08T13:11:38,887 adding 'xmipp3/protocols/protocol_preprocess/geometrical_mask.py' 2026-01-08T13:11:38,889 adding 'xmipp3/protocols/protocol_preprocess/protocol_add_noise.py' 2026-01-08T13:11:38,891 adding 'xmipp3/protocols/protocol_preprocess/protocol_create_mask2d.py' 2026-01-08T13:11:38,893 adding 'xmipp3/protocols/protocol_preprocess/protocol_create_mask3d.py' 2026-01-08T13:11:38,896 adding 'xmipp3/protocols/protocol_preprocess/protocol_crop_resize.py' 2026-01-08T13:11:38,899 adding 'xmipp3/protocols/protocol_preprocess/protocol_filter.py' 2026-01-08T13:11:38,901 adding 'xmipp3/protocols/protocol_preprocess/protocol_image_operate.py' 2026-01-08T13:11:38,903 adding 'xmipp3/protocols/protocol_preprocess/protocol_mask.py' 2026-01-08T13:11:38,905 adding 'xmipp3/protocols/protocol_preprocess/protocol_movie_resize.py' 2026-01-08T13:11:38,909 adding 'xmipp3/protocols/protocol_preprocess/protocol_preprocess.py' 2026-01-08T13:11:38,911 adding 'xmipp3/protocols/protocol_preprocess/protocol_process.py' 2026-01-08T13:11:38,913 adding 'xmipp3/protocols/protocol_projmatch/__init__.py' 2026-01-08T13:11:38,916 adding 'xmipp3/protocols/protocol_projmatch/projmatch_form.py' 2026-01-08T13:11:38,918 adding 'xmipp3/protocols/protocol_projmatch/projmatch_initialize.py' 2026-01-08T13:11:38,922 adding 'xmipp3/protocols/protocol_projmatch/projmatch_steps.py' 2026-01-08T13:11:38,925 adding 'xmipp3/protocols/protocol_projmatch/protocol_projmatch.py' 2026-01-08T13:11:38,928 adding 'xmipp3/tests/__init__.py' 2026-01-08T13:11:38,931 adding 'xmipp3/tests/test_convert_xmipp.py' 2026-01-08T13:11:38,933 adding 'xmipp3/tests/test_protocol_angular_graph_consistency.py' 2026-01-08T13:11:38,935 adding 'xmipp3/tests/test_protocol_apply_transformation_matrix.py' 2026-01-08T13:11:38,936 adding 'xmipp3/tests/test_protocol_compare_angles.py' 2026-01-08T13:11:38,938 adding 'xmipp3/tests/test_protocol_consensus_classes3D.py' 2026-01-08T13:11:38,940 adding 'xmipp3/tests/test_protocol_ctf_consensus.py' 2026-01-08T13:11:38,942 adding 'xmipp3/tests/test_protocol_extract_asymmetric_unit.py' 2026-01-08T13:11:38,944 adding 'xmipp3/tests/test_protocol_likelihood.py' 2026-01-08T13:11:38,945 adding 'xmipp3/tests/test_protocol_monodir.py' 2026-01-08T13:11:38,946 adding 'xmipp3/tests/test_protocol_multiple_fsc.py' 2026-01-08T13:11:38,948 adding 'xmipp3/tests/test_protocol_multireference_alignability.py' 2026-01-08T13:11:38,949 adding 'xmipp3/tests/test_protocol_reconstruct_fourier.py' 2026-01-08T13:11:38,951 adding 'xmipp3/tests/test_protocol_screen_deepConsensus.py' 2026-01-08T13:11:38,952 adding 'xmipp3/tests/test_protocol_simulate_ctf.py' 2026-01-08T13:11:38,954 adding 'xmipp3/tests/test_protocol_split_frames.py' 2026-01-08T13:11:38,955 adding 'xmipp3/tests/test_protocol_validate_fscq.py' 2026-01-08T13:11:38,957 adding 'xmipp3/tests/test_protocol_validate_overfitting.py' 2026-01-08T13:11:38,958 adding 'xmipp3/tests/test_protocols_add_noise.py' 2026-01-08T13:11:38,960 adding 'xmipp3/tests/test_protocols_continuousflex.py' 2026-01-08T13:11:38,962 adding 'xmipp3/tests/test_protocols_deepVolPostprocessing.py' 2026-01-08T13:11:38,963 adding 'xmipp3/tests/test_protocols_deepcenter_predict.py' 2026-01-08T13:11:38,964 adding 'xmipp3/tests/test_protocols_deepres.py' 2026-01-08T13:11:38,966 adding 'xmipp3/tests/test_protocols_fso.py' 2026-01-08T13:11:38,967 adding 'xmipp3/tests/test_protocols_highres.py' 2026-01-08T13:11:38,969 adding 'xmipp3/tests/test_protocols_local_defocus.py' 2026-01-08T13:11:38,970 adding 'xmipp3/tests/test_protocols_localdeblur.py' 2026-01-08T13:11:38,972 adding 'xmipp3/tests/test_protocols_monores.py' 2026-01-08T13:11:38,973 adding 'xmipp3/tests/test_protocols_realignment_classes.py' 2026-01-08T13:11:38,980 adding 'xmipp3/tests/test_protocols_xmipp_2d.py' 2026-01-08T13:11:38,989 adding 'xmipp3/tests/test_protocols_xmipp_3d.py' 2026-01-08T13:11:38,995 adding 'xmipp3/tests/test_protocols_xmipp_mics.py' 2026-01-08T13:11:38,997 adding 'xmipp3/tests/test_protocols_xmipp_movie_resize.py' 2026-01-08T13:11:39,000 adding 'xmipp3/tests/test_protocols_xmipp_movies.py' 2026-01-08T13:11:39,002 adding 'xmipp3/tests/test_protocols_zernike3d.py' 2026-01-08T13:11:39,004 adding 'xmipp3/viewers/__init__.py' 2026-01-08T13:11:39,006 adding 'xmipp3/viewers/plotter.py' 2026-01-08T13:11:39,008 adding 'xmipp3/viewers/viewer.py' 2026-01-08T13:11:39,010 adding 'xmipp3/viewers/viewer_LL_matrix.py' 2026-01-08T13:11:39,011 adding 'xmipp3/viewers/viewer_analyze_local_ctf.py' 2026-01-08T13:11:39,013 adding 'xmipp3/viewers/viewer_apply_tilt_to_ctf.py' 2026-01-08T13:11:39,015 adding 'xmipp3/viewers/viewer_cl2d.py' 2026-01-08T13:11:39,016 adding 'xmipp3/viewers/viewer_cl2d_clustering.py' 2026-01-08T13:11:39,018 adding 'xmipp3/viewers/viewer_consensus_classes.py' 2026-01-08T13:11:39,020 adding 'xmipp3/viewers/viewer_ctf_consensus.py' 2026-01-08T13:11:39,022 adding 'xmipp3/viewers/viewer_deepEMHancer.py' 2026-01-08T13:11:39,023 adding 'xmipp3/viewers/viewer_deep_consensus.py' 2026-01-08T13:11:39,025 adding 'xmipp3/viewers/viewer_deep_micrograph_cleaner.py' 2026-01-08T13:11:39,027 adding 'xmipp3/viewers/viewer_dose_analysis.py' 2026-01-08T13:11:39,029 adding 'xmipp3/viewers/viewer_eliminate_empty_images.py' 2026-01-08T13:11:39,031 adding 'xmipp3/viewers/viewer_extract_asymmetric_unit.py' 2026-01-08T13:11:39,032 adding 'xmipp3/viewers/viewer_local_sharpening.py' 2026-01-08T13:11:39,034 adding 'xmipp3/viewers/viewer_ml2d.py' 2026-01-08T13:11:39,036 adding 'xmipp3/viewers/viewer_movie_alignment.py' 2026-01-08T13:11:39,037 adding 'xmipp3/viewers/viewer_normalize_strain.py' 2026-01-08T13:11:39,039 adding 'xmipp3/viewers/viewer_pdb_deform_zernike3d.py' 2026-01-08T13:11:39,043 adding 'xmipp3/viewers/viewer_projmatch.py' 2026-01-08T13:11:39,045 adding 'xmipp3/viewers/viewer_ransac.py' 2026-01-08T13:11:39,047 adding 'xmipp3/viewers/viewer_reconstruct_highres.py' 2026-01-08T13:11:39,049 adding 'xmipp3/viewers/viewer_resolution3d.py' 2026-01-08T13:11:39,051 adding 'xmipp3/viewers/viewer_resolution_bfactor.py' 2026-01-08T13:11:39,053 adding 'xmipp3/viewers/viewer_resolution_deepres.py' 2026-01-08T13:11:39,056 adding 'xmipp3/viewers/viewer_resolution_directional.py' 2026-01-08T13:11:39,059 adding 'xmipp3/viewers/viewer_resolution_fso.py' 2026-01-08T13:11:39,061 adding 'xmipp3/viewers/viewer_resolution_monogenic_signal.py' 2026-01-08T13:11:39,064 adding 'xmipp3/viewers/viewer_structure_map.py' 2026-01-08T13:11:39,065 adding 'xmipp3/viewers/viewer_subtract_projection.py' 2026-01-08T13:11:39,067 adding 'xmipp3/viewers/viewer_swarm.py' 2026-01-08T13:11:39,069 adding 'xmipp3/viewers/viewer_validate_fscq.py' 2026-01-08T13:11:39,071 adding 'xmipp3/viewers/viewer_validate_nontilt.py' 2026-01-08T13:11:39,073 adding 'xmipp3/viewers/viewer_validate_overfitting.py' 2026-01-08T13:11:39,074 adding 'xmipp3/viewers/viewer_volume_consensus.py' 2026-01-08T13:11:39,076 adding 'xmipp3/viewers/viewer_volume_deform_zernike3d.py' 2026-01-08T13:11:39,077 adding 'xmipp3/viewers/viewer_volume_strain.py' 2026-01-08T13:11:39,079 adding 'xmipp3/viewers/viewer_volume_subtraction.py' 2026-01-08T13:11:39,080 adding 'scipion_em_xmipp-26.1.0.dist-info/METADATA' 2026-01-08T13:11:39,081 adding 'scipion_em_xmipp-26.1.0.dist-info/WHEEL' 2026-01-08T13:11:39,082 adding 'scipion_em_xmipp-26.1.0.dist-info/entry_points.txt' 2026-01-08T13:11:39,083 adding 'scipion_em_xmipp-26.1.0.dist-info/top_level.txt' 2026-01-08T13:11:39,088 adding 'scipion_em_xmipp-26.1.0.dist-info/RECORD' 2026-01-08T13:11:39,115 removing build/bdist.linux-armv7l/wheel 2026-01-08T13:11:39,284 Building wheel for scipion-em-xmipp (pyproject.toml): finished with status 'done' 2026-01-08T13:11:39,518 Created wheel for scipion-em-xmipp: filename=scipion_em_xmipp-26.1.0-py3-none-any.whl size=1808961 sha256=1b1beb0d1abb7fbc0309ab45513e92c22f8a2cf362b6a6587968baaf74e4eeeb 2026-01-08T13:11:39,519 Stored in directory: /tmp/pip-ephem-wheel-cache-ikopeiy7/wheels/37/7e/93/af1d4c912b35d40ef58743466336cf2b6ccae058259260c6d3 2026-01-08T13:11:39,539 Successfully built scipion-em-xmipp 2026-01-08T13:11:39,594 Removed build tracker: '/tmp/pip-build-tracker-ririni8q'