2026-01-08T13:18:56,088 Created temporary directory: /tmp/pip-ephem-wheel-cache-ble8zpbp 2026-01-08T13:18:56,090 Created temporary directory: /tmp/pip-build-tracker-vzf305i1 2026-01-08T13:18:56,091 Initialized build tracking at /tmp/pip-build-tracker-vzf305i1 2026-01-08T13:18:56,091 Created build tracker: /tmp/pip-build-tracker-vzf305i1 2026-01-08T13:18:56,092 Entered build tracker: /tmp/pip-build-tracker-vzf305i1 2026-01-08T13:18:56,092 Created temporary directory: /tmp/pip-wheel-el_gor_3 2026-01-08T13:18:56,096 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-01-08T13:18:56,098 Created temporary directory: /tmp/pip-ephem-wheel-cache-6fgy6u4o 2026-01-08T13:18:56,119 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-01-08T13:18:56,123 2 location(s) to search for versions of lobster-ai: 2026-01-08T13:18:56,123 * https://pypi.org/simple/lobster-ai/ 2026-01-08T13:18:56,123 * https://www.piwheels.org/simple/lobster-ai/ 2026-01-08T13:18:56,123 Fetching project page and analyzing links: https://pypi.org/simple/lobster-ai/ 2026-01-08T13:18:56,124 Getting page https://pypi.org/simple/lobster-ai/ 2026-01-08T13:18:56,126 Found index url https://pypi.org/simple 2026-01-08T13:18:56,339 Fetched page https://pypi.org/simple/lobster-ai/ as application/vnd.pypi.simple.v1+json 2026-01-08T13:18:56,345 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/28/50/4706e55b526417192c7d0734f9300f26cbaa6f3404a258dc5e23932755d8/lobster_ai-0.4.0.7-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T13:18:56,346 Found link https://files.pythonhosted.org/packages/a8/80/ed27ba2c77f7614bf149a697b450c4828da9d56fe5c8d3f0090165bf76fc/lobster_ai-0.4.0.7.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.0.7 2026-01-08T13:18:56,347 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/d6/d8/90aa06db1b87347873b4ce21d57d45a24c7c9a7f357128242401dacf90ee/lobster_ai-0.4.0.8-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T13:18:56,348 Found link https://files.pythonhosted.org/packages/69/86/8a4b462df9a8118f3de7e0685672bda6cb876c8345b4434923a5c5e941ff/lobster_ai-0.4.0.8.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.0.8 2026-01-08T13:18:56,348 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/82/31/78340295ff44b67ccc4c5caaa6719063d7474604cd61fa9262fc35d4d956/lobster_ai-0.4.0.9-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T13:18:56,349 Found link https://files.pythonhosted.org/packages/6f/e1/d7ec868a638125f79b3f450e1ecb1b9e75ed7ba1887b51849531a4b362dc/lobster_ai-0.4.0.9.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.0.9 2026-01-08T13:18:56,350 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/34/e3/df793c9c964fd14f0e798a2b126653fe41689d96f69c0f667eaeaec3b87e/lobster_ai-0.4.1.1-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T13:18:56,351 Found link https://files.pythonhosted.org/packages/3d/08/0884cc34aeec5b95e5d0b58f69dd05ff17ff21a3abfe6a24180066dd8bff/lobster_ai-0.4.1.1.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.1.1 2026-01-08T13:18:56,352 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/dc/16/d16ef722f81cf4491dc14a10a7e1bd220f6e015f7096c449f0b46953eef3/lobster_ai-0.4.1.2-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T13:18:56,352 Found link https://files.pythonhosted.org/packages/26/99/4ba848c11cfd7e2ce9603618c1752cd9a0b6efb80e10057f29cc5f8bcd99/lobster_ai-0.4.1.2.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.1.2 2026-01-08T13:18:56,353 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/c7/1e/4907d9395f6cd0423f68ae362692a305f1667f39cbb14748e2445198c84c/lobster_ai-0.4.1.3-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T13:18:56,354 Found link https://files.pythonhosted.org/packages/bf/27/ee3a39812b4ef948a1c918a961b3226551f295303cc9ba81958d83917238/lobster_ai-0.4.1.3.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.1.3 2026-01-08T13:18:56,355 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/bf/b4/ac38db54d1442ddba719f431bb2b6a2396b696617b6701cb8326dc81b8f6/lobster_ai-0.4.1.4-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T13:18:56,356 Found link https://files.pythonhosted.org/packages/25/76/dd6e0450e6ba1cae1eeb0956576d5d07bd08b40d7005b9c768b756af7484/lobster_ai-0.4.1.4.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.1.4 2026-01-08T13:18:56,356 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/fa/c6/d61c31b8779125e2a9cfbffc20fcdb7c3790c8bf64ecb3c74a9571cf1b9a/lobster_ai-0.4.1.5-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T13:18:56,357 Found link https://files.pythonhosted.org/packages/e1/fb/4535dc1c984840956291d1d24e03b91a321639f5a209aa1529becd12d0af/lobster_ai-0.4.1.5.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.1.5 2026-01-08T13:18:56,358 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/ca/97/988cbb274eec6f1beb4865d431331d0881a1bff32e9c973b18331edd98ff/lobster_ai-0.4.1.6-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T13:18:56,359 Found link https://files.pythonhosted.org/packages/42/de/54943a601e8ecc810ab58b7d5a37b5bac1c4f3670d3ebd4004961ef0d28d/lobster_ai-0.4.1.6.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.1.6 2026-01-08T13:18:56,360 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/7a/d2/8b0612b230d6fd156dfcf783b97bc98b6ca4b91e3d9620d1f3ee4d29b43c/lobster_ai-0.4.1.7-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T13:18:56,360 Found link https://files.pythonhosted.org/packages/7d/14/b48f0f96ccf7745c5199ce1ef21ca76ad5ab79bc7edf7e6d470d0a68db26/lobster_ai-0.4.1.7.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.1.7 2026-01-08T13:18:56,361 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/b1/a3/71ed9d870a6ae1bb3edfe7422e227456174b287a2cc1d03332b78c27e6bf/lobster_ai-0.4.1.9-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T13:18:56,362 Found link https://files.pythonhosted.org/packages/93/ab/e2ab297f8e067b57f90da724b7588bbb039f45193fa1d7c46ca06cf65d7e/lobster_ai-0.4.1.9.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.1.9 2026-01-08T13:18:56,363 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/44/3d/f807b25956a3502de7c9a9d08a17813ad763007a2fb52a3234f44f9dca67/lobster_ai-0.4.2.0-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T13:18:56,364 Found link https://files.pythonhosted.org/packages/77/c7/67d0e05386abd2613dcf01d7b4d35e74ece74ebc746483b35574b80655dd/lobster_ai-0.4.2.0.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.2.0 2026-01-08T13:18:56,365 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/a6/45/6887f6a5a1cf91d1aa3affcf7e80bb3e0e00e395b1f3018e62bd0f03f462/lobster_ai-0.4.2.1-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T13:18:56,366 Found link https://files.pythonhosted.org/packages/36/bc/3640189e266c68748b26bfdba01e65eb03e89c86a4dbabed94bc159e63cf/lobster_ai-0.4.2.1.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.2.1 2026-01-08T13:18:56,368 Fetching project page and analyzing links: https://www.piwheels.org/simple/lobster-ai/ 2026-01-08T13:18:56,369 Getting page https://www.piwheels.org/simple/lobster-ai/ 2026-01-08T13:18:56,370 Found index url https://www.piwheels.org/simple 2026-01-08T13:18:56,561 Fetched page https://www.piwheels.org/simple/lobster-ai/ as text/html 2026-01-08T13:18:56,565 Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.2.0-py3-none-any.whl#sha256=8b528935140ed2a0892bdb40f7b66fd20543c14b105e7ff0a3553082014d6290 (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T13:18:56,566 Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.1.9-py3-none-any.whl#sha256=605905694283a743acdfc0bfb13340760d68edb2a17215bc609736da1f423979 (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T13:18:56,566 Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.1.7-py3-none-any.whl#sha256=d5f73a88102ab83530aad98fd331daffe50e5c213851d3140995b8e8ab2c76c2 (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T13:18:56,567 Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.1.6-py3-none-any.whl#sha256=522f41d19d851d030ee5dedb95a4b19a4748ea44ee54236888916b5e6518048d (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T13:18:56,567 Skipping link: No binaries permitted for lobster-ai: 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https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.1.2-py3-none-any.whl#sha256=7f38e7703c88c0c7fe4811c9c7b04da6469ca264d3e261e794b0a59376ba4d0e (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T13:18:56,569 Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.1.1-py3-none-any.whl#sha256=d30d1083ded2235ea62f728b72c55b58d61c4164f9913d1996d68c451dac3c4d (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T13:18:56,569 Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.0.9-py3-none-any.whl#sha256=48a46075806c2941d705fa7eb0da81c1c162cc4b62b1bc22b578315363b4de75 (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T13:18:56,570 Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.0.8-py3-none-any.whl#sha256=a66d81b7558824d17ab891c3a592ceb8ee53492f413d9cfdd89bdecd8fd1de85 (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T13:18:56,571 Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.0.7-py3-none-any.whl#sha256=cbee755d3f7ac5e1cd5b65bfe0309faa4acba90c1a6a1b32036010c45f0868d9 (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-08T13:18:56,571 Skipping link: not a file: https://www.piwheels.org/simple/lobster-ai/ 2026-01-08T13:18:56,572 Skipping link: not a file: https://pypi.org/simple/lobster-ai/ 2026-01-08T13:18:56,592 Given no hashes to check 1 links for project 'lobster-ai': discarding no candidates 2026-01-08T13:18:56,610 Collecting lobster-ai==0.4.2.1 2026-01-08T13:18:56,612 Created temporary directory: /tmp/pip-unpack-axdnx45w 2026-01-08T13:18:56,828 Downloading lobster_ai-0.4.2.1.tar.gz (1.2 MB) 2026-01-08T13:18:57,814 Added lobster-ai==0.4.2.1 from https://files.pythonhosted.org/packages/36/bc/3640189e266c68748b26bfdba01e65eb03e89c86a4dbabed94bc159e63cf/lobster_ai-0.4.2.1.tar.gz to build tracker '/tmp/pip-build-tracker-vzf305i1' 2026-01-08T13:18:57,823 Created temporary directory: /tmp/pip-build-env-tody0q18 2026-01-08T13:18:57,827 Installing build dependencies: started 2026-01-08T13:18:57,828 Running command pip subprocess to install build dependencies 2026-01-08T13:18:59,007 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-01-08T13:18:59,661 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-01-08T13:18:59,685 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-01-08T13:19:01,415 Collecting setuptools>=65.0 2026-01-08T13:19:01,515 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2026-01-08T13:19:01,788 Collecting wheel 2026-01-08T13:19:01,805 Using cached https://www.piwheels.org/simple/wheel/wheel-0.45.1-py3-none-any.whl (72 kB) 2026-01-08T13:19:04,806 Installing collected packages: wheel, setuptools 2026-01-08T13:19:05,045 Creating /tmp/pip-build-env-tody0q18/overlay/local/bin 2026-01-08T13:19:05,049 changing mode of /tmp/pip-build-env-tody0q18/overlay/local/bin/wheel to 755 2026-01-08T13:19:08,716 Successfully installed setuptools-80.9.0 wheel-0.45.1 2026-01-08T13:19:08,989 Installing build dependencies: finished with status 'done' 2026-01-08T13:19:08,995 Getting requirements to build wheel: started 2026-01-08T13:19:08,996 Running command Getting requirements to build wheel 2026-01-08T13:19:09,675 /tmp/pip-build-env-tody0q18/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `license` overwritten by `pyproject.toml` 2026-01-08T13:19:09,675 corresp(dist, value, root_dir) 2026-01-08T13:19:09,676 /tmp/pip-build-env-tody0q18/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2026-01-08T13:19:09,676 corresp(dist, value, root_dir) 2026-01-08T13:19:09,677 /tmp/pip-build-env-tody0q18/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `extras_require` overwritten in `pyproject.toml` (optional-dependencies) 2026-01-08T13:19:09,678 corresp(dist, value, root_dir) 2026-01-08T13:19:09,785 running egg_info 2026-01-08T13:19:09,792 writing lobster_ai.egg-info/PKG-INFO 2026-01-08T13:19:09,823 writing dependency_links to lobster_ai.egg-info/dependency_links.txt 2026-01-08T13:19:09,825 writing entry points to lobster_ai.egg-info/entry_points.txt 2026-01-08T13:19:09,844 writing requirements to lobster_ai.egg-info/requires.txt 2026-01-08T13:19:09,845 writing top-level names to lobster_ai.egg-info/top_level.txt 2026-01-08T13:19:09,992 reading manifest file 'lobster_ai.egg-info/SOURCES.txt' 2026-01-08T13:19:10,008 adding license file 'LICENSE' 2026-01-08T13:19:10,022 writing manifest file 'lobster_ai.egg-info/SOURCES.txt' 2026-01-08T13:19:10,121 Getting requirements to build wheel: finished with status 'done' 2026-01-08T13:19:10,124 Created temporary directory: /tmp/pip-modern-metadata-3hv23ugh 2026-01-08T13:19:10,127 Preparing metadata (pyproject.toml): started 2026-01-08T13:19:10,128 Running command Preparing metadata (pyproject.toml) 2026-01-08T13:19:10,783 /tmp/pip-build-env-tody0q18/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `license` overwritten by `pyproject.toml` 2026-01-08T13:19:10,783 corresp(dist, value, root_dir) 2026-01-08T13:19:10,784 /tmp/pip-build-env-tody0q18/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2026-01-08T13:19:10,784 corresp(dist, value, root_dir) 2026-01-08T13:19:10,785 /tmp/pip-build-env-tody0q18/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `extras_require` overwritten in `pyproject.toml` (optional-dependencies) 2026-01-08T13:19:10,785 corresp(dist, value, root_dir) 2026-01-08T13:19:10,890 running dist_info 2026-01-08T13:19:10,903 creating /tmp/pip-modern-metadata-3hv23ugh/lobster_ai.egg-info 2026-01-08T13:19:10,904 writing /tmp/pip-modern-metadata-3hv23ugh/lobster_ai.egg-info/PKG-INFO 2026-01-08T13:19:10,935 writing dependency_links to /tmp/pip-modern-metadata-3hv23ugh/lobster_ai.egg-info/dependency_links.txt 2026-01-08T13:19:10,936 writing entry points to /tmp/pip-modern-metadata-3hv23ugh/lobster_ai.egg-info/entry_points.txt 2026-01-08T13:19:10,956 writing requirements to /tmp/pip-modern-metadata-3hv23ugh/lobster_ai.egg-info/requires.txt 2026-01-08T13:19:10,957 writing top-level names to /tmp/pip-modern-metadata-3hv23ugh/lobster_ai.egg-info/top_level.txt 2026-01-08T13:19:10,959 writing manifest file '/tmp/pip-modern-metadata-3hv23ugh/lobster_ai.egg-info/SOURCES.txt' 2026-01-08T13:19:11,098 reading manifest file '/tmp/pip-modern-metadata-3hv23ugh/lobster_ai.egg-info/SOURCES.txt' 2026-01-08T13:19:11,101 adding license file 'LICENSE' 2026-01-08T13:19:11,111 writing manifest file '/tmp/pip-modern-metadata-3hv23ugh/lobster_ai.egg-info/SOURCES.txt' 2026-01-08T13:19:11,113 creating '/tmp/pip-modern-metadata-3hv23ugh/lobster_ai-0.4.2.1.dist-info' 2026-01-08T13:19:11,244 Preparing metadata (pyproject.toml): finished with status 'done' 2026-01-08T13:19:11,251 Source in /tmp/pip-wheel-el_gor_3/lobster-ai_80c52e2a745c4e6cb1a8ac9b9afe73d8 has version 0.4.2.1, which satisfies requirement lobster-ai==0.4.2.1 from https://files.pythonhosted.org/packages/36/bc/3640189e266c68748b26bfdba01e65eb03e89c86a4dbabed94bc159e63cf/lobster_ai-0.4.2.1.tar.gz 2026-01-08T13:19:11,252 Removed lobster-ai==0.4.2.1 from https://files.pythonhosted.org/packages/36/bc/3640189e266c68748b26bfdba01e65eb03e89c86a4dbabed94bc159e63cf/lobster_ai-0.4.2.1.tar.gz from build tracker '/tmp/pip-build-tracker-vzf305i1' 2026-01-08T13:19:11,262 Created temporary directory: /tmp/pip-unpack-eljugh9b 2026-01-08T13:19:11,263 Building wheels for collected packages: lobster-ai 2026-01-08T13:19:11,268 Created temporary directory: /tmp/pip-wheel-joslen57 2026-01-08T13:19:11,268 Destination directory: /tmp/pip-wheel-joslen57 2026-01-08T13:19:11,270 Building wheel for lobster-ai (pyproject.toml): started 2026-01-08T13:19:11,272 Running command Building wheel for lobster-ai (pyproject.toml) 2026-01-08T13:19:11,888 /tmp/pip-build-env-tody0q18/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `license` overwritten by `pyproject.toml` 2026-01-08T13:19:11,889 corresp(dist, value, root_dir) 2026-01-08T13:19:11,889 /tmp/pip-build-env-tody0q18/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2026-01-08T13:19:11,890 corresp(dist, value, root_dir) 2026-01-08T13:19:11,890 /tmp/pip-build-env-tody0q18/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `extras_require` overwritten in `pyproject.toml` (optional-dependencies) 2026-01-08T13:19:11,891 corresp(dist, value, root_dir) 2026-01-08T13:19:11,981 running bdist_wheel 2026-01-08T13:19:12,002 running build 2026-01-08T13:19:12,002 running build_py 2026-01-08T13:19:12,009 creating build/lib/lobster 2026-01-08T13:19:12,011 copying lobster/version.py -> build/lib/lobster 2026-01-08T13:19:12,013 copying lobster/main.py -> build/lib/lobster 2026-01-08T13:19:12,015 copying lobster/__main__.py -> build/lib/lobster 2026-01-08T13:19:12,016 copying lobster/cli.py -> build/lib/lobster 2026-01-08T13:19:12,022 copying lobster/_version.py -> build/lib/lobster 2026-01-08T13:19:12,025 creating build/lib/lobster/cli_internal 2026-01-08T13:19:12,026 copying lobster/cli_internal/__init__.py -> build/lib/lobster/cli_internal 2026-01-08T13:19:12,028 creating build/lib/lobster/ui 2026-01-08T13:19:12,029 copying lobster/ui/__init__.py -> build/lib/lobster/ui 2026-01-08T13:19:12,031 copying lobster/ui/progress_manager.py -> build/lib/lobster/ui 2026-01-08T13:19:12,033 copying lobster/ui/commands.py -> build/lib/lobster/ui 2026-01-08T13:19:12,036 copying lobster/ui/themes.py -> build/lib/lobster/ui 2026-01-08T13:19:12,038 copying lobster/ui/os_app.py -> build/lib/lobster/ui 2026-01-08T13:19:12,040 copying lobster/ui/live_dashboard.py -> build/lib/lobster/ui 2026-01-08T13:19:12,043 copying lobster/ui/console_manager.py -> build/lib/lobster/ui 2026-01-08T13:19:12,046 creating build/lib/lobster/lobster_cloud 2026-01-08T13:19:12,047 copying lobster/lobster_cloud/__init__.py -> build/lib/lobster/lobster_cloud 2026-01-08T13:19:12,049 copying lobster/lobster_cloud/client.py -> build/lib/lobster/lobster_cloud 2026-01-08T13:19:12,052 creating build/lib/lobster/core 2026-01-08T13:19:12,054 copying lobster/core/plot_manager.py -> build/lib/lobster/core 2026-01-08T13:19:12,056 copying lobster/core/notebook_exporter.py -> build/lib/lobster/core 2026-01-08T13:19:12,059 copying lobster/core/publication_queue.py -> build/lib/lobster/core 2026-01-08T13:19:12,062 copying lobster/core/provenance.py -> build/lib/lobster/core 2026-01-08T13:19:12,065 copying lobster/core/plugin_loader.py -> build/lib/lobster/core 2026-01-08T13:19:12,067 copying lobster/core/download_queue.py -> build/lib/lobster/core 2026-01-08T13:19:12,070 copying lobster/core/archive_utils.py -> build/lib/lobster/core 2026-01-08T13:19:12,073 copying lobster/core/__init__.py -> build/lib/lobster/core 2026-01-08T13:19:12,075 copying lobster/core/ris_parser.py -> build/lib/lobster/core 2026-01-08T13:19:12,078 copying lobster/core/config_resolver.py -> build/lib/lobster/core 2026-01-08T13:19:12,081 copying lobster/core/ir_coverage.py -> build/lib/lobster/core 2026-01-08T13:19:12,083 copying lobster/core/notebook_validator.py -> build/lib/lobster/core 2026-01-08T13:19:12,086 copying lobster/core/queue_storage.py -> build/lib/lobster/core 2026-01-08T13:19:12,089 copying lobster/core/analysis_ir.py -> build/lib/lobster/core 2026-01-08T13:19:12,092 copying lobster/core/workspace.py -> build/lib/lobster/core 2026-01-08T13:19:12,094 copying lobster/core/notebook_executor.py -> build/lib/lobster/core 2026-01-08T13:19:12,097 copying lobster/core/exceptions.py -> build/lib/lobster/core 2026-01-08T13:19:12,100 copying lobster/core/client.py -> build/lib/lobster/core 2026-01-08T13:19:12,105 copying lobster/core/data_manager_v2.py -> build/lib/lobster/core 2026-01-08T13:19:12,110 copying lobster/core/component_registry.py -> build/lib/lobster/core 2026-01-08T13:19:12,113 copying lobster/core/license_manager.py -> build/lib/lobster/core 2026-01-08T13:19:12,117 creating build/lib/lobster/utils 2026-01-08T13:19:12,118 copying lobster/utils/file_analyzer.py -> build/lib/lobster/utils 2026-01-08T13:19:12,122 copying lobster/utils/__init__.py -> build/lib/lobster/utils 2026-01-08T13:19:12,124 copying lobster/utils/progress_wrapper.py -> build/lib/lobster/utils 2026-01-08T13:19:12,126 copying lobster/utils/ssl_utils.py -> build/lib/lobster/utils 2026-01-08T13:19:12,129 copying lobster/utils/deviance.py -> build/lib/lobster/utils 2026-01-08T13:19:12,131 copying lobster/utils/error_handlers.py -> build/lib/lobster/utils 2026-01-08T13:19:12,134 copying lobster/utils/system.py -> build/lib/lobster/utils 2026-01-08T13:19:12,137 copying lobster/utils/logger.py -> build/lib/lobster/utils 2026-01-08T13:19:12,139 copying lobster/utils/callbacks.py -> build/lib/lobster/utils 2026-01-08T13:19:12,143 copying lobster/utils/json_extractor.py -> build/lib/lobster/utils 2026-01-08T13:19:12,145 copying lobster/utils/file_naming.py -> build/lib/lobster/utils 2026-01-08T13:19:12,149 creating build/lib/lobster/config 2026-01-08T13:19:12,150 copying lobster/config/llm_factory.py -> build/lib/lobster/config 2026-01-08T13:19:12,153 copying lobster/config/supervisor_config.py -> build/lib/lobster/config 2026-01-08T13:19:12,156 copying lobster/config/constants.py -> build/lib/lobster/config 2026-01-08T13:19:12,158 copying lobster/config/config_manager.py -> build/lib/lobster/config 2026-01-08T13:19:12,161 copying lobster/config/__init__.py -> build/lib/lobster/config 2026-01-08T13:19:12,163 copying lobster/config/workspace_config.py -> build/lib/lobster/config 2026-01-08T13:19:12,166 copying lobster/config/provider_setup.py -> build/lib/lobster/config 2026-01-08T13:19:12,169 copying lobster/config/base_config.py -> build/lib/lobster/config 2026-01-08T13:19:12,171 copying lobster/config/agent_registry.py -> build/lib/lobster/config 2026-01-08T13:19:12,174 copying lobster/config/global_config.py -> build/lib/lobster/config 2026-01-08T13:19:12,176 copying lobster/config/model_service.py -> build/lib/lobster/config 2026-01-08T13:19:12,179 copying lobster/config/ssl_setup.py -> build/lib/lobster/config 2026-01-08T13:19:12,182 copying lobster/config/agent_config.py -> build/lib/lobster/config 2026-01-08T13:19:12,185 copying lobster/config/ollama_service.py -> build/lib/lobster/config 2026-01-08T13:19:12,188 copying lobster/config/agent_capabilities.py -> build/lib/lobster/config 2026-01-08T13:19:12,191 copying lobster/config/subscription_tiers.py -> build/lib/lobster/config 2026-01-08T13:19:12,194 copying lobster/config/settings.py -> build/lib/lobster/config 2026-01-08T13:19:12,198 creating build/lib/lobster/tools 2026-01-08T13:19:12,199 copying lobster/tools/__init__.py -> build/lib/lobster/tools 2026-01-08T13:19:12,202 copying lobster/tools/expert_handoff_manager.py -> build/lib/lobster/tools 2026-01-08T13:19:12,204 copying lobster/tools/geo_parser.py -> build/lib/lobster/tools 2026-01-08T13:19:12,207 copying lobster/tools/enhanced_handoff_tool.py -> build/lib/lobster/tools 2026-01-08T13:19:12,210 copying lobster/tools/url_transforms.py -> build/lib/lobster/tools 2026-01-08T13:19:12,212 copying lobster/tools/workspace_tool.py -> build/lib/lobster/tools 2026-01-08T13:19:12,217 copying lobster/tools/gpu_detector.py -> build/lib/lobster/tools 2026-01-08T13:19:12,220 copying lobster/tools/workflow_tracker.py -> build/lib/lobster/tools 2026-01-08T13:19:12,223 copying lobster/tools/handoff_tool.py -> build/lib/lobster/tools 2026-01-08T13:19:12,226 copying lobster/tools/download_orchestrator.py -> build/lib/lobster/tools 2026-01-08T13:19:12,229 copying lobster/tools/todo_tools.py -> build/lib/lobster/tools 2026-01-08T13:19:12,232 copying lobster/tools/custom_code_tool.py -> build/lib/lobster/tools 2026-01-08T13:19:12,235 copying lobster/tools/expert_handoff_patterns.py -> build/lib/lobster/tools 2026-01-08T13:19:12,237 copying lobster/tools/geo_downloader.py -> build/lib/lobster/tools 2026-01-08T13:19:12,240 copying lobster/tools/rate_limiter.py -> build/lib/lobster/tools 2026-01-08T13:19:12,243 copying lobster/tools/pipeline_strategy.py -> build/lib/lobster/tools 2026-01-08T13:19:12,246 creating build/lib/lobster/agents 2026-01-08T13:19:12,247 copying lobster/agents/supervisor.py -> build/lib/lobster/agents 2026-01-08T13:19:12,251 copying lobster/agents/visualization_expert.py -> build/lib/lobster/agents 2026-01-08T13:19:12,254 copying lobster/agents/__init__.py -> build/lib/lobster/agents 2026-01-08T13:19:12,255 copying lobster/agents/draw_graph.py -> build/lib/lobster/agents 2026-01-08T13:19:12,258 copying lobster/agents/data_expert.py -> build/lib/lobster/agents 2026-01-08T13:19:12,261 copying lobster/agents/research_agent.py -> build/lib/lobster/agents 2026-01-08T13:19:12,267 copying lobster/agents/data_expert_assistant.py -> build/lib/lobster/agents 2026-01-08T13:19:12,270 copying lobster/agents/state.py -> build/lib/lobster/agents 2026-01-08T13:19:12,273 copying lobster/agents/graph.py -> build/lib/lobster/agents 2026-01-08T13:19:12,276 creating build/lib/lobster/services 2026-01-08T13:19:12,278 copying lobster/services/__init__.py -> build/lib/lobster/services 2026-01-08T13:19:12,280 creating build/lib/lobster/cli_internal/commands 2026-01-08T13:19:12,281 copying lobster/cli_internal/commands/__init__.py -> build/lib/lobster/cli_internal/commands 2026-01-08T13:19:12,283 copying lobster/cli_internal/commands/output_adapter.py -> build/lib/lobster/cli_internal/commands 2026-01-08T13:19:12,286 creating build/lib/lobster/cli_internal/utils 2026-01-08T13:19:12,287 copying lobster/cli_internal/utils/path_resolution.py -> build/lib/lobster/cli_internal/utils 2026-01-08T13:19:12,289 copying lobster/cli_internal/utils/__init__.py -> build/lib/lobster/cli_internal/utils 2026-01-08T13:19:12,292 creating build/lib/lobster/cli_internal/commands/light 2026-01-08T13:19:12,293 copying lobster/cli_internal/commands/light/pipeline_commands.py -> build/lib/lobster/cli_internal/commands/light 2026-01-08T13:19:12,296 copying lobster/cli_internal/commands/light/workspace_commands.py -> build/lib/lobster/cli_internal/commands/light 2026-01-08T13:19:12,298 copying lobster/cli_internal/commands/light/__init__.py -> build/lib/lobster/cli_internal/commands/light 2026-01-08T13:19:12,300 copying lobster/cli_internal/commands/light/config_commands.py -> build/lib/lobster/cli_internal/commands/light 2026-01-08T13:19:12,303 copying lobster/cli_internal/commands/light/queue_commands.py -> build/lib/lobster/cli_internal/commands/light 2026-01-08T13:19:12,306 copying lobster/cli_internal/commands/light/file_commands.py -> build/lib/lobster/cli_internal/commands/light 2026-01-08T13:19:12,309 copying lobster/cli_internal/commands/light/metadata_commands.py -> build/lib/lobster/cli_internal/commands/light 2026-01-08T13:19:12,312 creating build/lib/lobster/cli_internal/commands/heavy 2026-01-08T13:19:12,313 copying lobster/cli_internal/commands/heavy/data_commands.py -> build/lib/lobster/cli_internal/commands/heavy 2026-01-08T13:19:12,315 copying lobster/cli_internal/commands/heavy/__init__.py -> build/lib/lobster/cli_internal/commands/heavy 2026-01-08T13:19:12,317 copying lobster/cli_internal/commands/heavy/modality_commands.py -> build/lib/lobster/cli_internal/commands/heavy 2026-01-08T13:19:12,320 copying lobster/cli_internal/commands/heavy/visualization_commands.py -> build/lib/lobster/cli_internal/commands/heavy 2026-01-08T13:19:12,323 creating build/lib/lobster/ui/components 2026-01-08T13:19:12,324 copying lobster/ui/components/__init__.py -> build/lib/lobster/ui/components 2026-01-08T13:19:12,326 copying lobster/ui/components/parallel_workers_progress.py -> build/lib/lobster/ui/components 2026-01-08T13:19:12,328 copying lobster/ui/components/multi_progress.py -> build/lib/lobster/ui/components 2026-01-08T13:19:12,331 copying lobster/ui/components/file_tree.py -> build/lib/lobster/ui/components 2026-01-08T13:19:12,334 copying lobster/ui/components/status_display.py -> build/lib/lobster/ui/components 2026-01-08T13:19:12,337 creating build/lib/lobster/ui/formatters 2026-01-08T13:19:12,338 copying lobster/ui/formatters/__init__.py -> build/lib/lobster/ui/formatters 2026-01-08T13:19:12,341 creating build/lib/lobster/ui/widgets 2026-01-08T13:19:12,342 copying lobster/ui/widgets/results_display.py -> build/lib/lobster/ui/widgets 2026-01-08T13:19:12,344 copying lobster/ui/widgets/modality_list.py -> build/lib/lobster/ui/widgets 2026-01-08T13:19:12,346 copying lobster/ui/widgets/queue_status_bar.py -> build/lib/lobster/ui/widgets 2026-01-08T13:19:12,348 copying lobster/ui/widgets/data_hub.py -> build/lib/lobster/ui/widgets 2026-01-08T13:19:12,350 copying lobster/ui/widgets/__init__.py -> build/lib/lobster/ui/widgets 2026-01-08T13:19:12,353 copying lobster/ui/widgets/query_prompt.py -> build/lib/lobster/ui/widgets 2026-01-08T13:19:12,355 copying lobster/ui/widgets/activity_log.py -> build/lib/lobster/ui/widgets 2026-01-08T13:19:12,357 copying lobster/ui/widgets/adapters_panel.py -> build/lib/lobster/ui/widgets 2026-01-08T13:19:12,359 copying lobster/ui/widgets/token_usage_panel.py -> build/lib/lobster/ui/widgets 2026-01-08T13:19:12,361 copying lobster/ui/widgets/system_info.py -> build/lib/lobster/ui/widgets 2026-01-08T13:19:12,364 copying lobster/ui/widgets/plot_preview.py -> build/lib/lobster/ui/widgets 2026-01-08T13:19:12,366 copying lobster/ui/widgets/connections_panel.py -> build/lib/lobster/ui/widgets 2026-01-08T13:19:12,368 copying lobster/ui/widgets/status_bar.py -> build/lib/lobster/ui/widgets 2026-01-08T13:19:12,370 copying lobster/ui/widgets/chat_message.py -> build/lib/lobster/ui/widgets 2026-01-08T13:19:12,372 copying lobster/ui/widgets/agents_panel.py -> build/lib/lobster/ui/widgets 2026-01-08T13:19:12,374 copying lobster/ui/widgets/error_modal.py -> build/lib/lobster/ui/widgets 2026-01-08T13:19:12,377 copying lobster/ui/widgets/queue_panel.py -> build/lib/lobster/ui/widgets 2026-01-08T13:19:12,380 creating build/lib/lobster/ui/callbacks 2026-01-08T13:19:12,381 copying lobster/ui/callbacks/textual_callback.py -> build/lib/lobster/ui/callbacks 2026-01-08T13:19:12,384 copying lobster/ui/callbacks/__init__.py -> build/lib/lobster/ui/callbacks 2026-01-08T13:19:12,386 creating build/lib/lobster/ui/services 2026-01-08T13:19:12,387 copying lobster/ui/services/__init__.py -> build/lib/lobster/ui/services 2026-01-08T13:19:12,389 copying lobster/ui/services/error_service.py -> build/lib/lobster/ui/services 2026-01-08T13:19:12,392 creating build/lib/lobster/ui/screens 2026-01-08T13:19:12,393 copying lobster/ui/screens/analysis_screen.py -> build/lib/lobster/ui/screens 2026-01-08T13:19:12,396 copying lobster/ui/screens/__init__.py -> build/lib/lobster/ui/screens 2026-01-08T13:19:12,399 creating build/lib/lobster/core/interfaces 2026-01-08T13:19:12,400 copying lobster/core/interfaces/backend.py -> build/lib/lobster/core/interfaces 2026-01-08T13:19:12,402 copying lobster/core/interfaces/__init__.py -> build/lib/lobster/core/interfaces 2026-01-08T13:19:12,404 copying lobster/core/interfaces/download_service.py -> build/lib/lobster/core/interfaces 2026-01-08T13:19:12,407 copying lobster/core/interfaces/validator.py -> build/lib/lobster/core/interfaces 2026-01-08T13:19:12,409 copying lobster/core/interfaces/base_client.py -> build/lib/lobster/core/interfaces 2026-01-08T13:19:12,412 copying lobster/core/interfaces/adapter.py -> build/lib/lobster/core/interfaces 2026-01-08T13:19:12,415 creating build/lib/lobster/core/identifiers 2026-01-08T13:19:12,416 copying lobster/core/identifiers/accession_resolver.py -> build/lib/lobster/core/identifiers 2026-01-08T13:19:12,418 copying lobster/core/identifiers/__init__.py -> build/lib/lobster/core/identifiers 2026-01-08T13:19:12,421 creating build/lib/lobster/core/utils 2026-01-08T13:19:12,422 copying lobster/core/utils/__init__.py -> build/lib/lobster/core/utils 2026-01-08T13:19:12,424 copying lobster/core/utils/h5ad_utils.py -> build/lib/lobster/core/utils 2026-01-08T13:19:12,427 creating build/lib/lobster/core/backends 2026-01-08T13:19:12,428 copying lobster/core/backends/mudata_backend.py -> build/lib/lobster/core/backends 2026-01-08T13:19:12,431 copying lobster/core/backends/__init__.py -> build/lib/lobster/core/backends 2026-01-08T13:19:12,432 copying lobster/core/backends/h5ad_backend.py -> build/lib/lobster/core/backends 2026-01-08T13:19:12,435 copying lobster/core/backends/base.py -> build/lib/lobster/core/backends 2026-01-08T13:19:12,438 creating build/lib/lobster/core/schemas 2026-01-08T13:19:12,439 copying lobster/core/schemas/metagenomics.py -> build/lib/lobster/core/schemas 2026-01-08T13:19:12,442 copying lobster/core/schemas/proteomics.py -> build/lib/lobster/core/schemas 2026-01-08T13:19:12,445 copying lobster/core/schemas/publication_queue.py -> build/lib/lobster/core/schemas 2026-01-08T13:19:12,447 copying lobster/core/schemas/export_schemas.py -> build/lib/lobster/core/schemas 2026-01-08T13:19:12,450 copying lobster/core/schemas/download_queue.py -> build/lib/lobster/core/schemas 2026-01-08T13:19:12,453 copying lobster/core/schemas/__init__.py -> build/lib/lobster/core/schemas 2026-01-08T13:19:12,455 copying lobster/core/schemas/transcriptomics.py -> build/lib/lobster/core/schemas 2026-01-08T13:19:12,458 copying lobster/core/schemas/metabolomics.py -> build/lib/lobster/core/schemas 2026-01-08T13:19:12,461 copying lobster/core/schemas/validation.py -> build/lib/lobster/core/schemas 2026-01-08T13:19:12,463 copying lobster/core/schemas/database_mappings.py -> build/lib/lobster/core/schemas 2026-01-08T13:19:12,466 copying lobster/core/schemas/database_registry.py -> build/lib/lobster/core/schemas 2026-01-08T13:19:12,468 copying lobster/core/schemas/sra.py -> build/lib/lobster/core/schemas 2026-01-08T13:19:12,471 copying lobster/core/schemas/protein_structure.py -> build/lib/lobster/core/schemas 2026-01-08T13:19:12,474 copying lobster/core/schemas/download_urls.py -> build/lib/lobster/core/schemas 2026-01-08T13:19:12,477 creating build/lib/lobster/core/adapters 2026-01-08T13:19:12,478 copying lobster/core/adapters/protein_structure_adapter.py -> build/lib/lobster/core/adapters 2026-01-08T13:19:12,481 copying lobster/core/adapters/__init__.py -> build/lib/lobster/core/adapters 2026-01-08T13:19:12,483 copying lobster/core/adapters/proteomics_adapter.py -> build/lib/lobster/core/adapters 2026-01-08T13:19:12,486 copying lobster/core/adapters/transcriptomics_adapter.py -> build/lib/lobster/core/adapters 2026-01-08T13:19:12,488 copying lobster/core/adapters/base.py -> build/lib/lobster/core/adapters 2026-01-08T13:19:12,491 copying lobster/core/adapters/pseudobulk_adapter.py -> build/lib/lobster/core/adapters 2026-01-08T13:19:12,494 creating build/lib/lobster/config/providers 2026-01-08T13:19:12,495 copying lobster/config/providers/__init__.py -> build/lib/lobster/config/providers 2026-01-08T13:19:12,498 copying lobster/config/providers/base_provider.py -> build/lib/lobster/config/providers 2026-01-08T13:19:12,500 copying lobster/config/providers/gemini_provider.py -> build/lib/lobster/config/providers 2026-01-08T13:19:12,502 copying lobster/config/providers/bedrock_provider.py -> build/lib/lobster/config/providers 2026-01-08T13:19:12,505 copying lobster/config/providers/anthropic_provider.py -> build/lib/lobster/config/providers 2026-01-08T13:19:12,507 copying lobster/config/providers/ollama_provider.py -> build/lib/lobster/config/providers 2026-01-08T13:19:12,510 copying lobster/config/providers/registry.py -> build/lib/lobster/config/providers 2026-01-08T13:19:12,513 creating build/lib/lobster/tools/archive 2026-01-08T13:19:12,514 copying lobster/tools/archive/publication_service.py -> build/lib/lobster/tools/archive 2026-01-08T13:19:12,516 copying lobster/tools/archive/unified_content_service.py -> build/lib/lobster/tools/archive 2026-01-08T13:19:12,520 creating build/lib/lobster/tools/providers 2026-01-08T13:19:12,521 copying lobster/tools/providers/pride_provider.py -> build/lib/lobster/tools/providers 2026-01-08T13:19:12,524 copying lobster/tools/providers/geo_utils.py -> build/lib/lobster/tools/providers 2026-01-08T13:19:12,526 copying lobster/tools/providers/pubmed_provider.py -> build/lib/lobster/tools/providers 2026-01-08T13:19:12,531 copying lobster/tools/providers/biopython_entrez_wrapper.py -> build/lib/lobster/tools/providers 2026-01-08T13:19:12,533 copying lobster/tools/providers/__init__.py -> build/lib/lobster/tools/providers 2026-01-08T13:19:12,535 copying lobster/tools/providers/pmc_provider.py -> build/lib/lobster/tools/providers 2026-01-08T13:19:12,538 copying lobster/tools/providers/base_provider.py -> build/lib/lobster/tools/providers 2026-01-08T13:19:12,541 copying lobster/tools/providers/provider_registry.py -> build/lib/lobster/tools/providers 2026-01-08T13:19:12,543 copying lobster/tools/providers/structure_provider.py -> build/lib/lobster/tools/providers 2026-01-08T13:19:12,546 copying lobster/tools/providers/webpage_provider.py -> build/lib/lobster/tools/providers 2026-01-08T13:19:12,548 copying lobster/tools/providers/sra_provider.py -> build/lib/lobster/tools/providers 2026-01-08T13:19:12,552 copying lobster/tools/providers/pride_normalizer.py -> build/lib/lobster/tools/providers 2026-01-08T13:19:12,554 copying lobster/tools/providers/organism_enum.py -> build/lib/lobster/tools/providers 2026-01-08T13:19:12,557 copying lobster/tools/providers/massive_provider.py -> build/lib/lobster/tools/providers 2026-01-08T13:19:12,559 copying lobster/tools/providers/biorxiv_medrxiv_config.py -> build/lib/lobster/tools/providers 2026-01-08T13:19:12,561 copying lobster/tools/providers/publication_resolver.py -> build/lib/lobster/tools/providers 2026-01-08T13:19:12,564 copying lobster/tools/providers/geo_provider.py -> build/lib/lobster/tools/providers 2026-01-08T13:19:12,568 copying lobster/tools/providers/biorxiv_medrxiv_provider.py -> build/lib/lobster/tools/providers 2026-01-08T13:19:12,571 copying lobster/tools/providers/abstract_provider.py -> build/lib/lobster/tools/providers 2026-01-08T13:19:12,573 copying lobster/tools/providers/ncbi_query_builder.py -> build/lib/lobster/tools/providers 2026-01-08T13:19:12,576 copying lobster/tools/providers/pdb_provider.py -> build/lib/lobster/tools/providers 2026-01-08T13:19:12,579 creating build/lib/lobster/agents/archive 2026-01-08T13:19:12,580 copying lobster/agents/archive/research_agent_assistant.py -> build/lib/lobster/agents/archive 2026-01-08T13:19:12,584 creating build/lib/lobster/agents/langgraph_supervisor 2026-01-08T13:19:12,585 copying lobster/agents/langgraph_supervisor/supervisor.py -> build/lib/lobster/agents/langgraph_supervisor 2026-01-08T13:19:12,587 copying lobster/agents/langgraph_supervisor/__init__.py -> build/lib/lobster/agents/langgraph_supervisor 2026-01-08T13:19:12,590 copying lobster/agents/langgraph_supervisor/agent_name.py -> build/lib/lobster/agents/langgraph_supervisor 2026-01-08T13:19:12,592 copying lobster/agents/langgraph_supervisor/handoff.py -> build/lib/lobster/agents/langgraph_supervisor 2026-01-08T13:19:12,595 creating build/lib/lobster/agents/transcriptomics 2026-01-08T13:19:12,596 copying lobster/agents/transcriptomics/__init__.py -> build/lib/lobster/agents/transcriptomics 2026-01-08T13:19:12,598 copying lobster/agents/transcriptomics/transcriptomics_expert.py -> build/lib/lobster/agents/transcriptomics 2026-01-08T13:19:12,601 copying lobster/agents/transcriptomics/state.py -> build/lib/lobster/agents/transcriptomics 2026-01-08T13:19:12,603 copying lobster/agents/transcriptomics/shared_tools.py -> build/lib/lobster/agents/transcriptomics 2026-01-08T13:19:12,606 copying lobster/agents/transcriptomics/annotation_expert.py -> build/lib/lobster/agents/transcriptomics 2026-01-08T13:19:12,610 copying lobster/agents/transcriptomics/de_analysis_expert.py -> build/lib/lobster/agents/transcriptomics 2026-01-08T13:19:12,614 creating build/lib/lobster/agents/proteomics 2026-01-08T13:19:12,615 copying lobster/agents/proteomics/__init__.py -> build/lib/lobster/agents/proteomics 2026-01-08T13:19:12,617 copying lobster/agents/proteomics/state.py -> build/lib/lobster/agents/proteomics 2026-01-08T13:19:12,620 creating build/lib/lobster/services/templates 2026-01-08T13:19:12,621 copying lobster/services/templates/__init__.py -> build/lib/lobster/services/templates 2026-01-08T13:19:12,622 copying lobster/services/templates/annotation_templates.py -> build/lib/lobster/services/templates 2026-01-08T13:19:12,626 creating build/lib/lobster/services/execution 2026-01-08T13:19:12,627 copying lobster/services/execution/__init__.py -> build/lib/lobster/services/execution 2026-01-08T13:19:12,629 copying lobster/services/execution/execution_context_builder.py -> build/lib/lobster/services/execution 2026-01-08T13:19:12,631 copying lobster/services/execution/custom_code_execution_service.py -> build/lib/lobster/services/execution 2026-01-08T13:19:12,634 creating build/lib/lobster/services/metadata 2026-01-08T13:19:12,635 copying lobster/services/metadata/manual_annotation_service.py -> build/lib/lobster/services/metadata 2026-01-08T13:19:12,638 copying lobster/services/metadata/__init__.py -> build/lib/lobster/services/metadata 2026-01-08T13:19:12,640 copying lobster/services/metadata/identifier_provenance_service.py -> build/lib/lobster/services/metadata 2026-01-08T13:19:12,642 copying lobster/services/metadata/sample_grouping_service.py -> build/lib/lobster/services/metadata 2026-01-08T13:19:12,645 copying lobster/services/metadata/metadata_standardization_service.py -> build/lib/lobster/services/metadata 2026-01-08T13:19:12,647 copying lobster/services/metadata/metadata_validation_service.py -> build/lib/lobster/services/metadata 2026-01-08T13:19:12,651 creating build/lib/lobster/services/analysis 2026-01-08T13:19:12,652 copying lobster/services/analysis/scvi_embedding_service.py -> build/lib/lobster/services/analysis 2026-01-08T13:19:12,654 copying lobster/services/analysis/__init__.py -> build/lib/lobster/services/analysis 2026-01-08T13:19:12,656 copying lobster/services/analysis/enhanced_singlecell_service.py -> build/lib/lobster/services/analysis 2026-01-08T13:19:12,661 copying lobster/services/analysis/clustering_service.py -> build/lib/lobster/services/analysis 2026-01-08T13:19:12,667 copying lobster/services/analysis/structure_analysis_service.py -> build/lib/lobster/services/analysis 2026-01-08T13:19:12,670 copying lobster/services/analysis/differential_formula_service.py -> build/lib/lobster/services/analysis 2026-01-08T13:19:12,674 copying lobster/services/analysis/bulk_rnaseq_service.py -> build/lib/lobster/services/analysis 2026-01-08T13:19:12,680 copying lobster/services/analysis/pseudobulk_service.py -> build/lib/lobster/services/analysis 2026-01-08T13:19:12,684 creating build/lib/lobster/services/ml 2026-01-08T13:19:12,685 copying lobster/services/ml/__init__.py -> build/lib/lobster/services/ml 2026-01-08T13:19:12,688 creating build/lib/lobster/services/data_management 2026-01-08T13:19:12,690 copying lobster/services/data_management/__init__.py -> build/lib/lobster/services/data_management 2026-01-08T13:19:12,692 copying lobster/services/data_management/modality_management_service.py -> build/lib/lobster/services/data_management 2026-01-08T13:19:12,695 copying lobster/services/data_management/concatenation_service.py -> build/lib/lobster/services/data_management 2026-01-08T13:19:12,700 creating build/lib/lobster/services/quality 2026-01-08T13:19:12,702 copying lobster/services/quality/quality_service.py -> build/lib/lobster/services/quality 2026-01-08T13:19:12,705 copying lobster/services/quality/__init__.py -> build/lib/lobster/services/quality 2026-01-08T13:19:12,707 copying lobster/services/quality/preprocessing_service.py -> build/lib/lobster/services/quality 2026-01-08T13:19:12,712 creating build/lib/lobster/services/data_access 2026-01-08T13:19:12,714 copying lobster/services/data_access/pride_download_service.py -> build/lib/lobster/services/data_access 2026-01-08T13:19:12,717 copying lobster/services/data_access/__init__.py -> build/lib/lobster/services/data_access 2026-01-08T13:19:12,719 copying lobster/services/data_access/sra_download_service.py -> build/lib/lobster/services/data_access 2026-01-08T13:19:12,723 copying lobster/services/data_access/docling_service.py -> build/lib/lobster/services/data_access 2026-01-08T13:19:12,727 copying lobster/services/data_access/massive_download_service.py -> build/lib/lobster/services/data_access 2026-01-08T13:19:12,730 copying lobster/services/data_access/protein_structure_fetch_service.py -> build/lib/lobster/services/data_access 2026-01-08T13:19:12,733 copying lobster/services/data_access/workspace_content_service.py -> build/lib/lobster/services/data_access 2026-01-08T13:19:12,737 copying lobster/services/data_access/geo_download_service.py -> build/lib/lobster/services/data_access 2026-01-08T13:19:12,740 copying lobster/services/data_access/content_access_service.py -> build/lib/lobster/services/data_access 2026-01-08T13:19:12,745 copying lobster/services/data_access/geo_fallback_service.py -> build/lib/lobster/services/data_access 2026-01-08T13:19:12,749 copying lobster/services/data_access/geo_service.py -> build/lib/lobster/services/data_access 2026-01-08T13:19:12,760 creating build/lib/lobster/services/orchestration 2026-01-08T13:19:12,761 copying lobster/services/orchestration/__init__.py -> build/lib/lobster/services/orchestration 2026-01-08T13:19:12,763 copying lobster/services/orchestration/publication_processing_service.py -> build/lib/lobster/services/orchestration 2026-01-08T13:19:12,767 creating build/lib/lobster/services/visualization 2026-01-08T13:19:12,768 copying lobster/services/visualization/bulk_visualization_service.py -> build/lib/lobster/services/visualization 2026-01-08T13:19:12,771 copying lobster/services/visualization/pymol_visualization_service.py -> build/lib/lobster/services/visualization 2026-01-08T13:19:12,774 copying lobster/services/visualization/__init__.py -> build/lib/lobster/services/visualization 2026-01-08T13:19:12,775 copying lobster/services/visualization/visualization_service.py -> build/lib/lobster/services/visualization 2026-01-08T13:19:12,779 creating build/lib/lobster/services/metadata/protocol_extraction 2026-01-08T13:19:12,780 copying lobster/services/metadata/protocol_extraction/__init__.py -> build/lib/lobster/services/metadata/protocol_extraction 2026-01-08T13:19:12,783 copying lobster/services/metadata/protocol_extraction/base.py -> build/lib/lobster/services/metadata/protocol_extraction 2026-01-08T13:19:12,785 creating build/lib/lobster/services/metadata/protocol_extraction/mass_spec 2026-01-08T13:19:12,786 copying lobster/services/metadata/protocol_extraction/mass_spec/__init__.py -> build/lib/lobster/services/metadata/protocol_extraction/mass_spec 2026-01-08T13:19:12,789 copying lobster/services/metadata/protocol_extraction/mass_spec/details.py -> build/lib/lobster/services/metadata/protocol_extraction/mass_spec 2026-01-08T13:19:12,791 copying lobster/services/metadata/protocol_extraction/mass_spec/service.py -> build/lib/lobster/services/metadata/protocol_extraction/mass_spec 2026-01-08T13:19:12,793 creating build/lib/lobster/services/metadata/protocol_extraction/rnaseq 2026-01-08T13:19:12,794 copying lobster/services/metadata/protocol_extraction/rnaseq/__init__.py -> build/lib/lobster/services/metadata/protocol_extraction/rnaseq 2026-01-08T13:19:12,796 copying lobster/services/metadata/protocol_extraction/rnaseq/details.py -> build/lib/lobster/services/metadata/protocol_extraction/rnaseq 2026-01-08T13:19:12,798 copying lobster/services/metadata/protocol_extraction/rnaseq/service.py -> build/lib/lobster/services/metadata/protocol_extraction/rnaseq 2026-01-08T13:19:12,801 creating build/lib/lobster/services/metadata/protocol_extraction/amplicon 2026-01-08T13:19:12,802 copying lobster/services/metadata/protocol_extraction/amplicon/__init__.py -> build/lib/lobster/services/metadata/protocol_extraction/amplicon 2026-01-08T13:19:12,804 copying lobster/services/metadata/protocol_extraction/amplicon/details.py -> build/lib/lobster/services/metadata/protocol_extraction/amplicon 2026-01-08T13:19:12,806 copying lobster/services/metadata/protocol_extraction/amplicon/service.py -> build/lib/lobster/services/metadata/protocol_extraction/amplicon 2026-01-08T13:19:12,810 creating build/lib/lobster/services/data_access/geo 2026-01-08T13:19:12,811 copying lobster/services/data_access/geo/constants.py -> build/lib/lobster/services/data_access/geo 2026-01-08T13:19:12,813 copying lobster/services/data_access/geo/downloader.py -> build/lib/lobster/services/data_access/geo 2026-01-08T13:19:12,816 copying lobster/services/data_access/geo/__init__.py -> build/lib/lobster/services/data_access/geo 2026-01-08T13:19:12,818 copying lobster/services/data_access/geo/facade.py -> build/lib/lobster/services/data_access/geo 2026-01-08T13:19:12,820 copying lobster/services/data_access/geo/strategy.py -> build/lib/lobster/services/data_access/geo 2026-01-08T13:19:12,822 copying lobster/services/data_access/geo/parser.py -> build/lib/lobster/services/data_access/geo 2026-01-08T13:19:12,826 creating build/lib/lobster/services/data_access/geo/sample 2026-01-08T13:19:12,827 copying lobster/services/data_access/geo/sample/__init__.py -> build/lib/lobster/services/data_access/geo/sample 2026-01-08T13:19:12,829 creating build/lib/lobster/services/data_access/geo/metadata 2026-01-08T13:19:12,830 copying lobster/services/data_access/geo/metadata/__init__.py -> build/lib/lobster/services/data_access/geo/metadata 2026-01-08T13:19:12,833 creating build/lib/lobster/services/data_access/geo/loaders 2026-01-08T13:19:12,834 copying lobster/services/data_access/geo/loaders/__init__.py -> build/lib/lobster/services/data_access/geo/loaders 2026-01-08T13:19:12,836 copying lobster/services/data_access/geo/loaders/tenx.py -> build/lib/lobster/services/data_access/geo/loaders 2026-01-08T13:19:12,839 creating build/lib/lobster/services/data_access/geo/utils 2026-01-08T13:19:12,840 copying lobster/services/data_access/geo/utils/__init__.py -> build/lib/lobster/services/data_access/geo/utils 2026-01-08T13:19:12,842 running egg_info 2026-01-08T13:19:12,853 writing lobster_ai.egg-info/PKG-INFO 2026-01-08T13:19:12,883 writing dependency_links to lobster_ai.egg-info/dependency_links.txt 2026-01-08T13:19:12,885 writing entry points to lobster_ai.egg-info/entry_points.txt 2026-01-08T13:19:12,904 writing requirements to lobster_ai.egg-info/requires.txt 2026-01-08T13:19:12,905 writing top-level names to lobster_ai.egg-info/top_level.txt 2026-01-08T13:19:13,027 reading manifest file 'lobster_ai.egg-info/SOURCES.txt' 2026-01-08T13:19:13,043 adding license file 'LICENSE' 2026-01-08T13:19:13,057 writing manifest file 'lobster_ai.egg-info/SOURCES.txt' 2026-01-08T13:19:13,148 creating build/lib/lobster/services/metadata/protocol_extraction/amplicon/resources 2026-01-08T13:19:13,149 copying lobster/services/metadata/protocol_extraction/amplicon/resources/primers.json -> build/lib/lobster/services/metadata/protocol_extraction/amplicon/resources 2026-01-08T13:19:13,186 installing to build/bdist.linux-armv7l/wheel 2026-01-08T13:19:13,187 running install 2026-01-08T13:19:13,209 running install_lib 2026-01-08T13:19:13,215 creating build/bdist.linux-armv7l/wheel 2026-01-08T13:19:13,218 creating build/bdist.linux-armv7l/wheel/lobster 2026-01-08T13:19:13,219 creating build/bdist.linux-armv7l/wheel/lobster/cli_internal 2026-01-08T13:19:13,221 copying build/lib/lobster/cli_internal/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal 2026-01-08T13:19:13,223 creating build/bdist.linux-armv7l/wheel/lobster/cli_internal/commands 2026-01-08T13:19:13,224 copying build/lib/lobster/cli_internal/commands/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands 2026-01-08T13:19:13,227 creating build/bdist.linux-armv7l/wheel/lobster/cli_internal/commands/light 2026-01-08T13:19:13,228 copying build/lib/lobster/cli_internal/commands/light/pipeline_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light 2026-01-08T13:19:13,231 copying build/lib/lobster/cli_internal/commands/light/workspace_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light 2026-01-08T13:19:13,234 copying build/lib/lobster/cli_internal/commands/light/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light 2026-01-08T13:19:13,236 copying build/lib/lobster/cli_internal/commands/light/config_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light 2026-01-08T13:19:13,238 copying build/lib/lobster/cli_internal/commands/light/queue_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light 2026-01-08T13:19:13,241 copying build/lib/lobster/cli_internal/commands/light/file_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light 2026-01-08T13:19:13,244 copying build/lib/lobster/cli_internal/commands/light/metadata_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light 2026-01-08T13:19:13,246 copying build/lib/lobster/cli_internal/commands/output_adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands 2026-01-08T13:19:13,249 creating build/bdist.linux-armv7l/wheel/lobster/cli_internal/commands/heavy 2026-01-08T13:19:13,250 copying build/lib/lobster/cli_internal/commands/heavy/data_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/heavy 2026-01-08T13:19:13,253 copying build/lib/lobster/cli_internal/commands/heavy/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/heavy 2026-01-08T13:19:13,255 copying build/lib/lobster/cli_internal/commands/heavy/modality_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/heavy 2026-01-08T13:19:13,257 copying build/lib/lobster/cli_internal/commands/heavy/visualization_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/heavy 2026-01-08T13:19:13,260 creating build/bdist.linux-armv7l/wheel/lobster/cli_internal/utils 2026-01-08T13:19:13,261 copying build/lib/lobster/cli_internal/utils/path_resolution.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/utils 2026-01-08T13:19:13,264 copying build/lib/lobster/cli_internal/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/utils 2026-01-08T13:19:13,266 copying build/lib/lobster/version.py -> build/bdist.linux-armv7l/wheel/./lobster 2026-01-08T13:19:13,268 creating build/bdist.linux-armv7l/wheel/lobster/ui 2026-01-08T13:19:13,269 copying build/lib/lobster/ui/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui 2026-01-08T13:19:13,272 creating build/bdist.linux-armv7l/wheel/lobster/ui/components 2026-01-08T13:19:13,273 copying build/lib/lobster/ui/components/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/components 2026-01-08T13:19:13,275 copying build/lib/lobster/ui/components/parallel_workers_progress.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/components 2026-01-08T13:19:13,278 copying build/lib/lobster/ui/components/multi_progress.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/components 2026-01-08T13:19:13,281 copying build/lib/lobster/ui/components/file_tree.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/components 2026-01-08T13:19:13,283 copying build/lib/lobster/ui/components/status_display.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/components 2026-01-08T13:19:13,286 creating build/bdist.linux-armv7l/wheel/lobster/ui/formatters 2026-01-08T13:19:13,288 copying build/lib/lobster/ui/formatters/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/formatters 2026-01-08T13:19:13,290 copying build/lib/lobster/ui/progress_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/ui 2026-01-08T13:19:13,293 creating build/bdist.linux-armv7l/wheel/lobster/ui/widgets 2026-01-08T13:19:13,294 copying build/lib/lobster/ui/widgets/results_display.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-08T13:19:13,296 copying build/lib/lobster/ui/widgets/modality_list.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-08T13:19:13,298 copying build/lib/lobster/ui/widgets/queue_status_bar.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-08T13:19:13,300 copying build/lib/lobster/ui/widgets/data_hub.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-08T13:19:13,303 copying build/lib/lobster/ui/widgets/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-08T13:19:13,305 copying build/lib/lobster/ui/widgets/query_prompt.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-08T13:19:13,307 copying build/lib/lobster/ui/widgets/activity_log.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-08T13:19:13,309 copying build/lib/lobster/ui/widgets/adapters_panel.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-08T13:19:13,311 copying build/lib/lobster/ui/widgets/token_usage_panel.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-08T13:19:13,313 copying build/lib/lobster/ui/widgets/system_info.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-08T13:19:13,316 copying build/lib/lobster/ui/widgets/plot_preview.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-08T13:19:13,318 copying build/lib/lobster/ui/widgets/connections_panel.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-08T13:19:13,320 copying build/lib/lobster/ui/widgets/status_bar.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-08T13:19:13,322 copying build/lib/lobster/ui/widgets/chat_message.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-08T13:19:13,324 copying build/lib/lobster/ui/widgets/agents_panel.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-08T13:19:13,326 copying build/lib/lobster/ui/widgets/error_modal.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-08T13:19:13,329 copying build/lib/lobster/ui/widgets/queue_panel.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-08T13:19:13,331 copying build/lib/lobster/ui/commands.py -> build/bdist.linux-armv7l/wheel/./lobster/ui 2026-01-08T13:19:13,334 copying build/lib/lobster/ui/themes.py -> build/bdist.linux-armv7l/wheel/./lobster/ui 2026-01-08T13:19:13,336 copying build/lib/lobster/ui/os_app.py -> build/bdist.linux-armv7l/wheel/./lobster/ui 2026-01-08T13:19:13,338 creating build/bdist.linux-armv7l/wheel/lobster/ui/callbacks 2026-01-08T13:19:13,339 copying build/lib/lobster/ui/callbacks/textual_callback.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/callbacks 2026-01-08T13:19:13,342 copying build/lib/lobster/ui/callbacks/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/callbacks 2026-01-08T13:19:13,344 copying build/lib/lobster/ui/live_dashboard.py -> build/bdist.linux-armv7l/wheel/./lobster/ui 2026-01-08T13:19:13,347 creating build/bdist.linux-armv7l/wheel/lobster/ui/services 2026-01-08T13:19:13,348 copying build/lib/lobster/ui/services/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/services 2026-01-08T13:19:13,350 copying build/lib/lobster/ui/services/error_service.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/services 2026-01-08T13:19:13,352 copying build/lib/lobster/ui/console_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/ui 2026-01-08T13:19:13,355 creating build/bdist.linux-armv7l/wheel/lobster/ui/screens 2026-01-08T13:19:13,356 copying build/lib/lobster/ui/screens/analysis_screen.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/screens 2026-01-08T13:19:13,359 copying build/lib/lobster/ui/screens/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/screens 2026-01-08T13:19:13,361 copying build/lib/lobster/main.py -> build/bdist.linux-armv7l/wheel/./lobster 2026-01-08T13:19:13,363 copying build/lib/lobster/__main__.py -> build/bdist.linux-armv7l/wheel/./lobster 2026-01-08T13:19:13,364 copying build/lib/lobster/cli.py -> build/bdist.linux-armv7l/wheel/./lobster 2026-01-08T13:19:13,371 creating build/bdist.linux-armv7l/wheel/lobster/lobster_cloud 2026-01-08T13:19:13,372 copying build/lib/lobster/lobster_cloud/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/lobster_cloud 2026-01-08T13:19:13,374 copying build/lib/lobster/lobster_cloud/client.py -> build/bdist.linux-armv7l/wheel/./lobster/lobster_cloud 2026-01-08T13:19:13,377 creating build/bdist.linux-armv7l/wheel/lobster/core 2026-01-08T13:19:13,378 copying build/lib/lobster/core/plot_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-08T13:19:13,381 copying build/lib/lobster/core/notebook_exporter.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-08T13:19:13,383 copying build/lib/lobster/core/publication_queue.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-08T13:19:13,386 copying build/lib/lobster/core/provenance.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-08T13:19:13,388 copying build/lib/lobster/core/plugin_loader.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-08T13:19:13,390 copying build/lib/lobster/core/download_queue.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-08T13:19:13,393 copying build/lib/lobster/core/archive_utils.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-08T13:19:13,395 copying build/lib/lobster/core/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-08T13:19:13,397 creating build/bdist.linux-armv7l/wheel/lobster/core/interfaces 2026-01-08T13:19:13,398 copying build/lib/lobster/core/interfaces/backend.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces 2026-01-08T13:19:13,401 copying build/lib/lobster/core/interfaces/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces 2026-01-08T13:19:13,402 copying build/lib/lobster/core/interfaces/download_service.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces 2026-01-08T13:19:13,405 copying build/lib/lobster/core/interfaces/validator.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces 2026-01-08T13:19:13,407 copying build/lib/lobster/core/interfaces/base_client.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces 2026-01-08T13:19:13,409 copying build/lib/lobster/core/interfaces/adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces 2026-01-08T13:19:13,412 copying build/lib/lobster/core/ris_parser.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-08T13:19:13,414 copying build/lib/lobster/core/config_resolver.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-08T13:19:13,417 copying build/lib/lobster/core/ir_coverage.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-08T13:19:13,419 copying build/lib/lobster/core/notebook_validator.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-08T13:19:13,421 copying build/lib/lobster/core/queue_storage.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-08T13:19:13,423 copying build/lib/lobster/core/analysis_ir.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-08T13:19:13,426 copying build/lib/lobster/core/workspace.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-08T13:19:13,428 copying build/lib/lobster/core/notebook_executor.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-08T13:19:13,431 creating build/bdist.linux-armv7l/wheel/lobster/core/identifiers 2026-01-08T13:19:13,432 copying build/lib/lobster/core/identifiers/accession_resolver.py -> build/bdist.linux-armv7l/wheel/./lobster/core/identifiers 2026-01-08T13:19:13,435 copying build/lib/lobster/core/identifiers/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/identifiers 2026-01-08T13:19:13,437 copying build/lib/lobster/core/exceptions.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-08T13:19:13,440 creating build/bdist.linux-armv7l/wheel/lobster/core/utils 2026-01-08T13:19:13,441 copying build/lib/lobster/core/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/utils 2026-01-08T13:19:13,442 copying build/lib/lobster/core/utils/h5ad_utils.py -> build/bdist.linux-armv7l/wheel/./lobster/core/utils 2026-01-08T13:19:13,445 copying build/lib/lobster/core/client.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-08T13:19:13,448 copying build/lib/lobster/core/data_manager_v2.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-08T13:19:13,453 creating build/bdist.linux-armv7l/wheel/lobster/core/backends 2026-01-08T13:19:13,454 copying build/lib/lobster/core/backends/mudata_backend.py -> build/bdist.linux-armv7l/wheel/./lobster/core/backends 2026-01-08T13:19:13,456 copying build/lib/lobster/core/backends/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/backends 2026-01-08T13:19:13,458 copying build/lib/lobster/core/backends/h5ad_backend.py -> build/bdist.linux-armv7l/wheel/./lobster/core/backends 2026-01-08T13:19:13,461 copying build/lib/lobster/core/backends/base.py -> build/bdist.linux-armv7l/wheel/./lobster/core/backends 2026-01-08T13:19:13,463 creating build/bdist.linux-armv7l/wheel/lobster/core/schemas 2026-01-08T13:19:13,464 copying build/lib/lobster/core/schemas/metagenomics.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-08T13:19:13,468 copying build/lib/lobster/core/schemas/proteomics.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-08T13:19:13,470 copying build/lib/lobster/core/schemas/publication_queue.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-08T13:19:13,473 copying build/lib/lobster/core/schemas/export_schemas.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-08T13:19:13,476 copying build/lib/lobster/core/schemas/download_queue.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-08T13:19:13,478 copying build/lib/lobster/core/schemas/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-08T13:19:13,480 copying build/lib/lobster/core/schemas/transcriptomics.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-08T13:19:13,484 copying build/lib/lobster/core/schemas/metabolomics.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-08T13:19:13,487 copying build/lib/lobster/core/schemas/validation.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-08T13:19:13,489 copying build/lib/lobster/core/schemas/database_mappings.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-08T13:19:13,492 copying build/lib/lobster/core/schemas/database_registry.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-08T13:19:13,494 copying build/lib/lobster/core/schemas/sra.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-08T13:19:13,497 copying build/lib/lobster/core/schemas/protein_structure.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-08T13:19:13,500 copying build/lib/lobster/core/schemas/download_urls.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-08T13:19:13,503 copying build/lib/lobster/core/component_registry.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-08T13:19:13,506 creating build/bdist.linux-armv7l/wheel/lobster/core/adapters 2026-01-08T13:19:13,507 copying build/lib/lobster/core/adapters/protein_structure_adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters 2026-01-08T13:19:13,510 copying build/lib/lobster/core/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters 2026-01-08T13:19:13,511 copying build/lib/lobster/core/adapters/proteomics_adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters 2026-01-08T13:19:13,514 copying build/lib/lobster/core/adapters/transcriptomics_adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters 2026-01-08T13:19:13,517 copying build/lib/lobster/core/adapters/base.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters 2026-01-08T13:19:13,520 copying build/lib/lobster/core/adapters/pseudobulk_adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters 2026-01-08T13:19:13,522 copying build/lib/lobster/core/license_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-08T13:19:13,525 copying build/lib/lobster/_version.py -> build/bdist.linux-armv7l/wheel/./lobster 2026-01-08T13:19:13,527 creating build/bdist.linux-armv7l/wheel/lobster/utils 2026-01-08T13:19:13,528 copying build/lib/lobster/utils/file_analyzer.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-08T13:19:13,531 copying build/lib/lobster/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-08T13:19:13,533 copying build/lib/lobster/utils/progress_wrapper.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-08T13:19:13,535 copying build/lib/lobster/utils/ssl_utils.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-08T13:19:13,537 copying build/lib/lobster/utils/deviance.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-08T13:19:13,539 copying build/lib/lobster/utils/error_handlers.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-08T13:19:13,541 copying build/lib/lobster/utils/system.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-08T13:19:13,543 copying build/lib/lobster/utils/logger.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-08T13:19:13,545 copying build/lib/lobster/utils/callbacks.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-08T13:19:13,548 copying build/lib/lobster/utils/json_extractor.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-08T13:19:13,550 copying build/lib/lobster/utils/file_naming.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-08T13:19:13,554 creating build/bdist.linux-armv7l/wheel/lobster/config 2026-01-08T13:19:13,555 copying build/lib/lobster/config/llm_factory.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-08T13:19:13,557 copying build/lib/lobster/config/supervisor_config.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-08T13:19:13,560 copying build/lib/lobster/config/constants.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-08T13:19:13,561 copying build/lib/lobster/config/config_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-08T13:19:13,564 copying build/lib/lobster/config/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-08T13:19:13,566 copying build/lib/lobster/config/workspace_config.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-08T13:19:13,568 copying build/lib/lobster/config/provider_setup.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-08T13:19:13,570 copying build/lib/lobster/config/base_config.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-08T13:19:13,572 copying build/lib/lobster/config/agent_registry.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-08T13:19:13,575 copying build/lib/lobster/config/global_config.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-08T13:19:13,577 copying build/lib/lobster/config/model_service.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-08T13:19:13,579 copying build/lib/lobster/config/ssl_setup.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-08T13:19:13,582 copying build/lib/lobster/config/agent_config.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-08T13:19:13,585 copying build/lib/lobster/config/ollama_service.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-08T13:19:13,587 copying build/lib/lobster/config/agent_capabilities.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-08T13:19:13,590 creating build/bdist.linux-armv7l/wheel/lobster/config/providers 2026-01-08T13:19:13,591 copying build/lib/lobster/config/providers/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers 2026-01-08T13:19:13,594 copying build/lib/lobster/config/providers/base_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers 2026-01-08T13:19:13,596 copying build/lib/lobster/config/providers/gemini_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers 2026-01-08T13:19:13,598 copying build/lib/lobster/config/providers/bedrock_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers 2026-01-08T13:19:13,600 copying build/lib/lobster/config/providers/anthropic_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers 2026-01-08T13:19:13,603 copying build/lib/lobster/config/providers/ollama_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers 2026-01-08T13:19:13,605 copying build/lib/lobster/config/providers/registry.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers 2026-01-08T13:19:13,608 copying build/lib/lobster/config/subscription_tiers.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-08T13:19:13,610 copying build/lib/lobster/config/settings.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-08T13:19:13,613 creating build/bdist.linux-armv7l/wheel/lobster/tools 2026-01-08T13:19:13,615 creating build/bdist.linux-armv7l/wheel/lobster/tools/archive 2026-01-08T13:19:13,616 copying build/lib/lobster/tools/archive/publication_service.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/archive 2026-01-08T13:19:13,619 copying build/lib/lobster/tools/archive/unified_content_service.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/archive 2026-01-08T13:19:13,621 copying build/lib/lobster/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-08T13:19:13,623 copying build/lib/lobster/tools/expert_handoff_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-08T13:19:13,626 copying build/lib/lobster/tools/geo_parser.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-08T13:19:13,627 copying build/lib/lobster/tools/enhanced_handoff_tool.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-08T13:19:13,630 copying build/lib/lobster/tools/url_transforms.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-08T13:19:13,632 copying build/lib/lobster/tools/workspace_tool.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-08T13:19:13,636 copying build/lib/lobster/tools/gpu_detector.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-08T13:19:13,638 copying build/lib/lobster/tools/workflow_tracker.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-08T13:19:13,641 copying build/lib/lobster/tools/handoff_tool.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-08T13:19:13,643 copying build/lib/lobster/tools/download_orchestrator.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-08T13:19:13,646 copying build/lib/lobster/tools/todo_tools.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-08T13:19:13,648 copying build/lib/lobster/tools/custom_code_tool.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-08T13:19:13,651 copying build/lib/lobster/tools/expert_handoff_patterns.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-08T13:19:13,653 copying build/lib/lobster/tools/geo_downloader.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-08T13:19:13,655 copying build/lib/lobster/tools/rate_limiter.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-08T13:19:13,659 creating build/bdist.linux-armv7l/wheel/lobster/tools/providers 2026-01-08T13:19:13,660 copying build/lib/lobster/tools/providers/pride_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-08T13:19:13,663 copying build/lib/lobster/tools/providers/geo_utils.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-08T13:19:13,665 copying build/lib/lobster/tools/providers/pubmed_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-08T13:19:13,669 copying build/lib/lobster/tools/providers/biopython_entrez_wrapper.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-08T13:19:13,671 copying build/lib/lobster/tools/providers/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-08T13:19:13,673 copying build/lib/lobster/tools/providers/pmc_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-08T13:19:13,676 copying build/lib/lobster/tools/providers/base_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-08T13:19:13,678 copying build/lib/lobster/tools/providers/provider_registry.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-08T13:19:13,681 copying build/lib/lobster/tools/providers/structure_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-08T13:19:13,683 copying build/lib/lobster/tools/providers/webpage_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-08T13:19:13,685 copying build/lib/lobster/tools/providers/sra_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-08T13:19:13,688 copying build/lib/lobster/tools/providers/pride_normalizer.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-08T13:19:13,691 copying build/lib/lobster/tools/providers/organism_enum.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-08T13:19:13,693 copying build/lib/lobster/tools/providers/massive_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-08T13:19:13,696 copying build/lib/lobster/tools/providers/biorxiv_medrxiv_config.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-08T13:19:13,698 copying build/lib/lobster/tools/providers/publication_resolver.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-08T13:19:13,701 copying build/lib/lobster/tools/providers/geo_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-08T13:19:13,704 copying build/lib/lobster/tools/providers/biorxiv_medrxiv_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-08T13:19:13,708 copying build/lib/lobster/tools/providers/abstract_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-08T13:19:13,710 copying build/lib/lobster/tools/providers/ncbi_query_builder.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-08T13:19:13,713 copying build/lib/lobster/tools/providers/pdb_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-08T13:19:13,715 copying build/lib/lobster/tools/pipeline_strategy.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-08T13:19:13,718 creating build/bdist.linux-armv7l/wheel/lobster/agents 2026-01-08T13:19:13,719 copying build/lib/lobster/agents/supervisor.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-08T13:19:13,722 copying build/lib/lobster/agents/visualization_expert.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-08T13:19:13,725 creating build/bdist.linux-armv7l/wheel/lobster/agents/archive 2026-01-08T13:19:13,726 copying build/lib/lobster/agents/archive/research_agent_assistant.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/archive 2026-01-08T13:19:13,729 copying build/lib/lobster/agents/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-08T13:19:13,731 copying build/lib/lobster/agents/draw_graph.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-08T13:19:13,733 copying build/lib/lobster/agents/data_expert.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-08T13:19:13,736 copying build/lib/lobster/agents/research_agent.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-08T13:19:13,741 creating build/bdist.linux-armv7l/wheel/lobster/agents/langgraph_supervisor 2026-01-08T13:19:13,742 copying build/lib/lobster/agents/langgraph_supervisor/supervisor.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/langgraph_supervisor 2026-01-08T13:19:13,745 copying build/lib/lobster/agents/langgraph_supervisor/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/langgraph_supervisor 2026-01-08T13:19:13,747 copying build/lib/lobster/agents/langgraph_supervisor/agent_name.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/langgraph_supervisor 2026-01-08T13:19:13,749 copying build/lib/lobster/agents/langgraph_supervisor/handoff.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/langgraph_supervisor 2026-01-08T13:19:13,751 copying build/lib/lobster/agents/data_expert_assistant.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-08T13:19:13,755 creating build/bdist.linux-armv7l/wheel/lobster/agents/transcriptomics 2026-01-08T13:19:13,756 copying build/lib/lobster/agents/transcriptomics/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics 2026-01-08T13:19:13,758 copying build/lib/lobster/agents/transcriptomics/transcriptomics_expert.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics 2026-01-08T13:19:13,761 copying build/lib/lobster/agents/transcriptomics/state.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics 2026-01-08T13:19:13,763 copying build/lib/lobster/agents/transcriptomics/shared_tools.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics 2026-01-08T13:19:13,766 copying build/lib/lobster/agents/transcriptomics/annotation_expert.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics 2026-01-08T13:19:13,769 copying build/lib/lobster/agents/transcriptomics/de_analysis_expert.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics 2026-01-08T13:19:13,773 copying build/lib/lobster/agents/state.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-08T13:19:13,775 copying build/lib/lobster/agents/graph.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-08T13:19:13,778 creating build/bdist.linux-armv7l/wheel/lobster/agents/proteomics 2026-01-08T13:19:13,780 copying build/lib/lobster/agents/proteomics/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/proteomics 2026-01-08T13:19:13,782 copying build/lib/lobster/agents/proteomics/state.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/proteomics 2026-01-08T13:19:13,784 creating build/bdist.linux-armv7l/wheel/lobster/services 2026-01-08T13:19:13,786 creating build/bdist.linux-armv7l/wheel/lobster/services/templates 2026-01-08T13:19:13,787 copying build/lib/lobster/services/templates/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/templates 2026-01-08T13:19:13,789 copying build/lib/lobster/services/templates/annotation_templates.py -> build/bdist.linux-armv7l/wheel/./lobster/services/templates 2026-01-08T13:19:13,792 copying build/lib/lobster/services/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services 2026-01-08T13:19:13,794 creating build/bdist.linux-armv7l/wheel/lobster/services/execution 2026-01-08T13:19:13,795 copying build/lib/lobster/services/execution/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/execution 2026-01-08T13:19:13,797 copying build/lib/lobster/services/execution/execution_context_builder.py -> build/bdist.linux-armv7l/wheel/./lobster/services/execution 2026-01-08T13:19:13,799 copying build/lib/lobster/services/execution/custom_code_execution_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/execution 2026-01-08T13:19:13,802 creating build/bdist.linux-armv7l/wheel/lobster/services/metadata 2026-01-08T13:19:13,803 copying build/lib/lobster/services/metadata/manual_annotation_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata 2026-01-08T13:19:13,806 copying build/lib/lobster/services/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata 2026-01-08T13:19:13,808 copying build/lib/lobster/services/metadata/identifier_provenance_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata 2026-01-08T13:19:13,810 copying build/lib/lobster/services/metadata/sample_grouping_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata 2026-01-08T13:19:13,813 creating build/bdist.linux-armv7l/wheel/lobster/services/metadata/protocol_extraction 2026-01-08T13:19:13,814 copying build/lib/lobster/services/metadata/protocol_extraction/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction 2026-01-08T13:19:13,817 creating build/bdist.linux-armv7l/wheel/lobster/services/metadata/protocol_extraction/mass_spec 2026-01-08T13:19:13,818 copying build/lib/lobster/services/metadata/protocol_extraction/mass_spec/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/mass_spec 2026-01-08T13:19:13,820 copying build/lib/lobster/services/metadata/protocol_extraction/mass_spec/details.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/mass_spec 2026-01-08T13:19:13,822 copying build/lib/lobster/services/metadata/protocol_extraction/mass_spec/service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/mass_spec 2026-01-08T13:19:13,824 copying build/lib/lobster/services/metadata/protocol_extraction/base.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction 2026-01-08T13:19:13,826 creating build/bdist.linux-armv7l/wheel/lobster/services/metadata/protocol_extraction/rnaseq 2026-01-08T13:19:13,827 copying build/lib/lobster/services/metadata/protocol_extraction/rnaseq/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/rnaseq 2026-01-08T13:19:13,829 copying build/lib/lobster/services/metadata/protocol_extraction/rnaseq/details.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/rnaseq 2026-01-08T13:19:13,831 copying build/lib/lobster/services/metadata/protocol_extraction/rnaseq/service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/rnaseq 2026-01-08T13:19:13,834 creating build/bdist.linux-armv7l/wheel/lobster/services/metadata/protocol_extraction/amplicon 2026-01-08T13:19:13,835 copying build/lib/lobster/services/metadata/protocol_extraction/amplicon/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/amplicon 2026-01-08T13:19:13,837 copying build/lib/lobster/services/metadata/protocol_extraction/amplicon/details.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/amplicon 2026-01-08T13:19:13,840 creating build/bdist.linux-armv7l/wheel/lobster/services/metadata/protocol_extraction/amplicon/resources 2026-01-08T13:19:13,841 copying build/lib/lobster/services/metadata/protocol_extraction/amplicon/resources/primers.json -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/amplicon/resources 2026-01-08T13:19:13,844 copying build/lib/lobster/services/metadata/protocol_extraction/amplicon/service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/amplicon 2026-01-08T13:19:13,846 copying build/lib/lobster/services/metadata/metadata_standardization_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata 2026-01-08T13:19:13,849 copying build/lib/lobster/services/metadata/metadata_validation_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata 2026-01-08T13:19:13,853 creating build/bdist.linux-armv7l/wheel/lobster/services/analysis 2026-01-08T13:19:13,854 copying build/lib/lobster/services/analysis/scvi_embedding_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-08T13:19:13,857 copying build/lib/lobster/services/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-08T13:19:13,858 copying build/lib/lobster/services/analysis/enhanced_singlecell_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-08T13:19:13,862 copying build/lib/lobster/services/analysis/clustering_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-08T13:19:13,866 copying build/lib/lobster/services/analysis/structure_analysis_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-08T13:19:13,868 copying build/lib/lobster/services/analysis/differential_formula_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-08T13:19:13,871 copying build/lib/lobster/services/analysis/bulk_rnaseq_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-08T13:19:13,875 copying build/lib/lobster/services/analysis/pseudobulk_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-08T13:19:13,878 creating build/bdist.linux-armv7l/wheel/lobster/services/ml 2026-01-08T13:19:13,879 copying build/lib/lobster/services/ml/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/ml 2026-01-08T13:19:13,881 creating build/bdist.linux-armv7l/wheel/lobster/services/data_management 2026-01-08T13:19:13,882 copying build/lib/lobster/services/data_management/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_management 2026-01-08T13:19:13,884 copying build/lib/lobster/services/data_management/modality_management_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_management 2026-01-08T13:19:13,887 copying build/lib/lobster/services/data_management/concatenation_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_management 2026-01-08T13:19:13,891 creating build/bdist.linux-armv7l/wheel/lobster/services/quality 2026-01-08T13:19:13,891 copying build/lib/lobster/services/quality/quality_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/quality 2026-01-08T13:19:13,894 copying build/lib/lobster/services/quality/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/quality 2026-01-08T13:19:13,896 copying build/lib/lobster/services/quality/preprocessing_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/quality 2026-01-08T13:19:13,899 creating build/bdist.linux-armv7l/wheel/lobster/services/data_access 2026-01-08T13:19:13,900 copying build/lib/lobster/services/data_access/pride_download_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-08T13:19:13,903 copying build/lib/lobster/services/data_access/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-08T13:19:13,905 copying build/lib/lobster/services/data_access/sra_download_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-08T13:19:13,908 copying build/lib/lobster/services/data_access/docling_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-08T13:19:13,911 copying build/lib/lobster/services/data_access/massive_download_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-08T13:19:13,913 copying build/lib/lobster/services/data_access/protein_structure_fetch_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-08T13:19:13,916 copying build/lib/lobster/services/data_access/workspace_content_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-08T13:19:13,919 creating build/bdist.linux-armv7l/wheel/lobster/services/data_access/geo 2026-01-08T13:19:13,920 copying build/lib/lobster/services/data_access/geo/constants.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo 2026-01-08T13:19:13,923 copying build/lib/lobster/services/data_access/geo/downloader.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo 2026-01-08T13:19:13,926 copying build/lib/lobster/services/data_access/geo/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo 2026-01-08T13:19:13,927 copying build/lib/lobster/services/data_access/geo/facade.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo 2026-01-08T13:19:13,929 copying build/lib/lobster/services/data_access/geo/strategy.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo 2026-01-08T13:19:13,932 creating build/bdist.linux-armv7l/wheel/lobster/services/data_access/geo/sample 2026-01-08T13:19:13,933 copying build/lib/lobster/services/data_access/geo/sample/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo/sample 2026-01-08T13:19:13,936 creating build/bdist.linux-armv7l/wheel/lobster/services/data_access/geo/metadata 2026-01-08T13:19:13,937 copying build/lib/lobster/services/data_access/geo/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo/metadata 2026-01-08T13:19:13,939 creating build/bdist.linux-armv7l/wheel/lobster/services/data_access/geo/loaders 2026-01-08T13:19:13,940 copying build/lib/lobster/services/data_access/geo/loaders/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo/loaders 2026-01-08T13:19:13,942 copying build/lib/lobster/services/data_access/geo/loaders/tenx.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo/loaders 2026-01-08T13:19:13,944 creating build/bdist.linux-armv7l/wheel/lobster/services/data_access/geo/utils 2026-01-08T13:19:13,945 copying build/lib/lobster/services/data_access/geo/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo/utils 2026-01-08T13:19:13,947 copying build/lib/lobster/services/data_access/geo/parser.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo 2026-01-08T13:19:13,951 copying build/lib/lobster/services/data_access/geo_download_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-08T13:19:13,953 copying build/lib/lobster/services/data_access/content_access_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-08T13:19:13,957 copying build/lib/lobster/services/data_access/geo_fallback_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-08T13:19:13,960 copying build/lib/lobster/services/data_access/geo_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-08T13:19:13,966 creating build/bdist.linux-armv7l/wheel/lobster/services/orchestration 2026-01-08T13:19:13,967 copying build/lib/lobster/services/orchestration/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/orchestration 2026-01-08T13:19:13,969 copying build/lib/lobster/services/orchestration/publication_processing_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/orchestration 2026-01-08T13:19:13,973 creating build/bdist.linux-armv7l/wheel/lobster/services/visualization 2026-01-08T13:19:13,974 copying build/lib/lobster/services/visualization/bulk_visualization_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/visualization 2026-01-08T13:19:13,977 copying build/lib/lobster/services/visualization/pymol_visualization_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/visualization 2026-01-08T13:19:13,981 copying build/lib/lobster/services/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/visualization 2026-01-08T13:19:13,983 copying build/lib/lobster/services/visualization/visualization_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/visualization 2026-01-08T13:19:13,987 running install_egg_info 2026-01-08T13:19:13,993 Copying lobster_ai.egg-info to build/bdist.linux-armv7l/wheel/./lobster_ai-0.4.2.1-py3.11.egg-info 2026-01-08T13:19:14,007 running install_scripts 2026-01-08T13:19:14,021 creating build/bdist.linux-armv7l/wheel/lobster_ai-0.4.2.1.dist-info/WHEEL 2026-01-08T13:19:14,024 creating '/tmp/pip-wheel-joslen57/.tmp-h81im519/lobster_ai-0.4.2.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-01-08T13:19:14,027 adding 'lobster/__main__.py' 2026-01-08T13:19:14,029 adding 'lobster/_version.py' 2026-01-08T13:19:14,057 adding 'lobster/cli.py' 2026-01-08T13:19:14,061 adding 'lobster/main.py' 2026-01-08T13:19:14,062 adding 'lobster/version.py' 2026-01-08T13:19:14,065 adding 'lobster/agents/__init__.py' 2026-01-08T13:19:14,072 adding 'lobster/agents/data_expert.py' 2026-01-08T13:19:14,077 adding 'lobster/agents/data_expert_assistant.py' 2026-01-08T13:19:14,079 adding 'lobster/agents/draw_graph.py' 2026-01-08T13:19:14,082 adding 'lobster/agents/graph.py' 2026-01-08T13:19:14,096 adding 'lobster/agents/research_agent.py' 2026-01-08T13:19:14,100 adding 'lobster/agents/state.py' 2026-01-08T13:19:14,105 adding 'lobster/agents/supervisor.py' 2026-01-08T13:19:14,108 adding 'lobster/agents/visualization_expert.py' 2026-01-08T13:19:14,111 adding 'lobster/agents/archive/research_agent_assistant.py' 2026-01-08T13:19:14,114 adding 'lobster/agents/langgraph_supervisor/__init__.py' 2026-01-08T13:19:14,116 adding 'lobster/agents/langgraph_supervisor/agent_name.py' 2026-01-08T13:19:14,118 adding 'lobster/agents/langgraph_supervisor/handoff.py' 2026-01-08T13:19:14,121 adding 'lobster/agents/langgraph_supervisor/supervisor.py' 2026-01-08T13:19:14,123 adding 'lobster/agents/proteomics/__init__.py' 2026-01-08T13:19:14,125 adding 'lobster/agents/proteomics/state.py' 2026-01-08T13:19:14,127 adding 'lobster/agents/transcriptomics/__init__.py' 2026-01-08T13:19:14,132 adding 'lobster/agents/transcriptomics/annotation_expert.py' 2026-01-08T13:19:14,141 adding 'lobster/agents/transcriptomics/de_analysis_expert.py' 2026-01-08T13:19:14,145 adding 'lobster/agents/transcriptomics/shared_tools.py' 2026-01-08T13:19:14,147 adding 'lobster/agents/transcriptomics/state.py' 2026-01-08T13:19:14,153 adding 'lobster/agents/transcriptomics/transcriptomics_expert.py' 2026-01-08T13:19:14,155 adding 'lobster/cli_internal/__init__.py' 2026-01-08T13:19:14,157 adding 'lobster/cli_internal/commands/__init__.py' 2026-01-08T13:19:14,159 adding 'lobster/cli_internal/commands/output_adapter.py' 2026-01-08T13:19:14,161 adding 'lobster/cli_internal/commands/heavy/__init__.py' 2026-01-08T13:19:14,163 adding 'lobster/cli_internal/commands/heavy/data_commands.py' 2026-01-08T13:19:14,166 adding 'lobster/cli_internal/commands/heavy/modality_commands.py' 2026-01-08T13:19:14,170 adding 'lobster/cli_internal/commands/heavy/visualization_commands.py' 2026-01-08T13:19:14,173 adding 'lobster/cli_internal/commands/light/__init__.py' 2026-01-08T13:19:14,177 adding 'lobster/cli_internal/commands/light/config_commands.py' 2026-01-08T13:19:14,183 adding 'lobster/cli_internal/commands/light/file_commands.py' 2026-01-08T13:19:14,187 adding 'lobster/cli_internal/commands/light/metadata_commands.py' 2026-01-08T13:19:14,190 adding 'lobster/cli_internal/commands/light/pipeline_commands.py' 2026-01-08T13:19:14,196 adding 'lobster/cli_internal/commands/light/queue_commands.py' 2026-01-08T13:19:14,202 adding 'lobster/cli_internal/commands/light/workspace_commands.py' 2026-01-08T13:19:14,205 adding 'lobster/cli_internal/utils/__init__.py' 2026-01-08T13:19:14,209 adding 'lobster/cli_internal/utils/path_resolution.py' 2026-01-08T13:19:14,212 adding 'lobster/config/__init__.py' 2026-01-08T13:19:14,215 adding 'lobster/config/agent_capabilities.py' 2026-01-08T13:19:14,221 adding 'lobster/config/agent_config.py' 2026-01-08T13:19:14,225 adding 'lobster/config/agent_registry.py' 2026-01-08T13:19:14,228 adding 'lobster/config/base_config.py' 2026-01-08T13:19:14,232 adding 'lobster/config/config_manager.py' 2026-01-08T13:19:14,234 adding 'lobster/config/constants.py' 2026-01-08T13:19:14,237 adding 'lobster/config/global_config.py' 2026-01-08T13:19:14,241 adding 'lobster/config/llm_factory.py' 2026-01-08T13:19:14,244 adding 'lobster/config/model_service.py' 2026-01-08T13:19:14,248 adding 'lobster/config/ollama_service.py' 2026-01-08T13:19:14,251 adding 'lobster/config/provider_setup.py' 2026-01-08T13:19:14,255 adding 'lobster/config/settings.py' 2026-01-08T13:19:14,259 adding 'lobster/config/ssl_setup.py' 2026-01-08T13:19:14,262 adding 'lobster/config/subscription_tiers.py' 2026-01-08T13:19:14,265 adding 'lobster/config/supervisor_config.py' 2026-01-08T13:19:14,268 adding 'lobster/config/workspace_config.py' 2026-01-08T13:19:14,270 adding 'lobster/config/providers/__init__.py' 2026-01-08T13:19:14,272 adding 'lobster/config/providers/anthropic_provider.py' 2026-01-08T13:19:14,274 adding 'lobster/config/providers/base_provider.py' 2026-01-08T13:19:14,275 adding 'lobster/config/providers/bedrock_provider.py' 2026-01-08T13:19:14,277 adding 'lobster/config/providers/gemini_provider.py' 2026-01-08T13:19:14,280 adding 'lobster/config/providers/ollama_provider.py' 2026-01-08T13:19:14,281 adding 'lobster/config/providers/registry.py' 2026-01-08T13:19:14,283 adding 'lobster/core/__init__.py' 2026-01-08T13:19:14,286 adding 'lobster/core/analysis_ir.py' 2026-01-08T13:19:14,288 adding 'lobster/core/archive_utils.py' 2026-01-08T13:19:14,298 adding 'lobster/core/client.py' 2026-01-08T13:19:14,300 adding 'lobster/core/component_registry.py' 2026-01-08T13:19:14,302 adding 'lobster/core/config_resolver.py' 2026-01-08T13:19:14,316 adding 'lobster/core/data_manager_v2.py' 2026-01-08T13:19:14,318 adding 'lobster/core/download_queue.py' 2026-01-08T13:19:14,320 adding 'lobster/core/exceptions.py' 2026-01-08T13:19:14,322 adding 'lobster/core/ir_coverage.py' 2026-01-08T13:19:14,325 adding 'lobster/core/license_manager.py' 2026-01-08T13:19:14,327 adding 'lobster/core/notebook_executor.py' 2026-01-08T13:19:14,331 adding 'lobster/core/notebook_exporter.py' 2026-01-08T13:19:14,333 adding 'lobster/core/notebook_validator.py' 2026-01-08T13:19:14,336 adding 'lobster/core/plot_manager.py' 2026-01-08T13:19:14,338 adding 'lobster/core/plugin_loader.py' 2026-01-08T13:19:14,340 adding 'lobster/core/provenance.py' 2026-01-08T13:19:14,343 adding 'lobster/core/publication_queue.py' 2026-01-08T13:19:14,344 adding 'lobster/core/queue_storage.py' 2026-01-08T13:19:14,347 adding 'lobster/core/ris_parser.py' 2026-01-08T13:19:14,348 adding 'lobster/core/workspace.py' 2026-01-08T13:19:14,350 adding 'lobster/core/adapters/__init__.py' 2026-01-08T13:19:14,352 adding 'lobster/core/adapters/base.py' 2026-01-08T13:19:14,355 adding 'lobster/core/adapters/protein_structure_adapter.py' 2026-01-08T13:19:14,358 adding 'lobster/core/adapters/proteomics_adapter.py' 2026-01-08T13:19:14,361 adding 'lobster/core/adapters/pseudobulk_adapter.py' 2026-01-08T13:19:14,364 adding 'lobster/core/adapters/transcriptomics_adapter.py' 2026-01-08T13:19:14,366 adding 'lobster/core/backends/__init__.py' 2026-01-08T13:19:14,368 adding 'lobster/core/backends/base.py' 2026-01-08T13:19:14,372 adding 'lobster/core/backends/h5ad_backend.py' 2026-01-08T13:19:14,374 adding 'lobster/core/backends/mudata_backend.py' 2026-01-08T13:19:14,376 adding 'lobster/core/identifiers/__init__.py' 2026-01-08T13:19:14,378 adding 'lobster/core/identifiers/accession_resolver.py' 2026-01-08T13:19:14,380 adding 'lobster/core/interfaces/__init__.py' 2026-01-08T13:19:14,382 adding 'lobster/core/interfaces/adapter.py' 2026-01-08T13:19:14,383 adding 'lobster/core/interfaces/backend.py' 2026-01-08T13:19:14,385 adding 'lobster/core/interfaces/base_client.py' 2026-01-08T13:19:14,388 adding 'lobster/core/interfaces/download_service.py' 2026-01-08T13:19:14,390 adding 'lobster/core/interfaces/validator.py' 2026-01-08T13:19:14,391 adding 'lobster/core/schemas/__init__.py' 2026-01-08T13:19:14,394 adding 'lobster/core/schemas/database_mappings.py' 2026-01-08T13:19:14,396 adding 'lobster/core/schemas/database_registry.py' 2026-01-08T13:19:14,398 adding 'lobster/core/schemas/download_queue.py' 2026-01-08T13:19:14,401 adding 'lobster/core/schemas/download_urls.py' 2026-01-08T13:19:14,405 adding 'lobster/core/schemas/export_schemas.py' 2026-01-08T13:19:14,410 adding 'lobster/core/schemas/metabolomics.py' 2026-01-08T13:19:14,415 adding 'lobster/core/schemas/metagenomics.py' 2026-01-08T13:19:14,418 adding 'lobster/core/schemas/protein_structure.py' 2026-01-08T13:19:14,421 adding 'lobster/core/schemas/proteomics.py' 2026-01-08T13:19:14,424 adding 'lobster/core/schemas/publication_queue.py' 2026-01-08T13:19:14,429 adding 'lobster/core/schemas/sra.py' 2026-01-08T13:19:14,436 adding 'lobster/core/schemas/transcriptomics.py' 2026-01-08T13:19:14,438 adding 'lobster/core/schemas/validation.py' 2026-01-08T13:19:14,440 adding 'lobster/core/utils/__init__.py' 2026-01-08T13:19:14,442 adding 'lobster/core/utils/h5ad_utils.py' 2026-01-08T13:19:14,444 adding 'lobster/lobster_cloud/__init__.py' 2026-01-08T13:19:14,446 adding 'lobster/lobster_cloud/client.py' 2026-01-08T13:19:14,447 adding 'lobster/services/__init__.py' 2026-01-08T13:19:14,449 adding 'lobster/services/analysis/__init__.py' 2026-01-08T13:19:14,457 adding 'lobster/services/analysis/bulk_rnaseq_service.py' 2026-01-08T13:19:14,466 adding 'lobster/services/analysis/clustering_service.py' 2026-01-08T13:19:14,471 adding 'lobster/services/analysis/differential_formula_service.py' 2026-01-08T13:19:14,477 adding 'lobster/services/analysis/enhanced_singlecell_service.py' 2026-01-08T13:19:14,480 adding 'lobster/services/analysis/pseudobulk_service.py' 2026-01-08T13:19:14,482 adding 'lobster/services/analysis/scvi_embedding_service.py' 2026-01-08T13:19:14,485 adding 'lobster/services/analysis/structure_analysis_service.py' 2026-01-08T13:19:14,487 adding 'lobster/services/data_access/__init__.py' 2026-01-08T13:19:14,495 adding 'lobster/services/data_access/content_access_service.py' 2026-01-08T13:19:14,501 adding 'lobster/services/data_access/docling_service.py' 2026-01-08T13:19:14,504 adding 'lobster/services/data_access/geo_download_service.py' 2026-01-08T13:19:14,507 adding 'lobster/services/data_access/geo_fallback_service.py' 2026-01-08T13:19:14,531 adding 'lobster/services/data_access/geo_service.py' 2026-01-08T13:19:14,535 adding 'lobster/services/data_access/massive_download_service.py' 2026-01-08T13:19:14,538 adding 'lobster/services/data_access/pride_download_service.py' 2026-01-08T13:19:14,540 adding 'lobster/services/data_access/protein_structure_fetch_service.py' 2026-01-08T13:19:14,545 adding 'lobster/services/data_access/sra_download_service.py' 2026-01-08T13:19:14,550 adding 'lobster/services/data_access/workspace_content_service.py' 2026-01-08T13:19:14,552 adding 'lobster/services/data_access/geo/__init__.py' 2026-01-08T13:19:14,553 adding 'lobster/services/data_access/geo/constants.py' 2026-01-08T13:19:14,557 adding 'lobster/services/data_access/geo/downloader.py' 2026-01-08T13:19:14,559 adding 'lobster/services/data_access/geo/facade.py' 2026-01-08T13:19:14,566 adding 'lobster/services/data_access/geo/parser.py' 2026-01-08T13:19:14,569 adding 'lobster/services/data_access/geo/strategy.py' 2026-01-08T13:19:14,571 adding 'lobster/services/data_access/geo/loaders/__init__.py' 2026-01-08T13:19:14,573 adding 'lobster/services/data_access/geo/loaders/tenx.py' 2026-01-08T13:19:14,575 adding 'lobster/services/data_access/geo/metadata/__init__.py' 2026-01-08T13:19:14,576 adding 'lobster/services/data_access/geo/sample/__init__.py' 2026-01-08T13:19:14,578 adding 'lobster/services/data_access/geo/utils/__init__.py' 2026-01-08T13:19:14,579 adding 'lobster/services/data_management/__init__.py' 2026-01-08T13:19:14,584 adding 'lobster/services/data_management/concatenation_service.py' 2026-01-08T13:19:14,587 adding 'lobster/services/data_management/modality_management_service.py' 2026-01-08T13:19:14,589 adding 'lobster/services/execution/__init__.py' 2026-01-08T13:19:14,593 adding 'lobster/services/execution/custom_code_execution_service.py' 2026-01-08T13:19:14,595 adding 'lobster/services/execution/execution_context_builder.py' 2026-01-08T13:19:14,597 adding 'lobster/services/metadata/__init__.py' 2026-01-08T13:19:14,599 adding 'lobster/services/metadata/identifier_provenance_service.py' 2026-01-08T13:19:14,603 adding 'lobster/services/metadata/manual_annotation_service.py' 2026-01-08T13:19:14,606 adding 'lobster/services/metadata/metadata_standardization_service.py' 2026-01-08T13:19:14,610 adding 'lobster/services/metadata/metadata_validation_service.py' 2026-01-08T13:19:14,612 adding 'lobster/services/metadata/sample_grouping_service.py' 2026-01-08T13:19:14,614 adding 'lobster/services/metadata/protocol_extraction/__init__.py' 2026-01-08T13:19:14,615 adding 'lobster/services/metadata/protocol_extraction/base.py' 2026-01-08T13:19:14,617 adding 'lobster/services/metadata/protocol_extraction/amplicon/__init__.py' 2026-01-08T13:19:14,619 adding 'lobster/services/metadata/protocol_extraction/amplicon/details.py' 2026-01-08T13:19:14,622 adding 'lobster/services/metadata/protocol_extraction/amplicon/service.py' 2026-01-08T13:19:14,623 adding 'lobster/services/metadata/protocol_extraction/amplicon/resources/primers.json' 2026-01-08T13:19:14,625 adding 'lobster/services/metadata/protocol_extraction/mass_spec/__init__.py' 2026-01-08T13:19:14,626 adding 'lobster/services/metadata/protocol_extraction/mass_spec/details.py' 2026-01-08T13:19:14,627 adding 'lobster/services/metadata/protocol_extraction/mass_spec/service.py' 2026-01-08T13:19:14,629 adding 'lobster/services/metadata/protocol_extraction/rnaseq/__init__.py' 2026-01-08T13:19:14,630 adding 'lobster/services/metadata/protocol_extraction/rnaseq/details.py' 2026-01-08T13:19:14,632 adding 'lobster/services/metadata/protocol_extraction/rnaseq/service.py' 2026-01-08T13:19:14,633 adding 'lobster/services/ml/__init__.py' 2026-01-08T13:19:14,635 adding 'lobster/services/orchestration/__init__.py' 2026-01-08T13:19:14,643 adding 'lobster/services/orchestration/publication_processing_service.py' 2026-01-08T13:19:14,645 adding 'lobster/services/quality/__init__.py' 2026-01-08T13:19:14,650 adding 'lobster/services/quality/preprocessing_service.py' 2026-01-08T13:19:14,654 adding 'lobster/services/quality/quality_service.py' 2026-01-08T13:19:14,656 adding 'lobster/services/templates/__init__.py' 2026-01-08T13:19:14,660 adding 'lobster/services/templates/annotation_templates.py' 2026-01-08T13:19:14,662 adding 'lobster/services/visualization/__init__.py' 2026-01-08T13:19:14,664 adding 'lobster/services/visualization/bulk_visualization_service.py' 2026-01-08T13:19:14,668 adding 'lobster/services/visualization/pymol_visualization_service.py' 2026-01-08T13:19:14,675 adding 'lobster/services/visualization/visualization_service.py' 2026-01-08T13:19:14,678 adding 'lobster/tools/__init__.py' 2026-01-08T13:19:14,680 adding 'lobster/tools/custom_code_tool.py' 2026-01-08T13:19:14,682 adding 'lobster/tools/download_orchestrator.py' 2026-01-08T13:19:14,685 adding 'lobster/tools/enhanced_handoff_tool.py' 2026-01-08T13:19:14,687 adding 'lobster/tools/expert_handoff_manager.py' 2026-01-08T13:19:14,689 adding 'lobster/tools/expert_handoff_patterns.py' 2026-01-08T13:19:14,690 adding 'lobster/tools/geo_downloader.py' 2026-01-08T13:19:14,691 adding 'lobster/tools/geo_parser.py' 2026-01-08T13:19:14,693 adding 'lobster/tools/gpu_detector.py' 2026-01-08T13:19:14,695 adding 'lobster/tools/handoff_tool.py' 2026-01-08T13:19:14,696 adding 'lobster/tools/pipeline_strategy.py' 2026-01-08T13:19:14,700 adding 'lobster/tools/rate_limiter.py' 2026-01-08T13:19:14,702 adding 'lobster/tools/todo_tools.py' 2026-01-08T13:19:14,703 adding 'lobster/tools/url_transforms.py' 2026-01-08T13:19:14,706 adding 'lobster/tools/workflow_tracker.py' 2026-01-08T13:19:14,718 adding 'lobster/tools/workspace_tool.py' 2026-01-08T13:19:14,722 adding 'lobster/tools/archive/publication_service.py' 2026-01-08T13:19:14,725 adding 'lobster/tools/archive/unified_content_service.py' 2026-01-08T13:19:14,728 adding 'lobster/tools/providers/__init__.py' 2026-01-08T13:19:14,730 adding 'lobster/tools/providers/abstract_provider.py' 2026-01-08T13:19:14,732 adding 'lobster/tools/providers/base_provider.py' 2026-01-08T13:19:14,734 adding 'lobster/tools/providers/biopython_entrez_wrapper.py' 2026-01-08T13:19:14,735 adding 'lobster/tools/providers/biorxiv_medrxiv_config.py' 2026-01-08T13:19:14,741 adding 'lobster/tools/providers/biorxiv_medrxiv_provider.py' 2026-01-08T13:19:14,747 adding 'lobster/tools/providers/geo_provider.py' 2026-01-08T13:19:14,749 adding 'lobster/tools/providers/geo_utils.py' 2026-01-08T13:19:14,751 adding 'lobster/tools/providers/massive_provider.py' 2026-01-08T13:19:14,754 adding 'lobster/tools/providers/ncbi_query_builder.py' 2026-01-08T13:19:14,756 adding 'lobster/tools/providers/organism_enum.py' 2026-01-08T13:19:14,758 adding 'lobster/tools/providers/pdb_provider.py' 2026-01-08T13:19:14,765 adding 'lobster/tools/providers/pmc_provider.py' 2026-01-08T13:19:14,768 adding 'lobster/tools/providers/pride_normalizer.py' 2026-01-08T13:19:14,771 adding 'lobster/tools/providers/pride_provider.py' 2026-01-08T13:19:14,773 adding 'lobster/tools/providers/provider_registry.py' 2026-01-08T13:19:14,776 adding 'lobster/tools/providers/publication_resolver.py' 2026-01-08T13:19:14,785 adding 'lobster/tools/providers/pubmed_provider.py' 2026-01-08T13:19:14,792 adding 'lobster/tools/providers/sra_provider.py' 2026-01-08T13:19:14,793 adding 'lobster/tools/providers/structure_provider.py' 2026-01-08T13:19:14,796 adding 'lobster/tools/providers/webpage_provider.py' 2026-01-08T13:19:14,797 adding 'lobster/ui/__init__.py' 2026-01-08T13:19:14,800 adding 'lobster/ui/commands.py' 2026-01-08T13:19:14,803 adding 'lobster/ui/console_manager.py' 2026-01-08T13:19:14,805 adding 'lobster/ui/live_dashboard.py' 2026-01-08T13:19:14,806 adding 'lobster/ui/os_app.py' 2026-01-08T13:19:14,809 adding 'lobster/ui/progress_manager.py' 2026-01-08T13:19:14,811 adding 'lobster/ui/themes.py' 2026-01-08T13:19:14,813 adding 'lobster/ui/callbacks/__init__.py' 2026-01-08T13:19:14,815 adding 'lobster/ui/callbacks/textual_callback.py' 2026-01-08T13:19:14,817 adding 'lobster/ui/components/__init__.py' 2026-01-08T13:19:14,819 adding 'lobster/ui/components/file_tree.py' 2026-01-08T13:19:14,822 adding 'lobster/ui/components/multi_progress.py' 2026-01-08T13:19:14,824 adding 'lobster/ui/components/parallel_workers_progress.py' 2026-01-08T13:19:14,826 adding 'lobster/ui/components/status_display.py' 2026-01-08T13:19:14,828 adding 'lobster/ui/formatters/__init__.py' 2026-01-08T13:19:14,830 adding 'lobster/ui/screens/__init__.py' 2026-01-08T13:19:14,833 adding 'lobster/ui/screens/analysis_screen.py' 2026-01-08T13:19:14,835 adding 'lobster/ui/services/__init__.py' 2026-01-08T13:19:14,837 adding 'lobster/ui/services/error_service.py' 2026-01-08T13:19:14,839 adding 'lobster/ui/widgets/__init__.py' 2026-01-08T13:19:14,840 adding 'lobster/ui/widgets/activity_log.py' 2026-01-08T13:19:14,842 adding 'lobster/ui/widgets/adapters_panel.py' 2026-01-08T13:19:14,844 adding 'lobster/ui/widgets/agents_panel.py' 2026-01-08T13:19:14,845 adding 'lobster/ui/widgets/chat_message.py' 2026-01-08T13:19:14,847 adding 'lobster/ui/widgets/connections_panel.py' 2026-01-08T13:19:14,850 adding 'lobster/ui/widgets/data_hub.py' 2026-01-08T13:19:14,852 adding 'lobster/ui/widgets/error_modal.py' 2026-01-08T13:19:14,853 adding 'lobster/ui/widgets/modality_list.py' 2026-01-08T13:19:14,855 adding 'lobster/ui/widgets/plot_preview.py' 2026-01-08T13:19:14,856 adding 'lobster/ui/widgets/query_prompt.py' 2026-01-08T13:19:14,858 adding 'lobster/ui/widgets/queue_panel.py' 2026-01-08T13:19:14,860 adding 'lobster/ui/widgets/queue_status_bar.py' 2026-01-08T13:19:14,862 adding 'lobster/ui/widgets/results_display.py' 2026-01-08T13:19:14,863 adding 'lobster/ui/widgets/status_bar.py' 2026-01-08T13:19:14,865 adding 'lobster/ui/widgets/system_info.py' 2026-01-08T13:19:14,866 adding 'lobster/ui/widgets/token_usage_panel.py' 2026-01-08T13:19:14,868 adding 'lobster/utils/__init__.py' 2026-01-08T13:19:14,874 adding 'lobster/utils/callbacks.py' 2026-01-08T13:19:14,876 adding 'lobster/utils/deviance.py' 2026-01-08T13:19:14,878 adding 'lobster/utils/error_handlers.py' 2026-01-08T13:19:14,881 adding 'lobster/utils/file_analyzer.py' 2026-01-08T13:19:14,883 adding 'lobster/utils/file_naming.py' 2026-01-08T13:19:14,885 adding 'lobster/utils/json_extractor.py' 2026-01-08T13:19:14,886 adding 'lobster/utils/logger.py' 2026-01-08T13:19:14,888 adding 'lobster/utils/progress_wrapper.py' 2026-01-08T13:19:14,890 adding 'lobster/utils/ssl_utils.py' 2026-01-08T13:19:14,891 adding 'lobster/utils/system.py' 2026-01-08T13:19:14,899 adding 'lobster_ai-0.4.2.1.dist-info/licenses/LICENSE' 2026-01-08T13:19:14,901 adding 'lobster_ai-0.4.2.1.dist-info/METADATA' 2026-01-08T13:19:14,902 adding 'lobster_ai-0.4.2.1.dist-info/WHEEL' 2026-01-08T13:19:14,903 adding 'lobster_ai-0.4.2.1.dist-info/entry_points.txt' 2026-01-08T13:19:14,904 adding 'lobster_ai-0.4.2.1.dist-info/top_level.txt' 2026-01-08T13:19:14,909 adding 'lobster_ai-0.4.2.1.dist-info/RECORD' 2026-01-08T13:19:14,928 removing build/bdist.linux-armv7l/wheel 2026-01-08T13:19:15,120 Building wheel for lobster-ai (pyproject.toml): finished with status 'done' 2026-01-08T13:19:15,309 Created wheel for lobster-ai: filename=lobster_ai-0.4.2.1-py3-none-any.whl size=1362025 sha256=f40da141654e6ba176852a9d7091ec6008895f331121efb4dcd83b107556c66a 2026-01-08T13:19:15,310 Stored in directory: /tmp/pip-ephem-wheel-cache-6fgy6u4o/wheels/10/66/0a/bbef49f152e91a2d607e2971f7e64a11092fd7176265530ce8 2026-01-08T13:19:15,336 Successfully built lobster-ai 2026-01-08T13:19:15,391 Removed build tracker: '/tmp/pip-build-tracker-vzf305i1'