2026-01-08T15:39:39,214 Created temporary directory: /tmp/pip-ephem-wheel-cache-4pjbx13v 2026-01-08T15:39:39,216 Created temporary directory: /tmp/pip-build-tracker-iz_wsv4a 2026-01-08T15:39:39,216 Initialized build tracking at /tmp/pip-build-tracker-iz_wsv4a 2026-01-08T15:39:39,217 Created build tracker: /tmp/pip-build-tracker-iz_wsv4a 2026-01-08T15:39:39,217 Entered build tracker: /tmp/pip-build-tracker-iz_wsv4a 2026-01-08T15:39:39,218 Created temporary directory: /tmp/pip-wheel-l4_usz_r 2026-01-08T15:39:39,221 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-01-08T15:39:39,223 Created temporary directory: /tmp/pip-ephem-wheel-cache-yztuzuoz 2026-01-08T15:39:39,248 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-01-08T15:39:39,251 2 location(s) to search for versions of td2: 2026-01-08T15:39:39,251 * https://pypi.org/simple/td2/ 2026-01-08T15:39:39,251 * https://www.piwheels.org/simple/td2/ 2026-01-08T15:39:39,252 Fetching project page and analyzing links: https://pypi.org/simple/td2/ 2026-01-08T15:39:39,253 Getting page https://pypi.org/simple/td2/ 2026-01-08T15:39:39,254 Found index url https://pypi.org/simple 2026-01-08T15:39:39,464 Fetched page https://pypi.org/simple/td2/ as application/vnd.pypi.simple.v1+json 2026-01-08T15:39:39,468 Skipping link: No binaries permitted for td2: https://files.pythonhosted.org/packages/43/52/258b0d913bfa795951cd68eb8f202e56bb686e2ac215bd537f5e5d8523a9/TD2-0.1.0-py3-none-any.whl (from https://pypi.org/simple/td2/) (requires-python:>=3.8) 2026-01-08T15:39:39,469 Found link https://files.pythonhosted.org/packages/ad/37/151603746c26b5ef38676339bbf67afdb530888937fbb8e1e775f27208ac/td2-0.1.0.tar.gz (from https://pypi.org/simple/td2/) (requires-python:>=3.8), version: 0.1.0 2026-01-08T15:39:39,470 Skipping link: No binaries permitted for td2: https://files.pythonhosted.org/packages/f6/f9/c52c232ea9f0677a8dcc8372c808f2db059730d017e5081a1c0ce151398c/TD2-1.0.0-py3-none-any.whl (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9) 2026-01-08T15:39:39,471 Found link https://files.pythonhosted.org/packages/42/df/2123f303f9668376b0783d67b0dc1d77ab320fcd7cd6499b54d2bbdf24ee/td2-1.0.0.tar.gz (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9), version: 1.0.0 2026-01-08T15:39:39,472 Skipping link: No binaries permitted for td2: https://files.pythonhosted.org/packages/ff/a4/ab6be14acf5c1f585afc4881d8fc05f1aa2ba8985326d9af761acf9feaa4/td2-1.0.1-py3-none-any.whl (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9) 2026-01-08T15:39:39,473 Found link https://files.pythonhosted.org/packages/27/76/0de889e7ac948b0a6c8de999fac74484afebb986c22a31f1541ed61cf3a9/td2-1.0.1.tar.gz (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9), version: 1.0.1 2026-01-08T15:39:39,473 Skipping link: No binaries permitted for td2: https://files.pythonhosted.org/packages/0b/85/7fa6d4c7d930f86d60ad89ece226cabe83198b2f640b4936c9b826934d8e/TD2-1.0.2-py3-none-any.whl (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9) 2026-01-08T15:39:39,474 Skipping link: No binaries permitted for td2: https://files.pythonhosted.org/packages/59/7f/c557088b575b11b930a810c4b08d7947c231bfbd6083e23691ab6d4f35d7/td2-1.0.2-py3-none-any.whl (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9) 2026-01-08T15:39:39,475 Found link https://files.pythonhosted.org/packages/03/86/7cacd5aebbaf6de14d05cd2c46ab4d8214bd5674713e018237f19510054f/td2-1.0.2.tar.gz (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9), version: 1.0.2 2026-01-08T15:39:39,476 Skipping link: No binaries permitted for td2: https://files.pythonhosted.org/packages/9c/12/08401c017e913b8fd32b212039af4a257aad486f53600624d391560eb554/TD2-1.0.3-py3-none-any.whl (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9) 2026-01-08T15:39:39,477 Found link https://files.pythonhosted.org/packages/f1/d4/7572f90f0da85e70bd129c15ed61ae301c5897b5e65d3156c602cf62fa1a/td2-1.0.3.tar.gz (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9), version: 1.0.3 2026-01-08T15:39:39,478 Skipping link: No binaries permitted for td2: https://files.pythonhosted.org/packages/c3/e0/adcb22d02f8881bdfce4a3c89003203115487946a2015cb5350d7c8884f3/TD2-1.0.5-py3-none-any.whl (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9) 2026-01-08T15:39:39,479 Found link https://files.pythonhosted.org/packages/d6/33/ef87f351e48b90f3fe892c982e721592fdbbf7b40d9bf34faf0a3a13198b/td2-1.0.5.tar.gz (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9), version: 1.0.5 2026-01-08T15:39:39,479 Skipping link: No binaries permitted for td2: https://files.pythonhosted.org/packages/ab/bc/6cb935774ae1b624faff92638a3422f0f12aeaf5f61ff820adbbd36464fc/td2-1.0.6-py3-none-any.whl (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9) 2026-01-08T15:39:39,480 Found link https://files.pythonhosted.org/packages/ef/4f/51dd7d1bd195d6e58d3efca71051ccd24219e3ad7c50098ecd63d9d83970/td2-1.0.6.tar.gz (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9), version: 1.0.6 2026-01-08T15:39:39,481 Skipping link: No binaries permitted for td2: https://files.pythonhosted.org/packages/91/09/e6b5b77a22ae4b1ba61570290521443af62c352ebf233e3cf759c273a28f/td2-1.0.7-py3-none-any.whl (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9) 2026-01-08T15:39:39,482 Found link https://files.pythonhosted.org/packages/4f/2d/a780cc5ead61cf0815ca9d553533cea7e9a78e439432b19c5b98700a70c6/td2-1.0.7.tar.gz (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9), version: 1.0.7 2026-01-08T15:39:39,483 Fetching project page and analyzing links: https://www.piwheels.org/simple/td2/ 2026-01-08T15:39:39,484 Getting page https://www.piwheels.org/simple/td2/ 2026-01-08T15:39:39,485 Found index url https://www.piwheels.org/simple 2026-01-08T15:39:39,660 Fetched page https://www.piwheels.org/simple/td2/ as text/html 2026-01-08T15:39:39,663 Skipping link: No binaries permitted for td2: https://archive1.piwheels.org/simple/td2/td2-1.0.6-py3-none-any.whl#sha256=036476c742d1f379694335713c2332f65ac1a3aff11da540ca2963a72e530f18 (from https://www.piwheels.org/simple/td2/) (requires-python:>=3.9, <3.13) 2026-01-08T15:39:39,664 Skipping link: No binaries permitted for td2: https://archive1.piwheels.org/simple/td2/td2-1.0.5-py3-none-any.whl#sha256=09e084f02acf615c53f50a29b00bf08971b806a3ab1eb60d1019227f7e92eb7c (from https://www.piwheels.org/simple/td2/) (requires-python:>=3.9, <3.13) 2026-01-08T15:39:39,664 Skipping link: No binaries permitted for td2: https://archive1.piwheels.org/simple/td2/td2-1.0.3-py3-none-any.whl#sha256=7f47b70ec5e865a83e73c173f75fff821f550fe092c77b1898bc9bc12e23872d (from https://www.piwheels.org/simple/td2/) (requires-python:>=3.9, <3.13) 2026-01-08T15:39:39,665 Skipping link: No binaries permitted for td2: https://archive1.piwheels.org/simple/td2/td2-1.0.2-py3-none-any.whl#sha256=94ae7a7132596b9a383262b643caa9c9353ca36fce313b3cd7ad471f5aae0607 (from https://www.piwheels.org/simple/td2/) (requires-python:>=3.9, <3.13) 2026-01-08T15:39:39,665 Skipping link: No binaries permitted for td2: https://archive1.piwheels.org/simple/td2/td2-1.0.1-py3-none-any.whl#sha256=8c2dbb85f1878bd9ee408cf25a898ede78c5fd23f195feebb2dfe45f6c4d2f71 (from https://www.piwheels.org/simple/td2/) (requires-python:>=3.9, <3.13) 2026-01-08T15:39:39,666 Skipping link: No binaries permitted for td2: https://archive1.piwheels.org/simple/td2/TD2-1.0.0-py3-none-any.whl#sha256=43bbd429280f386d4b2ece6c595361d46faf2e27fdad8718c138f6c6939b666a (from https://www.piwheels.org/simple/td2/) (requires-python:>=3.9, <3.13) 2026-01-08T15:39:39,666 Skipping link: No binaries permitted for td2: https://archive1.piwheels.org/simple/td2/TD2-0.1.0-py3-none-any.whl#sha256=4507f8bdeadbc4ccf6326f26068254f66be05e8371ee1f05b27e0f616670f199 (from https://www.piwheels.org/simple/td2/) (requires-python:>=3.8) 2026-01-08T15:39:39,667 Skipping link: not a file: https://www.piwheels.org/simple/td2/ 2026-01-08T15:39:39,668 Skipping link: not a file: https://pypi.org/simple/td2/ 2026-01-08T15:39:39,687 Given no hashes to check 1 links for project 'td2': discarding no candidates 2026-01-08T15:39:39,704 Collecting td2==1.0.7 2026-01-08T15:39:39,707 Created temporary directory: /tmp/pip-unpack-h26ymuqn 2026-01-08T15:39:39,913 Downloading td2-1.0.7.tar.gz (38 kB) 2026-01-08T15:39:40,038 Added td2==1.0.7 from https://files.pythonhosted.org/packages/4f/2d/a780cc5ead61cf0815ca9d553533cea7e9a78e439432b19c5b98700a70c6/td2-1.0.7.tar.gz to build tracker '/tmp/pip-build-tracker-iz_wsv4a' 2026-01-08T15:39:40,039 Running setup.py (path:/tmp/pip-wheel-l4_usz_r/td2_9d988f3d83b44cd5bfee1c005853e217/setup.py) egg_info for package td2 2026-01-08T15:39:40,040 Created temporary directory: /tmp/pip-pip-egg-info-3b2a9mhj 2026-01-08T15:39:40,041 Preparing metadata (setup.py): started 2026-01-08T15:39:40,042 Running command python setup.py egg_info 2026-01-08T15:39:40,923 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-01-08T15:39:40,923 !! 2026-01-08T15:39:40,924 ******************************************************************************** 2026-01-08T15:39:40,925 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-01-08T15:39:40,926 License :: OSI Approved :: MIT License 2026-01-08T15:39:40,927 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-01-08T15:39:40,927 ******************************************************************************** 2026-01-08T15:39:40,928 !! 2026-01-08T15:39:40,929 self._finalize_license_expression() 2026-01-08T15:39:40,954 running egg_info 2026-01-08T15:39:40,983 creating /tmp/pip-pip-egg-info-3b2a9mhj/TD2.egg-info 2026-01-08T15:39:40,984 writing /tmp/pip-pip-egg-info-3b2a9mhj/TD2.egg-info/PKG-INFO 2026-01-08T15:39:40,990 writing dependency_links to /tmp/pip-pip-egg-info-3b2a9mhj/TD2.egg-info/dependency_links.txt 2026-01-08T15:39:40,991 writing entry points to /tmp/pip-pip-egg-info-3b2a9mhj/TD2.egg-info/entry_points.txt 2026-01-08T15:39:40,994 writing requirements to /tmp/pip-pip-egg-info-3b2a9mhj/TD2.egg-info/requires.txt 2026-01-08T15:39:40,995 writing top-level names to /tmp/pip-pip-egg-info-3b2a9mhj/TD2.egg-info/top_level.txt 2026-01-08T15:39:40,997 writing manifest file '/tmp/pip-pip-egg-info-3b2a9mhj/TD2.egg-info/SOURCES.txt' 2026-01-08T15:39:41,106 reading manifest file '/tmp/pip-pip-egg-info-3b2a9mhj/TD2.egg-info/SOURCES.txt' 2026-01-08T15:39:41,107 reading manifest template 'MANIFEST.in' 2026-01-08T15:39:41,109 warning: no files found matching 'tables/table_*.json' 2026-01-08T15:39:41,109 adding license file 'LICENSE.txt' 2026-01-08T15:39:41,113 writing manifest file '/tmp/pip-pip-egg-info-3b2a9mhj/TD2.egg-info/SOURCES.txt' 2026-01-08T15:39:41,222 Preparing metadata (setup.py): finished with status 'done' 2026-01-08T15:39:41,225 Source in /tmp/pip-wheel-l4_usz_r/td2_9d988f3d83b44cd5bfee1c005853e217 has version 1.0.7, which satisfies requirement td2==1.0.7 from https://files.pythonhosted.org/packages/4f/2d/a780cc5ead61cf0815ca9d553533cea7e9a78e439432b19c5b98700a70c6/td2-1.0.7.tar.gz 2026-01-08T15:39:41,226 Removed td2==1.0.7 from https://files.pythonhosted.org/packages/4f/2d/a780cc5ead61cf0815ca9d553533cea7e9a78e439432b19c5b98700a70c6/td2-1.0.7.tar.gz from build tracker '/tmp/pip-build-tracker-iz_wsv4a' 2026-01-08T15:39:41,232 Created temporary directory: /tmp/pip-unpack-s4xw5ydo 2026-01-08T15:39:41,233 Building wheels for collected packages: td2 2026-01-08T15:39:41,237 Created temporary directory: /tmp/pip-wheel-znxjw7wq 2026-01-08T15:39:41,237 Building wheel for td2 (setup.py): started 2026-01-08T15:39:41,239 Destination directory: /tmp/pip-wheel-znxjw7wq 2026-01-08T15:39:41,240 Running command python setup.py bdist_wheel 2026-01-08T15:39:42,076 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-01-08T15:39:42,077 !! 2026-01-08T15:39:42,078 ******************************************************************************** 2026-01-08T15:39:42,078 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-01-08T15:39:42,079 License :: OSI Approved :: MIT License 2026-01-08T15:39:42,080 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-01-08T15:39:42,080 ******************************************************************************** 2026-01-08T15:39:42,081 !! 2026-01-08T15:39:42,082 self._finalize_license_expression() 2026-01-08T15:39:42,082 running bdist_wheel 2026-01-08T15:39:42,212 running build 2026-01-08T15:39:42,213 running build_py 2026-01-08T15:39:42,245 creating build/lib/tests 2026-01-08T15:39:42,247 copying tests/test_find_orfs_real.py -> build/lib/tests 2026-01-08T15:39:42,250 copying tests/ambiguous_codon_test.py -> build/lib/tests 2026-01-08T15:39:42,252 copying tests/partition_mane.py -> build/lib/tests 2026-01-08T15:39:42,254 copying tests/__init__.py -> build/lib/tests 2026-01-08T15:39:42,255 copying tests/visualize_benchmark.py -> build/lib/tests 2026-01-08T15:39:42,257 copying tests/visualize_mane_composition.py -> build/lib/tests 2026-01-08T15:39:42,259 copying tests/visualize_chess.py -> build/lib/tests 2026-01-08T15:39:42,261 copying tests/test_find_orfs.py -> build/lib/tests 2026-01-08T15:39:42,263 copying tests/compare_peps.py -> build/lib/tests 2026-01-08T15:39:42,266 copying tests/test_reverse_complement.py -> build/lib/tests 2026-01-08T15:39:42,267 copying tests/test_translate.py -> build/lib/tests 2026-01-08T15:39:42,269 copying tests/longorfs_low_memory.py -> build/lib/tests 2026-01-08T15:39:42,273 creating build/lib/TD2 2026-01-08T15:39:42,274 copying TD2/__init__.py -> build/lib/TD2 2026-01-08T15:39:42,275 copying TD2/translator.py -> build/lib/TD2 2026-01-08T15:39:42,277 copying TD2/Predict.py -> build/lib/TD2 2026-01-08T15:39:42,280 copying TD2/get_tables.py -> build/lib/TD2 2026-01-08T15:39:42,283 copying TD2/help.py -> build/lib/TD2 2026-01-08T15:39:42,285 copying TD2/LongOrfs.py -> build/lib/TD2 2026-01-08T15:39:42,288 creating build/lib/api 2026-01-08T15:39:42,289 copying api/__init__.py -> build/lib/api 2026-01-08T15:39:42,291 creating build/lib/tests/data 2026-01-08T15:39:42,292 copying tests/data/__init__.py -> build/lib/tests/data 2026-01-08T15:39:42,294 creating build/lib/TD2/tables 2026-01-08T15:39:42,295 copying TD2/tables/__init__.py -> build/lib/TD2/tables 2026-01-08T15:39:42,296 running egg_info 2026-01-08T15:39:42,323 writing TD2.egg-info/PKG-INFO 2026-01-08T15:39:42,329 writing dependency_links to TD2.egg-info/dependency_links.txt 2026-01-08T15:39:42,330 writing entry points to TD2.egg-info/entry_points.txt 2026-01-08T15:39:42,333 writing requirements to TD2.egg-info/requires.txt 2026-01-08T15:39:42,334 writing top-level names to TD2.egg-info/top_level.txt 2026-01-08T15:39:42,381 reading manifest file 'TD2.egg-info/SOURCES.txt' 2026-01-08T15:39:42,385 reading manifest template 'MANIFEST.in' 2026-01-08T15:39:42,386 warning: no files found matching 'tables/table_*.json' 2026-01-08T15:39:42,387 adding license file 'LICENSE.txt' 2026-01-08T15:39:42,391 writing manifest file 'TD2.egg-info/SOURCES.txt' 2026-01-08T15:39:42,406 copying TD2/tables/table_1.json -> build/lib/TD2/tables 2026-01-08T15:39:42,408 copying TD2/tables/table_2.json -> build/lib/TD2/tables 2026-01-08T15:39:42,410 copying TD2/tables/table_3.json -> build/lib/TD2/tables 2026-01-08T15:39:42,412 copying TD2/tables/table_4.json -> build/lib/TD2/tables 2026-01-08T15:39:42,415 copying TD2/tables/table_5.json -> build/lib/TD2/tables 2026-01-08T15:39:42,417 copying TD2/tables/table_6.json -> build/lib/TD2/tables 2026-01-08T15:39:42,419 copying TD2/tables/table_9.json -> build/lib/TD2/tables 2026-01-08T15:39:42,421 copying TD2/tables/table_10.json -> build/lib/TD2/tables 2026-01-08T15:39:42,423 copying TD2/tables/table_11.json -> build/lib/TD2/tables 2026-01-08T15:39:42,425 copying TD2/tables/table_12.json -> build/lib/TD2/tables 2026-01-08T15:39:42,427 copying TD2/tables/table_13.json -> build/lib/TD2/tables 2026-01-08T15:39:42,430 copying TD2/tables/table_14.json -> build/lib/TD2/tables 2026-01-08T15:39:42,432 copying TD2/tables/table_15.json -> build/lib/TD2/tables 2026-01-08T15:39:42,434 copying TD2/tables/table_16.json -> build/lib/TD2/tables 2026-01-08T15:39:42,436 copying TD2/tables/table_21.json -> build/lib/TD2/tables 2026-01-08T15:39:42,438 copying TD2/tables/table_22.json -> build/lib/TD2/tables 2026-01-08T15:39:42,440 copying TD2/tables/table_23.json -> build/lib/TD2/tables 2026-01-08T15:39:42,442 copying TD2/tables/table_24.json -> build/lib/TD2/tables 2026-01-08T15:39:42,445 copying TD2/tables/table_25.json -> build/lib/TD2/tables 2026-01-08T15:39:42,447 copying TD2/tables/table_26.json -> build/lib/TD2/tables 2026-01-08T15:39:42,449 copying TD2/tables/table_27.json -> build/lib/TD2/tables 2026-01-08T15:39:42,451 copying TD2/tables/table_28.json -> build/lib/TD2/tables 2026-01-08T15:39:42,454 copying TD2/tables/table_29.json -> build/lib/TD2/tables 2026-01-08T15:39:42,456 copying TD2/tables/table_30.json -> build/lib/TD2/tables 2026-01-08T15:39:42,458 copying TD2/tables/table_31.json -> build/lib/TD2/tables 2026-01-08T15:39:42,460 copying TD2/tables/table_33.json -> build/lib/TD2/tables 2026-01-08T15:39:42,501 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2026-01-08T15:39:42,502 !! 2026-01-08T15:39:42,503 ******************************************************************************** 2026-01-08T15:39:42,503 Please avoid running ``setup.py`` directly. 2026-01-08T15:39:42,504 Instead, use pypa/build, pypa/installer or other 2026-01-08T15:39:42,504 standards-based tools. 2026-01-08T15:39:42,505 This deprecation is overdue, please update your project and remove deprecated 2026-01-08T15:39:42,506 calls to avoid build errors in the future. 2026-01-08T15:39:42,507 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2026-01-08T15:39:42,507 ******************************************************************************** 2026-01-08T15:39:42,508 !! 2026-01-08T15:39:42,509 self.initialize_options() 2026-01-08T15:39:42,529 installing to build/bdist.linux-armv7l/wheel 2026-01-08T15:39:42,530 running install 2026-01-08T15:39:42,554 running install_lib 2026-01-08T15:39:42,581 creating build/bdist.linux-armv7l/wheel 2026-01-08T15:39:42,583 creating build/bdist.linux-armv7l/wheel/tests 2026-01-08T15:39:42,585 copying build/lib/tests/test_find_orfs_real.py -> build/bdist.linux-armv7l/wheel/./tests 2026-01-08T15:39:42,587 copying build/lib/tests/ambiguous_codon_test.py -> build/bdist.linux-armv7l/wheel/./tests 2026-01-08T15:39:42,589 copying build/lib/tests/partition_mane.py -> build/bdist.linux-armv7l/wheel/./tests 2026-01-08T15:39:42,591 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./tests 2026-01-08T15:39:42,593 copying build/lib/tests/visualize_benchmark.py -> build/bdist.linux-armv7l/wheel/./tests 2026-01-08T15:39:42,595 copying build/lib/tests/visualize_mane_composition.py -> build/bdist.linux-armv7l/wheel/./tests 2026-01-08T15:39:42,596 copying build/lib/tests/visualize_chess.py -> build/bdist.linux-armv7l/wheel/./tests 2026-01-08T15:39:42,599 creating build/bdist.linux-armv7l/wheel/tests/data 2026-01-08T15:39:42,600 copying build/lib/tests/data/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/data 2026-01-08T15:39:42,602 copying build/lib/tests/test_find_orfs.py -> build/bdist.linux-armv7l/wheel/./tests 2026-01-08T15:39:42,604 copying build/lib/tests/compare_peps.py -> build/bdist.linux-armv7l/wheel/./tests 2026-01-08T15:39:42,606 copying build/lib/tests/test_reverse_complement.py -> build/bdist.linux-armv7l/wheel/./tests 2026-01-08T15:39:42,608 copying build/lib/tests/test_translate.py -> build/bdist.linux-armv7l/wheel/./tests 2026-01-08T15:39:42,609 copying build/lib/tests/longorfs_low_memory.py -> build/bdist.linux-armv7l/wheel/./tests 2026-01-08T15:39:42,612 creating build/bdist.linux-armv7l/wheel/TD2 2026-01-08T15:39:42,613 copying build/lib/TD2/__init__.py -> build/bdist.linux-armv7l/wheel/./TD2 2026-01-08T15:39:42,615 copying build/lib/TD2/translator.py -> build/bdist.linux-armv7l/wheel/./TD2 2026-01-08T15:39:42,617 copying build/lib/TD2/Predict.py -> build/bdist.linux-armv7l/wheel/./TD2 2026-01-08T15:39:42,620 copying build/lib/TD2/get_tables.py -> build/bdist.linux-armv7l/wheel/./TD2 2026-01-08T15:39:42,623 creating build/bdist.linux-armv7l/wheel/TD2/tables 2026-01-08T15:39:42,624 copying build/lib/TD2/tables/table_26.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-08T15:39:42,626 copying build/lib/TD2/tables/table_29.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-08T15:39:42,628 copying build/lib/TD2/tables/table_21.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-08T15:39:42,630 copying build/lib/TD2/tables/table_3.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-08T15:39:42,631 copying build/lib/TD2/tables/__init__.py -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-08T15:39:42,633 copying build/lib/TD2/tables/table_11.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-08T15:39:42,635 copying build/lib/TD2/tables/table_31.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-08T15:39:42,636 copying build/lib/TD2/tables/table_25.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-08T15:39:42,638 copying build/lib/TD2/tables/table_13.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-08T15:39:42,640 copying build/lib/TD2/tables/table_12.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-08T15:39:42,642 copying build/lib/TD2/tables/table_24.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-08T15:39:42,644 copying build/lib/TD2/tables/table_33.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-08T15:39:42,645 copying build/lib/TD2/tables/table_10.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-08T15:39:42,647 copying build/lib/TD2/tables/table_27.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-08T15:39:42,649 copying build/lib/TD2/tables/table_1.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-08T15:39:42,651 copying build/lib/TD2/tables/table_23.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-08T15:39:42,653 copying build/lib/TD2/tables/table_14.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-08T15:39:42,655 copying build/lib/TD2/tables/table_6.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-08T15:39:42,657 copying build/lib/TD2/tables/table_16.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-08T15:39:42,659 copying build/lib/TD2/tables/table_22.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-08T15:39:42,660 copying build/lib/TD2/tables/table_5.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-08T15:39:42,662 copying build/lib/TD2/tables/table_9.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-08T15:39:42,664 copying build/lib/TD2/tables/table_2.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-08T15:39:42,666 copying build/lib/TD2/tables/table_28.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-08T15:39:42,668 copying build/lib/TD2/tables/table_15.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-08T15:39:42,670 copying build/lib/TD2/tables/table_30.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-08T15:39:42,672 copying build/lib/TD2/tables/table_4.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-08T15:39:42,674 copying build/lib/TD2/help.py -> build/bdist.linux-armv7l/wheel/./TD2 2026-01-08T15:39:42,675 copying build/lib/TD2/LongOrfs.py -> build/bdist.linux-armv7l/wheel/./TD2 2026-01-08T15:39:42,678 creating build/bdist.linux-armv7l/wheel/api 2026-01-08T15:39:42,679 copying build/lib/api/__init__.py -> build/bdist.linux-armv7l/wheel/./api 2026-01-08T15:39:42,681 running install_egg_info 2026-01-08T15:39:42,715 Copying TD2.egg-info to build/bdist.linux-armv7l/wheel/./TD2-1.0.7-py3.11.egg-info 2026-01-08T15:39:42,726 running install_scripts 2026-01-08T15:39:42,739 creating build/bdist.linux-armv7l/wheel/td2-1.0.7.dist-info/WHEEL 2026-01-08T15:39:42,741 creating '/tmp/pip-wheel-znxjw7wq/td2-1.0.7-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-01-08T15:39:42,745 adding 'TD2/LongOrfs.py' 2026-01-08T15:39:42,749 adding 'TD2/Predict.py' 2026-01-08T15:39:42,750 adding 'TD2/__init__.py' 2026-01-08T15:39:42,752 adding 'TD2/get_tables.py' 2026-01-08T15:39:42,753 adding 'TD2/help.py' 2026-01-08T15:39:42,755 adding 'TD2/translator.py' 2026-01-08T15:39:42,757 adding 'TD2/tables/__init__.py' 2026-01-08T15:39:42,758 adding 'TD2/tables/table_1.json' 2026-01-08T15:39:42,759 adding 'TD2/tables/table_10.json' 2026-01-08T15:39:42,761 adding 'TD2/tables/table_11.json' 2026-01-08T15:39:42,762 adding 'TD2/tables/table_12.json' 2026-01-08T15:39:42,764 adding 'TD2/tables/table_13.json' 2026-01-08T15:39:42,765 adding 'TD2/tables/table_14.json' 2026-01-08T15:39:42,766 adding 'TD2/tables/table_15.json' 2026-01-08T15:39:42,768 adding 'TD2/tables/table_16.json' 2026-01-08T15:39:42,769 adding 'TD2/tables/table_2.json' 2026-01-08T15:39:42,771 adding 'TD2/tables/table_21.json' 2026-01-08T15:39:42,772 adding 'TD2/tables/table_22.json' 2026-01-08T15:39:42,773 adding 'TD2/tables/table_23.json' 2026-01-08T15:39:42,775 adding 'TD2/tables/table_24.json' 2026-01-08T15:39:42,776 adding 'TD2/tables/table_25.json' 2026-01-08T15:39:42,777 adding 'TD2/tables/table_26.json' 2026-01-08T15:39:42,779 adding 'TD2/tables/table_27.json' 2026-01-08T15:39:42,780 adding 'TD2/tables/table_28.json' 2026-01-08T15:39:42,782 adding 'TD2/tables/table_29.json' 2026-01-08T15:39:42,783 adding 'TD2/tables/table_3.json' 2026-01-08T15:39:42,784 adding 'TD2/tables/table_30.json' 2026-01-08T15:39:42,786 adding 'TD2/tables/table_31.json' 2026-01-08T15:39:42,787 adding 'TD2/tables/table_33.json' 2026-01-08T15:39:42,789 adding 'TD2/tables/table_4.json' 2026-01-08T15:39:42,790 adding 'TD2/tables/table_5.json' 2026-01-08T15:39:42,792 adding 'TD2/tables/table_6.json' 2026-01-08T15:39:42,793 adding 'TD2/tables/table_9.json' 2026-01-08T15:39:42,795 adding 'api/__init__.py' 2026-01-08T15:39:42,797 adding 'td2-1.0.7.dist-info/licenses/LICENSE.txt' 2026-01-08T15:39:42,799 adding 'tests/__init__.py' 2026-01-08T15:39:42,800 adding 'tests/ambiguous_codon_test.py' 2026-01-08T15:39:42,802 adding 'tests/compare_peps.py' 2026-01-08T15:39:42,804 adding 'tests/longorfs_low_memory.py' 2026-01-08T15:39:42,806 adding 'tests/partition_mane.py' 2026-01-08T15:39:42,807 adding 'tests/test_find_orfs.py' 2026-01-08T15:39:42,810 adding 'tests/test_find_orfs_real.py' 2026-01-08T15:39:42,811 adding 'tests/test_reverse_complement.py' 2026-01-08T15:39:42,812 adding 'tests/test_translate.py' 2026-01-08T15:39:42,813 adding 'tests/visualize_benchmark.py' 2026-01-08T15:39:42,815 adding 'tests/visualize_chess.py' 2026-01-08T15:39:42,816 adding 'tests/visualize_mane_composition.py' 2026-01-08T15:39:42,818 adding 'tests/data/__init__.py' 2026-01-08T15:39:42,819 adding 'td2-1.0.7.dist-info/METADATA' 2026-01-08T15:39:42,820 adding 'td2-1.0.7.dist-info/WHEEL' 2026-01-08T15:39:42,821 adding 'td2-1.0.7.dist-info/entry_points.txt' 2026-01-08T15:39:42,821 adding 'td2-1.0.7.dist-info/top_level.txt' 2026-01-08T15:39:42,823 adding 'td2-1.0.7.dist-info/RECORD' 2026-01-08T15:39:42,825 removing build/bdist.linux-armv7l/wheel 2026-01-08T15:39:42,948 Building wheel for td2 (setup.py): finished with status 'done' 2026-01-08T15:39:42,951 Created wheel for td2: filename=td2-1.0.7-py3-none-any.whl size=55503 sha256=3c6f782386166cea654790740affad1c75ed2897d476e6b5057d41cc1ee40544 2026-01-08T15:39:42,952 Stored in directory: /tmp/pip-ephem-wheel-cache-yztuzuoz/wheels/83/68/ee/4a8b545d94dbcd6faf40a21559c19b59e1186970476a292575 2026-01-08T15:39:42,964 Successfully built td2 2026-01-08T15:39:42,968 Removed build tracker: '/tmp/pip-build-tracker-iz_wsv4a'