2026-01-10T13:22:05,848 Created temporary directory: /tmp/pip-ephem-wheel-cache-bx_uenoh 2026-01-10T13:22:05,850 Created temporary directory: /tmp/pip-build-tracker-8pkthylz 2026-01-10T13:22:05,850 Initialized build tracking at /tmp/pip-build-tracker-8pkthylz 2026-01-10T13:22:05,851 Created build tracker: /tmp/pip-build-tracker-8pkthylz 2026-01-10T13:22:05,851 Entered build tracker: /tmp/pip-build-tracker-8pkthylz 2026-01-10T13:22:05,852 Created temporary directory: /tmp/pip-wheel-4d1qo0kl 2026-01-10T13:22:05,855 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-01-10T13:22:05,858 Created temporary directory: /tmp/pip-ephem-wheel-cache-bc626qdr 2026-01-10T13:22:05,879 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-01-10T13:22:05,883 2 location(s) to search for versions of lobster-ai: 2026-01-10T13:22:05,883 * https://pypi.org/simple/lobster-ai/ 2026-01-10T13:22:05,883 * https://www.piwheels.org/simple/lobster-ai/ 2026-01-10T13:22:05,884 Fetching project page and analyzing links: https://pypi.org/simple/lobster-ai/ 2026-01-10T13:22:05,884 Getting page https://pypi.org/simple/lobster-ai/ 2026-01-10T13:22:05,886 Found index url https://pypi.org/simple 2026-01-10T13:22:06,104 Fetched page https://pypi.org/simple/lobster-ai/ as application/vnd.pypi.simple.v1+json 2026-01-10T13:22:06,112 Skipping link: No binaries permitted for lobster-ai: 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0.4.0.8 2026-01-10T13:22:06,116 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/82/31/78340295ff44b67ccc4c5caaa6719063d7474604cd61fa9262fc35d4d956/lobster_ai-0.4.0.9-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-10T13:22:06,117 Found link https://files.pythonhosted.org/packages/6f/e1/d7ec868a638125f79b3f450e1ecb1b9e75ed7ba1887b51849531a4b362dc/lobster_ai-0.4.0.9.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.0.9 2026-01-10T13:22:06,118 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/34/e3/df793c9c964fd14f0e798a2b126653fe41689d96f69c0f667eaeaec3b87e/lobster_ai-0.4.1.1-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-10T13:22:06,119 Found link 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0.4.2.4 2026-01-10T13:22:06,139 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/af/ba/3a179f4b7db57c5a74fabcbf9b71a7fe0db9c538e038767d0cf231ef98fe/lobster_ai-0.4.2.5-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-10T13:22:06,140 Found link https://files.pythonhosted.org/packages/c0/61/bddad144d7c508edcbdd23d4e770c213ffbb746673f863f9934b57960a5b/lobster_ai-0.4.2.5.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.2.5 2026-01-10T13:22:06,140 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/09/0f/0f7b04c2fad699e21b22c900d8aee8204046963657ef7fab06310d9a46dc/lobster_ai-0.4.2.6-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-10T13:22:06,141 Found link 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https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-10T13:22:06,145 Found link https://files.pythonhosted.org/packages/40/f6/c65b9d365c84019a59aa9148867e20fa9550d570fdcb28783dcb68535ac3/lobster_ai-0.4.2.8.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.2.8 2026-01-10T13:22:06,146 Skipping link: No binaries permitted for lobster-ai: https://files.pythonhosted.org/packages/bd/b5/0ea317480c6014935ba7b1fb20e1b9a4614cc369b9d1aa7e6b94ae22831c/lobster_ai-0.4.2.9-py3-none-any.whl (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-10T13:22:06,146 Found link https://files.pythonhosted.org/packages/e6/19/f1a3b004fa81d5cb134f8d6f7174e074c75be96f8e39f96dafe162c90786/lobster_ai-0.4.2.9.tar.gz (from https://pypi.org/simple/lobster-ai/) (requires-python:>=3.11), version: 0.4.2.9 2026-01-10T13:22:06,147 Fetching project page and analyzing links: https://www.piwheels.org/simple/lobster-ai/ 2026-01-10T13:22:06,148 Getting 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https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.1.3-py3-none-any.whl#sha256=80e2e1901c9acbae8f29a51305af7fc23762871021f86168660c0098154ea64d (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-10T13:22:06,322 Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.1.2-py3-none-any.whl#sha256=7f38e7703c88c0c7fe4811c9c7b04da6469ca264d3e261e794b0a59376ba4d0e (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-10T13:22:06,323 Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.1.1-py3-none-any.whl#sha256=d30d1083ded2235ea62f728b72c55b58d61c4164f9913d1996d68c451dac3c4d (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-10T13:22:06,323 Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.0.9-py3-none-any.whl#sha256=48a46075806c2941d705fa7eb0da81c1c162cc4b62b1bc22b578315363b4de75 (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-10T13:22:06,324 Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.0.8-py3-none-any.whl#sha256=a66d81b7558824d17ab891c3a592ceb8ee53492f413d9cfdd89bdecd8fd1de85 (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-10T13:22:06,325 Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.0.7-py3-none-any.whl#sha256=cbee755d3f7ac5e1cd5b65bfe0309faa4acba90c1a6a1b32036010c45f0868d9 (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-10T13:22:06,326 Skipping link: not a file: https://www.piwheels.org/simple/lobster-ai/ 2026-01-10T13:22:06,326 Skipping link: not a file: https://pypi.org/simple/lobster-ai/ 2026-01-10T13:22:06,348 Given no hashes to check 1 links for project 'lobster-ai': discarding no candidates 2026-01-10T13:22:06,366 Collecting lobster-ai==0.4.2.9 2026-01-10T13:22:06,368 Created temporary directory: /tmp/pip-unpack-pmkqqnkd 2026-01-10T13:22:06,605 Downloading lobster_ai-0.4.2.9.tar.gz (1.2 MB) 2026-01-10T13:22:07,571 Added lobster-ai==0.4.2.9 from https://files.pythonhosted.org/packages/e6/19/f1a3b004fa81d5cb134f8d6f7174e074c75be96f8e39f96dafe162c90786/lobster_ai-0.4.2.9.tar.gz to build tracker '/tmp/pip-build-tracker-8pkthylz' 2026-01-10T13:22:07,580 Created temporary directory: /tmp/pip-build-env-vsnbt3zg 2026-01-10T13:22:07,584 Installing build dependencies: started 2026-01-10T13:22:07,585 Running command pip subprocess to install build dependencies 2026-01-10T13:22:08,706 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-01-10T13:22:09,279 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-01-10T13:22:09,302 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-01-10T13:22:11,029 Collecting setuptools>=65.0 2026-01-10T13:22:11,137 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2026-01-10T13:22:11,403 Collecting wheel 2026-01-10T13:22:11,422 Using cached https://www.piwheels.org/simple/wheel/wheel-0.45.1-py3-none-any.whl (72 kB) 2026-01-10T13:22:14,435 Installing collected packages: wheel, setuptools 2026-01-10T13:22:14,680 Creating /tmp/pip-build-env-vsnbt3zg/overlay/local/bin 2026-01-10T13:22:14,682 changing mode of /tmp/pip-build-env-vsnbt3zg/overlay/local/bin/wheel to 755 2026-01-10T13:22:18,337 Successfully installed setuptools-80.9.0 wheel-0.45.1 2026-01-10T13:22:18,606 Installing build dependencies: finished with status 'done' 2026-01-10T13:22:18,612 Getting requirements to build wheel: started 2026-01-10T13:22:18,614 Running command Getting requirements to build wheel 2026-01-10T13:22:19,285 /tmp/pip-build-env-vsnbt3zg/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `license` overwritten by `pyproject.toml` 2026-01-10T13:22:19,285 corresp(dist, value, root_dir) 2026-01-10T13:22:19,286 /tmp/pip-build-env-vsnbt3zg/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2026-01-10T13:22:19,286 corresp(dist, value, root_dir) 2026-01-10T13:22:19,287 /tmp/pip-build-env-vsnbt3zg/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `extras_require` overwritten in `pyproject.toml` (optional-dependencies) 2026-01-10T13:22:19,288 corresp(dist, value, root_dir) 2026-01-10T13:22:19,392 running egg_info 2026-01-10T13:22:19,399 writing lobster_ai.egg-info/PKG-INFO 2026-01-10T13:22:19,430 writing dependency_links to lobster_ai.egg-info/dependency_links.txt 2026-01-10T13:22:19,432 writing entry points to lobster_ai.egg-info/entry_points.txt 2026-01-10T13:22:19,451 writing requirements to lobster_ai.egg-info/requires.txt 2026-01-10T13:22:19,453 writing top-level names to lobster_ai.egg-info/top_level.txt 2026-01-10T13:22:19,601 reading manifest file 'lobster_ai.egg-info/SOURCES.txt' 2026-01-10T13:22:19,617 adding license file 'LICENSE' 2026-01-10T13:22:19,631 writing manifest file 'lobster_ai.egg-info/SOURCES.txt' 2026-01-10T13:22:19,729 Getting requirements to build wheel: finished with status 'done' 2026-01-10T13:22:19,733 Created temporary directory: /tmp/pip-modern-metadata-jv3wn1lq 2026-01-10T13:22:19,735 Preparing metadata (pyproject.toml): started 2026-01-10T13:22:19,736 Running command Preparing metadata (pyproject.toml) 2026-01-10T13:22:20,383 /tmp/pip-build-env-vsnbt3zg/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `license` overwritten by `pyproject.toml` 2026-01-10T13:22:20,384 corresp(dist, value, root_dir) 2026-01-10T13:22:20,384 /tmp/pip-build-env-vsnbt3zg/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2026-01-10T13:22:20,385 corresp(dist, value, root_dir) 2026-01-10T13:22:20,386 /tmp/pip-build-env-vsnbt3zg/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `extras_require` overwritten in `pyproject.toml` (optional-dependencies) 2026-01-10T13:22:20,387 corresp(dist, value, root_dir) 2026-01-10T13:22:20,488 running dist_info 2026-01-10T13:22:20,500 creating /tmp/pip-modern-metadata-jv3wn1lq/lobster_ai.egg-info 2026-01-10T13:22:20,501 writing /tmp/pip-modern-metadata-jv3wn1lq/lobster_ai.egg-info/PKG-INFO 2026-01-10T13:22:20,532 writing dependency_links to /tmp/pip-modern-metadata-jv3wn1lq/lobster_ai.egg-info/dependency_links.txt 2026-01-10T13:22:20,533 writing entry points to /tmp/pip-modern-metadata-jv3wn1lq/lobster_ai.egg-info/entry_points.txt 2026-01-10T13:22:20,553 writing requirements to /tmp/pip-modern-metadata-jv3wn1lq/lobster_ai.egg-info/requires.txt 2026-01-10T13:22:20,554 writing top-level names to /tmp/pip-modern-metadata-jv3wn1lq/lobster_ai.egg-info/top_level.txt 2026-01-10T13:22:20,556 writing manifest file '/tmp/pip-modern-metadata-jv3wn1lq/lobster_ai.egg-info/SOURCES.txt' 2026-01-10T13:22:20,691 reading manifest file '/tmp/pip-modern-metadata-jv3wn1lq/lobster_ai.egg-info/SOURCES.txt' 2026-01-10T13:22:20,693 adding license file 'LICENSE' 2026-01-10T13:22:20,704 writing manifest file '/tmp/pip-modern-metadata-jv3wn1lq/lobster_ai.egg-info/SOURCES.txt' 2026-01-10T13:22:20,705 creating '/tmp/pip-modern-metadata-jv3wn1lq/lobster_ai-0.4.2.9.dist-info' 2026-01-10T13:22:20,833 Preparing metadata (pyproject.toml): finished with status 'done' 2026-01-10T13:22:20,840 Source in /tmp/pip-wheel-4d1qo0kl/lobster-ai_44fdccbbab954ce5861aaa92dbcc3e1f has version 0.4.2.9, which satisfies requirement lobster-ai==0.4.2.9 from https://files.pythonhosted.org/packages/e6/19/f1a3b004fa81d5cb134f8d6f7174e074c75be96f8e39f96dafe162c90786/lobster_ai-0.4.2.9.tar.gz 2026-01-10T13:22:20,841 Removed lobster-ai==0.4.2.9 from https://files.pythonhosted.org/packages/e6/19/f1a3b004fa81d5cb134f8d6f7174e074c75be96f8e39f96dafe162c90786/lobster_ai-0.4.2.9.tar.gz from build tracker '/tmp/pip-build-tracker-8pkthylz' 2026-01-10T13:22:20,851 Created temporary directory: /tmp/pip-unpack-5m84vzci 2026-01-10T13:22:20,852 Building wheels for collected packages: lobster-ai 2026-01-10T13:22:20,856 Created temporary directory: /tmp/pip-wheel-a9mxao2b 2026-01-10T13:22:20,857 Destination directory: /tmp/pip-wheel-a9mxao2b 2026-01-10T13:22:20,859 Building wheel for lobster-ai (pyproject.toml): started 2026-01-10T13:22:20,860 Running command Building wheel for lobster-ai (pyproject.toml) 2026-01-10T13:22:21,482 /tmp/pip-build-env-vsnbt3zg/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `license` overwritten by `pyproject.toml` 2026-01-10T13:22:21,482 corresp(dist, value, root_dir) 2026-01-10T13:22:21,483 /tmp/pip-build-env-vsnbt3zg/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2026-01-10T13:22:21,483 corresp(dist, value, root_dir) 2026-01-10T13:22:21,484 /tmp/pip-build-env-vsnbt3zg/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `extras_require` overwritten in `pyproject.toml` (optional-dependencies) 2026-01-10T13:22:21,484 corresp(dist, value, root_dir) 2026-01-10T13:22:21,576 running bdist_wheel 2026-01-10T13:22:21,598 running build 2026-01-10T13:22:21,599 running build_py 2026-01-10T13:22:21,606 creating build/lib/lobster 2026-01-10T13:22:21,608 copying lobster/version.py -> build/lib/lobster 2026-01-10T13:22:21,611 copying lobster/cli.py -> build/lib/lobster 2026-01-10T13:22:21,664 copying lobster/main.py -> build/lib/lobster 2026-01-10T13:22:21,666 copying lobster/__main__.py -> build/lib/lobster 2026-01-10T13:22:21,668 copying lobster/_version.py -> build/lib/lobster 2026-01-10T13:22:21,671 creating build/lib/lobster/ui 2026-01-10T13:22:21,672 copying lobster/ui/__init__.py -> build/lib/lobster/ui 2026-01-10T13:22:21,675 copying lobster/ui/commands.py -> build/lib/lobster/ui 2026-01-10T13:22:21,677 copying lobster/ui/console_manager.py -> build/lib/lobster/ui 2026-01-10T13:22:21,681 copying lobster/ui/live_dashboard.py -> build/lib/lobster/ui 2026-01-10T13:22:21,684 copying lobster/ui/os_app.py -> build/lib/lobster/ui 2026-01-10T13:22:21,687 copying lobster/ui/progress_manager.py -> build/lib/lobster/ui 2026-01-10T13:22:21,690 copying lobster/ui/themes.py -> build/lib/lobster/ui 2026-01-10T13:22:21,693 creating build/lib/lobster/services 2026-01-10T13:22:21,694 copying lobster/services/__init__.py -> build/lib/lobster/services 2026-01-10T13:22:21,697 creating build/lib/lobster/config 2026-01-10T13:22:21,698 copying lobster/config/ollama_service.py -> build/lib/lobster/config 2026-01-10T13:22:21,701 copying lobster/config/model_service.py -> build/lib/lobster/config 2026-01-10T13:22:21,703 copying lobster/config/llm_factory.py -> build/lib/lobster/config 2026-01-10T13:22:21,706 copying lobster/config/provider_setup.py -> build/lib/lobster/config 2026-01-10T13:22:21,709 copying lobster/config/__init__.py -> build/lib/lobster/config 2026-01-10T13:22:21,711 copying lobster/config/global_config.py -> build/lib/lobster/config 2026-01-10T13:22:21,713 copying lobster/config/version_check.py -> build/lib/lobster/config 2026-01-10T13:22:21,716 copying lobster/config/subscription_tiers.py -> build/lib/lobster/config 2026-01-10T13:22:21,718 copying lobster/config/constants.py -> build/lib/lobster/config 2026-01-10T13:22:21,720 copying lobster/config/settings.py -> build/lib/lobster/config 2026-01-10T13:22:21,722 copying lobster/config/agent_config.py -> build/lib/lobster/config 2026-01-10T13:22:21,725 copying lobster/config/config_manager.py -> build/lib/lobster/config 2026-01-10T13:22:21,728 copying lobster/config/workspace_config.py -> build/lib/lobster/config 2026-01-10T13:22:21,730 copying lobster/config/supervisor_config.py -> build/lib/lobster/config 2026-01-10T13:22:21,733 copying lobster/config/ssl_setup.py -> build/lib/lobster/config 2026-01-10T13:22:21,736 copying lobster/config/base_config.py -> build/lib/lobster/config 2026-01-10T13:22:21,738 copying lobster/config/agent_registry.py -> build/lib/lobster/config 2026-01-10T13:22:21,740 copying lobster/config/agent_capabilities.py -> build/lib/lobster/config 2026-01-10T13:22:21,743 creating build/lib/lobster/cli_internal 2026-01-10T13:22:21,745 copying lobster/cli_internal/__init__.py -> build/lib/lobster/cli_internal 2026-01-10T13:22:21,747 creating build/lib/lobster/tools 2026-01-10T13:22:21,748 copying lobster/tools/workspace_tool.py -> build/lib/lobster/tools 2026-01-10T13:22:21,753 copying lobster/tools/todo_tools.py -> build/lib/lobster/tools 2026-01-10T13:22:21,756 copying lobster/tools/__init__.py -> build/lib/lobster/tools 2026-01-10T13:22:21,757 copying lobster/tools/handoff_tool.py -> build/lib/lobster/tools 2026-01-10T13:22:21,760 copying lobster/tools/enhanced_handoff_tool.py -> build/lib/lobster/tools 2026-01-10T13:22:21,763 copying lobster/tools/geo_parser.py -> build/lib/lobster/tools 2026-01-10T13:22:21,765 copying lobster/tools/custom_code_tool.py -> build/lib/lobster/tools 2026-01-10T13:22:21,767 copying lobster/tools/gpu_detector.py -> build/lib/lobster/tools 2026-01-10T13:22:21,770 copying lobster/tools/workflow_tracker.py -> build/lib/lobster/tools 2026-01-10T13:22:21,773 copying lobster/tools/download_orchestrator.py -> build/lib/lobster/tools 2026-01-10T13:22:21,776 copying lobster/tools/expert_handoff_patterns.py -> build/lib/lobster/tools 2026-01-10T13:22:21,778 copying lobster/tools/geo_downloader.py -> build/lib/lobster/tools 2026-01-10T13:22:21,781 copying lobster/tools/rate_limiter.py -> build/lib/lobster/tools 2026-01-10T13:22:21,784 copying lobster/tools/expert_handoff_manager.py -> build/lib/lobster/tools 2026-01-10T13:22:21,787 copying lobster/tools/pipeline_strategy.py -> build/lib/lobster/tools 2026-01-10T13:22:21,789 copying lobster/tools/url_transforms.py -> build/lib/lobster/tools 2026-01-10T13:22:21,792 creating build/lib/lobster/utils 2026-01-10T13:22:21,793 copying lobster/utils/system.py -> build/lib/lobster/utils 2026-01-10T13:22:21,796 copying lobster/utils/callbacks.py -> build/lib/lobster/utils 2026-01-10T13:22:21,800 copying lobster/utils/__init__.py -> build/lib/lobster/utils 2026-01-10T13:22:21,802 copying lobster/utils/error_handlers.py -> build/lib/lobster/utils 2026-01-10T13:22:21,805 copying lobster/utils/progress_wrapper.py -> build/lib/lobster/utils 2026-01-10T13:22:21,807 copying lobster/utils/deviance.py -> build/lib/lobster/utils 2026-01-10T13:22:21,810 copying lobster/utils/ssl_utils.py -> build/lib/lobster/utils 2026-01-10T13:22:21,812 copying lobster/utils/json_extractor.py -> build/lib/lobster/utils 2026-01-10T13:22:21,814 copying lobster/utils/file_analyzer.py -> build/lib/lobster/utils 2026-01-10T13:22:21,819 copying lobster/utils/file_naming.py -> build/lib/lobster/utils 2026-01-10T13:22:21,822 copying lobster/utils/logger.py -> build/lib/lobster/utils 2026-01-10T13:22:21,825 creating build/lib/lobster/core 2026-01-10T13:22:21,827 copying lobster/core/provenance.py -> build/lib/lobster/core 2026-01-10T13:22:21,829 copying lobster/core/plot_manager.py -> build/lib/lobster/core 2026-01-10T13:22:21,832 copying lobster/core/publication_queue.py -> build/lib/lobster/core 2026-01-10T13:22:21,835 copying lobster/core/__init__.py -> build/lib/lobster/core 2026-01-10T13:22:21,837 copying lobster/core/client.py -> build/lib/lobster/core 2026-01-10T13:22:21,841 copying lobster/core/license_manager.py -> build/lib/lobster/core 2026-01-10T13:22:21,845 copying lobster/core/exceptions.py -> build/lib/lobster/core 2026-01-10T13:22:21,847 copying lobster/core/queue_storage.py -> build/lib/lobster/core 2026-01-10T13:22:21,850 copying lobster/core/ris_parser.py -> build/lib/lobster/core 2026-01-10T13:22:21,852 copying lobster/core/notebook_validator.py -> build/lib/lobster/core 2026-01-10T13:22:21,855 copying lobster/core/data_manager_v2.py -> build/lib/lobster/core 2026-01-10T13:22:21,861 copying lobster/core/archive_utils.py -> build/lib/lobster/core 2026-01-10T13:22:21,864 copying lobster/core/workspace.py -> build/lib/lobster/core 2026-01-10T13:22:21,866 copying lobster/core/download_queue.py -> build/lib/lobster/core 2026-01-10T13:22:21,869 copying lobster/core/notebook_exporter.py -> build/lib/lobster/core 2026-01-10T13:22:21,873 copying lobster/core/ir_coverage.py -> build/lib/lobster/core 2026-01-10T13:22:21,876 copying lobster/core/plugin_loader.py -> build/lib/lobster/core 2026-01-10T13:22:21,879 copying lobster/core/analysis_ir.py -> build/lib/lobster/core 2026-01-10T13:22:21,882 copying lobster/core/config_resolver.py -> build/lib/lobster/core 2026-01-10T13:22:21,886 copying lobster/core/notebook_executor.py -> build/lib/lobster/core 2026-01-10T13:22:21,889 copying lobster/core/component_registry.py -> build/lib/lobster/core 2026-01-10T13:22:21,893 creating build/lib/lobster/lobster_cloud 2026-01-10T13:22:21,895 copying lobster/lobster_cloud/__init__.py -> build/lib/lobster/lobster_cloud 2026-01-10T13:22:21,898 copying lobster/lobster_cloud/client.py -> build/lib/lobster/lobster_cloud 2026-01-10T13:22:21,901 creating build/lib/lobster/agents 2026-01-10T13:22:21,903 copying lobster/agents/visualization_expert.py -> build/lib/lobster/agents 2026-01-10T13:22:21,907 copying lobster/agents/state.py -> build/lib/lobster/agents 2026-01-10T13:22:21,910 copying lobster/agents/research_agent.py -> build/lib/lobster/agents 2026-01-10T13:22:21,915 copying lobster/agents/__init__.py -> build/lib/lobster/agents 2026-01-10T13:22:21,917 copying lobster/agents/draw_graph.py -> build/lib/lobster/agents 2026-01-10T13:22:21,920 copying lobster/agents/data_expert_assistant.py -> build/lib/lobster/agents 2026-01-10T13:22:21,923 copying lobster/agents/supervisor.py -> build/lib/lobster/agents 2026-01-10T13:22:21,926 copying lobster/agents/graph.py -> build/lib/lobster/agents 2026-01-10T13:22:21,929 copying lobster/agents/data_expert.py -> build/lib/lobster/agents 2026-01-10T13:22:21,934 creating build/lib/lobster/ui/formatters 2026-01-10T13:22:21,935 copying lobster/ui/formatters/__init__.py -> build/lib/lobster/ui/formatters 2026-01-10T13:22:21,938 creating build/lib/lobster/ui/services 2026-01-10T13:22:21,939 copying lobster/ui/services/error_service.py -> build/lib/lobster/ui/services 2026-01-10T13:22:21,942 copying lobster/ui/services/__init__.py -> build/lib/lobster/ui/services 2026-01-10T13:22:21,944 creating build/lib/lobster/ui/callbacks 2026-01-10T13:22:21,946 copying lobster/ui/callbacks/__init__.py -> build/lib/lobster/ui/callbacks 2026-01-10T13:22:21,948 copying lobster/ui/callbacks/textual_callback.py -> build/lib/lobster/ui/callbacks 2026-01-10T13:22:21,952 creating build/lib/lobster/ui/widgets 2026-01-10T13:22:21,954 copying lobster/ui/widgets/chat_message.py -> build/lib/lobster/ui/widgets 2026-01-10T13:22:21,956 copying lobster/ui/widgets/data_hub.py -> build/lib/lobster/ui/widgets 2026-01-10T13:22:21,960 copying lobster/ui/widgets/activity_log.py -> build/lib/lobster/ui/widgets 2026-01-10T13:22:21,963 copying lobster/ui/widgets/plot_preview.py -> build/lib/lobster/ui/widgets 2026-01-10T13:22:21,965 copying lobster/ui/widgets/system_info.py -> build/lib/lobster/ui/widgets 2026-01-10T13:22:21,968 copying lobster/ui/widgets/agents_panel.py -> build/lib/lobster/ui/widgets 2026-01-10T13:22:21,971 copying lobster/ui/widgets/queue_status_bar.py -> build/lib/lobster/ui/widgets 2026-01-10T13:22:21,973 copying lobster/ui/widgets/__init__.py -> build/lib/lobster/ui/widgets 2026-01-10T13:22:21,976 copying lobster/ui/widgets/connections_panel.py -> build/lib/lobster/ui/widgets 2026-01-10T13:22:21,978 copying lobster/ui/widgets/error_modal.py -> build/lib/lobster/ui/widgets 2026-01-10T13:22:21,980 copying lobster/ui/widgets/queue_panel.py -> build/lib/lobster/ui/widgets 2026-01-10T13:22:21,983 copying lobster/ui/widgets/results_display.py -> build/lib/lobster/ui/widgets 2026-01-10T13:22:21,985 copying lobster/ui/widgets/status_bar.py -> build/lib/lobster/ui/widgets 2026-01-10T13:22:21,988 copying lobster/ui/widgets/token_usage_panel.py -> build/lib/lobster/ui/widgets 2026-01-10T13:22:21,991 copying lobster/ui/widgets/adapters_panel.py -> build/lib/lobster/ui/widgets 2026-01-10T13:22:21,993 copying lobster/ui/widgets/modality_list.py -> build/lib/lobster/ui/widgets 2026-01-10T13:22:21,996 copying lobster/ui/widgets/query_prompt.py -> build/lib/lobster/ui/widgets 2026-01-10T13:22:21,998 creating build/lib/lobster/ui/components 2026-01-10T13:22:22,000 copying lobster/ui/components/status_display.py -> build/lib/lobster/ui/components 2026-01-10T13:22:22,003 copying lobster/ui/components/multi_progress.py -> build/lib/lobster/ui/components 2026-01-10T13:22:22,006 copying lobster/ui/components/__init__.py -> build/lib/lobster/ui/components 2026-01-10T13:22:22,008 copying lobster/ui/components/file_tree.py -> build/lib/lobster/ui/components 2026-01-10T13:22:22,011 copying lobster/ui/components/parallel_workers_progress.py -> build/lib/lobster/ui/components 2026-01-10T13:22:22,014 creating build/lib/lobster/ui/screens 2026-01-10T13:22:22,015 copying lobster/ui/screens/__init__.py -> build/lib/lobster/ui/screens 2026-01-10T13:22:22,018 copying lobster/ui/screens/analysis_screen.py -> build/lib/lobster/ui/screens 2026-01-10T13:22:22,021 creating build/lib/lobster/services/visualization 2026-01-10T13:22:22,023 copying lobster/services/visualization/__init__.py -> build/lib/lobster/services/visualization 2026-01-10T13:22:22,025 copying lobster/services/visualization/pymol_visualization_service.py -> build/lib/lobster/services/visualization 2026-01-10T13:22:22,028 copying lobster/services/visualization/bulk_visualization_service.py -> build/lib/lobster/services/visualization 2026-01-10T13:22:22,031 copying lobster/services/visualization/visualization_service.py -> build/lib/lobster/services/visualization 2026-01-10T13:22:22,037 creating build/lib/lobster/services/templates 2026-01-10T13:22:22,038 copying lobster/services/templates/__init__.py -> build/lib/lobster/services/templates 2026-01-10T13:22:22,041 copying lobster/services/templates/annotation_templates.py -> build/lib/lobster/services/templates 2026-01-10T13:22:22,045 creating build/lib/lobster/services/data_access 2026-01-10T13:22:22,046 copying lobster/services/data_access/geo_service.py -> build/lib/lobster/services/data_access 2026-01-10T13:22:22,059 copying lobster/services/data_access/sra_download_service.py -> build/lib/lobster/services/data_access 2026-01-10T13:22:22,062 copying lobster/services/data_access/content_access_service.py -> build/lib/lobster/services/data_access 2026-01-10T13:22:22,068 copying lobster/services/data_access/__init__.py -> build/lib/lobster/services/data_access 2026-01-10T13:22:22,070 copying lobster/services/data_access/protein_structure_fetch_service.py -> build/lib/lobster/services/data_access 2026-01-10T13:22:22,073 copying lobster/services/data_access/pride_download_service.py -> build/lib/lobster/services/data_access 2026-01-10T13:22:22,076 copying lobster/services/data_access/geo_fallback_service.py -> build/lib/lobster/services/data_access 2026-01-10T13:22:22,079 copying lobster/services/data_access/massive_download_service.py -> build/lib/lobster/services/data_access 2026-01-10T13:22:22,082 copying lobster/services/data_access/workspace_content_service.py -> build/lib/lobster/services/data_access 2026-01-10T13:22:22,086 copying lobster/services/data_access/docling_service.py -> build/lib/lobster/services/data_access 2026-01-10T13:22:22,091 copying lobster/services/data_access/geo_download_service.py -> build/lib/lobster/services/data_access 2026-01-10T13:22:22,094 creating build/lib/lobster/services/analysis 2026-01-10T13:22:22,095 copying lobster/services/analysis/pseudobulk_service.py -> build/lib/lobster/services/analysis 2026-01-10T13:22:22,098 copying lobster/services/analysis/__init__.py -> build/lib/lobster/services/analysis 2026-01-10T13:22:22,100 copying lobster/services/analysis/differential_formula_service.py -> build/lib/lobster/services/analysis 2026-01-10T13:22:22,102 copying lobster/services/analysis/enhanced_singlecell_service.py -> build/lib/lobster/services/analysis 2026-01-10T13:22:22,106 copying lobster/services/analysis/scvi_embedding_service.py -> build/lib/lobster/services/analysis 2026-01-10T13:22:22,109 copying lobster/services/analysis/structure_analysis_service.py -> build/lib/lobster/services/analysis 2026-01-10T13:22:22,112 copying lobster/services/analysis/clustering_service.py -> build/lib/lobster/services/analysis 2026-01-10T13:22:22,118 copying lobster/services/analysis/bulk_rnaseq_service.py -> build/lib/lobster/services/analysis 2026-01-10T13:22:22,122 creating build/lib/lobster/services/execution 2026-01-10T13:22:22,124 copying lobster/services/execution/__init__.py -> build/lib/lobster/services/execution 2026-01-10T13:22:22,126 copying lobster/services/execution/execution_context_builder.py -> build/lib/lobster/services/execution 2026-01-10T13:22:22,128 copying lobster/services/execution/custom_code_execution_service.py -> build/lib/lobster/services/execution 2026-01-10T13:22:22,131 creating build/lib/lobster/services/orchestration 2026-01-10T13:22:22,132 copying lobster/services/orchestration/__init__.py -> build/lib/lobster/services/orchestration 2026-01-10T13:22:22,134 copying lobster/services/orchestration/publication_processing_service.py -> build/lib/lobster/services/orchestration 2026-01-10T13:22:22,139 creating build/lib/lobster/services/data_management 2026-01-10T13:22:22,140 copying lobster/services/data_management/modality_management_service.py -> build/lib/lobster/services/data_management 2026-01-10T13:22:22,143 copying lobster/services/data_management/__init__.py -> build/lib/lobster/services/data_management 2026-01-10T13:22:22,145 copying lobster/services/data_management/concatenation_service.py -> build/lib/lobster/services/data_management 2026-01-10T13:22:22,149 creating build/lib/lobster/services/quality 2026-01-10T13:22:22,150 copying lobster/services/quality/preprocessing_service.py -> build/lib/lobster/services/quality 2026-01-10T13:22:22,153 copying lobster/services/quality/quality_service.py -> build/lib/lobster/services/quality 2026-01-10T13:22:22,156 copying lobster/services/quality/__init__.py -> build/lib/lobster/services/quality 2026-01-10T13:22:22,158 creating build/lib/lobster/services/ml 2026-01-10T13:22:22,159 copying lobster/services/ml/__init__.py -> build/lib/lobster/services/ml 2026-01-10T13:22:22,162 creating build/lib/lobster/services/metadata 2026-01-10T13:22:22,163 copying lobster/services/metadata/manual_annotation_service.py -> build/lib/lobster/services/metadata 2026-01-10T13:22:22,166 copying lobster/services/metadata/__init__.py -> build/lib/lobster/services/metadata 2026-01-10T13:22:22,167 copying lobster/services/metadata/metadata_standardization_service.py -> build/lib/lobster/services/metadata 2026-01-10T13:22:22,170 copying lobster/services/metadata/identifier_provenance_service.py -> build/lib/lobster/services/metadata 2026-01-10T13:22:22,173 copying lobster/services/metadata/sample_grouping_service.py -> build/lib/lobster/services/metadata 2026-01-10T13:22:22,175 copying lobster/services/metadata/metadata_validation_service.py -> build/lib/lobster/services/metadata 2026-01-10T13:22:22,178 creating build/lib/lobster/services/data_access/geo 2026-01-10T13:22:22,179 copying lobster/services/data_access/geo/strategy.py -> build/lib/lobster/services/data_access/geo 2026-01-10T13:22:22,182 copying lobster/services/data_access/geo/parser.py -> build/lib/lobster/services/data_access/geo 2026-01-10T13:22:22,185 copying lobster/services/data_access/geo/__init__.py -> build/lib/lobster/services/data_access/geo 2026-01-10T13:22:22,187 copying lobster/services/data_access/geo/constants.py -> build/lib/lobster/services/data_access/geo 2026-01-10T13:22:22,189 copying lobster/services/data_access/geo/facade.py -> build/lib/lobster/services/data_access/geo 2026-01-10T13:22:22,191 copying lobster/services/data_access/geo/downloader.py -> build/lib/lobster/services/data_access/geo 2026-01-10T13:22:22,195 creating build/lib/lobster/services/data_access/geo/loaders 2026-01-10T13:22:22,196 copying lobster/services/data_access/geo/loaders/__init__.py -> build/lib/lobster/services/data_access/geo/loaders 2026-01-10T13:22:22,198 copying lobster/services/data_access/geo/loaders/tenx.py -> build/lib/lobster/services/data_access/geo/loaders 2026-01-10T13:22:22,201 creating build/lib/lobster/services/data_access/geo/utils 2026-01-10T13:22:22,202 copying lobster/services/data_access/geo/utils/__init__.py -> build/lib/lobster/services/data_access/geo/utils 2026-01-10T13:22:22,204 creating build/lib/lobster/services/data_access/geo/sample 2026-01-10T13:22:22,205 copying lobster/services/data_access/geo/sample/__init__.py -> build/lib/lobster/services/data_access/geo/sample 2026-01-10T13:22:22,208 creating build/lib/lobster/services/data_access/geo/metadata 2026-01-10T13:22:22,209 copying lobster/services/data_access/geo/metadata/__init__.py -> build/lib/lobster/services/data_access/geo/metadata 2026-01-10T13:22:22,211 creating build/lib/lobster/services/metadata/protocol_extraction 2026-01-10T13:22:22,212 copying lobster/services/metadata/protocol_extraction/base.py -> build/lib/lobster/services/metadata/protocol_extraction 2026-01-10T13:22:22,214 copying lobster/services/metadata/protocol_extraction/__init__.py -> build/lib/lobster/services/metadata/protocol_extraction 2026-01-10T13:22:22,217 creating build/lib/lobster/services/metadata/protocol_extraction/rnaseq 2026-01-10T13:22:22,218 copying lobster/services/metadata/protocol_extraction/rnaseq/__init__.py -> build/lib/lobster/services/metadata/protocol_extraction/rnaseq 2026-01-10T13:22:22,220 copying lobster/services/metadata/protocol_extraction/rnaseq/service.py -> build/lib/lobster/services/metadata/protocol_extraction/rnaseq 2026-01-10T13:22:22,222 copying lobster/services/metadata/protocol_extraction/rnaseq/details.py -> build/lib/lobster/services/metadata/protocol_extraction/rnaseq 2026-01-10T13:22:22,225 creating build/lib/lobster/services/metadata/protocol_extraction/mass_spec 2026-01-10T13:22:22,225 copying lobster/services/metadata/protocol_extraction/mass_spec/__init__.py -> build/lib/lobster/services/metadata/protocol_extraction/mass_spec 2026-01-10T13:22:22,227 copying lobster/services/metadata/protocol_extraction/mass_spec/service.py -> build/lib/lobster/services/metadata/protocol_extraction/mass_spec 2026-01-10T13:22:22,229 copying lobster/services/metadata/protocol_extraction/mass_spec/details.py -> build/lib/lobster/services/metadata/protocol_extraction/mass_spec 2026-01-10T13:22:22,231 creating build/lib/lobster/services/metadata/protocol_extraction/amplicon 2026-01-10T13:22:22,232 copying lobster/services/metadata/protocol_extraction/amplicon/__init__.py -> build/lib/lobster/services/metadata/protocol_extraction/amplicon 2026-01-10T13:22:22,234 copying lobster/services/metadata/protocol_extraction/amplicon/service.py -> build/lib/lobster/services/metadata/protocol_extraction/amplicon 2026-01-10T13:22:22,237 copying lobster/services/metadata/protocol_extraction/amplicon/details.py -> build/lib/lobster/services/metadata/protocol_extraction/amplicon 2026-01-10T13:22:22,241 creating build/lib/lobster/config/providers 2026-01-10T13:22:22,242 copying lobster/config/providers/base_provider.py -> build/lib/lobster/config/providers 2026-01-10T13:22:22,244 copying lobster/config/providers/__init__.py -> build/lib/lobster/config/providers 2026-01-10T13:22:22,246 copying lobster/config/providers/anthropic_provider.py -> build/lib/lobster/config/providers 2026-01-10T13:22:22,249 copying lobster/config/providers/ollama_provider.py -> build/lib/lobster/config/providers 2026-01-10T13:22:22,251 copying lobster/config/providers/bedrock_provider.py -> build/lib/lobster/config/providers 2026-01-10T13:22:22,254 copying lobster/config/providers/registry.py -> build/lib/lobster/config/providers 2026-01-10T13:22:22,256 copying lobster/config/providers/gemini_provider.py -> build/lib/lobster/config/providers 2026-01-10T13:22:22,259 creating build/lib/lobster/cli_internal/utils 2026-01-10T13:22:22,260 copying lobster/cli_internal/utils/__init__.py -> build/lib/lobster/cli_internal/utils 2026-01-10T13:22:22,262 copying lobster/cli_internal/utils/path_resolution.py -> build/lib/lobster/cli_internal/utils 2026-01-10T13:22:22,265 creating build/lib/lobster/cli_internal/commands 2026-01-10T13:22:22,267 copying lobster/cli_internal/commands/__init__.py -> build/lib/lobster/cli_internal/commands 2026-01-10T13:22:22,269 copying lobster/cli_internal/commands/output_adapter.py -> build/lib/lobster/cli_internal/commands 2026-01-10T13:22:22,272 creating build/lib/lobster/cli_internal/commands/heavy 2026-01-10T13:22:22,273 copying lobster/cli_internal/commands/heavy/modality_commands.py -> build/lib/lobster/cli_internal/commands/heavy 2026-01-10T13:22:22,277 copying lobster/cli_internal/commands/heavy/__init__.py -> build/lib/lobster/cli_internal/commands/heavy 2026-01-10T13:22:22,279 copying lobster/cli_internal/commands/heavy/visualization_commands.py -> build/lib/lobster/cli_internal/commands/heavy 2026-01-10T13:22:22,281 copying lobster/cli_internal/commands/heavy/data_commands.py -> build/lib/lobster/cli_internal/commands/heavy 2026-01-10T13:22:22,284 creating build/lib/lobster/cli_internal/commands/light 2026-01-10T13:22:22,285 copying lobster/cli_internal/commands/light/config_commands.py -> build/lib/lobster/cli_internal/commands/light 2026-01-10T13:22:22,289 copying lobster/cli_internal/commands/light/__init__.py -> build/lib/lobster/cli_internal/commands/light 2026-01-10T13:22:22,290 copying lobster/cli_internal/commands/light/file_commands.py -> build/lib/lobster/cli_internal/commands/light 2026-01-10T13:22:22,293 copying lobster/cli_internal/commands/light/queue_commands.py -> build/lib/lobster/cli_internal/commands/light 2026-01-10T13:22:22,296 copying lobster/cli_internal/commands/light/pipeline_commands.py -> build/lib/lobster/cli_internal/commands/light 2026-01-10T13:22:22,299 copying lobster/cli_internal/commands/light/workspace_commands.py -> build/lib/lobster/cli_internal/commands/light 2026-01-10T13:22:22,302 copying lobster/cli_internal/commands/light/metadata_commands.py -> build/lib/lobster/cli_internal/commands/light 2026-01-10T13:22:22,305 creating build/lib/lobster/tools/providers 2026-01-10T13:22:22,306 copying lobster/tools/providers/geo_provider.py -> build/lib/lobster/tools/providers 2026-01-10T13:22:22,310 copying lobster/tools/providers/pride_provider.py -> build/lib/lobster/tools/providers 2026-01-10T13:22:22,312 copying lobster/tools/providers/pdb_provider.py -> build/lib/lobster/tools/providers 2026-01-10T13:22:22,315 copying lobster/tools/providers/pride_normalizer.py -> build/lib/lobster/tools/providers 2026-01-10T13:22:22,318 copying lobster/tools/providers/ncbi_query_builder.py -> build/lib/lobster/tools/providers 2026-01-10T13:22:22,321 copying lobster/tools/providers/base_provider.py -> build/lib/lobster/tools/providers 2026-01-10T13:22:22,324 copying lobster/tools/providers/webpage_provider.py -> build/lib/lobster/tools/providers 2026-01-10T13:22:22,326 copying lobster/tools/providers/provider_registry.py -> build/lib/lobster/tools/providers 2026-01-10T13:22:22,329 copying lobster/tools/providers/__init__.py -> build/lib/lobster/tools/providers 2026-01-10T13:22:22,331 copying lobster/tools/providers/massive_provider.py -> build/lib/lobster/tools/providers 2026-01-10T13:22:22,334 copying lobster/tools/providers/pubmed_provider.py -> build/lib/lobster/tools/providers 2026-01-10T13:22:22,337 copying lobster/tools/providers/structure_provider.py -> build/lib/lobster/tools/providers 2026-01-10T13:22:22,340 copying lobster/tools/providers/organism_enum.py -> build/lib/lobster/tools/providers 2026-01-10T13:22:22,342 copying lobster/tools/providers/biorxiv_medrxiv_config.py -> build/lib/lobster/tools/providers 2026-01-10T13:22:22,344 copying lobster/tools/providers/publication_resolver.py -> build/lib/lobster/tools/providers 2026-01-10T13:22:22,347 copying lobster/tools/providers/sra_provider.py -> build/lib/lobster/tools/providers 2026-01-10T13:22:22,351 copying lobster/tools/providers/biopython_entrez_wrapper.py -> build/lib/lobster/tools/providers 2026-01-10T13:22:22,354 copying lobster/tools/providers/biorxiv_medrxiv_provider.py -> build/lib/lobster/tools/providers 2026-01-10T13:22:22,358 copying lobster/tools/providers/geo_utils.py -> build/lib/lobster/tools/providers 2026-01-10T13:22:22,361 copying lobster/tools/providers/abstract_provider.py -> build/lib/lobster/tools/providers 2026-01-10T13:22:22,364 copying lobster/tools/providers/pmc_provider.py -> build/lib/lobster/tools/providers 2026-01-10T13:22:22,370 creating build/lib/lobster/tools/archive 2026-01-10T13:22:22,372 copying lobster/tools/archive/publication_service.py -> build/lib/lobster/tools/archive 2026-01-10T13:22:22,376 copying lobster/tools/archive/unified_content_service.py -> build/lib/lobster/tools/archive 2026-01-10T13:22:22,381 creating build/lib/lobster/core/adapters 2026-01-10T13:22:22,383 copying lobster/core/adapters/base.py -> build/lib/lobster/core/adapters 2026-01-10T13:22:22,387 copying lobster/core/adapters/__init__.py -> build/lib/lobster/core/adapters 2026-01-10T13:22:22,390 copying lobster/core/adapters/transcriptomics_adapter.py -> build/lib/lobster/core/adapters 2026-01-10T13:22:22,394 copying lobster/core/adapters/pseudobulk_adapter.py -> build/lib/lobster/core/adapters 2026-01-10T13:22:22,398 copying lobster/core/adapters/protein_structure_adapter.py -> build/lib/lobster/core/adapters 2026-01-10T13:22:22,402 copying lobster/core/adapters/proteomics_adapter.py -> build/lib/lobster/core/adapters 2026-01-10T13:22:22,407 creating build/lib/lobster/core/backends 2026-01-10T13:22:22,409 copying lobster/core/backends/mudata_backend.py -> build/lib/lobster/core/backends 2026-01-10T13:22:22,413 copying lobster/core/backends/base.py -> build/lib/lobster/core/backends 2026-01-10T13:22:22,416 copying lobster/core/backends/__init__.py -> build/lib/lobster/core/backends 2026-01-10T13:22:22,419 copying lobster/core/backends/h5ad_backend.py -> build/lib/lobster/core/backends 2026-01-10T13:22:22,424 creating build/lib/lobster/core/interfaces 2026-01-10T13:22:22,426 copying lobster/core/interfaces/backend.py -> build/lib/lobster/core/interfaces 2026-01-10T13:22:22,430 copying lobster/core/interfaces/adapter.py -> build/lib/lobster/core/interfaces 2026-01-10T13:22:22,433 copying lobster/core/interfaces/__init__.py -> build/lib/lobster/core/interfaces 2026-01-10T13:22:22,436 copying lobster/core/interfaces/download_service.py -> build/lib/lobster/core/interfaces 2026-01-10T13:22:22,440 copying lobster/core/interfaces/validator.py -> build/lib/lobster/core/interfaces 2026-01-10T13:22:22,443 copying lobster/core/interfaces/base_client.py -> build/lib/lobster/core/interfaces 2026-01-10T13:22:22,447 creating build/lib/lobster/core/utils 2026-01-10T13:22:22,449 copying lobster/core/utils/__init__.py -> build/lib/lobster/core/utils 2026-01-10T13:22:22,451 copying lobster/core/utils/h5ad_utils.py -> build/lib/lobster/core/utils 2026-01-10T13:22:22,456 creating build/lib/lobster/core/identifiers 2026-01-10T13:22:22,457 copying lobster/core/identifiers/__init__.py -> build/lib/lobster/core/identifiers 2026-01-10T13:22:22,459 copying lobster/core/identifiers/accession_resolver.py -> build/lib/lobster/core/identifiers 2026-01-10T13:22:22,463 creating build/lib/lobster/core/schemas 2026-01-10T13:22:22,464 copying lobster/core/schemas/download_urls.py -> build/lib/lobster/core/schemas 2026-01-10T13:22:22,467 copying lobster/core/schemas/database_mappings.py -> build/lib/lobster/core/schemas 2026-01-10T13:22:22,470 copying lobster/core/schemas/publication_queue.py -> build/lib/lobster/core/schemas 2026-01-10T13:22:22,473 copying lobster/core/schemas/__init__.py -> build/lib/lobster/core/schemas 2026-01-10T13:22:22,475 copying lobster/core/schemas/metagenomics.py -> build/lib/lobster/core/schemas 2026-01-10T13:22:22,479 copying lobster/core/schemas/transcriptomics.py -> build/lib/lobster/core/schemas 2026-01-10T13:22:22,482 copying lobster/core/schemas/database_registry.py -> build/lib/lobster/core/schemas 2026-01-10T13:22:22,485 copying lobster/core/schemas/validation.py -> build/lib/lobster/core/schemas 2026-01-10T13:22:22,488 copying lobster/core/schemas/sra.py -> build/lib/lobster/core/schemas 2026-01-10T13:22:22,491 copying lobster/core/schemas/protein_structure.py -> build/lib/lobster/core/schemas 2026-01-10T13:22:22,494 copying lobster/core/schemas/download_queue.py -> build/lib/lobster/core/schemas 2026-01-10T13:22:22,497 copying lobster/core/schemas/metabolomics.py -> build/lib/lobster/core/schemas 2026-01-10T13:22:22,500 copying lobster/core/schemas/proteomics.py -> build/lib/lobster/core/schemas 2026-01-10T13:22:22,503 copying lobster/core/schemas/export_schemas.py -> build/lib/lobster/core/schemas 2026-01-10T13:22:22,507 creating build/lib/lobster/agents/transcriptomics 2026-01-10T13:22:22,509 copying lobster/agents/transcriptomics/annotation_expert.py -> build/lib/lobster/agents/transcriptomics 2026-01-10T13:22:22,512 copying lobster/agents/transcriptomics/state.py -> build/lib/lobster/agents/transcriptomics 2026-01-10T13:22:22,515 copying lobster/agents/transcriptomics/de_analysis_expert.py -> build/lib/lobster/agents/transcriptomics 2026-01-10T13:22:22,519 copying lobster/agents/transcriptomics/shared_tools.py -> build/lib/lobster/agents/transcriptomics 2026-01-10T13:22:22,522 copying lobster/agents/transcriptomics/__init__.py -> build/lib/lobster/agents/transcriptomics 2026-01-10T13:22:22,525 copying lobster/agents/transcriptomics/transcriptomics_expert.py -> build/lib/lobster/agents/transcriptomics 2026-01-10T13:22:22,529 creating build/lib/lobster/agents/proteomics 2026-01-10T13:22:22,530 copying lobster/agents/proteomics/state.py -> build/lib/lobster/agents/proteomics 2026-01-10T13:22:22,532 copying lobster/agents/proteomics/__init__.py -> build/lib/lobster/agents/proteomics 2026-01-10T13:22:22,535 creating build/lib/lobster/agents/archive 2026-01-10T13:22:22,536 copying lobster/agents/archive/research_agent_assistant.py -> build/lib/lobster/agents/archive 2026-01-10T13:22:22,540 creating build/lib/lobster/agents/langgraph_supervisor 2026-01-10T13:22:22,541 copying lobster/agents/langgraph_supervisor/handoff.py -> build/lib/lobster/agents/langgraph_supervisor 2026-01-10T13:22:22,544 copying lobster/agents/langgraph_supervisor/__init__.py -> build/lib/lobster/agents/langgraph_supervisor 2026-01-10T13:22:22,546 copying lobster/agents/langgraph_supervisor/supervisor.py -> build/lib/lobster/agents/langgraph_supervisor 2026-01-10T13:22:22,549 copying lobster/agents/langgraph_supervisor/agent_name.py -> build/lib/lobster/agents/langgraph_supervisor 2026-01-10T13:22:22,552 running egg_info 2026-01-10T13:22:22,564 writing lobster_ai.egg-info/PKG-INFO 2026-01-10T13:22:22,594 writing dependency_links to lobster_ai.egg-info/dependency_links.txt 2026-01-10T13:22:22,595 writing entry points to lobster_ai.egg-info/entry_points.txt 2026-01-10T13:22:22,615 writing requirements to lobster_ai.egg-info/requires.txt 2026-01-10T13:22:22,616 writing top-level names to lobster_ai.egg-info/top_level.txt 2026-01-10T13:22:22,739 reading manifest file 'lobster_ai.egg-info/SOURCES.txt' 2026-01-10T13:22:22,755 adding license file 'LICENSE' 2026-01-10T13:22:22,770 writing manifest file 'lobster_ai.egg-info/SOURCES.txt' 2026-01-10T13:22:22,863 creating build/lib/lobster/services/metadata/protocol_extraction/amplicon/resources 2026-01-10T13:22:22,864 copying lobster/services/metadata/protocol_extraction/amplicon/resources/primers.json -> build/lib/lobster/services/metadata/protocol_extraction/amplicon/resources 2026-01-10T13:22:22,902 installing to build/bdist.linux-armv7l/wheel 2026-01-10T13:22:22,903 running install 2026-01-10T13:22:22,926 running install_lib 2026-01-10T13:22:22,933 creating build/bdist.linux-armv7l/wheel 2026-01-10T13:22:22,935 creating build/bdist.linux-armv7l/wheel/lobster 2026-01-10T13:22:22,937 copying build/lib/lobster/version.py -> build/bdist.linux-armv7l/wheel/./lobster 2026-01-10T13:22:22,942 copying build/lib/lobster/cli.py -> build/bdist.linux-armv7l/wheel/./lobster 2026-01-10T13:22:22,951 creating build/bdist.linux-armv7l/wheel/lobster/ui 2026-01-10T13:22:22,953 creating build/bdist.linux-armv7l/wheel/lobster/ui/formatters 2026-01-10T13:22:22,955 copying build/lib/lobster/ui/formatters/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/formatters 2026-01-10T13:22:22,957 copying build/lib/lobster/ui/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui 2026-01-10T13:22:22,959 copying build/lib/lobster/ui/commands.py -> build/bdist.linux-armv7l/wheel/./lobster/ui 2026-01-10T13:22:22,962 copying build/lib/lobster/ui/console_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/ui 2026-01-10T13:22:22,965 creating build/bdist.linux-armv7l/wheel/lobster/ui/services 2026-01-10T13:22:22,967 copying build/lib/lobster/ui/services/error_service.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/services 2026-01-10T13:22:22,970 copying build/lib/lobster/ui/services/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/services 2026-01-10T13:22:22,972 copying build/lib/lobster/ui/live_dashboard.py -> build/bdist.linux-armv7l/wheel/./lobster/ui 2026-01-10T13:22:22,975 creating build/bdist.linux-armv7l/wheel/lobster/ui/callbacks 2026-01-10T13:22:22,976 copying build/lib/lobster/ui/callbacks/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/callbacks 2026-01-10T13:22:22,979 copying build/lib/lobster/ui/callbacks/textual_callback.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/callbacks 2026-01-10T13:22:22,981 copying build/lib/lobster/ui/os_app.py -> build/bdist.linux-armv7l/wheel/./lobster/ui 2026-01-10T13:22:22,984 creating build/bdist.linux-armv7l/wheel/lobster/ui/widgets 2026-01-10T13:22:22,986 copying build/lib/lobster/ui/widgets/chat_message.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-10T13:22:22,988 copying build/lib/lobster/ui/widgets/data_hub.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-10T13:22:22,991 copying build/lib/lobster/ui/widgets/activity_log.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-10T13:22:22,993 copying build/lib/lobster/ui/widgets/plot_preview.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-10T13:22:22,996 copying build/lib/lobster/ui/widgets/system_info.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-10T13:22:22,998 copying build/lib/lobster/ui/widgets/agents_panel.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-10T13:22:23,001 copying build/lib/lobster/ui/widgets/queue_status_bar.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-10T13:22:23,003 copying build/lib/lobster/ui/widgets/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-10T13:22:23,005 copying build/lib/lobster/ui/widgets/connections_panel.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-10T13:22:23,007 copying build/lib/lobster/ui/widgets/error_modal.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-10T13:22:23,010 copying build/lib/lobster/ui/widgets/queue_panel.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-10T13:22:23,012 copying build/lib/lobster/ui/widgets/results_display.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-10T13:22:23,014 copying build/lib/lobster/ui/widgets/status_bar.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-10T13:22:23,017 copying build/lib/lobster/ui/widgets/token_usage_panel.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-10T13:22:23,019 copying build/lib/lobster/ui/widgets/adapters_panel.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-10T13:22:23,022 copying build/lib/lobster/ui/widgets/modality_list.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-10T13:22:23,024 copying build/lib/lobster/ui/widgets/query_prompt.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-10T13:22:23,027 creating build/bdist.linux-armv7l/wheel/lobster/ui/components 2026-01-10T13:22:23,028 copying build/lib/lobster/ui/components/status_display.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/components 2026-01-10T13:22:23,031 copying build/lib/lobster/ui/components/multi_progress.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/components 2026-01-10T13:22:23,034 copying build/lib/lobster/ui/components/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/components 2026-01-10T13:22:23,037 copying build/lib/lobster/ui/components/file_tree.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/components 2026-01-10T13:22:23,040 copying build/lib/lobster/ui/components/parallel_workers_progress.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/components 2026-01-10T13:22:23,043 creating build/bdist.linux-armv7l/wheel/lobster/ui/screens 2026-01-10T13:22:23,044 copying build/lib/lobster/ui/screens/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/screens 2026-01-10T13:22:23,047 copying build/lib/lobster/ui/screens/analysis_screen.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/screens 2026-01-10T13:22:23,050 copying build/lib/lobster/ui/progress_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/ui 2026-01-10T13:22:23,053 copying build/lib/lobster/ui/themes.py -> build/bdist.linux-armv7l/wheel/./lobster/ui 2026-01-10T13:22:23,056 creating build/bdist.linux-armv7l/wheel/lobster/services 2026-01-10T13:22:23,058 creating build/bdist.linux-armv7l/wheel/lobster/services/visualization 2026-01-10T13:22:23,059 copying build/lib/lobster/services/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/visualization 2026-01-10T13:22:23,061 copying build/lib/lobster/services/visualization/pymol_visualization_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/visualization 2026-01-10T13:22:23,064 copying build/lib/lobster/services/visualization/bulk_visualization_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/visualization 2026-01-10T13:22:23,067 copying build/lib/lobster/services/visualization/visualization_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/visualization 2026-01-10T13:22:23,071 copying build/lib/lobster/services/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services 2026-01-10T13:22:23,073 creating build/bdist.linux-armv7l/wheel/lobster/services/templates 2026-01-10T13:22:23,074 copying build/lib/lobster/services/templates/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/templates 2026-01-10T13:22:23,076 copying build/lib/lobster/services/templates/annotation_templates.py -> build/bdist.linux-armv7l/wheel/./lobster/services/templates 2026-01-10T13:22:23,080 creating build/bdist.linux-armv7l/wheel/lobster/services/data_access 2026-01-10T13:22:23,083 copying build/lib/lobster/services/data_access/geo_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-10T13:22:23,089 copying build/lib/lobster/services/data_access/sra_download_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-10T13:22:23,092 copying build/lib/lobster/services/data_access/content_access_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-10T13:22:23,096 copying build/lib/lobster/services/data_access/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-10T13:22:23,097 copying build/lib/lobster/services/data_access/protein_structure_fetch_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-10T13:22:23,100 copying build/lib/lobster/services/data_access/pride_download_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-10T13:22:23,102 copying build/lib/lobster/services/data_access/geo_fallback_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-10T13:22:23,105 copying build/lib/lobster/services/data_access/massive_download_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-10T13:22:23,107 copying build/lib/lobster/services/data_access/workspace_content_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-10T13:22:23,111 creating build/bdist.linux-armv7l/wheel/lobster/services/data_access/geo 2026-01-10T13:22:23,112 copying build/lib/lobster/services/data_access/geo/strategy.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo 2026-01-10T13:22:23,114 copying build/lib/lobster/services/data_access/geo/parser.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo 2026-01-10T13:22:23,118 copying build/lib/lobster/services/data_access/geo/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo 2026-01-10T13:22:23,120 creating build/bdist.linux-armv7l/wheel/lobster/services/data_access/geo/loaders 2026-01-10T13:22:23,121 copying build/lib/lobster/services/data_access/geo/loaders/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo/loaders 2026-01-10T13:22:23,123 copying build/lib/lobster/services/data_access/geo/loaders/tenx.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo/loaders 2026-01-10T13:22:23,126 creating build/bdist.linux-armv7l/wheel/lobster/services/data_access/geo/utils 2026-01-10T13:22:23,127 copying build/lib/lobster/services/data_access/geo/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo/utils 2026-01-10T13:22:23,129 copying build/lib/lobster/services/data_access/geo/constants.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo 2026-01-10T13:22:23,132 copying build/lib/lobster/services/data_access/geo/facade.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo 2026-01-10T13:22:23,134 creating build/bdist.linux-armv7l/wheel/lobster/services/data_access/geo/sample 2026-01-10T13:22:23,135 copying build/lib/lobster/services/data_access/geo/sample/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo/sample 2026-01-10T13:22:23,137 creating build/bdist.linux-armv7l/wheel/lobster/services/data_access/geo/metadata 2026-01-10T13:22:23,138 copying build/lib/lobster/services/data_access/geo/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo/metadata 2026-01-10T13:22:23,140 copying build/lib/lobster/services/data_access/geo/downloader.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo 2026-01-10T13:22:23,143 copying build/lib/lobster/services/data_access/docling_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-10T13:22:23,146 copying build/lib/lobster/services/data_access/geo_download_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-10T13:22:23,150 creating build/bdist.linux-armv7l/wheel/lobster/services/analysis 2026-01-10T13:22:23,151 copying build/lib/lobster/services/analysis/pseudobulk_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-10T13:22:23,154 copying build/lib/lobster/services/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-10T13:22:23,156 copying build/lib/lobster/services/analysis/differential_formula_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-10T13:22:23,160 copying build/lib/lobster/services/analysis/enhanced_singlecell_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-10T13:22:23,163 copying build/lib/lobster/services/analysis/scvi_embedding_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-10T13:22:23,166 copying build/lib/lobster/services/analysis/structure_analysis_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-10T13:22:23,169 copying build/lib/lobster/services/analysis/clustering_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-10T13:22:23,174 copying build/lib/lobster/services/analysis/bulk_rnaseq_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-10T13:22:23,179 creating build/bdist.linux-armv7l/wheel/lobster/services/execution 2026-01-10T13:22:23,180 copying build/lib/lobster/services/execution/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/execution 2026-01-10T13:22:23,182 copying build/lib/lobster/services/execution/execution_context_builder.py -> build/bdist.linux-armv7l/wheel/./lobster/services/execution 2026-01-10T13:22:23,185 copying build/lib/lobster/services/execution/custom_code_execution_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/execution 2026-01-10T13:22:23,189 creating build/bdist.linux-armv7l/wheel/lobster/services/orchestration 2026-01-10T13:22:23,190 copying build/lib/lobster/services/orchestration/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/orchestration 2026-01-10T13:22:23,192 copying build/lib/lobster/services/orchestration/publication_processing_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/orchestration 2026-01-10T13:22:23,197 creating build/bdist.linux-armv7l/wheel/lobster/services/data_management 2026-01-10T13:22:23,199 copying build/lib/lobster/services/data_management/modality_management_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_management 2026-01-10T13:22:23,202 copying build/lib/lobster/services/data_management/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_management 2026-01-10T13:22:23,204 copying build/lib/lobster/services/data_management/concatenation_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_management 2026-01-10T13:22:23,208 creating build/bdist.linux-armv7l/wheel/lobster/services/quality 2026-01-10T13:22:23,210 copying build/lib/lobster/services/quality/preprocessing_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/quality 2026-01-10T13:22:23,213 copying build/lib/lobster/services/quality/quality_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/quality 2026-01-10T13:22:23,216 copying build/lib/lobster/services/quality/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/quality 2026-01-10T13:22:23,219 creating build/bdist.linux-armv7l/wheel/lobster/services/ml 2026-01-10T13:22:23,220 copying build/lib/lobster/services/ml/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/ml 2026-01-10T13:22:23,223 creating build/bdist.linux-armv7l/wheel/lobster/services/metadata 2026-01-10T13:22:23,224 copying build/lib/lobster/services/metadata/manual_annotation_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata 2026-01-10T13:22:23,227 copying build/lib/lobster/services/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata 2026-01-10T13:22:23,229 creating build/bdist.linux-armv7l/wheel/lobster/services/metadata/protocol_extraction 2026-01-10T13:22:23,231 copying build/lib/lobster/services/metadata/protocol_extraction/base.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction 2026-01-10T13:22:23,233 copying build/lib/lobster/services/metadata/protocol_extraction/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction 2026-01-10T13:22:23,236 creating build/bdist.linux-armv7l/wheel/lobster/services/metadata/protocol_extraction/rnaseq 2026-01-10T13:22:23,237 copying build/lib/lobster/services/metadata/protocol_extraction/rnaseq/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/rnaseq 2026-01-10T13:22:23,240 copying build/lib/lobster/services/metadata/protocol_extraction/rnaseq/service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/rnaseq 2026-01-10T13:22:23,242 copying build/lib/lobster/services/metadata/protocol_extraction/rnaseq/details.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/rnaseq 2026-01-10T13:22:23,244 creating build/bdist.linux-armv7l/wheel/lobster/services/metadata/protocol_extraction/mass_spec 2026-01-10T13:22:23,246 copying build/lib/lobster/services/metadata/protocol_extraction/mass_spec/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/mass_spec 2026-01-10T13:22:23,248 copying build/lib/lobster/services/metadata/protocol_extraction/mass_spec/service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/mass_spec 2026-01-10T13:22:23,251 copying build/lib/lobster/services/metadata/protocol_extraction/mass_spec/details.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/mass_spec 2026-01-10T13:22:23,253 creating build/bdist.linux-armv7l/wheel/lobster/services/metadata/protocol_extraction/amplicon 2026-01-10T13:22:23,255 creating build/bdist.linux-armv7l/wheel/lobster/services/metadata/protocol_extraction/amplicon/resources 2026-01-10T13:22:23,257 copying build/lib/lobster/services/metadata/protocol_extraction/amplicon/resources/primers.json -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/amplicon/resources 2026-01-10T13:22:23,259 copying build/lib/lobster/services/metadata/protocol_extraction/amplicon/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/amplicon 2026-01-10T13:22:23,261 copying build/lib/lobster/services/metadata/protocol_extraction/amplicon/service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/amplicon 2026-01-10T13:22:23,264 copying build/lib/lobster/services/metadata/protocol_extraction/amplicon/details.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/amplicon 2026-01-10T13:22:23,267 copying build/lib/lobster/services/metadata/metadata_standardization_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata 2026-01-10T13:22:23,270 copying build/lib/lobster/services/metadata/identifier_provenance_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata 2026-01-10T13:22:23,273 copying build/lib/lobster/services/metadata/sample_grouping_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata 2026-01-10T13:22:23,276 copying build/lib/lobster/services/metadata/metadata_validation_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata 2026-01-10T13:22:23,279 creating build/bdist.linux-armv7l/wheel/lobster/config 2026-01-10T13:22:23,280 copying build/lib/lobster/config/ollama_service.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-10T13:22:23,283 copying build/lib/lobster/config/model_service.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-10T13:22:23,286 copying build/lib/lobster/config/llm_factory.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-10T13:22:23,288 copying build/lib/lobster/config/provider_setup.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-10T13:22:23,291 copying build/lib/lobster/config/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-10T13:22:23,293 copying build/lib/lobster/config/global_config.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-10T13:22:23,296 copying build/lib/lobster/config/version_check.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-10T13:22:23,299 creating build/bdist.linux-armv7l/wheel/lobster/config/providers 2026-01-10T13:22:23,300 copying build/lib/lobster/config/providers/base_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers 2026-01-10T13:22:23,303 copying build/lib/lobster/config/providers/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers 2026-01-10T13:22:23,305 copying build/lib/lobster/config/providers/anthropic_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers 2026-01-10T13:22:23,307 copying build/lib/lobster/config/providers/ollama_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers 2026-01-10T13:22:23,310 copying build/lib/lobster/config/providers/bedrock_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers 2026-01-10T13:22:23,313 copying build/lib/lobster/config/providers/registry.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers 2026-01-10T13:22:23,316 copying build/lib/lobster/config/providers/gemini_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers 2026-01-10T13:22:23,318 copying build/lib/lobster/config/subscription_tiers.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-10T13:22:23,321 copying build/lib/lobster/config/constants.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-10T13:22:23,323 copying build/lib/lobster/config/settings.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-10T13:22:23,326 copying build/lib/lobster/config/agent_config.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-10T13:22:23,329 copying build/lib/lobster/config/config_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-10T13:22:23,331 copying build/lib/lobster/config/workspace_config.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-10T13:22:23,334 copying build/lib/lobster/config/supervisor_config.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-10T13:22:23,336 copying build/lib/lobster/config/ssl_setup.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-10T13:22:23,339 copying build/lib/lobster/config/base_config.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-10T13:22:23,341 copying build/lib/lobster/config/agent_registry.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-10T13:22:23,344 copying build/lib/lobster/config/agent_capabilities.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-10T13:22:23,346 copying build/lib/lobster/main.py -> build/bdist.linux-armv7l/wheel/./lobster 2026-01-10T13:22:23,349 creating build/bdist.linux-armv7l/wheel/lobster/cli_internal 2026-01-10T13:22:23,350 copying build/lib/lobster/cli_internal/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal 2026-01-10T13:22:23,353 creating build/bdist.linux-armv7l/wheel/lobster/cli_internal/utils 2026-01-10T13:22:23,354 copying build/lib/lobster/cli_internal/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/utils 2026-01-10T13:22:23,356 copying build/lib/lobster/cli_internal/utils/path_resolution.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/utils 2026-01-10T13:22:23,359 creating build/bdist.linux-armv7l/wheel/lobster/cli_internal/commands 2026-01-10T13:22:23,360 copying build/lib/lobster/cli_internal/commands/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands 2026-01-10T13:22:23,364 creating build/bdist.linux-armv7l/wheel/lobster/cli_internal/commands/heavy 2026-01-10T13:22:23,365 copying build/lib/lobster/cli_internal/commands/heavy/modality_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/heavy 2026-01-10T13:22:23,368 copying build/lib/lobster/cli_internal/commands/heavy/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/heavy 2026-01-10T13:22:23,370 copying build/lib/lobster/cli_internal/commands/heavy/visualization_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/heavy 2026-01-10T13:22:23,372 copying build/lib/lobster/cli_internal/commands/heavy/data_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/heavy 2026-01-10T13:22:23,376 creating build/bdist.linux-armv7l/wheel/lobster/cli_internal/commands/light 2026-01-10T13:22:23,377 copying build/lib/lobster/cli_internal/commands/light/config_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light 2026-01-10T13:22:23,380 copying build/lib/lobster/cli_internal/commands/light/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light 2026-01-10T13:22:23,382 copying build/lib/lobster/cli_internal/commands/light/file_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light 2026-01-10T13:22:23,385 copying build/lib/lobster/cli_internal/commands/light/queue_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light 2026-01-10T13:22:23,389 copying build/lib/lobster/cli_internal/commands/light/pipeline_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light 2026-01-10T13:22:23,391 copying build/lib/lobster/cli_internal/commands/light/workspace_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light 2026-01-10T13:22:23,395 copying build/lib/lobster/cli_internal/commands/light/metadata_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light 2026-01-10T13:22:23,398 copying build/lib/lobster/cli_internal/commands/output_adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands 2026-01-10T13:22:23,401 creating build/bdist.linux-armv7l/wheel/lobster/tools 2026-01-10T13:22:23,402 copying build/lib/lobster/tools/workspace_tool.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-10T13:22:23,407 copying build/lib/lobster/tools/todo_tools.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-10T13:22:23,409 copying build/lib/lobster/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-10T13:22:23,412 copying build/lib/lobster/tools/handoff_tool.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-10T13:22:23,414 copying build/lib/lobster/tools/enhanced_handoff_tool.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-10T13:22:23,418 creating build/bdist.linux-armv7l/wheel/lobster/tools/providers 2026-01-10T13:22:23,419 copying build/lib/lobster/tools/providers/geo_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-10T13:22:23,422 copying build/lib/lobster/tools/providers/pride_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-10T13:22:23,425 copying build/lib/lobster/tools/providers/pdb_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-10T13:22:23,427 copying build/lib/lobster/tools/providers/pride_normalizer.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-10T13:22:23,430 copying build/lib/lobster/tools/providers/ncbi_query_builder.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-10T13:22:23,432 copying build/lib/lobster/tools/providers/base_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-10T13:22:23,435 copying build/lib/lobster/tools/providers/webpage_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-10T13:22:23,437 copying build/lib/lobster/tools/providers/provider_registry.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-10T13:22:23,439 copying build/lib/lobster/tools/providers/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-10T13:22:23,442 copying build/lib/lobster/tools/providers/massive_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-10T13:22:23,444 copying build/lib/lobster/tools/providers/pubmed_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-10T13:22:23,448 copying build/lib/lobster/tools/providers/structure_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-10T13:22:23,450 copying build/lib/lobster/tools/providers/organism_enum.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-10T13:22:23,453 copying build/lib/lobster/tools/providers/biorxiv_medrxiv_config.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-10T13:22:23,455 copying build/lib/lobster/tools/providers/publication_resolver.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-10T13:22:23,457 copying build/lib/lobster/tools/providers/sra_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-10T13:22:23,461 copying build/lib/lobster/tools/providers/biopython_entrez_wrapper.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-10T13:22:23,464 copying build/lib/lobster/tools/providers/biorxiv_medrxiv_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-10T13:22:23,467 copying build/lib/lobster/tools/providers/geo_utils.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-10T13:22:23,469 copying build/lib/lobster/tools/providers/abstract_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-10T13:22:23,472 copying build/lib/lobster/tools/providers/pmc_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-10T13:22:23,475 copying build/lib/lobster/tools/geo_parser.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-10T13:22:23,477 copying build/lib/lobster/tools/custom_code_tool.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-10T13:22:23,480 copying build/lib/lobster/tools/gpu_detector.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-10T13:22:23,482 copying build/lib/lobster/tools/workflow_tracker.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-10T13:22:23,485 copying build/lib/lobster/tools/download_orchestrator.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-10T13:22:23,487 copying build/lib/lobster/tools/expert_handoff_patterns.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-10T13:22:23,490 copying build/lib/lobster/tools/geo_downloader.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-10T13:22:23,492 copying build/lib/lobster/tools/rate_limiter.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-10T13:22:23,495 copying build/lib/lobster/tools/expert_handoff_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-10T13:22:23,498 creating build/bdist.linux-armv7l/wheel/lobster/tools/archive 2026-01-10T13:22:23,499 copying build/lib/lobster/tools/archive/publication_service.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/archive 2026-01-10T13:22:23,502 copying build/lib/lobster/tools/archive/unified_content_service.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/archive 2026-01-10T13:22:23,505 copying build/lib/lobster/tools/pipeline_strategy.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-10T13:22:23,507 copying build/lib/lobster/tools/url_transforms.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-10T13:22:23,509 creating build/bdist.linux-armv7l/wheel/lobster/utils 2026-01-10T13:22:23,510 copying build/lib/lobster/utils/system.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-10T13:22:23,512 copying build/lib/lobster/utils/callbacks.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-10T13:22:23,515 copying build/lib/lobster/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-10T13:22:23,517 copying build/lib/lobster/utils/error_handlers.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-10T13:22:23,519 copying build/lib/lobster/utils/progress_wrapper.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-10T13:22:23,521 copying build/lib/lobster/utils/deviance.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-10T13:22:23,523 copying build/lib/lobster/utils/ssl_utils.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-10T13:22:23,525 copying build/lib/lobster/utils/json_extractor.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-10T13:22:23,527 copying build/lib/lobster/utils/file_analyzer.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-10T13:22:23,530 copying build/lib/lobster/utils/file_naming.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-10T13:22:23,532 copying build/lib/lobster/utils/logger.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-10T13:22:23,535 creating build/bdist.linux-armv7l/wheel/lobster/core 2026-01-10T13:22:23,536 copying build/lib/lobster/core/provenance.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-10T13:22:23,539 creating build/bdist.linux-armv7l/wheel/lobster/core/adapters 2026-01-10T13:22:23,540 copying build/lib/lobster/core/adapters/base.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters 2026-01-10T13:22:23,543 copying build/lib/lobster/core/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters 2026-01-10T13:22:23,544 copying build/lib/lobster/core/adapters/transcriptomics_adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters 2026-01-10T13:22:23,548 copying build/lib/lobster/core/adapters/pseudobulk_adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters 2026-01-10T13:22:23,550 copying build/lib/lobster/core/adapters/protein_structure_adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters 2026-01-10T13:22:23,553 copying build/lib/lobster/core/adapters/proteomics_adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters 2026-01-10T13:22:23,556 copying build/lib/lobster/core/plot_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-10T13:22:23,558 copying build/lib/lobster/core/publication_queue.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-10T13:22:23,561 copying build/lib/lobster/core/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-10T13:22:23,563 copying build/lib/lobster/core/client.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-10T13:22:23,566 copying build/lib/lobster/core/license_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-10T13:22:23,569 copying build/lib/lobster/core/exceptions.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-10T13:22:23,571 copying build/lib/lobster/core/queue_storage.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-10T13:22:23,573 copying build/lib/lobster/core/ris_parser.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-10T13:22:23,576 copying build/lib/lobster/core/notebook_validator.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-10T13:22:23,578 copying build/lib/lobster/core/data_manager_v2.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-10T13:22:23,582 copying build/lib/lobster/core/archive_utils.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-10T13:22:23,585 creating build/bdist.linux-armv7l/wheel/lobster/core/backends 2026-01-10T13:22:23,586 copying build/lib/lobster/core/backends/mudata_backend.py -> build/bdist.linux-armv7l/wheel/./lobster/core/backends 2026-01-10T13:22:23,589 copying build/lib/lobster/core/backends/base.py -> build/bdist.linux-armv7l/wheel/./lobster/core/backends 2026-01-10T13:22:23,591 copying build/lib/lobster/core/backends/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/backends 2026-01-10T13:22:23,593 copying build/lib/lobster/core/backends/h5ad_backend.py -> build/bdist.linux-armv7l/wheel/./lobster/core/backends 2026-01-10T13:22:23,596 creating build/bdist.linux-armv7l/wheel/lobster/core/interfaces 2026-01-10T13:22:23,597 copying build/lib/lobster/core/interfaces/backend.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces 2026-01-10T13:22:23,600 copying build/lib/lobster/core/interfaces/adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces 2026-01-10T13:22:23,602 copying build/lib/lobster/core/interfaces/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces 2026-01-10T13:22:23,604 copying build/lib/lobster/core/interfaces/download_service.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces 2026-01-10T13:22:23,606 copying build/lib/lobster/core/interfaces/validator.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces 2026-01-10T13:22:23,609 copying build/lib/lobster/core/interfaces/base_client.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces 2026-01-10T13:22:23,612 creating build/bdist.linux-armv7l/wheel/lobster/core/utils 2026-01-10T13:22:23,613 copying build/lib/lobster/core/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/utils 2026-01-10T13:22:23,615 copying build/lib/lobster/core/utils/h5ad_utils.py -> build/bdist.linux-armv7l/wheel/./lobster/core/utils 2026-01-10T13:22:23,618 creating build/bdist.linux-armv7l/wheel/lobster/core/identifiers 2026-01-10T13:22:23,619 copying build/lib/lobster/core/identifiers/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/identifiers 2026-01-10T13:22:23,621 copying build/lib/lobster/core/identifiers/accession_resolver.py -> build/bdist.linux-armv7l/wheel/./lobster/core/identifiers 2026-01-10T13:22:23,623 copying build/lib/lobster/core/workspace.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-10T13:22:23,625 copying build/lib/lobster/core/download_queue.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-10T13:22:23,628 copying build/lib/lobster/core/notebook_exporter.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-10T13:22:23,631 copying build/lib/lobster/core/ir_coverage.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-10T13:22:23,633 copying build/lib/lobster/core/plugin_loader.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-10T13:22:23,636 copying build/lib/lobster/core/analysis_ir.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-10T13:22:23,638 copying build/lib/lobster/core/config_resolver.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-10T13:22:23,641 copying build/lib/lobster/core/notebook_executor.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-10T13:22:23,644 creating build/bdist.linux-armv7l/wheel/lobster/core/schemas 2026-01-10T13:22:23,645 copying build/lib/lobster/core/schemas/download_urls.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-10T13:22:23,648 copying build/lib/lobster/core/schemas/database_mappings.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-10T13:22:23,650 copying build/lib/lobster/core/schemas/publication_queue.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-10T13:22:23,653 copying build/lib/lobster/core/schemas/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-10T13:22:23,655 copying build/lib/lobster/core/schemas/metagenomics.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-10T13:22:23,658 copying build/lib/lobster/core/schemas/transcriptomics.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-10T13:22:23,661 copying build/lib/lobster/core/schemas/database_registry.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-10T13:22:23,663 copying build/lib/lobster/core/schemas/validation.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-10T13:22:23,666 copying build/lib/lobster/core/schemas/sra.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-10T13:22:23,669 copying build/lib/lobster/core/schemas/protein_structure.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-10T13:22:23,671 copying build/lib/lobster/core/schemas/download_queue.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-10T13:22:23,673 copying build/lib/lobster/core/schemas/metabolomics.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-10T13:22:23,676 copying build/lib/lobster/core/schemas/proteomics.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-10T13:22:23,679 copying build/lib/lobster/core/schemas/export_schemas.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-10T13:22:23,682 copying build/lib/lobster/core/component_registry.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-10T13:22:23,685 creating build/bdist.linux-armv7l/wheel/lobster/lobster_cloud 2026-01-10T13:22:23,686 copying build/lib/lobster/lobster_cloud/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/lobster_cloud 2026-01-10T13:22:23,688 copying build/lib/lobster/lobster_cloud/client.py -> build/bdist.linux-armv7l/wheel/./lobster/lobster_cloud 2026-01-10T13:22:23,691 copying build/lib/lobster/__main__.py -> build/bdist.linux-armv7l/wheel/./lobster 2026-01-10T13:22:23,693 copying build/lib/lobster/_version.py -> build/bdist.linux-armv7l/wheel/./lobster 2026-01-10T13:22:23,695 creating build/bdist.linux-armv7l/wheel/lobster/agents 2026-01-10T13:22:23,696 copying build/lib/lobster/agents/visualization_expert.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-10T13:22:23,699 copying build/lib/lobster/agents/state.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-10T13:22:23,702 copying build/lib/lobster/agents/research_agent.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-10T13:22:23,707 copying build/lib/lobster/agents/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-10T13:22:23,710 creating build/bdist.linux-armv7l/wheel/lobster/agents/transcriptomics 2026-01-10T13:22:23,711 copying build/lib/lobster/agents/transcriptomics/annotation_expert.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics 2026-01-10T13:22:23,714 copying build/lib/lobster/agents/transcriptomics/state.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics 2026-01-10T13:22:23,716 copying build/lib/lobster/agents/transcriptomics/de_analysis_expert.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics 2026-01-10T13:22:23,720 copying build/lib/lobster/agents/transcriptomics/shared_tools.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics 2026-01-10T13:22:23,723 copying build/lib/lobster/agents/transcriptomics/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics 2026-01-10T13:22:23,725 copying build/lib/lobster/agents/transcriptomics/transcriptomics_expert.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics 2026-01-10T13:22:23,728 copying build/lib/lobster/agents/draw_graph.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-10T13:22:23,730 copying build/lib/lobster/agents/data_expert_assistant.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-10T13:22:23,733 copying build/lib/lobster/agents/supervisor.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-10T13:22:23,735 copying build/lib/lobster/agents/graph.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-10T13:22:23,738 creating build/bdist.linux-armv7l/wheel/lobster/agents/proteomics 2026-01-10T13:22:23,740 copying build/lib/lobster/agents/proteomics/state.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/proteomics 2026-01-10T13:22:23,741 copying build/lib/lobster/agents/proteomics/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/proteomics 2026-01-10T13:22:23,743 copying build/lib/lobster/agents/data_expert.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-10T13:22:23,747 creating build/bdist.linux-armv7l/wheel/lobster/agents/archive 2026-01-10T13:22:23,748 copying build/lib/lobster/agents/archive/research_agent_assistant.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/archive 2026-01-10T13:22:23,751 creating build/bdist.linux-armv7l/wheel/lobster/agents/langgraph_supervisor 2026-01-10T13:22:23,752 copying build/lib/lobster/agents/langgraph_supervisor/handoff.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/langgraph_supervisor 2026-01-10T13:22:23,755 copying build/lib/lobster/agents/langgraph_supervisor/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/langgraph_supervisor 2026-01-10T13:22:23,756 copying build/lib/lobster/agents/langgraph_supervisor/supervisor.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/langgraph_supervisor 2026-01-10T13:22:23,759 copying build/lib/lobster/agents/langgraph_supervisor/agent_name.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/langgraph_supervisor 2026-01-10T13:22:23,761 running install_egg_info 2026-01-10T13:22:23,767 Copying lobster_ai.egg-info to build/bdist.linux-armv7l/wheel/./lobster_ai-0.4.2.9-py3.11.egg-info 2026-01-10T13:22:23,780 running install_scripts 2026-01-10T13:22:23,793 creating build/bdist.linux-armv7l/wheel/lobster_ai-0.4.2.9.dist-info/WHEEL 2026-01-10T13:22:23,796 creating '/tmp/pip-wheel-a9mxao2b/.tmp-zzxdolji/lobster_ai-0.4.2.9-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-01-10T13:22:23,798 adding 'lobster/__main__.py' 2026-01-10T13:22:23,800 adding 'lobster/_version.py' 2026-01-10T13:22:23,828 adding 'lobster/cli.py' 2026-01-10T13:22:23,831 adding 'lobster/main.py' 2026-01-10T13:22:23,832 adding 'lobster/version.py' 2026-01-10T13:22:23,834 adding 'lobster/agents/__init__.py' 2026-01-10T13:22:23,841 adding 'lobster/agents/data_expert.py' 2026-01-10T13:22:23,846 adding 'lobster/agents/data_expert_assistant.py' 2026-01-10T13:22:23,847 adding 'lobster/agents/draw_graph.py' 2026-01-10T13:22:23,849 adding 'lobster/agents/graph.py' 2026-01-10T13:22:23,863 adding 'lobster/agents/research_agent.py' 2026-01-10T13:22:23,867 adding 'lobster/agents/state.py' 2026-01-10T13:22:23,874 adding 'lobster/agents/supervisor.py' 2026-01-10T13:22:23,879 adding 'lobster/agents/visualization_expert.py' 2026-01-10T13:22:23,883 adding 'lobster/agents/archive/research_agent_assistant.py' 2026-01-10T13:22:23,885 adding 'lobster/agents/langgraph_supervisor/__init__.py' 2026-01-10T13:22:23,887 adding 'lobster/agents/langgraph_supervisor/agent_name.py' 2026-01-10T13:22:23,890 adding 'lobster/agents/langgraph_supervisor/handoff.py' 2026-01-10T13:22:23,894 adding 'lobster/agents/langgraph_supervisor/supervisor.py' 2026-01-10T13:22:23,897 adding 'lobster/agents/proteomics/__init__.py' 2026-01-10T13:22:23,898 adding 'lobster/agents/proteomics/state.py' 2026-01-10T13:22:23,901 adding 'lobster/agents/transcriptomics/__init__.py' 2026-01-10T13:22:23,908 adding 'lobster/agents/transcriptomics/annotation_expert.py' 2026-01-10T13:22:23,922 adding 'lobster/agents/transcriptomics/de_analysis_expert.py' 2026-01-10T13:22:23,928 adding 'lobster/agents/transcriptomics/shared_tools.py' 2026-01-10T13:22:23,930 adding 'lobster/agents/transcriptomics/state.py' 2026-01-10T13:22:23,938 adding 'lobster/agents/transcriptomics/transcriptomics_expert.py' 2026-01-10T13:22:23,941 adding 'lobster/cli_internal/__init__.py' 2026-01-10T13:22:23,943 adding 'lobster/cli_internal/commands/__init__.py' 2026-01-10T13:22:23,945 adding 'lobster/cli_internal/commands/output_adapter.py' 2026-01-10T13:22:23,948 adding 'lobster/cli_internal/commands/heavy/__init__.py' 2026-01-10T13:22:23,950 adding 'lobster/cli_internal/commands/heavy/data_commands.py' 2026-01-10T13:22:23,954 adding 'lobster/cli_internal/commands/heavy/modality_commands.py' 2026-01-10T13:22:23,957 adding 'lobster/cli_internal/commands/heavy/visualization_commands.py' 2026-01-10T13:22:23,959 adding 'lobster/cli_internal/commands/light/__init__.py' 2026-01-10T13:22:23,963 adding 'lobster/cli_internal/commands/light/config_commands.py' 2026-01-10T13:22:23,967 adding 'lobster/cli_internal/commands/light/file_commands.py' 2026-01-10T13:22:23,969 adding 'lobster/cli_internal/commands/light/metadata_commands.py' 2026-01-10T13:22:23,971 adding 'lobster/cli_internal/commands/light/pipeline_commands.py' 2026-01-10T13:22:23,974 adding 'lobster/cli_internal/commands/light/queue_commands.py' 2026-01-10T13:22:23,978 adding 'lobster/cli_internal/commands/light/workspace_commands.py' 2026-01-10T13:22:23,979 adding 'lobster/cli_internal/utils/__init__.py' 2026-01-10T13:22:23,981 adding 'lobster/cli_internal/utils/path_resolution.py' 2026-01-10T13:22:23,983 adding 'lobster/config/__init__.py' 2026-01-10T13:22:23,985 adding 'lobster/config/agent_capabilities.py' 2026-01-10T13:22:23,988 adding 'lobster/config/agent_config.py' 2026-01-10T13:22:23,990 adding 'lobster/config/agent_registry.py' 2026-01-10T13:22:23,992 adding 'lobster/config/base_config.py' 2026-01-10T13:22:23,994 adding 'lobster/config/config_manager.py' 2026-01-10T13:22:23,995 adding 'lobster/config/constants.py' 2026-01-10T13:22:23,997 adding 'lobster/config/global_config.py' 2026-01-10T13:22:23,998 adding 'lobster/config/llm_factory.py' 2026-01-10T13:22:24,000 adding 'lobster/config/model_service.py' 2026-01-10T13:22:24,002 adding 'lobster/config/ollama_service.py' 2026-01-10T13:22:24,004 adding 'lobster/config/provider_setup.py' 2026-01-10T13:22:24,006 adding 'lobster/config/settings.py' 2026-01-10T13:22:24,008 adding 'lobster/config/ssl_setup.py' 2026-01-10T13:22:24,010 adding 'lobster/config/subscription_tiers.py' 2026-01-10T13:22:24,012 adding 'lobster/config/supervisor_config.py' 2026-01-10T13:22:24,013 adding 'lobster/config/version_check.py' 2026-01-10T13:22:24,015 adding 'lobster/config/workspace_config.py' 2026-01-10T13:22:24,017 adding 'lobster/config/providers/__init__.py' 2026-01-10T13:22:24,019 adding 'lobster/config/providers/anthropic_provider.py' 2026-01-10T13:22:24,020 adding 'lobster/config/providers/base_provider.py' 2026-01-10T13:22:24,022 adding 'lobster/config/providers/bedrock_provider.py' 2026-01-10T13:22:24,024 adding 'lobster/config/providers/gemini_provider.py' 2026-01-10T13:22:24,027 adding 'lobster/config/providers/ollama_provider.py' 2026-01-10T13:22:24,029 adding 'lobster/config/providers/registry.py' 2026-01-10T13:22:24,031 adding 'lobster/core/__init__.py' 2026-01-10T13:22:24,033 adding 'lobster/core/analysis_ir.py' 2026-01-10T13:22:24,036 adding 'lobster/core/archive_utils.py' 2026-01-10T13:22:24,046 adding 'lobster/core/client.py' 2026-01-10T13:22:24,048 adding 'lobster/core/component_registry.py' 2026-01-10T13:22:24,050 adding 'lobster/core/config_resolver.py' 2026-01-10T13:22:24,064 adding 'lobster/core/data_manager_v2.py' 2026-01-10T13:22:24,066 adding 'lobster/core/download_queue.py' 2026-01-10T13:22:24,068 adding 'lobster/core/exceptions.py' 2026-01-10T13:22:24,070 adding 'lobster/core/ir_coverage.py' 2026-01-10T13:22:24,074 adding 'lobster/core/license_manager.py' 2026-01-10T13:22:24,076 adding 'lobster/core/notebook_executor.py' 2026-01-10T13:22:24,079 adding 'lobster/core/notebook_exporter.py' 2026-01-10T13:22:24,081 adding 'lobster/core/notebook_validator.py' 2026-01-10T13:22:24,084 adding 'lobster/core/plot_manager.py' 2026-01-10T13:22:24,086 adding 'lobster/core/plugin_loader.py' 2026-01-10T13:22:24,088 adding 'lobster/core/provenance.py' 2026-01-10T13:22:24,091 adding 'lobster/core/publication_queue.py' 2026-01-10T13:22:24,092 adding 'lobster/core/queue_storage.py' 2026-01-10T13:22:24,095 adding 'lobster/core/ris_parser.py' 2026-01-10T13:22:24,096 adding 'lobster/core/workspace.py' 2026-01-10T13:22:24,098 adding 'lobster/core/adapters/__init__.py' 2026-01-10T13:22:24,100 adding 'lobster/core/adapters/base.py' 2026-01-10T13:22:24,102 adding 'lobster/core/adapters/protein_structure_adapter.py' 2026-01-10T13:22:24,106 adding 'lobster/core/adapters/proteomics_adapter.py' 2026-01-10T13:22:24,108 adding 'lobster/core/adapters/pseudobulk_adapter.py' 2026-01-10T13:22:24,112 adding 'lobster/core/adapters/transcriptomics_adapter.py' 2026-01-10T13:22:24,113 adding 'lobster/core/backends/__init__.py' 2026-01-10T13:22:24,115 adding 'lobster/core/backends/base.py' 2026-01-10T13:22:24,119 adding 'lobster/core/backends/h5ad_backend.py' 2026-01-10T13:22:24,122 adding 'lobster/core/backends/mudata_backend.py' 2026-01-10T13:22:24,123 adding 'lobster/core/identifiers/__init__.py' 2026-01-10T13:22:24,125 adding 'lobster/core/identifiers/accession_resolver.py' 2026-01-10T13:22:24,128 adding 'lobster/core/interfaces/__init__.py' 2026-01-10T13:22:24,129 adding 'lobster/core/interfaces/adapter.py' 2026-01-10T13:22:24,131 adding 'lobster/core/interfaces/backend.py' 2026-01-10T13:22:24,132 adding 'lobster/core/interfaces/base_client.py' 2026-01-10T13:22:24,134 adding 'lobster/core/interfaces/download_service.py' 2026-01-10T13:22:24,136 adding 'lobster/core/interfaces/validator.py' 2026-01-10T13:22:24,138 adding 'lobster/core/schemas/__init__.py' 2026-01-10T13:22:24,141 adding 'lobster/core/schemas/database_mappings.py' 2026-01-10T13:22:24,143 adding 'lobster/core/schemas/database_registry.py' 2026-01-10T13:22:24,145 adding 'lobster/core/schemas/download_queue.py' 2026-01-10T13:22:24,147 adding 'lobster/core/schemas/download_urls.py' 2026-01-10T13:22:24,152 adding 'lobster/core/schemas/export_schemas.py' 2026-01-10T13:22:24,156 adding 'lobster/core/schemas/metabolomics.py' 2026-01-10T13:22:24,162 adding 'lobster/core/schemas/metagenomics.py' 2026-01-10T13:22:24,164 adding 'lobster/core/schemas/protein_structure.py' 2026-01-10T13:22:24,168 adding 'lobster/core/schemas/proteomics.py' 2026-01-10T13:22:24,171 adding 'lobster/core/schemas/publication_queue.py' 2026-01-10T13:22:24,175 adding 'lobster/core/schemas/sra.py' 2026-01-10T13:22:24,182 adding 'lobster/core/schemas/transcriptomics.py' 2026-01-10T13:22:24,185 adding 'lobster/core/schemas/validation.py' 2026-01-10T13:22:24,187 adding 'lobster/core/utils/__init__.py' 2026-01-10T13:22:24,189 adding 'lobster/core/utils/h5ad_utils.py' 2026-01-10T13:22:24,191 adding 'lobster/lobster_cloud/__init__.py' 2026-01-10T13:22:24,193 adding 'lobster/lobster_cloud/client.py' 2026-01-10T13:22:24,194 adding 'lobster/services/__init__.py' 2026-01-10T13:22:24,196 adding 'lobster/services/analysis/__init__.py' 2026-01-10T13:22:24,205 adding 'lobster/services/analysis/bulk_rnaseq_service.py' 2026-01-10T13:22:24,214 adding 'lobster/services/analysis/clustering_service.py' 2026-01-10T13:22:24,219 adding 'lobster/services/analysis/differential_formula_service.py' 2026-01-10T13:22:24,225 adding 'lobster/services/analysis/enhanced_singlecell_service.py' 2026-01-10T13:22:24,228 adding 'lobster/services/analysis/pseudobulk_service.py' 2026-01-10T13:22:24,230 adding 'lobster/services/analysis/scvi_embedding_service.py' 2026-01-10T13:22:24,233 adding 'lobster/services/analysis/structure_analysis_service.py' 2026-01-10T13:22:24,235 adding 'lobster/services/data_access/__init__.py' 2026-01-10T13:22:24,243 adding 'lobster/services/data_access/content_access_service.py' 2026-01-10T13:22:24,249 adding 'lobster/services/data_access/docling_service.py' 2026-01-10T13:22:24,252 adding 'lobster/services/data_access/geo_download_service.py' 2026-01-10T13:22:24,255 adding 'lobster/services/data_access/geo_fallback_service.py' 2026-01-10T13:22:24,279 adding 'lobster/services/data_access/geo_service.py' 2026-01-10T13:22:24,283 adding 'lobster/services/data_access/massive_download_service.py' 2026-01-10T13:22:24,285 adding 'lobster/services/data_access/pride_download_service.py' 2026-01-10T13:22:24,288 adding 'lobster/services/data_access/protein_structure_fetch_service.py' 2026-01-10T13:22:24,292 adding 'lobster/services/data_access/sra_download_service.py' 2026-01-10T13:22:24,297 adding 'lobster/services/data_access/workspace_content_service.py' 2026-01-10T13:22:24,299 adding 'lobster/services/data_access/geo/__init__.py' 2026-01-10T13:22:24,301 adding 'lobster/services/data_access/geo/constants.py' 2026-01-10T13:22:24,305 adding 'lobster/services/data_access/geo/downloader.py' 2026-01-10T13:22:24,306 adding 'lobster/services/data_access/geo/facade.py' 2026-01-10T13:22:24,313 adding 'lobster/services/data_access/geo/parser.py' 2026-01-10T13:22:24,316 adding 'lobster/services/data_access/geo/strategy.py' 2026-01-10T13:22:24,318 adding 'lobster/services/data_access/geo/loaders/__init__.py' 2026-01-10T13:22:24,320 adding 'lobster/services/data_access/geo/loaders/tenx.py' 2026-01-10T13:22:24,322 adding 'lobster/services/data_access/geo/metadata/__init__.py' 2026-01-10T13:22:24,323 adding 'lobster/services/data_access/geo/sample/__init__.py' 2026-01-10T13:22:24,325 adding 'lobster/services/data_access/geo/utils/__init__.py' 2026-01-10T13:22:24,326 adding 'lobster/services/data_management/__init__.py' 2026-01-10T13:22:24,331 adding 'lobster/services/data_management/concatenation_service.py' 2026-01-10T13:22:24,334 adding 'lobster/services/data_management/modality_management_service.py' 2026-01-10T13:22:24,336 adding 'lobster/services/execution/__init__.py' 2026-01-10T13:22:24,340 adding 'lobster/services/execution/custom_code_execution_service.py' 2026-01-10T13:22:24,342 adding 'lobster/services/execution/execution_context_builder.py' 2026-01-10T13:22:24,344 adding 'lobster/services/metadata/__init__.py' 2026-01-10T13:22:24,346 adding 'lobster/services/metadata/identifier_provenance_service.py' 2026-01-10T13:22:24,350 adding 'lobster/services/metadata/manual_annotation_service.py' 2026-01-10T13:22:24,354 adding 'lobster/services/metadata/metadata_standardization_service.py' 2026-01-10T13:22:24,357 adding 'lobster/services/metadata/metadata_validation_service.py' 2026-01-10T13:22:24,359 adding 'lobster/services/metadata/sample_grouping_service.py' 2026-01-10T13:22:24,361 adding 'lobster/services/metadata/protocol_extraction/__init__.py' 2026-01-10T13:22:24,363 adding 'lobster/services/metadata/protocol_extraction/base.py' 2026-01-10T13:22:24,365 adding 'lobster/services/metadata/protocol_extraction/amplicon/__init__.py' 2026-01-10T13:22:24,366 adding 'lobster/services/metadata/protocol_extraction/amplicon/details.py' 2026-01-10T13:22:24,369 adding 'lobster/services/metadata/protocol_extraction/amplicon/service.py' 2026-01-10T13:22:24,371 adding 'lobster/services/metadata/protocol_extraction/amplicon/resources/primers.json' 2026-01-10T13:22:24,373 adding 'lobster/services/metadata/protocol_extraction/mass_spec/__init__.py' 2026-01-10T13:22:24,375 adding 'lobster/services/metadata/protocol_extraction/mass_spec/details.py' 2026-01-10T13:22:24,376 adding 'lobster/services/metadata/protocol_extraction/mass_spec/service.py' 2026-01-10T13:22:24,378 adding 'lobster/services/metadata/protocol_extraction/rnaseq/__init__.py' 2026-01-10T13:22:24,379 adding 'lobster/services/metadata/protocol_extraction/rnaseq/details.py' 2026-01-10T13:22:24,380 adding 'lobster/services/metadata/protocol_extraction/rnaseq/service.py' 2026-01-10T13:22:24,382 adding 'lobster/services/ml/__init__.py' 2026-01-10T13:22:24,383 adding 'lobster/services/orchestration/__init__.py' 2026-01-10T13:22:24,392 adding 'lobster/services/orchestration/publication_processing_service.py' 2026-01-10T13:22:24,394 adding 'lobster/services/quality/__init__.py' 2026-01-10T13:22:24,399 adding 'lobster/services/quality/preprocessing_service.py' 2026-01-10T13:22:24,403 adding 'lobster/services/quality/quality_service.py' 2026-01-10T13:22:24,405 adding 'lobster/services/templates/__init__.py' 2026-01-10T13:22:24,409 adding 'lobster/services/templates/annotation_templates.py' 2026-01-10T13:22:24,411 adding 'lobster/services/visualization/__init__.py' 2026-01-10T13:22:24,413 adding 'lobster/services/visualization/bulk_visualization_service.py' 2026-01-10T13:22:24,417 adding 'lobster/services/visualization/pymol_visualization_service.py' 2026-01-10T13:22:24,424 adding 'lobster/services/visualization/visualization_service.py' 2026-01-10T13:22:24,427 adding 'lobster/tools/__init__.py' 2026-01-10T13:22:24,429 adding 'lobster/tools/custom_code_tool.py' 2026-01-10T13:22:24,431 adding 'lobster/tools/download_orchestrator.py' 2026-01-10T13:22:24,434 adding 'lobster/tools/enhanced_handoff_tool.py' 2026-01-10T13:22:24,436 adding 'lobster/tools/expert_handoff_manager.py' 2026-01-10T13:22:24,438 adding 'lobster/tools/expert_handoff_patterns.py' 2026-01-10T13:22:24,439 adding 'lobster/tools/geo_downloader.py' 2026-01-10T13:22:24,440 adding 'lobster/tools/geo_parser.py' 2026-01-10T13:22:24,442 adding 'lobster/tools/gpu_detector.py' 2026-01-10T13:22:24,443 adding 'lobster/tools/handoff_tool.py' 2026-01-10T13:22:24,444 adding 'lobster/tools/pipeline_strategy.py' 2026-01-10T13:22:24,448 adding 'lobster/tools/rate_limiter.py' 2026-01-10T13:22:24,450 adding 'lobster/tools/todo_tools.py' 2026-01-10T13:22:24,451 adding 'lobster/tools/url_transforms.py' 2026-01-10T13:22:24,454 adding 'lobster/tools/workflow_tracker.py' 2026-01-10T13:22:24,466 adding 'lobster/tools/workspace_tool.py' 2026-01-10T13:22:24,470 adding 'lobster/tools/archive/publication_service.py' 2026-01-10T13:22:24,473 adding 'lobster/tools/archive/unified_content_service.py' 2026-01-10T13:22:24,475 adding 'lobster/tools/providers/__init__.py' 2026-01-10T13:22:24,477 adding 'lobster/tools/providers/abstract_provider.py' 2026-01-10T13:22:24,479 adding 'lobster/tools/providers/base_provider.py' 2026-01-10T13:22:24,481 adding 'lobster/tools/providers/biopython_entrez_wrapper.py' 2026-01-10T13:22:24,483 adding 'lobster/tools/providers/biorxiv_medrxiv_config.py' 2026-01-10T13:22:24,489 adding 'lobster/tools/providers/biorxiv_medrxiv_provider.py' 2026-01-10T13:22:24,495 adding 'lobster/tools/providers/geo_provider.py' 2026-01-10T13:22:24,497 adding 'lobster/tools/providers/geo_utils.py' 2026-01-10T13:22:24,499 adding 'lobster/tools/providers/massive_provider.py' 2026-01-10T13:22:24,502 adding 'lobster/tools/providers/ncbi_query_builder.py' 2026-01-10T13:22:24,504 adding 'lobster/tools/providers/organism_enum.py' 2026-01-10T13:22:24,506 adding 'lobster/tools/providers/pdb_provider.py' 2026-01-10T13:22:24,513 adding 'lobster/tools/providers/pmc_provider.py' 2026-01-10T13:22:24,515 adding 'lobster/tools/providers/pride_normalizer.py' 2026-01-10T13:22:24,519 adding 'lobster/tools/providers/pride_provider.py' 2026-01-10T13:22:24,521 adding 'lobster/tools/providers/provider_registry.py' 2026-01-10T13:22:24,524 adding 'lobster/tools/providers/publication_resolver.py' 2026-01-10T13:22:24,533 adding 'lobster/tools/providers/pubmed_provider.py' 2026-01-10T13:22:24,540 adding 'lobster/tools/providers/sra_provider.py' 2026-01-10T13:22:24,542 adding 'lobster/tools/providers/structure_provider.py' 2026-01-10T13:22:24,544 adding 'lobster/tools/providers/webpage_provider.py' 2026-01-10T13:22:24,547 adding 'lobster/ui/__init__.py' 2026-01-10T13:22:24,549 adding 'lobster/ui/commands.py' 2026-01-10T13:22:24,551 adding 'lobster/ui/console_manager.py' 2026-01-10T13:22:24,554 adding 'lobster/ui/live_dashboard.py' 2026-01-10T13:22:24,555 adding 'lobster/ui/os_app.py' 2026-01-10T13:22:24,558 adding 'lobster/ui/progress_manager.py' 2026-01-10T13:22:24,560 adding 'lobster/ui/themes.py' 2026-01-10T13:22:24,562 adding 'lobster/ui/callbacks/__init__.py' 2026-01-10T13:22:24,564 adding 'lobster/ui/callbacks/textual_callback.py' 2026-01-10T13:22:24,566 adding 'lobster/ui/components/__init__.py' 2026-01-10T13:22:24,568 adding 'lobster/ui/components/file_tree.py' 2026-01-10T13:22:24,571 adding 'lobster/ui/components/multi_progress.py' 2026-01-10T13:22:24,573 adding 'lobster/ui/components/parallel_workers_progress.py' 2026-01-10T13:22:24,575 adding 'lobster/ui/components/status_display.py' 2026-01-10T13:22:24,577 adding 'lobster/ui/formatters/__init__.py' 2026-01-10T13:22:24,579 adding 'lobster/ui/screens/__init__.py' 2026-01-10T13:22:24,582 adding 'lobster/ui/screens/analysis_screen.py' 2026-01-10T13:22:24,584 adding 'lobster/ui/services/__init__.py' 2026-01-10T13:22:24,586 adding 'lobster/ui/services/error_service.py' 2026-01-10T13:22:24,588 adding 'lobster/ui/widgets/__init__.py' 2026-01-10T13:22:24,589 adding 'lobster/ui/widgets/activity_log.py' 2026-01-10T13:22:24,591 adding 'lobster/ui/widgets/adapters_panel.py' 2026-01-10T13:22:24,592 adding 'lobster/ui/widgets/agents_panel.py' 2026-01-10T13:22:24,593 adding 'lobster/ui/widgets/chat_message.py' 2026-01-10T13:22:24,595 adding 'lobster/ui/widgets/connections_panel.py' 2026-01-10T13:22:24,598 adding 'lobster/ui/widgets/data_hub.py' 2026-01-10T13:22:24,600 adding 'lobster/ui/widgets/error_modal.py' 2026-01-10T13:22:24,601 adding 'lobster/ui/widgets/modality_list.py' 2026-01-10T13:22:24,603 adding 'lobster/ui/widgets/plot_preview.py' 2026-01-10T13:22:24,604 adding 'lobster/ui/widgets/query_prompt.py' 2026-01-10T13:22:24,605 adding 'lobster/ui/widgets/queue_panel.py' 2026-01-10T13:22:24,607 adding 'lobster/ui/widgets/queue_status_bar.py' 2026-01-10T13:22:24,609 adding 'lobster/ui/widgets/results_display.py' 2026-01-10T13:22:24,610 adding 'lobster/ui/widgets/status_bar.py' 2026-01-10T13:22:24,612 adding 'lobster/ui/widgets/system_info.py' 2026-01-10T13:22:24,613 adding 'lobster/ui/widgets/token_usage_panel.py' 2026-01-10T13:22:24,615 adding 'lobster/utils/__init__.py' 2026-01-10T13:22:24,621 adding 'lobster/utils/callbacks.py' 2026-01-10T13:22:24,623 adding 'lobster/utils/deviance.py' 2026-01-10T13:22:24,625 adding 'lobster/utils/error_handlers.py' 2026-01-10T13:22:24,628 adding 'lobster/utils/file_analyzer.py' 2026-01-10T13:22:24,630 adding 'lobster/utils/file_naming.py' 2026-01-10T13:22:24,632 adding 'lobster/utils/json_extractor.py' 2026-01-10T13:22:24,634 adding 'lobster/utils/logger.py' 2026-01-10T13:22:24,636 adding 'lobster/utils/progress_wrapper.py' 2026-01-10T13:22:24,637 adding 'lobster/utils/ssl_utils.py' 2026-01-10T13:22:24,639 adding 'lobster/utils/system.py' 2026-01-10T13:22:24,646 adding 'lobster_ai-0.4.2.9.dist-info/licenses/LICENSE' 2026-01-10T13:22:24,648 adding 'lobster_ai-0.4.2.9.dist-info/METADATA' 2026-01-10T13:22:24,649 adding 'lobster_ai-0.4.2.9.dist-info/WHEEL' 2026-01-10T13:22:24,650 adding 'lobster_ai-0.4.2.9.dist-info/entry_points.txt' 2026-01-10T13:22:24,651 adding 'lobster_ai-0.4.2.9.dist-info/top_level.txt' 2026-01-10T13:22:24,656 adding 'lobster_ai-0.4.2.9.dist-info/RECORD' 2026-01-10T13:22:24,676 removing build/bdist.linux-armv7l/wheel 2026-01-10T13:22:24,861 Building wheel for lobster-ai (pyproject.toml): finished with status 'done' 2026-01-10T13:22:24,895 Created wheel for lobster-ai: filename=lobster_ai-0.4.2.9-py3-none-any.whl size=1367428 sha256=af6e0dc686c52295664e3d75d024c8ef2a309a1c70a08347ecfab416f9ed0577 2026-01-10T13:22:24,896 Stored in directory: /tmp/pip-ephem-wheel-cache-bc626qdr/wheels/e3/0d/6d/a5c6b3d286c4cb1702733ce2a00f5ad29b65d9f9831274ca26 2026-01-10T13:22:24,923 Successfully built lobster-ai 2026-01-10T13:22:24,963 Removed build tracker: '/tmp/pip-build-tracker-8pkthylz'