2026-01-12T14:50:00,619 Created temporary directory: /tmp/pip-ephem-wheel-cache-t1wzxdgq 2026-01-12T14:50:00,621 Created temporary directory: /tmp/pip-build-tracker-5r9j4_or 2026-01-12T14:50:00,621 Initialized build tracking at /tmp/pip-build-tracker-5r9j4_or 2026-01-12T14:50:00,622 Created build tracker: /tmp/pip-build-tracker-5r9j4_or 2026-01-12T14:50:00,622 Entered build tracker: /tmp/pip-build-tracker-5r9j4_or 2026-01-12T14:50:00,623 Created temporary directory: /tmp/pip-wheel-szrg2kka 2026-01-12T14:50:00,626 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. 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https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-12T14:50:01,088 Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.2.8-py3-none-any.whl#sha256=4e70ce958b4ab6f439a643cff47047d6d221aec8ef0ed576703d5ebe59d4679f (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-12T14:50:01,088 Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.2.7-py3-none-any.whl#sha256=5e1c5222066a9ff404f8ab7579f3141026c4e6e9f1cdc62071c2868018d2f52e (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-12T14:50:01,089 Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.2.6-py3-none-any.whl#sha256=ca28e21145fc4a1936f013a907db69df8bc14be38e4780128404c7ad5e059e30 (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-12T14:50:01,089 Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.2.5-py3-none-any.whl#sha256=a7da5f06f7ae456fba8ebde188162be937d83d5b35fed871a15a2da14b66cb31 (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-12T14:50:01,090 Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.2.4-py3-none-any.whl#sha256=bc4dd2139d3a25cddfd4ea133273777bdbaa10bd8fdec1598075ae8f2b9e5a48 (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-12T14:50:01,090 Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.2.3-py3-none-any.whl#sha256=e20fcd82d085148731bb8a8a692b53b83a4b970546ce7a079074d6a5f3accef4 (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-12T14:50:01,091 Skipping link: No binaries permitted for lobster-ai: 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https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.1.2-py3-none-any.whl#sha256=7f38e7703c88c0c7fe4811c9c7b04da6469ca264d3e261e794b0a59376ba4d0e (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-12T14:50:01,096 Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.1.1-py3-none-any.whl#sha256=d30d1083ded2235ea62f728b72c55b58d61c4164f9913d1996d68c451dac3c4d (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-12T14:50:01,097 Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.0.9-py3-none-any.whl#sha256=48a46075806c2941d705fa7eb0da81c1c162cc4b62b1bc22b578315363b4de75 (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-12T14:50:01,097 Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.0.8-py3-none-any.whl#sha256=a66d81b7558824d17ab891c3a592ceb8ee53492f413d9cfdd89bdecd8fd1de85 (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-12T14:50:01,098 Skipping link: No binaries permitted for lobster-ai: https://www.piwheels.org/simple/lobster-ai/lobster_ai-0.4.0.7-py3-none-any.whl#sha256=cbee755d3f7ac5e1cd5b65bfe0309faa4acba90c1a6a1b32036010c45f0868d9 (from https://www.piwheels.org/simple/lobster-ai/) (requires-python:>=3.11) 2026-01-12T14:50:01,098 Skipping link: not a file: https://www.piwheels.org/simple/lobster-ai/ 2026-01-12T14:50:01,099 Skipping link: not a file: https://pypi.org/simple/lobster-ai/ 2026-01-12T14:50:01,121 Given no hashes to check 1 links for project 'lobster-ai': discarding no candidates 2026-01-12T14:50:01,139 Collecting lobster-ai==0.4.3.6 2026-01-12T14:50:01,141 Created temporary directory: /tmp/pip-unpack-glw3g1a_ 2026-01-12T14:50:01,371 Downloading lobster_ai-0.4.3.6.tar.gz (1.2 MB) 2026-01-12T14:50:02,451 Added lobster-ai==0.4.3.6 from https://files.pythonhosted.org/packages/76/98/f37f88cf558e0a6882cabdc78c15ba65391d228efd09617804d140c390ce/lobster_ai-0.4.3.6.tar.gz to build tracker '/tmp/pip-build-tracker-5r9j4_or' 2026-01-12T14:50:02,460 Created temporary directory: /tmp/pip-build-env-q8olxe3c 2026-01-12T14:50:02,464 Installing build dependencies: started 2026-01-12T14:50:02,466 Running command pip subprocess to install build dependencies 2026-01-12T14:50:03,591 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-01-12T14:50:04,247 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-01-12T14:50:04,270 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-01-12T14:50:05,974 Collecting setuptools>=65.0 2026-01-12T14:50:06,164 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2026-01-12T14:50:06,434 Collecting wheel 2026-01-12T14:50:06,450 Using cached https://www.piwheels.org/simple/wheel/wheel-0.45.1-py3-none-any.whl (72 kB) 2026-01-12T14:50:09,443 Installing collected packages: wheel, setuptools 2026-01-12T14:50:09,680 Creating /tmp/pip-build-env-q8olxe3c/overlay/local/bin 2026-01-12T14:50:09,683 changing mode of /tmp/pip-build-env-q8olxe3c/overlay/local/bin/wheel to 755 2026-01-12T14:50:13,229 Successfully installed setuptools-80.9.0 wheel-0.45.1 2026-01-12T14:50:13,503 Installing build dependencies: finished with status 'done' 2026-01-12T14:50:13,510 Getting requirements to build wheel: started 2026-01-12T14:50:13,511 Running command Getting requirements to build wheel 2026-01-12T14:50:14,194 /tmp/pip-build-env-q8olxe3c/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `license` overwritten by `pyproject.toml` 2026-01-12T14:50:14,195 corresp(dist, value, root_dir) 2026-01-12T14:50:14,195 /tmp/pip-build-env-q8olxe3c/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2026-01-12T14:50:14,196 corresp(dist, value, root_dir) 2026-01-12T14:50:14,196 /tmp/pip-build-env-q8olxe3c/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `extras_require` overwritten in `pyproject.toml` (optional-dependencies) 2026-01-12T14:50:14,197 corresp(dist, value, root_dir) 2026-01-12T14:50:14,333 running egg_info 2026-01-12T14:50:14,340 writing lobster_ai.egg-info/PKG-INFO 2026-01-12T14:50:14,370 writing dependency_links to lobster_ai.egg-info/dependency_links.txt 2026-01-12T14:50:14,372 writing entry points to lobster_ai.egg-info/entry_points.txt 2026-01-12T14:50:14,392 writing requirements to lobster_ai.egg-info/requires.txt 2026-01-12T14:50:14,393 writing top-level names to lobster_ai.egg-info/top_level.txt 2026-01-12T14:50:14,550 reading manifest file 'lobster_ai.egg-info/SOURCES.txt' 2026-01-12T14:50:14,567 adding license file 'LICENSE' 2026-01-12T14:50:14,582 writing manifest file 'lobster_ai.egg-info/SOURCES.txt' 2026-01-12T14:50:14,681 Getting requirements to build wheel: finished with status 'done' 2026-01-12T14:50:14,685 Created temporary directory: /tmp/pip-modern-metadata-mb5jhidn 2026-01-12T14:50:14,687 Preparing metadata (pyproject.toml): started 2026-01-12T14:50:14,689 Running command Preparing metadata (pyproject.toml) 2026-01-12T14:50:15,344 /tmp/pip-build-env-q8olxe3c/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `license` overwritten by `pyproject.toml` 2026-01-12T14:50:15,345 corresp(dist, value, root_dir) 2026-01-12T14:50:15,345 /tmp/pip-build-env-q8olxe3c/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2026-01-12T14:50:15,346 corresp(dist, value, root_dir) 2026-01-12T14:50:15,347 /tmp/pip-build-env-q8olxe3c/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `extras_require` overwritten in `pyproject.toml` (optional-dependencies) 2026-01-12T14:50:15,347 corresp(dist, value, root_dir) 2026-01-12T14:50:15,451 running dist_info 2026-01-12T14:50:15,463 creating /tmp/pip-modern-metadata-mb5jhidn/lobster_ai.egg-info 2026-01-12T14:50:15,464 writing /tmp/pip-modern-metadata-mb5jhidn/lobster_ai.egg-info/PKG-INFO 2026-01-12T14:50:15,495 writing dependency_links to /tmp/pip-modern-metadata-mb5jhidn/lobster_ai.egg-info/dependency_links.txt 2026-01-12T14:50:15,497 writing entry points to /tmp/pip-modern-metadata-mb5jhidn/lobster_ai.egg-info/entry_points.txt 2026-01-12T14:50:15,516 writing requirements to /tmp/pip-modern-metadata-mb5jhidn/lobster_ai.egg-info/requires.txt 2026-01-12T14:50:15,517 writing top-level names to /tmp/pip-modern-metadata-mb5jhidn/lobster_ai.egg-info/top_level.txt 2026-01-12T14:50:15,519 writing manifest file '/tmp/pip-modern-metadata-mb5jhidn/lobster_ai.egg-info/SOURCES.txt' 2026-01-12T14:50:15,663 reading manifest file '/tmp/pip-modern-metadata-mb5jhidn/lobster_ai.egg-info/SOURCES.txt' 2026-01-12T14:50:15,665 adding license file 'LICENSE' 2026-01-12T14:50:15,676 writing manifest file '/tmp/pip-modern-metadata-mb5jhidn/lobster_ai.egg-info/SOURCES.txt' 2026-01-12T14:50:15,677 creating '/tmp/pip-modern-metadata-mb5jhidn/lobster_ai-0.4.3.6.dist-info' 2026-01-12T14:50:15,810 Preparing metadata (pyproject.toml): finished with status 'done' 2026-01-12T14:50:15,817 Source in /tmp/pip-wheel-szrg2kka/lobster-ai_36f8e1c1cb6b49c4a048e644d078a597 has version 0.4.3.6, which satisfies requirement lobster-ai==0.4.3.6 from https://files.pythonhosted.org/packages/76/98/f37f88cf558e0a6882cabdc78c15ba65391d228efd09617804d140c390ce/lobster_ai-0.4.3.6.tar.gz 2026-01-12T14:50:15,818 Removed lobster-ai==0.4.3.6 from https://files.pythonhosted.org/packages/76/98/f37f88cf558e0a6882cabdc78c15ba65391d228efd09617804d140c390ce/lobster_ai-0.4.3.6.tar.gz from build tracker '/tmp/pip-build-tracker-5r9j4_or' 2026-01-12T14:50:15,828 Created temporary directory: /tmp/pip-unpack-mhy12d67 2026-01-12T14:50:15,829 Building wheels for collected packages: lobster-ai 2026-01-12T14:50:15,833 Created temporary directory: /tmp/pip-wheel-v0d3897h 2026-01-12T14:50:15,834 Destination directory: /tmp/pip-wheel-v0d3897h 2026-01-12T14:50:15,836 Building wheel for lobster-ai (pyproject.toml): started 2026-01-12T14:50:15,838 Running command Building wheel for lobster-ai (pyproject.toml) 2026-01-12T14:50:16,453 /tmp/pip-build-env-q8olxe3c/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `license` overwritten by `pyproject.toml` 2026-01-12T14:50:16,453 corresp(dist, value, root_dir) 2026-01-12T14:50:16,454 /tmp/pip-build-env-q8olxe3c/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2026-01-12T14:50:16,454 corresp(dist, value, root_dir) 2026-01-12T14:50:16,455 /tmp/pip-build-env-q8olxe3c/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `extras_require` overwritten in `pyproject.toml` (optional-dependencies) 2026-01-12T14:50:16,455 corresp(dist, value, root_dir) 2026-01-12T14:50:16,547 running bdist_wheel 2026-01-12T14:50:16,568 running build 2026-01-12T14:50:16,569 running build_py 2026-01-12T14:50:16,575 creating build/lib/lobster 2026-01-12T14:50:16,578 copying lobster/version.py -> build/lib/lobster 2026-01-12T14:50:16,580 copying lobster/_version.py -> build/lib/lobster 2026-01-12T14:50:16,582 copying lobster/__main__.py -> build/lib/lobster 2026-01-12T14:50:16,584 copying lobster/cli.py -> build/lib/lobster 2026-01-12T14:50:16,591 copying lobster/main.py -> build/lib/lobster 2026-01-12T14:50:16,593 creating build/lib/lobster/config 2026-01-12T14:50:16,595 copying lobster/config/supervisor_config.py -> build/lib/lobster/config 2026-01-12T14:50:16,598 copying lobster/config/agent_config.py -> build/lib/lobster/config 2026-01-12T14:50:16,601 copying lobster/config/ollama_service.py -> build/lib/lobster/config 2026-01-12T14:50:16,603 copying lobster/config/workspace_config.py -> build/lib/lobster/config 2026-01-12T14:50:16,606 copying lobster/config/base_config.py -> build/lib/lobster/config 2026-01-12T14:50:16,608 copying lobster/config/ssl_setup.py -> build/lib/lobster/config 2026-01-12T14:50:16,611 copying lobster/config/version_check.py -> build/lib/lobster/config 2026-01-12T14:50:16,613 copying lobster/config/llm_factory.py -> build/lib/lobster/config 2026-01-12T14:50:16,616 copying lobster/config/global_config.py -> build/lib/lobster/config 2026-01-12T14:50:16,618 copying lobster/config/provider_setup.py -> build/lib/lobster/config 2026-01-12T14:50:16,621 copying lobster/config/config_manager.py -> build/lib/lobster/config 2026-01-12T14:50:16,623 copying lobster/config/agent_registry.py -> build/lib/lobster/config 2026-01-12T14:50:16,626 copying lobster/config/model_service.py -> build/lib/lobster/config 2026-01-12T14:50:16,629 copying lobster/config/__init__.py -> build/lib/lobster/config 2026-01-12T14:50:16,630 copying lobster/config/settings.py -> build/lib/lobster/config 2026-01-12T14:50:16,633 copying lobster/config/agent_capabilities.py -> build/lib/lobster/config 2026-01-12T14:50:16,636 copying lobster/config/subscription_tiers.py -> build/lib/lobster/config 2026-01-12T14:50:16,638 copying lobster/config/constants.py -> build/lib/lobster/config 2026-01-12T14:50:16,641 creating build/lib/lobster/utils 2026-01-12T14:50:16,642 copying lobster/utils/system.py -> build/lib/lobster/utils 2026-01-12T14:50:16,644 copying lobster/utils/callbacks.py -> build/lib/lobster/utils 2026-01-12T14:50:16,648 copying lobster/utils/json_extractor.py -> build/lib/lobster/utils 2026-01-12T14:50:16,650 copying lobster/utils/file_analyzer.py -> build/lib/lobster/utils 2026-01-12T14:50:16,653 copying lobster/utils/__init__.py -> build/lib/lobster/utils 2026-01-12T14:50:16,655 copying lobster/utils/ssl_utils.py -> build/lib/lobster/utils 2026-01-12T14:50:16,657 copying lobster/utils/error_handlers.py -> build/lib/lobster/utils 2026-01-12T14:50:16,661 copying lobster/utils/file_naming.py -> build/lib/lobster/utils 2026-01-12T14:50:16,663 copying lobster/utils/logger.py -> build/lib/lobster/utils 2026-01-12T14:50:16,665 copying lobster/utils/deviance.py -> build/lib/lobster/utils 2026-01-12T14:50:16,667 copying lobster/utils/progress_wrapper.py -> build/lib/lobster/utils 2026-01-12T14:50:16,670 creating build/lib/lobster/cli_internal 2026-01-12T14:50:16,672 copying lobster/cli_internal/__init__.py -> build/lib/lobster/cli_internal 2026-01-12T14:50:16,674 creating build/lib/lobster/lobster_cloud 2026-01-12T14:50:16,675 copying lobster/lobster_cloud/client.py -> build/lib/lobster/lobster_cloud 2026-01-12T14:50:16,678 copying lobster/lobster_cloud/__init__.py -> build/lib/lobster/lobster_cloud 2026-01-12T14:50:16,681 creating build/lib/lobster/tools 2026-01-12T14:50:16,682 copying lobster/tools/expert_handoff_manager.py -> build/lib/lobster/tools 2026-01-12T14:50:16,684 copying lobster/tools/gpu_detector.py -> build/lib/lobster/tools 2026-01-12T14:50:16,687 copying lobster/tools/geo_parser.py -> build/lib/lobster/tools 2026-01-12T14:50:16,689 copying lobster/tools/download_orchestrator.py -> build/lib/lobster/tools 2026-01-12T14:50:16,692 copying lobster/tools/workflow_tracker.py -> build/lib/lobster/tools 2026-01-12T14:50:16,695 copying lobster/tools/todo_tools.py -> build/lib/lobster/tools 2026-01-12T14:50:16,697 copying lobster/tools/custom_code_tool.py -> build/lib/lobster/tools 2026-01-12T14:50:16,700 copying lobster/tools/rate_limiter.py -> build/lib/lobster/tools 2026-01-12T14:50:16,703 copying lobster/tools/expert_handoff_patterns.py -> build/lib/lobster/tools 2026-01-12T14:50:16,706 copying lobster/tools/pipeline_strategy.py -> build/lib/lobster/tools 2026-01-12T14:50:16,708 copying lobster/tools/geo_downloader.py -> build/lib/lobster/tools 2026-01-12T14:50:16,710 copying lobster/tools/__init__.py -> build/lib/lobster/tools 2026-01-12T14:50:16,712 copying lobster/tools/enhanced_handoff_tool.py -> build/lib/lobster/tools 2026-01-12T14:50:16,715 copying lobster/tools/handoff_tool.py -> build/lib/lobster/tools 2026-01-12T14:50:16,718 copying lobster/tools/url_transforms.py -> build/lib/lobster/tools 2026-01-12T14:50:16,720 copying lobster/tools/workspace_tool.py -> build/lib/lobster/tools 2026-01-12T14:50:16,726 creating build/lib/lobster/core 2026-01-12T14:50:16,727 copying lobster/core/notebook_validator.py -> build/lib/lobster/core 2026-01-12T14:50:16,730 copying lobster/core/ir_coverage.py -> build/lib/lobster/core 2026-01-12T14:50:16,732 copying lobster/core/exceptions.py -> build/lib/lobster/core 2026-01-12T14:50:16,735 copying lobster/core/plugin_loader.py -> build/lib/lobster/core 2026-01-12T14:50:16,737 copying lobster/core/provenance.py -> build/lib/lobster/core 2026-01-12T14:50:16,740 copying lobster/core/client.py -> build/lib/lobster/core 2026-01-12T14:50:16,745 copying lobster/core/data_manager_v2.py -> build/lib/lobster/core 2026-01-12T14:50:16,749 copying lobster/core/publication_queue.py -> build/lib/lobster/core 2026-01-12T14:50:16,752 copying lobster/core/plot_manager.py -> build/lib/lobster/core 2026-01-12T14:50:16,755 copying lobster/core/archive_utils.py -> build/lib/lobster/core 2026-01-12T14:50:16,758 copying lobster/core/__init__.py -> build/lib/lobster/core 2026-01-12T14:50:16,760 copying lobster/core/analysis_ir.py -> build/lib/lobster/core 2026-01-12T14:50:16,762 copying lobster/core/config_resolver.py -> build/lib/lobster/core 2026-01-12T14:50:16,765 copying lobster/core/notebook_exporter.py -> build/lib/lobster/core 2026-01-12T14:50:16,768 copying lobster/core/license_manager.py -> build/lib/lobster/core 2026-01-12T14:50:16,771 copying lobster/core/component_registry.py -> build/lib/lobster/core 2026-01-12T14:50:16,774 copying lobster/core/notebook_executor.py -> build/lib/lobster/core 2026-01-12T14:50:16,777 copying lobster/core/download_queue.py -> build/lib/lobster/core 2026-01-12T14:50:16,779 copying lobster/core/queue_storage.py -> build/lib/lobster/core 2026-01-12T14:50:16,781 copying lobster/core/ris_parser.py -> build/lib/lobster/core 2026-01-12T14:50:16,784 copying lobster/core/workspace.py -> build/lib/lobster/core 2026-01-12T14:50:16,787 creating build/lib/lobster/ui 2026-01-12T14:50:16,788 copying lobster/ui/console_manager.py -> build/lib/lobster/ui 2026-01-12T14:50:16,792 copying lobster/ui/progress_manager.py -> build/lib/lobster/ui 2026-01-12T14:50:16,795 copying lobster/ui/live_dashboard.py -> build/lib/lobster/ui 2026-01-12T14:50:16,798 copying lobster/ui/themes.py -> build/lib/lobster/ui 2026-01-12T14:50:16,800 copying lobster/ui/os_app.py -> build/lib/lobster/ui 2026-01-12T14:50:16,803 copying lobster/ui/__init__.py -> build/lib/lobster/ui 2026-01-12T14:50:16,805 copying lobster/ui/commands.py -> build/lib/lobster/ui 2026-01-12T14:50:16,808 creating build/lib/lobster/services 2026-01-12T14:50:16,810 copying lobster/services/__init__.py -> build/lib/lobster/services 2026-01-12T14:50:16,812 creating build/lib/lobster/agents 2026-01-12T14:50:16,813 copying lobster/agents/draw_graph.py -> build/lib/lobster/agents 2026-01-12T14:50:16,815 copying lobster/agents/graph.py -> build/lib/lobster/agents 2026-01-12T14:50:16,818 copying lobster/agents/state.py -> build/lib/lobster/agents 2026-01-12T14:50:16,821 copying lobster/agents/visualization_expert.py -> build/lib/lobster/agents 2026-01-12T14:50:16,824 copying lobster/agents/supervisor.py -> build/lib/lobster/agents 2026-01-12T14:50:16,828 creating build/lib/lobster/config/providers 2026-01-12T14:50:16,829 copying lobster/config/providers/ollama_provider.py -> build/lib/lobster/config/providers 2026-01-12T14:50:16,832 copying lobster/config/providers/bedrock_provider.py -> build/lib/lobster/config/providers 2026-01-12T14:50:16,835 copying lobster/config/providers/__init__.py -> build/lib/lobster/config/providers 2026-01-12T14:50:16,837 copying lobster/config/providers/registry.py -> build/lib/lobster/config/providers 2026-01-12T14:50:16,840 copying lobster/config/providers/gemini_provider.py -> build/lib/lobster/config/providers 2026-01-12T14:50:16,843 copying lobster/config/providers/base_provider.py -> build/lib/lobster/config/providers 2026-01-12T14:50:16,845 copying lobster/config/providers/anthropic_provider.py -> build/lib/lobster/config/providers 2026-01-12T14:50:16,849 creating build/lib/lobster/cli_internal/utils 2026-01-12T14:50:16,850 copying lobster/cli_internal/utils/path_resolution.py -> build/lib/lobster/cli_internal/utils 2026-01-12T14:50:16,853 copying lobster/cli_internal/utils/__init__.py -> build/lib/lobster/cli_internal/utils 2026-01-12T14:50:16,855 creating build/lib/lobster/cli_internal/commands 2026-01-12T14:50:16,856 copying lobster/cli_internal/commands/output_adapter.py -> build/lib/lobster/cli_internal/commands 2026-01-12T14:50:16,859 copying lobster/cli_internal/commands/__init__.py -> build/lib/lobster/cli_internal/commands 2026-01-12T14:50:16,862 creating build/lib/lobster/cli_internal/commands/heavy 2026-01-12T14:50:16,863 copying lobster/cli_internal/commands/heavy/visualization_commands.py -> build/lib/lobster/cli_internal/commands/heavy 2026-01-12T14:50:16,866 copying lobster/cli_internal/commands/heavy/__init__.py -> build/lib/lobster/cli_internal/commands/heavy 2026-01-12T14:50:16,868 copying lobster/cli_internal/commands/heavy/modality_commands.py -> build/lib/lobster/cli_internal/commands/heavy 2026-01-12T14:50:16,871 copying lobster/cli_internal/commands/heavy/data_commands.py -> build/lib/lobster/cli_internal/commands/heavy 2026-01-12T14:50:16,874 creating build/lib/lobster/cli_internal/commands/light 2026-01-12T14:50:16,876 copying lobster/cli_internal/commands/light/workspace_commands.py -> build/lib/lobster/cli_internal/commands/light 2026-01-12T14:50:16,879 copying lobster/cli_internal/commands/light/__init__.py -> build/lib/lobster/cli_internal/commands/light 2026-01-12T14:50:16,881 copying lobster/cli_internal/commands/light/pipeline_commands.py -> build/lib/lobster/cli_internal/commands/light 2026-01-12T14:50:16,884 copying lobster/cli_internal/commands/light/queue_commands.py -> build/lib/lobster/cli_internal/commands/light 2026-01-12T14:50:16,887 copying lobster/cli_internal/commands/light/config_commands.py -> build/lib/lobster/cli_internal/commands/light 2026-01-12T14:50:16,890 copying lobster/cli_internal/commands/light/metadata_commands.py -> build/lib/lobster/cli_internal/commands/light 2026-01-12T14:50:16,893 copying lobster/cli_internal/commands/light/file_commands.py -> build/lib/lobster/cli_internal/commands/light 2026-01-12T14:50:16,897 creating build/lib/lobster/tools/providers 2026-01-12T14:50:16,898 copying lobster/tools/providers/biorxiv_medrxiv_provider.py -> build/lib/lobster/tools/providers 2026-01-12T14:50:16,902 copying lobster/tools/providers/geo_provider.py -> build/lib/lobster/tools/providers 2026-01-12T14:50:16,905 copying lobster/tools/providers/biorxiv_medrxiv_config.py -> build/lib/lobster/tools/providers 2026-01-12T14:50:16,907 copying lobster/tools/providers/organism_enum.py -> build/lib/lobster/tools/providers 2026-01-12T14:50:16,910 copying lobster/tools/providers/publication_resolver.py -> build/lib/lobster/tools/providers 2026-01-12T14:50:16,913 copying lobster/tools/providers/pride_provider.py -> build/lib/lobster/tools/providers 2026-01-12T14:50:16,916 copying lobster/tools/providers/webpage_provider.py -> build/lib/lobster/tools/providers 2026-01-12T14:50:16,919 copying lobster/tools/providers/massive_provider.py -> build/lib/lobster/tools/providers 2026-01-12T14:50:16,921 copying lobster/tools/providers/ncbi_query_builder.py -> build/lib/lobster/tools/providers 2026-01-12T14:50:16,924 copying lobster/tools/providers/__init__.py -> build/lib/lobster/tools/providers 2026-01-12T14:50:16,926 copying lobster/tools/providers/pdb_provider.py -> build/lib/lobster/tools/providers 2026-01-12T14:50:16,929 copying lobster/tools/providers/pmc_provider.py -> build/lib/lobster/tools/providers 2026-01-12T14:50:16,935 copying lobster/tools/providers/biopython_entrez_wrapper.py -> build/lib/lobster/tools/providers 2026-01-12T14:50:16,937 copying lobster/tools/providers/abstract_provider.py -> build/lib/lobster/tools/providers 2026-01-12T14:50:16,940 copying lobster/tools/providers/pride_normalizer.py -> build/lib/lobster/tools/providers 2026-01-12T14:50:16,943 copying lobster/tools/providers/geo_utils.py -> build/lib/lobster/tools/providers 2026-01-12T14:50:16,945 copying lobster/tools/providers/structure_provider.py -> build/lib/lobster/tools/providers 2026-01-12T14:50:16,947 copying lobster/tools/providers/base_provider.py -> build/lib/lobster/tools/providers 2026-01-12T14:50:16,950 copying lobster/tools/providers/pubmed_provider.py -> build/lib/lobster/tools/providers 2026-01-12T14:50:16,953 copying lobster/tools/providers/provider_registry.py -> build/lib/lobster/tools/providers 2026-01-12T14:50:16,956 copying lobster/tools/providers/sra_provider.py -> build/lib/lobster/tools/providers 2026-01-12T14:50:16,960 creating build/lib/lobster/tools/archive 2026-01-12T14:50:16,961 copying lobster/tools/archive/unified_content_service.py -> build/lib/lobster/tools/archive 2026-01-12T14:50:16,964 copying lobster/tools/archive/publication_service.py -> build/lib/lobster/tools/archive 2026-01-12T14:50:16,967 creating build/lib/lobster/core/identifiers 2026-01-12T14:50:16,968 copying lobster/core/identifiers/accession_resolver.py -> build/lib/lobster/core/identifiers 2026-01-12T14:50:16,971 copying lobster/core/identifiers/__init__.py -> build/lib/lobster/core/identifiers 2026-01-12T14:50:16,973 creating build/lib/lobster/core/backends 2026-01-12T14:50:16,974 copying lobster/core/backends/base.py -> build/lib/lobster/core/backends 2026-01-12T14:50:16,977 copying lobster/core/backends/h5ad_backend.py -> build/lib/lobster/core/backends 2026-01-12T14:50:16,980 copying lobster/core/backends/__init__.py -> build/lib/lobster/core/backends 2026-01-12T14:50:16,982 copying lobster/core/backends/mudata_backend.py -> build/lib/lobster/core/backends 2026-01-12T14:50:16,986 creating build/lib/lobster/core/adapters 2026-01-12T14:50:16,987 copying lobster/core/adapters/base.py -> build/lib/lobster/core/adapters 2026-01-12T14:50:16,990 copying lobster/core/adapters/pseudobulk_adapter.py -> build/lib/lobster/core/adapters 2026-01-12T14:50:16,992 copying lobster/core/adapters/proteomics_adapter.py -> build/lib/lobster/core/adapters 2026-01-12T14:50:16,995 copying lobster/core/adapters/__init__.py -> build/lib/lobster/core/adapters 2026-01-12T14:50:16,997 copying lobster/core/adapters/protein_structure_adapter.py -> build/lib/lobster/core/adapters 2026-01-12T14:50:17,000 copying lobster/core/adapters/transcriptomics_adapter.py -> build/lib/lobster/core/adapters 2026-01-12T14:50:17,003 creating build/lib/lobster/core/schemas 2026-01-12T14:50:17,004 copying lobster/core/schemas/database_registry.py -> build/lib/lobster/core/schemas 2026-01-12T14:50:17,007 copying lobster/core/schemas/export_schemas.py -> build/lib/lobster/core/schemas 2026-01-12T14:50:17,010 copying lobster/core/schemas/validation.py -> build/lib/lobster/core/schemas 2026-01-12T14:50:17,013 copying lobster/core/schemas/transcriptomics.py -> build/lib/lobster/core/schemas 2026-01-12T14:50:17,016 copying lobster/core/schemas/metagenomics.py -> build/lib/lobster/core/schemas 2026-01-12T14:50:17,020 copying lobster/core/schemas/metabolomics.py -> build/lib/lobster/core/schemas 2026-01-12T14:50:17,022 copying lobster/core/schemas/publication_queue.py -> build/lib/lobster/core/schemas 2026-01-12T14:50:17,025 copying lobster/core/schemas/ontology.py -> build/lib/lobster/core/schemas 2026-01-12T14:50:17,027 copying lobster/core/schemas/protein_structure.py -> build/lib/lobster/core/schemas 2026-01-12T14:50:17,030 copying lobster/core/schemas/download_urls.py -> build/lib/lobster/core/schemas 2026-01-12T14:50:17,033 copying lobster/core/schemas/__init__.py -> build/lib/lobster/core/schemas 2026-01-12T14:50:17,035 copying lobster/core/schemas/sra.py -> build/lib/lobster/core/schemas 2026-01-12T14:50:17,038 copying lobster/core/schemas/database_mappings.py -> build/lib/lobster/core/schemas 2026-01-12T14:50:17,041 copying lobster/core/schemas/download_queue.py -> build/lib/lobster/core/schemas 2026-01-12T14:50:17,044 copying lobster/core/schemas/proteomics.py -> build/lib/lobster/core/schemas 2026-01-12T14:50:17,047 creating build/lib/lobster/core/utils 2026-01-12T14:50:17,048 copying lobster/core/utils/h5ad_utils.py -> build/lib/lobster/core/utils 2026-01-12T14:50:17,051 copying lobster/core/utils/__init__.py -> build/lib/lobster/core/utils 2026-01-12T14:50:17,053 creating build/lib/lobster/core/interfaces 2026-01-12T14:50:17,054 copying lobster/core/interfaces/adapter.py -> build/lib/lobster/core/interfaces 2026-01-12T14:50:17,057 copying lobster/core/interfaces/validator.py -> build/lib/lobster/core/interfaces 2026-01-12T14:50:17,059 copying lobster/core/interfaces/base_client.py -> build/lib/lobster/core/interfaces 2026-01-12T14:50:17,062 copying lobster/core/interfaces/backend.py -> build/lib/lobster/core/interfaces 2026-01-12T14:50:17,064 copying lobster/core/interfaces/__init__.py -> build/lib/lobster/core/interfaces 2026-01-12T14:50:17,066 copying lobster/core/interfaces/download_service.py -> build/lib/lobster/core/interfaces 2026-01-12T14:50:17,069 creating build/lib/lobster/ui/widgets 2026-01-12T14:50:17,070 copying lobster/ui/widgets/query_prompt.py -> build/lib/lobster/ui/widgets 2026-01-12T14:50:17,072 copying lobster/ui/widgets/error_modal.py -> build/lib/lobster/ui/widgets 2026-01-12T14:50:17,076 copying lobster/ui/widgets/chat_message.py -> build/lib/lobster/ui/widgets 2026-01-12T14:50:17,077 copying lobster/ui/widgets/queue_status_bar.py -> build/lib/lobster/ui/widgets 2026-01-12T14:50:17,080 copying lobster/ui/widgets/activity_log.py -> build/lib/lobster/ui/widgets 2026-01-12T14:50:17,082 copying lobster/ui/widgets/results_display.py -> build/lib/lobster/ui/widgets 2026-01-12T14:50:17,084 copying lobster/ui/widgets/connections_panel.py -> build/lib/lobster/ui/widgets 2026-01-12T14:50:17,086 copying lobster/ui/widgets/data_hub.py -> build/lib/lobster/ui/widgets 2026-01-12T14:50:17,089 copying lobster/ui/widgets/token_usage_panel.py -> build/lib/lobster/ui/widgets 2026-01-12T14:50:17,091 copying lobster/ui/widgets/__init__.py -> build/lib/lobster/ui/widgets 2026-01-12T14:50:17,093 copying lobster/ui/widgets/agents_panel.py -> build/lib/lobster/ui/widgets 2026-01-12T14:50:17,096 copying lobster/ui/widgets/adapters_panel.py -> build/lib/lobster/ui/widgets 2026-01-12T14:50:17,099 copying lobster/ui/widgets/plot_preview.py -> build/lib/lobster/ui/widgets 2026-01-12T14:50:17,101 copying lobster/ui/widgets/queue_panel.py -> build/lib/lobster/ui/widgets 2026-01-12T14:50:17,103 copying lobster/ui/widgets/system_info.py -> build/lib/lobster/ui/widgets 2026-01-12T14:50:17,106 copying lobster/ui/widgets/modality_list.py -> build/lib/lobster/ui/widgets 2026-01-12T14:50:17,108 copying lobster/ui/widgets/status_bar.py -> build/lib/lobster/ui/widgets 2026-01-12T14:50:17,111 creating build/lib/lobster/ui/callbacks 2026-01-12T14:50:17,112 copying lobster/ui/callbacks/__init__.py -> build/lib/lobster/ui/callbacks 2026-01-12T14:50:17,114 copying lobster/ui/callbacks/textual_callback.py -> build/lib/lobster/ui/callbacks 2026-01-12T14:50:17,118 creating build/lib/lobster/ui/screens 2026-01-12T14:50:17,119 copying lobster/ui/screens/analysis_screen.py -> build/lib/lobster/ui/screens 2026-01-12T14:50:17,122 copying lobster/ui/screens/__init__.py -> build/lib/lobster/ui/screens 2026-01-12T14:50:17,124 creating build/lib/lobster/ui/formatters 2026-01-12T14:50:17,126 copying lobster/ui/formatters/__init__.py -> build/lib/lobster/ui/formatters 2026-01-12T14:50:17,128 creating build/lib/lobster/ui/services 2026-01-12T14:50:17,129 copying lobster/ui/services/__init__.py -> build/lib/lobster/ui/services 2026-01-12T14:50:17,131 copying lobster/ui/services/error_service.py -> build/lib/lobster/ui/services 2026-01-12T14:50:17,134 creating build/lib/lobster/ui/components 2026-01-12T14:50:17,136 copying lobster/ui/components/status_display.py -> build/lib/lobster/ui/components 2026-01-12T14:50:17,139 copying lobster/ui/components/multi_progress.py -> build/lib/lobster/ui/components 2026-01-12T14:50:17,142 copying lobster/ui/components/file_tree.py -> build/lib/lobster/ui/components 2026-01-12T14:50:17,145 copying lobster/ui/components/parallel_workers_progress.py -> build/lib/lobster/ui/components 2026-01-12T14:50:17,148 copying lobster/ui/components/__init__.py -> build/lib/lobster/ui/components 2026-01-12T14:50:17,150 creating build/lib/lobster/services/data_management 2026-01-12T14:50:17,151 copying lobster/services/data_management/modality_detection_service.py -> build/lib/lobster/services/data_management 2026-01-12T14:50:17,154 copying lobster/services/data_management/concatenation_service.py -> build/lib/lobster/services/data_management 2026-01-12T14:50:17,158 copying lobster/services/data_management/__init__.py -> build/lib/lobster/services/data_management 2026-01-12T14:50:17,159 copying lobster/services/data_management/modality_management_service.py -> build/lib/lobster/services/data_management 2026-01-12T14:50:17,162 copying lobster/services/data_management/strategy_recommendation_service.py -> build/lib/lobster/services/data_management 2026-01-12T14:50:17,165 creating build/lib/lobster/services/metadata 2026-01-12T14:50:17,166 copying lobster/services/metadata/manual_annotation_service.py -> build/lib/lobster/services/metadata 2026-01-12T14:50:17,169 copying lobster/services/metadata/metadata_validation_service.py -> build/lib/lobster/services/metadata 2026-01-12T14:50:17,172 copying lobster/services/metadata/__init__.py -> build/lib/lobster/services/metadata 2026-01-12T14:50:17,174 copying lobster/services/metadata/identifier_provenance_service.py -> build/lib/lobster/services/metadata 2026-01-12T14:50:17,177 copying lobster/services/metadata/sample_grouping_service.py -> build/lib/lobster/services/metadata 2026-01-12T14:50:17,180 copying lobster/services/metadata/metadata_standardization_service.py -> build/lib/lobster/services/metadata 2026-01-12T14:50:17,183 creating build/lib/lobster/services/orchestration 2026-01-12T14:50:17,184 copying lobster/services/orchestration/__init__.py -> build/lib/lobster/services/orchestration 2026-01-12T14:50:17,186 copying lobster/services/orchestration/publication_processing_service.py -> build/lib/lobster/services/orchestration 2026-01-12T14:50:17,191 creating build/lib/lobster/services/ml 2026-01-12T14:50:17,192 copying lobster/services/ml/__init__.py -> build/lib/lobster/services/ml 2026-01-12T14:50:17,195 creating build/lib/lobster/services/analysis 2026-01-12T14:50:17,196 copying lobster/services/analysis/enhanced_singlecell_service.py -> build/lib/lobster/services/analysis 2026-01-12T14:50:17,200 copying lobster/services/analysis/scvi_embedding_service.py -> build/lib/lobster/services/analysis 2026-01-12T14:50:17,202 copying lobster/services/analysis/differential_formula_service.py -> build/lib/lobster/services/analysis 2026-01-12T14:50:17,206 copying lobster/services/analysis/structure_analysis_service.py -> build/lib/lobster/services/analysis 2026-01-12T14:50:17,209 copying lobster/services/analysis/bulk_rnaseq_service.py -> build/lib/lobster/services/analysis 2026-01-12T14:50:17,212 copying lobster/services/analysis/clustering_service.py -> build/lib/lobster/services/analysis 2026-01-12T14:50:17,216 copying lobster/services/analysis/__init__.py -> build/lib/lobster/services/analysis 2026-01-12T14:50:17,218 copying lobster/services/analysis/pseudobulk_service.py -> build/lib/lobster/services/analysis 2026-01-12T14:50:17,221 creating build/lib/lobster/services/visualization 2026-01-12T14:50:17,223 copying lobster/services/visualization/visualization_service.py -> build/lib/lobster/services/visualization 2026-01-12T14:50:17,227 copying lobster/services/visualization/pymol_visualization_service.py -> build/lib/lobster/services/visualization 2026-01-12T14:50:17,230 copying lobster/services/visualization/__init__.py -> build/lib/lobster/services/visualization 2026-01-12T14:50:17,232 copying lobster/services/visualization/bulk_visualization_service.py -> build/lib/lobster/services/visualization 2026-01-12T14:50:17,236 creating build/lib/lobster/services/quality 2026-01-12T14:50:17,237 copying lobster/services/quality/quality_service.py -> build/lib/lobster/services/quality 2026-01-12T14:50:17,240 copying lobster/services/quality/preprocessing_service.py -> build/lib/lobster/services/quality 2026-01-12T14:50:17,243 copying lobster/services/quality/__init__.py -> build/lib/lobster/services/quality 2026-01-12T14:50:17,246 creating build/lib/lobster/services/data_access 2026-01-12T14:50:17,248 copying lobster/services/data_access/pride_download_service.py -> build/lib/lobster/services/data_access 2026-01-12T14:50:17,251 copying lobster/services/data_access/geo_fallback_service.py -> build/lib/lobster/services/data_access 2026-01-12T14:50:17,254 copying lobster/services/data_access/massive_download_service.py -> build/lib/lobster/services/data_access 2026-01-12T14:50:17,257 copying lobster/services/data_access/docling_service.py -> build/lib/lobster/services/data_access 2026-01-12T14:50:17,261 copying lobster/services/data_access/__init__.py -> build/lib/lobster/services/data_access 2026-01-12T14:50:17,263 copying lobster/services/data_access/content_access_service.py -> build/lib/lobster/services/data_access 2026-01-12T14:50:17,267 copying lobster/services/data_access/geo_download_service.py -> build/lib/lobster/services/data_access 2026-01-12T14:50:17,270 copying lobster/services/data_access/workspace_content_service.py -> build/lib/lobster/services/data_access 2026-01-12T14:50:17,273 copying lobster/services/data_access/protein_structure_fetch_service.py -> build/lib/lobster/services/data_access 2026-01-12T14:50:17,276 copying lobster/services/data_access/sra_download_service.py -> build/lib/lobster/services/data_access 2026-01-12T14:50:17,279 copying lobster/services/data_access/geo_service.py -> build/lib/lobster/services/data_access 2026-01-12T14:50:17,286 creating build/lib/lobster/services/templates 2026-01-12T14:50:17,288 copying lobster/services/templates/annotation_templates.py -> build/lib/lobster/services/templates 2026-01-12T14:50:17,291 copying lobster/services/templates/__init__.py -> build/lib/lobster/services/templates 2026-01-12T14:50:17,293 creating build/lib/lobster/services/execution 2026-01-12T14:50:17,294 copying lobster/services/execution/execution_context_builder.py -> build/lib/lobster/services/execution 2026-01-12T14:50:17,297 copying lobster/services/execution/custom_code_execution_service.py -> build/lib/lobster/services/execution 2026-01-12T14:50:17,300 copying lobster/services/execution/__init__.py -> build/lib/lobster/services/execution 2026-01-12T14:50:17,303 creating build/lib/lobster/services/metadata/protocol_extraction 2026-01-12T14:50:17,304 copying lobster/services/metadata/protocol_extraction/base.py -> build/lib/lobster/services/metadata/protocol_extraction 2026-01-12T14:50:17,306 copying lobster/services/metadata/protocol_extraction/__init__.py -> build/lib/lobster/services/metadata/protocol_extraction 2026-01-12T14:50:17,308 creating build/lib/lobster/services/metadata/protocol_extraction/mass_spec 2026-01-12T14:50:17,309 copying lobster/services/metadata/protocol_extraction/mass_spec/service.py -> build/lib/lobster/services/metadata/protocol_extraction/mass_spec 2026-01-12T14:50:17,312 copying lobster/services/metadata/protocol_extraction/mass_spec/__init__.py -> build/lib/lobster/services/metadata/protocol_extraction/mass_spec 2026-01-12T14:50:17,314 copying lobster/services/metadata/protocol_extraction/mass_spec/details.py -> build/lib/lobster/services/metadata/protocol_extraction/mass_spec 2026-01-12T14:50:17,316 creating build/lib/lobster/services/metadata/protocol_extraction/amplicon 2026-01-12T14:50:17,317 copying lobster/services/metadata/protocol_extraction/amplicon/service.py -> build/lib/lobster/services/metadata/protocol_extraction/amplicon 2026-01-12T14:50:17,320 copying lobster/services/metadata/protocol_extraction/amplicon/__init__.py -> build/lib/lobster/services/metadata/protocol_extraction/amplicon 2026-01-12T14:50:17,323 copying lobster/services/metadata/protocol_extraction/amplicon/details.py -> build/lib/lobster/services/metadata/protocol_extraction/amplicon 2026-01-12T14:50:17,326 creating build/lib/lobster/services/metadata/protocol_extraction/rnaseq 2026-01-12T14:50:17,327 copying lobster/services/metadata/protocol_extraction/rnaseq/service.py -> build/lib/lobster/services/metadata/protocol_extraction/rnaseq 2026-01-12T14:50:17,329 copying lobster/services/metadata/protocol_extraction/rnaseq/__init__.py -> build/lib/lobster/services/metadata/protocol_extraction/rnaseq 2026-01-12T14:50:17,331 copying lobster/services/metadata/protocol_extraction/rnaseq/details.py -> build/lib/lobster/services/metadata/protocol_extraction/rnaseq 2026-01-12T14:50:17,334 creating build/lib/lobster/services/data_access/geo 2026-01-12T14:50:17,335 copying lobster/services/data_access/geo/parser.py -> build/lib/lobster/services/data_access/geo 2026-01-12T14:50:17,340 copying lobster/services/data_access/geo/facade.py -> build/lib/lobster/services/data_access/geo 2026-01-12T14:50:17,341 copying lobster/services/data_access/geo/__init__.py -> build/lib/lobster/services/data_access/geo 2026-01-12T14:50:17,344 copying lobster/services/data_access/geo/downloader.py -> build/lib/lobster/services/data_access/geo 2026-01-12T14:50:17,347 copying lobster/services/data_access/geo/strategy.py -> build/lib/lobster/services/data_access/geo 2026-01-12T14:50:17,349 copying lobster/services/data_access/geo/constants.py -> build/lib/lobster/services/data_access/geo 2026-01-12T14:50:17,352 creating build/lib/lobster/services/data_access/geo/metadata 2026-01-12T14:50:17,353 copying lobster/services/data_access/geo/metadata/__init__.py -> build/lib/lobster/services/data_access/geo/metadata 2026-01-12T14:50:17,356 creating build/lib/lobster/services/data_access/geo/utils 2026-01-12T14:50:17,357 copying lobster/services/data_access/geo/utils/__init__.py -> build/lib/lobster/services/data_access/geo/utils 2026-01-12T14:50:17,359 creating build/lib/lobster/services/data_access/geo/sample 2026-01-12T14:50:17,360 copying lobster/services/data_access/geo/sample/__init__.py -> build/lib/lobster/services/data_access/geo/sample 2026-01-12T14:50:17,363 creating build/lib/lobster/services/data_access/geo/loaders 2026-01-12T14:50:17,364 copying lobster/services/data_access/geo/loaders/__init__.py -> build/lib/lobster/services/data_access/geo/loaders 2026-01-12T14:50:17,366 copying lobster/services/data_access/geo/loaders/tenx.py -> build/lib/lobster/services/data_access/geo/loaders 2026-01-12T14:50:17,370 creating build/lib/lobster/agents/data_expert 2026-01-12T14:50:17,371 copying lobster/agents/data_expert/assistant.py -> build/lib/lobster/agents/data_expert 2026-01-12T14:50:17,374 copying lobster/agents/data_expert/config.py -> build/lib/lobster/agents/data_expert 2026-01-12T14:50:17,376 copying lobster/agents/data_expert/data_expert.py -> build/lib/lobster/agents/data_expert 2026-01-12T14:50:17,380 copying lobster/agents/data_expert/state.py -> build/lib/lobster/agents/data_expert 2026-01-12T14:50:17,382 copying lobster/agents/data_expert/__init__.py -> build/lib/lobster/agents/data_expert 2026-01-12T14:50:17,384 copying lobster/agents/data_expert/prompts.py -> build/lib/lobster/agents/data_expert 2026-01-12T14:50:17,387 creating build/lib/lobster/agents/research 2026-01-12T14:50:17,388 copying lobster/agents/research/config.py -> build/lib/lobster/agents/research 2026-01-12T14:50:17,391 copying lobster/agents/research/state.py -> build/lib/lobster/agents/research 2026-01-12T14:50:17,393 copying lobster/agents/research/__init__.py -> build/lib/lobster/agents/research 2026-01-12T14:50:17,395 copying lobster/agents/research/research_agent.py -> build/lib/lobster/agents/research 2026-01-12T14:50:17,399 copying lobster/agents/research/prompts.py -> build/lib/lobster/agents/research 2026-01-12T14:50:17,403 creating build/lib/lobster/agents/proteomics 2026-01-12T14:50:17,404 copying lobster/agents/proteomics/state.py -> build/lib/lobster/agents/proteomics 2026-01-12T14:50:17,406 copying lobster/agents/proteomics/__init__.py -> build/lib/lobster/agents/proteomics 2026-01-12T14:50:17,409 creating build/lib/lobster/agents/transcriptomics 2026-01-12T14:50:17,410 copying lobster/agents/transcriptomics/transcriptomics_expert.py -> build/lib/lobster/agents/transcriptomics 2026-01-12T14:50:17,413 copying lobster/agents/transcriptomics/de_analysis_expert.py -> build/lib/lobster/agents/transcriptomics 2026-01-12T14:50:17,418 copying lobster/agents/transcriptomics/shared_tools.py -> build/lib/lobster/agents/transcriptomics 2026-01-12T14:50:17,421 copying lobster/agents/transcriptomics/config.py -> build/lib/lobster/agents/transcriptomics 2026-01-12T14:50:17,424 copying lobster/agents/transcriptomics/state.py -> build/lib/lobster/agents/transcriptomics 2026-01-12T14:50:17,426 copying lobster/agents/transcriptomics/__init__.py -> build/lib/lobster/agents/transcriptomics 2026-01-12T14:50:17,428 copying lobster/agents/transcriptomics/prompts.py -> build/lib/lobster/agents/transcriptomics 2026-01-12T14:50:17,430 copying lobster/agents/transcriptomics/annotation_expert.py -> build/lib/lobster/agents/transcriptomics 2026-01-12T14:50:17,434 creating build/lib/lobster/agents/archive 2026-01-12T14:50:17,435 copying lobster/agents/archive/research_agent_assistant.py -> build/lib/lobster/agents/archive 2026-01-12T14:50:17,439 creating build/lib/lobster/agents/langgraph_supervisor 2026-01-12T14:50:17,440 copying lobster/agents/langgraph_supervisor/handoff.py -> build/lib/lobster/agents/langgraph_supervisor 2026-01-12T14:50:17,442 copying lobster/agents/langgraph_supervisor/agent_name.py -> build/lib/lobster/agents/langgraph_supervisor 2026-01-12T14:50:17,445 copying lobster/agents/langgraph_supervisor/__init__.py -> build/lib/lobster/agents/langgraph_supervisor 2026-01-12T14:50:17,447 copying lobster/agents/langgraph_supervisor/supervisor.py -> build/lib/lobster/agents/langgraph_supervisor 2026-01-12T14:50:17,449 running egg_info 2026-01-12T14:50:17,461 writing lobster_ai.egg-info/PKG-INFO 2026-01-12T14:50:17,492 writing dependency_links to lobster_ai.egg-info/dependency_links.txt 2026-01-12T14:50:17,494 writing entry points to lobster_ai.egg-info/entry_points.txt 2026-01-12T14:50:17,514 writing requirements to lobster_ai.egg-info/requires.txt 2026-01-12T14:50:17,515 writing top-level names to lobster_ai.egg-info/top_level.txt 2026-01-12T14:50:17,649 reading manifest file 'lobster_ai.egg-info/SOURCES.txt' 2026-01-12T14:50:17,666 adding license file 'LICENSE' 2026-01-12T14:50:17,681 writing manifest file 'lobster_ai.egg-info/SOURCES.txt' 2026-01-12T14:50:17,784 copying lobster/config/disease_ontology.json -> build/lib/lobster/config 2026-01-12T14:50:17,787 creating build/lib/lobster/services/metadata/protocol_extraction/amplicon/resources 2026-01-12T14:50:17,788 copying lobster/services/metadata/protocol_extraction/amplicon/resources/primers.json -> build/lib/lobster/services/metadata/protocol_extraction/amplicon/resources 2026-01-12T14:50:17,829 installing to build/bdist.linux-armv7l/wheel 2026-01-12T14:50:17,830 running install 2026-01-12T14:50:17,853 running install_lib 2026-01-12T14:50:17,859 creating build/bdist.linux-armv7l/wheel 2026-01-12T14:50:17,862 creating build/bdist.linux-armv7l/wheel/lobster 2026-01-12T14:50:17,864 creating build/bdist.linux-armv7l/wheel/lobster/config 2026-01-12T14:50:17,866 creating build/bdist.linux-armv7l/wheel/lobster/config/providers 2026-01-12T14:50:17,868 copying build/lib/lobster/config/providers/ollama_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers 2026-01-12T14:50:17,870 copying build/lib/lobster/config/providers/bedrock_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers 2026-01-12T14:50:17,873 copying build/lib/lobster/config/providers/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers 2026-01-12T14:50:17,875 copying build/lib/lobster/config/providers/registry.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers 2026-01-12T14:50:17,878 copying build/lib/lobster/config/providers/gemini_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers 2026-01-12T14:50:17,880 copying build/lib/lobster/config/providers/base_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers 2026-01-12T14:50:17,883 copying build/lib/lobster/config/providers/anthropic_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/config/providers 2026-01-12T14:50:17,885 copying build/lib/lobster/config/supervisor_config.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-12T14:50:17,888 copying build/lib/lobster/config/agent_config.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-12T14:50:17,891 copying build/lib/lobster/config/ollama_service.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-12T14:50:17,894 copying build/lib/lobster/config/workspace_config.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-12T14:50:17,897 copying build/lib/lobster/config/base_config.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-12T14:50:17,899 copying build/lib/lobster/config/ssl_setup.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-12T14:50:17,902 copying build/lib/lobster/config/version_check.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-12T14:50:17,906 copying build/lib/lobster/config/llm_factory.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-12T14:50:17,908 copying build/lib/lobster/config/global_config.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-12T14:50:17,911 copying build/lib/lobster/config/provider_setup.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-12T14:50:17,913 copying build/lib/lobster/config/config_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-12T14:50:17,916 copying build/lib/lobster/config/agent_registry.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-12T14:50:17,920 copying build/lib/lobster/config/model_service.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-12T14:50:17,922 copying build/lib/lobster/config/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-12T14:50:17,924 copying build/lib/lobster/config/settings.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-12T14:50:17,928 copying build/lib/lobster/config/agent_capabilities.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-12T14:50:17,931 copying build/lib/lobster/config/disease_ontology.json -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-12T14:50:17,933 copying build/lib/lobster/config/subscription_tiers.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-12T14:50:17,936 copying build/lib/lobster/config/constants.py -> build/bdist.linux-armv7l/wheel/./lobster/config 2026-01-12T14:50:17,938 copying build/lib/lobster/version.py -> build/bdist.linux-armv7l/wheel/./lobster 2026-01-12T14:50:17,941 creating build/bdist.linux-armv7l/wheel/lobster/utils 2026-01-12T14:50:17,942 copying build/lib/lobster/utils/system.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-12T14:50:17,944 copying build/lib/lobster/utils/callbacks.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-12T14:50:17,949 copying build/lib/lobster/utils/json_extractor.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-12T14:50:17,952 copying build/lib/lobster/utils/file_analyzer.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-12T14:50:17,955 copying build/lib/lobster/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-12T14:50:17,957 copying build/lib/lobster/utils/ssl_utils.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-12T14:50:17,960 copying build/lib/lobster/utils/error_handlers.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-12T14:50:17,963 copying build/lib/lobster/utils/file_naming.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-12T14:50:17,966 copying build/lib/lobster/utils/logger.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-12T14:50:17,968 copying build/lib/lobster/utils/deviance.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-12T14:50:17,970 copying build/lib/lobster/utils/progress_wrapper.py -> build/bdist.linux-armv7l/wheel/./lobster/utils 2026-01-12T14:50:17,973 creating build/bdist.linux-armv7l/wheel/lobster/cli_internal 2026-01-12T14:50:17,975 creating build/bdist.linux-armv7l/wheel/lobster/cli_internal/utils 2026-01-12T14:50:17,976 copying build/lib/lobster/cli_internal/utils/path_resolution.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/utils 2026-01-12T14:50:17,979 copying build/lib/lobster/cli_internal/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/utils 2026-01-12T14:50:17,981 copying build/lib/lobster/cli_internal/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal 2026-01-12T14:50:17,984 creating build/bdist.linux-armv7l/wheel/lobster/cli_internal/commands 2026-01-12T14:50:17,985 copying build/lib/lobster/cli_internal/commands/output_adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands 2026-01-12T14:50:17,988 creating build/bdist.linux-armv7l/wheel/lobster/cli_internal/commands/heavy 2026-01-12T14:50:17,989 copying build/lib/lobster/cli_internal/commands/heavy/visualization_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/heavy 2026-01-12T14:50:17,992 copying build/lib/lobster/cli_internal/commands/heavy/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/heavy 2026-01-12T14:50:17,994 copying build/lib/lobster/cli_internal/commands/heavy/modality_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/heavy 2026-01-12T14:50:17,997 copying build/lib/lobster/cli_internal/commands/heavy/data_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/heavy 2026-01-12T14:50:18,001 creating build/bdist.linux-armv7l/wheel/lobster/cli_internal/commands/light 2026-01-12T14:50:18,002 copying build/lib/lobster/cli_internal/commands/light/workspace_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light 2026-01-12T14:50:18,006 copying build/lib/lobster/cli_internal/commands/light/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light 2026-01-12T14:50:18,008 copying build/lib/lobster/cli_internal/commands/light/pipeline_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light 2026-01-12T14:50:18,011 copying build/lib/lobster/cli_internal/commands/light/queue_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light 2026-01-12T14:50:18,014 copying build/lib/lobster/cli_internal/commands/light/config_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light 2026-01-12T14:50:18,017 copying build/lib/lobster/cli_internal/commands/light/metadata_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light 2026-01-12T14:50:18,020 copying build/lib/lobster/cli_internal/commands/light/file_commands.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands/light 2026-01-12T14:50:18,023 copying build/lib/lobster/cli_internal/commands/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/cli_internal/commands 2026-01-12T14:50:18,026 copying build/lib/lobster/_version.py -> build/bdist.linux-armv7l/wheel/./lobster 2026-01-12T14:50:18,028 copying build/lib/lobster/__main__.py -> build/bdist.linux-armv7l/wheel/./lobster 2026-01-12T14:50:18,031 creating build/bdist.linux-armv7l/wheel/lobster/lobster_cloud 2026-01-12T14:50:18,032 copying build/lib/lobster/lobster_cloud/client.py -> build/bdist.linux-armv7l/wheel/./lobster/lobster_cloud 2026-01-12T14:50:18,035 copying build/lib/lobster/lobster_cloud/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/lobster_cloud 2026-01-12T14:50:18,037 copying build/lib/lobster/cli.py -> build/bdist.linux-armv7l/wheel/./lobster 2026-01-12T14:50:18,046 creating build/bdist.linux-armv7l/wheel/lobster/tools 2026-01-12T14:50:18,049 creating build/bdist.linux-armv7l/wheel/lobster/tools/providers 2026-01-12T14:50:18,050 copying build/lib/lobster/tools/providers/biorxiv_medrxiv_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-12T14:50:18,054 copying build/lib/lobster/tools/providers/geo_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-12T14:50:18,058 copying build/lib/lobster/tools/providers/biorxiv_medrxiv_config.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-12T14:50:18,060 copying build/lib/lobster/tools/providers/organism_enum.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-12T14:50:18,063 copying build/lib/lobster/tools/providers/publication_resolver.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-12T14:50:18,068 copying build/lib/lobster/tools/providers/pride_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-12T14:50:18,071 copying build/lib/lobster/tools/providers/webpage_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-12T14:50:18,074 copying build/lib/lobster/tools/providers/massive_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-12T14:50:18,077 copying build/lib/lobster/tools/providers/ncbi_query_builder.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-12T14:50:18,080 copying build/lib/lobster/tools/providers/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-12T14:50:18,082 copying build/lib/lobster/tools/providers/pdb_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-12T14:50:18,085 copying build/lib/lobster/tools/providers/pmc_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-12T14:50:18,089 copying build/lib/lobster/tools/providers/biopython_entrez_wrapper.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-12T14:50:18,092 copying build/lib/lobster/tools/providers/abstract_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-12T14:50:18,095 copying build/lib/lobster/tools/providers/pride_normalizer.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-12T14:50:18,098 copying build/lib/lobster/tools/providers/geo_utils.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-12T14:50:18,101 copying build/lib/lobster/tools/providers/structure_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-12T14:50:18,103 copying build/lib/lobster/tools/providers/base_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-12T14:50:18,106 copying build/lib/lobster/tools/providers/pubmed_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-12T14:50:18,112 copying build/lib/lobster/tools/providers/provider_registry.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-12T14:50:18,115 copying build/lib/lobster/tools/providers/sra_provider.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/providers 2026-01-12T14:50:18,121 copying build/lib/lobster/tools/expert_handoff_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-12T14:50:18,123 copying build/lib/lobster/tools/gpu_detector.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-12T14:50:18,126 copying build/lib/lobster/tools/geo_parser.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-12T14:50:18,128 copying build/lib/lobster/tools/download_orchestrator.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-12T14:50:18,132 copying build/lib/lobster/tools/workflow_tracker.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-12T14:50:18,135 copying build/lib/lobster/tools/todo_tools.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-12T14:50:18,138 copying build/lib/lobster/tools/custom_code_tool.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-12T14:50:18,140 copying build/lib/lobster/tools/rate_limiter.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-12T14:50:18,144 copying build/lib/lobster/tools/expert_handoff_patterns.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-12T14:50:18,146 copying build/lib/lobster/tools/pipeline_strategy.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-12T14:50:18,149 copying build/lib/lobster/tools/geo_downloader.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-12T14:50:18,151 copying build/lib/lobster/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-12T14:50:18,153 copying build/lib/lobster/tools/enhanced_handoff_tool.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-12T14:50:18,156 copying build/lib/lobster/tools/handoff_tool.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-12T14:50:18,159 creating build/bdist.linux-armv7l/wheel/lobster/tools/archive 2026-01-12T14:50:18,161 copying build/lib/lobster/tools/archive/unified_content_service.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/archive 2026-01-12T14:50:18,165 copying build/lib/lobster/tools/archive/publication_service.py -> build/bdist.linux-armv7l/wheel/./lobster/tools/archive 2026-01-12T14:50:18,167 copying build/lib/lobster/tools/url_transforms.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-12T14:50:18,169 copying build/lib/lobster/tools/workspace_tool.py -> build/bdist.linux-armv7l/wheel/./lobster/tools 2026-01-12T14:50:18,177 creating build/bdist.linux-armv7l/wheel/lobster/core 2026-01-12T14:50:18,178 copying build/lib/lobster/core/notebook_validator.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-12T14:50:18,182 creating build/bdist.linux-armv7l/wheel/lobster/core/identifiers 2026-01-12T14:50:18,184 copying build/lib/lobster/core/identifiers/accession_resolver.py -> build/bdist.linux-armv7l/wheel/./lobster/core/identifiers 2026-01-12T14:50:18,187 copying build/lib/lobster/core/identifiers/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/identifiers 2026-01-12T14:50:18,189 copying build/lib/lobster/core/ir_coverage.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-12T14:50:18,192 copying build/lib/lobster/core/exceptions.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-12T14:50:18,194 copying build/lib/lobster/core/plugin_loader.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-12T14:50:18,197 copying build/lib/lobster/core/provenance.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-12T14:50:18,200 copying build/lib/lobster/core/client.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-12T14:50:18,206 creating build/bdist.linux-armv7l/wheel/lobster/core/backends 2026-01-12T14:50:18,208 copying build/lib/lobster/core/backends/base.py -> build/bdist.linux-armv7l/wheel/./lobster/core/backends 2026-01-12T14:50:18,210 copying build/lib/lobster/core/backends/h5ad_backend.py -> build/bdist.linux-armv7l/wheel/./lobster/core/backends 2026-01-12T14:50:18,214 copying build/lib/lobster/core/backends/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/backends 2026-01-12T14:50:18,216 copying build/lib/lobster/core/backends/mudata_backend.py -> build/bdist.linux-armv7l/wheel/./lobster/core/backends 2026-01-12T14:50:18,219 creating build/bdist.linux-armv7l/wheel/lobster/core/adapters 2026-01-12T14:50:18,220 copying build/lib/lobster/core/adapters/base.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters 2026-01-12T14:50:18,224 copying build/lib/lobster/core/adapters/pseudobulk_adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters 2026-01-12T14:50:18,226 copying build/lib/lobster/core/adapters/proteomics_adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters 2026-01-12T14:50:18,230 copying build/lib/lobster/core/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters 2026-01-12T14:50:18,231 copying build/lib/lobster/core/adapters/protein_structure_adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters 2026-01-12T14:50:18,234 copying build/lib/lobster/core/adapters/transcriptomics_adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/core/adapters 2026-01-12T14:50:18,238 creating build/bdist.linux-armv7l/wheel/lobster/core/schemas 2026-01-12T14:50:18,239 copying build/lib/lobster/core/schemas/database_registry.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-12T14:50:18,242 copying build/lib/lobster/core/schemas/export_schemas.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-12T14:50:18,245 copying build/lib/lobster/core/schemas/validation.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-12T14:50:18,248 copying build/lib/lobster/core/schemas/transcriptomics.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-12T14:50:18,254 copying build/lib/lobster/core/schemas/metagenomics.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-12T14:50:18,258 copying build/lib/lobster/core/schemas/metabolomics.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-12T14:50:18,261 copying build/lib/lobster/core/schemas/publication_queue.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-12T14:50:18,264 copying build/lib/lobster/core/schemas/ontology.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-12T14:50:18,266 copying build/lib/lobster/core/schemas/protein_structure.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-12T14:50:18,270 copying build/lib/lobster/core/schemas/download_urls.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-12T14:50:18,272 copying build/lib/lobster/core/schemas/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-12T14:50:18,274 copying build/lib/lobster/core/schemas/sra.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-12T14:50:18,279 copying build/lib/lobster/core/schemas/database_mappings.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-12T14:50:18,282 copying build/lib/lobster/core/schemas/download_queue.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-12T14:50:18,285 copying build/lib/lobster/core/schemas/proteomics.py -> build/bdist.linux-armv7l/wheel/./lobster/core/schemas 2026-01-12T14:50:18,288 copying build/lib/lobster/core/data_manager_v2.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-12T14:50:18,301 copying build/lib/lobster/core/publication_queue.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-12T14:50:18,305 creating build/bdist.linux-armv7l/wheel/lobster/core/utils 2026-01-12T14:50:18,306 copying build/lib/lobster/core/utils/h5ad_utils.py -> build/bdist.linux-armv7l/wheel/./lobster/core/utils 2026-01-12T14:50:18,309 copying build/lib/lobster/core/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/utils 2026-01-12T14:50:18,311 copying build/lib/lobster/core/plot_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-12T14:50:18,316 copying build/lib/lobster/core/archive_utils.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-12T14:50:18,319 copying build/lib/lobster/core/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-12T14:50:18,321 copying build/lib/lobster/core/analysis_ir.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-12T14:50:18,324 creating build/bdist.linux-armv7l/wheel/lobster/core/interfaces 2026-01-12T14:50:18,326 copying build/lib/lobster/core/interfaces/adapter.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces 2026-01-12T14:50:18,328 copying build/lib/lobster/core/interfaces/validator.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces 2026-01-12T14:50:18,331 copying build/lib/lobster/core/interfaces/base_client.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces 2026-01-12T14:50:18,333 copying build/lib/lobster/core/interfaces/backend.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces 2026-01-12T14:50:18,336 copying build/lib/lobster/core/interfaces/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces 2026-01-12T14:50:18,338 copying build/lib/lobster/core/interfaces/download_service.py -> build/bdist.linux-armv7l/wheel/./lobster/core/interfaces 2026-01-12T14:50:18,341 copying build/lib/lobster/core/config_resolver.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-12T14:50:18,344 copying build/lib/lobster/core/notebook_exporter.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-12T14:50:18,347 copying build/lib/lobster/core/license_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-12T14:50:18,350 copying build/lib/lobster/core/component_registry.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-12T14:50:18,352 copying build/lib/lobster/core/notebook_executor.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-12T14:50:18,355 copying build/lib/lobster/core/download_queue.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-12T14:50:18,357 copying build/lib/lobster/core/queue_storage.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-12T14:50:18,359 copying build/lib/lobster/core/ris_parser.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-12T14:50:18,363 copying build/lib/lobster/core/workspace.py -> build/bdist.linux-armv7l/wheel/./lobster/core 2026-01-12T14:50:18,365 creating build/bdist.linux-armv7l/wheel/lobster/ui 2026-01-12T14:50:18,366 copying build/lib/lobster/ui/console_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/ui 2026-01-12T14:50:18,370 creating build/bdist.linux-armv7l/wheel/lobster/ui/widgets 2026-01-12T14:50:18,371 copying build/lib/lobster/ui/widgets/query_prompt.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-12T14:50:18,373 copying build/lib/lobster/ui/widgets/error_modal.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-12T14:50:18,376 copying build/lib/lobster/ui/widgets/chat_message.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-12T14:50:18,377 copying build/lib/lobster/ui/widgets/queue_status_bar.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-12T14:50:18,380 copying build/lib/lobster/ui/widgets/activity_log.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-12T14:50:18,382 copying build/lib/lobster/ui/widgets/results_display.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-12T14:50:18,384 copying build/lib/lobster/ui/widgets/connections_panel.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-12T14:50:18,386 copying build/lib/lobster/ui/widgets/data_hub.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-12T14:50:18,389 copying build/lib/lobster/ui/widgets/token_usage_panel.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-12T14:50:18,391 copying build/lib/lobster/ui/widgets/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-12T14:50:18,393 copying build/lib/lobster/ui/widgets/agents_panel.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-12T14:50:18,396 copying build/lib/lobster/ui/widgets/adapters_panel.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-12T14:50:18,398 copying build/lib/lobster/ui/widgets/plot_preview.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-12T14:50:18,401 copying build/lib/lobster/ui/widgets/queue_panel.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-12T14:50:18,403 copying build/lib/lobster/ui/widgets/system_info.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-12T14:50:18,406 copying build/lib/lobster/ui/widgets/modality_list.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-12T14:50:18,408 copying build/lib/lobster/ui/widgets/status_bar.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/widgets 2026-01-12T14:50:18,410 copying build/lib/lobster/ui/progress_manager.py -> build/bdist.linux-armv7l/wheel/./lobster/ui 2026-01-12T14:50:18,413 copying build/lib/lobster/ui/live_dashboard.py -> build/bdist.linux-armv7l/wheel/./lobster/ui 2026-01-12T14:50:18,416 creating build/bdist.linux-armv7l/wheel/lobster/ui/callbacks 2026-01-12T14:50:18,417 copying build/lib/lobster/ui/callbacks/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/callbacks 2026-01-12T14:50:18,419 copying build/lib/lobster/ui/callbacks/textual_callback.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/callbacks 2026-01-12T14:50:18,422 copying build/lib/lobster/ui/themes.py -> build/bdist.linux-armv7l/wheel/./lobster/ui 2026-01-12T14:50:18,424 copying build/lib/lobster/ui/os_app.py -> build/bdist.linux-armv7l/wheel/./lobster/ui 2026-01-12T14:50:18,426 creating build/bdist.linux-armv7l/wheel/lobster/ui/screens 2026-01-12T14:50:18,427 copying build/lib/lobster/ui/screens/analysis_screen.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/screens 2026-01-12T14:50:18,432 copying build/lib/lobster/ui/screens/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/screens 2026-01-12T14:50:18,433 copying build/lib/lobster/ui/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui 2026-01-12T14:50:18,435 copying build/lib/lobster/ui/commands.py -> build/bdist.linux-armv7l/wheel/./lobster/ui 2026-01-12T14:50:18,438 creating build/bdist.linux-armv7l/wheel/lobster/ui/formatters 2026-01-12T14:50:18,439 copying build/lib/lobster/ui/formatters/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/formatters 2026-01-12T14:50:18,442 creating build/bdist.linux-armv7l/wheel/lobster/ui/services 2026-01-12T14:50:18,443 copying build/lib/lobster/ui/services/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/services 2026-01-12T14:50:18,445 copying build/lib/lobster/ui/services/error_service.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/services 2026-01-12T14:50:18,448 creating build/bdist.linux-armv7l/wheel/lobster/ui/components 2026-01-12T14:50:18,449 copying build/lib/lobster/ui/components/status_display.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/components 2026-01-12T14:50:18,452 copying build/lib/lobster/ui/components/multi_progress.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/components 2026-01-12T14:50:18,456 copying build/lib/lobster/ui/components/file_tree.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/components 2026-01-12T14:50:18,459 copying build/lib/lobster/ui/components/parallel_workers_progress.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/components 2026-01-12T14:50:18,462 copying build/lib/lobster/ui/components/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/ui/components 2026-01-12T14:50:18,464 copying build/lib/lobster/main.py -> build/bdist.linux-armv7l/wheel/./lobster 2026-01-12T14:50:18,466 creating build/bdist.linux-armv7l/wheel/lobster/services 2026-01-12T14:50:18,468 creating build/bdist.linux-armv7l/wheel/lobster/services/data_management 2026-01-12T14:50:18,469 copying build/lib/lobster/services/data_management/modality_detection_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_management 2026-01-12T14:50:18,472 copying build/lib/lobster/services/data_management/concatenation_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_management 2026-01-12T14:50:18,476 copying build/lib/lobster/services/data_management/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_management 2026-01-12T14:50:18,478 copying build/lib/lobster/services/data_management/modality_management_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_management 2026-01-12T14:50:18,481 copying build/lib/lobster/services/data_management/strategy_recommendation_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_management 2026-01-12T14:50:18,484 creating build/bdist.linux-armv7l/wheel/lobster/services/metadata 2026-01-12T14:50:18,485 copying build/lib/lobster/services/metadata/manual_annotation_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata 2026-01-12T14:50:18,489 copying build/lib/lobster/services/metadata/metadata_validation_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata 2026-01-12T14:50:18,491 copying build/lib/lobster/services/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata 2026-01-12T14:50:18,493 creating build/bdist.linux-armv7l/wheel/lobster/services/metadata/protocol_extraction 2026-01-12T14:50:18,495 copying build/lib/lobster/services/metadata/protocol_extraction/base.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction 2026-01-12T14:50:18,497 creating build/bdist.linux-armv7l/wheel/lobster/services/metadata/protocol_extraction/mass_spec 2026-01-12T14:50:18,498 copying build/lib/lobster/services/metadata/protocol_extraction/mass_spec/service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/mass_spec 2026-01-12T14:50:18,500 copying build/lib/lobster/services/metadata/protocol_extraction/mass_spec/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/mass_spec 2026-01-12T14:50:18,502 copying build/lib/lobster/services/metadata/protocol_extraction/mass_spec/details.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/mass_spec 2026-01-12T14:50:18,504 creating build/bdist.linux-armv7l/wheel/lobster/services/metadata/protocol_extraction/amplicon 2026-01-12T14:50:18,506 creating build/bdist.linux-armv7l/wheel/lobster/services/metadata/protocol_extraction/amplicon/resources 2026-01-12T14:50:18,507 copying build/lib/lobster/services/metadata/protocol_extraction/amplicon/resources/primers.json -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/amplicon/resources 2026-01-12T14:50:18,510 copying build/lib/lobster/services/metadata/protocol_extraction/amplicon/service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/amplicon 2026-01-12T14:50:18,512 copying build/lib/lobster/services/metadata/protocol_extraction/amplicon/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/amplicon 2026-01-12T14:50:18,514 copying build/lib/lobster/services/metadata/protocol_extraction/amplicon/details.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/amplicon 2026-01-12T14:50:18,517 creating build/bdist.linux-armv7l/wheel/lobster/services/metadata/protocol_extraction/rnaseq 2026-01-12T14:50:18,518 copying build/lib/lobster/services/metadata/protocol_extraction/rnaseq/service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/rnaseq 2026-01-12T14:50:18,520 copying build/lib/lobster/services/metadata/protocol_extraction/rnaseq/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/rnaseq 2026-01-12T14:50:18,522 copying build/lib/lobster/services/metadata/protocol_extraction/rnaseq/details.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction/rnaseq 2026-01-12T14:50:18,524 copying build/lib/lobster/services/metadata/protocol_extraction/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata/protocol_extraction 2026-01-12T14:50:18,526 copying build/lib/lobster/services/metadata/identifier_provenance_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata 2026-01-12T14:50:18,528 copying build/lib/lobster/services/metadata/sample_grouping_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata 2026-01-12T14:50:18,531 copying build/lib/lobster/services/metadata/metadata_standardization_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/metadata 2026-01-12T14:50:18,535 creating build/bdist.linux-armv7l/wheel/lobster/services/orchestration 2026-01-12T14:50:18,536 copying build/lib/lobster/services/orchestration/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/orchestration 2026-01-12T14:50:18,538 copying build/lib/lobster/services/orchestration/publication_processing_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/orchestration 2026-01-12T14:50:18,542 creating build/bdist.linux-armv7l/wheel/lobster/services/ml 2026-01-12T14:50:18,543 copying build/lib/lobster/services/ml/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/ml 2026-01-12T14:50:18,544 copying build/lib/lobster/services/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services 2026-01-12T14:50:18,546 creating build/bdist.linux-armv7l/wheel/lobster/services/analysis 2026-01-12T14:50:18,547 copying build/lib/lobster/services/analysis/enhanced_singlecell_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-12T14:50:18,551 copying build/lib/lobster/services/analysis/scvi_embedding_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-12T14:50:18,553 copying build/lib/lobster/services/analysis/differential_formula_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-12T14:50:18,557 copying build/lib/lobster/services/analysis/structure_analysis_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-12T14:50:18,560 copying build/lib/lobster/services/analysis/bulk_rnaseq_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-12T14:50:18,563 copying build/lib/lobster/services/analysis/clustering_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-12T14:50:18,570 copying build/lib/lobster/services/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-12T14:50:18,571 copying build/lib/lobster/services/analysis/pseudobulk_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/analysis 2026-01-12T14:50:18,575 creating build/bdist.linux-armv7l/wheel/lobster/services/visualization 2026-01-12T14:50:18,576 copying build/lib/lobster/services/visualization/visualization_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/visualization 2026-01-12T14:50:18,580 copying build/lib/lobster/services/visualization/pymol_visualization_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/visualization 2026-01-12T14:50:18,583 copying build/lib/lobster/services/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/visualization 2026-01-12T14:50:18,584 copying build/lib/lobster/services/visualization/bulk_visualization_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/visualization 2026-01-12T14:50:18,587 creating build/bdist.linux-armv7l/wheel/lobster/services/quality 2026-01-12T14:50:18,589 copying build/lib/lobster/services/quality/quality_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/quality 2026-01-12T14:50:18,592 copying build/lib/lobster/services/quality/preprocessing_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/quality 2026-01-12T14:50:18,595 copying build/lib/lobster/services/quality/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/quality 2026-01-12T14:50:18,597 creating build/bdist.linux-armv7l/wheel/lobster/services/data_access 2026-01-12T14:50:18,599 copying build/lib/lobster/services/data_access/pride_download_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-12T14:50:18,601 copying build/lib/lobster/services/data_access/geo_fallback_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-12T14:50:18,604 copying build/lib/lobster/services/data_access/massive_download_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-12T14:50:18,607 copying build/lib/lobster/services/data_access/docling_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-12T14:50:18,610 copying build/lib/lobster/services/data_access/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-12T14:50:18,611 copying build/lib/lobster/services/data_access/content_access_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-12T14:50:18,615 copying build/lib/lobster/services/data_access/geo_download_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-12T14:50:18,618 copying build/lib/lobster/services/data_access/workspace_content_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-12T14:50:18,620 copying build/lib/lobster/services/data_access/protein_structure_fetch_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-12T14:50:18,624 creating build/bdist.linux-armv7l/wheel/lobster/services/data_access/geo 2026-01-12T14:50:18,626 creating build/bdist.linux-armv7l/wheel/lobster/services/data_access/geo/metadata 2026-01-12T14:50:18,627 copying build/lib/lobster/services/data_access/geo/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo/metadata 2026-01-12T14:50:18,629 creating build/bdist.linux-armv7l/wheel/lobster/services/data_access/geo/utils 2026-01-12T14:50:18,630 copying build/lib/lobster/services/data_access/geo/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo/utils 2026-01-12T14:50:18,632 copying build/lib/lobster/services/data_access/geo/parser.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo 2026-01-12T14:50:18,636 copying build/lib/lobster/services/data_access/geo/facade.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo 2026-01-12T14:50:18,637 copying build/lib/lobster/services/data_access/geo/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo 2026-01-12T14:50:18,640 creating build/bdist.linux-armv7l/wheel/lobster/services/data_access/geo/sample 2026-01-12T14:50:18,641 copying build/lib/lobster/services/data_access/geo/sample/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo/sample 2026-01-12T14:50:18,643 copying build/lib/lobster/services/data_access/geo/downloader.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo 2026-01-12T14:50:18,646 copying build/lib/lobster/services/data_access/geo/strategy.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo 2026-01-12T14:50:18,649 creating build/bdist.linux-armv7l/wheel/lobster/services/data_access/geo/loaders 2026-01-12T14:50:18,650 copying build/lib/lobster/services/data_access/geo/loaders/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo/loaders 2026-01-12T14:50:18,652 copying build/lib/lobster/services/data_access/geo/loaders/tenx.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo/loaders 2026-01-12T14:50:18,655 copying build/lib/lobster/services/data_access/geo/constants.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access/geo 2026-01-12T14:50:18,658 copying build/lib/lobster/services/data_access/sra_download_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-12T14:50:18,661 copying build/lib/lobster/services/data_access/geo_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/data_access 2026-01-12T14:50:18,682 creating build/bdist.linux-armv7l/wheel/lobster/services/templates 2026-01-12T14:50:18,683 copying build/lib/lobster/services/templates/annotation_templates.py -> build/bdist.linux-armv7l/wheel/./lobster/services/templates 2026-01-12T14:50:18,688 copying build/lib/lobster/services/templates/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/templates 2026-01-12T14:50:18,691 creating build/bdist.linux-armv7l/wheel/lobster/services/execution 2026-01-12T14:50:18,692 copying build/lib/lobster/services/execution/execution_context_builder.py -> build/bdist.linux-armv7l/wheel/./lobster/services/execution 2026-01-12T14:50:18,695 copying build/lib/lobster/services/execution/custom_code_execution_service.py -> build/bdist.linux-armv7l/wheel/./lobster/services/execution 2026-01-12T14:50:18,699 copying build/lib/lobster/services/execution/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/services/execution 2026-01-12T14:50:18,702 creating build/bdist.linux-armv7l/wheel/lobster/agents 2026-01-12T14:50:18,703 copying build/lib/lobster/agents/draw_graph.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-12T14:50:18,705 copying build/lib/lobster/agents/graph.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-12T14:50:18,709 creating build/bdist.linux-armv7l/wheel/lobster/agents/data_expert 2026-01-12T14:50:18,710 copying build/lib/lobster/agents/data_expert/assistant.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/data_expert 2026-01-12T14:50:18,713 copying build/lib/lobster/agents/data_expert/config.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/data_expert 2026-01-12T14:50:18,716 copying build/lib/lobster/agents/data_expert/data_expert.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/data_expert 2026-01-12T14:50:18,720 copying build/lib/lobster/agents/data_expert/state.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/data_expert 2026-01-12T14:50:18,722 copying build/lib/lobster/agents/data_expert/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/data_expert 2026-01-12T14:50:18,724 copying build/lib/lobster/agents/data_expert/prompts.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/data_expert 2026-01-12T14:50:18,728 creating build/bdist.linux-armv7l/wheel/lobster/agents/research 2026-01-12T14:50:18,729 copying build/lib/lobster/agents/research/config.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/research 2026-01-12T14:50:18,732 copying build/lib/lobster/agents/research/state.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/research 2026-01-12T14:50:18,734 copying build/lib/lobster/agents/research/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/research 2026-01-12T14:50:18,736 copying build/lib/lobster/agents/research/research_agent.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/research 2026-01-12T14:50:18,741 copying build/lib/lobster/agents/research/prompts.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/research 2026-01-12T14:50:18,744 copying build/lib/lobster/agents/state.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-12T14:50:18,748 creating build/bdist.linux-armv7l/wheel/lobster/agents/proteomics 2026-01-12T14:50:18,750 copying build/lib/lobster/agents/proteomics/state.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/proteomics 2026-01-12T14:50:18,752 copying build/lib/lobster/agents/proteomics/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/proteomics 2026-01-12T14:50:18,754 copying build/lib/lobster/agents/visualization_expert.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-12T14:50:18,759 creating build/bdist.linux-armv7l/wheel/lobster/agents/transcriptomics 2026-01-12T14:50:18,760 copying build/lib/lobster/agents/transcriptomics/transcriptomics_expert.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics 2026-01-12T14:50:18,763 copying build/lib/lobster/agents/transcriptomics/de_analysis_expert.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics 2026-01-12T14:50:18,767 copying build/lib/lobster/agents/transcriptomics/shared_tools.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics 2026-01-12T14:50:18,770 copying build/lib/lobster/agents/transcriptomics/config.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics 2026-01-12T14:50:18,772 copying build/lib/lobster/agents/transcriptomics/state.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics 2026-01-12T14:50:18,775 copying build/lib/lobster/agents/transcriptomics/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics 2026-01-12T14:50:18,776 copying build/lib/lobster/agents/transcriptomics/prompts.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics 2026-01-12T14:50:18,779 copying build/lib/lobster/agents/transcriptomics/annotation_expert.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/transcriptomics 2026-01-12T14:50:18,782 creating build/bdist.linux-armv7l/wheel/lobster/agents/archive 2026-01-12T14:50:18,783 copying build/lib/lobster/agents/archive/research_agent_assistant.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/archive 2026-01-12T14:50:18,786 copying build/lib/lobster/agents/supervisor.py -> build/bdist.linux-armv7l/wheel/./lobster/agents 2026-01-12T14:50:18,790 creating build/bdist.linux-armv7l/wheel/lobster/agents/langgraph_supervisor 2026-01-12T14:50:18,791 copying build/lib/lobster/agents/langgraph_supervisor/handoff.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/langgraph_supervisor 2026-01-12T14:50:18,793 copying build/lib/lobster/agents/langgraph_supervisor/agent_name.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/langgraph_supervisor 2026-01-12T14:50:18,795 copying build/lib/lobster/agents/langgraph_supervisor/__init__.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/langgraph_supervisor 2026-01-12T14:50:18,797 copying build/lib/lobster/agents/langgraph_supervisor/supervisor.py -> build/bdist.linux-armv7l/wheel/./lobster/agents/langgraph_supervisor 2026-01-12T14:50:18,800 running install_egg_info 2026-01-12T14:50:18,806 Copying lobster_ai.egg-info to build/bdist.linux-armv7l/wheel/./lobster_ai-0.4.3.6-py3.11.egg-info 2026-01-12T14:50:18,819 running install_scripts 2026-01-12T14:50:18,833 creating build/bdist.linux-armv7l/wheel/lobster_ai-0.4.3.6.dist-info/WHEEL 2026-01-12T14:50:18,836 creating '/tmp/pip-wheel-v0d3897h/.tmp-9ycciri0/lobster_ai-0.4.3.6-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-01-12T14:50:18,838 adding 'lobster/__main__.py' 2026-01-12T14:50:18,840 adding 'lobster/_version.py' 2026-01-12T14:50:18,868 adding 'lobster/cli.py' 2026-01-12T14:50:18,871 adding 'lobster/main.py' 2026-01-12T14:50:18,872 adding 'lobster/version.py' 2026-01-12T14:50:18,874 adding 'lobster/agents/draw_graph.py' 2026-01-12T14:50:18,876 adding 'lobster/agents/graph.py' 2026-01-12T14:50:18,878 adding 'lobster/agents/state.py' 2026-01-12T14:50:18,883 adding 'lobster/agents/supervisor.py' 2026-01-12T14:50:18,886 adding 'lobster/agents/visualization_expert.py' 2026-01-12T14:50:18,889 adding 'lobster/agents/archive/research_agent_assistant.py' 2026-01-12T14:50:18,891 adding 'lobster/agents/data_expert/__init__.py' 2026-01-12T14:50:18,893 adding 'lobster/agents/data_expert/assistant.py' 2026-01-12T14:50:18,896 adding 'lobster/agents/data_expert/config.py' 2026-01-12T14:50:18,902 adding 'lobster/agents/data_expert/data_expert.py' 2026-01-12T14:50:18,904 adding 'lobster/agents/data_expert/prompts.py' 2026-01-12T14:50:18,905 adding 'lobster/agents/data_expert/state.py' 2026-01-12T14:50:18,907 adding 'lobster/agents/langgraph_supervisor/__init__.py' 2026-01-12T14:50:18,908 adding 'lobster/agents/langgraph_supervisor/agent_name.py' 2026-01-12T14:50:18,910 adding 'lobster/agents/langgraph_supervisor/handoff.py' 2026-01-12T14:50:18,913 adding 'lobster/agents/langgraph_supervisor/supervisor.py' 2026-01-12T14:50:18,914 adding 'lobster/agents/proteomics/__init__.py' 2026-01-12T14:50:18,916 adding 'lobster/agents/proteomics/state.py' 2026-01-12T14:50:18,918 adding 'lobster/agents/research/__init__.py' 2026-01-12T14:50:18,919 adding 'lobster/agents/research/config.py' 2026-01-12T14:50:18,922 adding 'lobster/agents/research/prompts.py' 2026-01-12T14:50:18,933 adding 'lobster/agents/research/research_agent.py' 2026-01-12T14:50:18,935 adding 'lobster/agents/research/state.py' 2026-01-12T14:50:18,937 adding 'lobster/agents/transcriptomics/__init__.py' 2026-01-12T14:50:18,941 adding 'lobster/agents/transcriptomics/annotation_expert.py' 2026-01-12T14:50:18,943 adding 'lobster/agents/transcriptomics/config.py' 2026-01-12T14:50:18,951 adding 'lobster/agents/transcriptomics/de_analysis_expert.py' 2026-01-12T14:50:18,954 adding 'lobster/agents/transcriptomics/prompts.py' 2026-01-12T14:50:18,957 adding 'lobster/agents/transcriptomics/shared_tools.py' 2026-01-12T14:50:18,958 adding 'lobster/agents/transcriptomics/state.py' 2026-01-12T14:50:18,962 adding 'lobster/agents/transcriptomics/transcriptomics_expert.py' 2026-01-12T14:50:18,964 adding 'lobster/cli_internal/__init__.py' 2026-01-12T14:50:18,966 adding 'lobster/cli_internal/commands/__init__.py' 2026-01-12T14:50:18,968 adding 'lobster/cli_internal/commands/output_adapter.py' 2026-01-12T14:50:18,969 adding 'lobster/cli_internal/commands/heavy/__init__.py' 2026-01-12T14:50:18,971 adding 'lobster/cli_internal/commands/heavy/data_commands.py' 2026-01-12T14:50:18,973 adding 'lobster/cli_internal/commands/heavy/modality_commands.py' 2026-01-12T14:50:18,975 adding 'lobster/cli_internal/commands/heavy/visualization_commands.py' 2026-01-12T14:50:18,977 adding 'lobster/cli_internal/commands/light/__init__.py' 2026-01-12T14:50:18,980 adding 'lobster/cli_internal/commands/light/config_commands.py' 2026-01-12T14:50:18,983 adding 'lobster/cli_internal/commands/light/file_commands.py' 2026-01-12T14:50:18,985 adding 'lobster/cli_internal/commands/light/metadata_commands.py' 2026-01-12T14:50:18,987 adding 'lobster/cli_internal/commands/light/pipeline_commands.py' 2026-01-12T14:50:18,991 adding 'lobster/cli_internal/commands/light/queue_commands.py' 2026-01-12T14:50:18,994 adding 'lobster/cli_internal/commands/light/workspace_commands.py' 2026-01-12T14:50:18,996 adding 'lobster/cli_internal/utils/__init__.py' 2026-01-12T14:50:18,998 adding 'lobster/cli_internal/utils/path_resolution.py' 2026-01-12T14:50:19,000 adding 'lobster/config/__init__.py' 2026-01-12T14:50:19,002 adding 'lobster/config/agent_capabilities.py' 2026-01-12T14:50:19,005 adding 'lobster/config/agent_config.py' 2026-01-12T14:50:19,007 adding 'lobster/config/agent_registry.py' 2026-01-12T14:50:19,009 adding 'lobster/config/base_config.py' 2026-01-12T14:50:19,011 adding 'lobster/config/config_manager.py' 2026-01-12T14:50:19,012 adding 'lobster/config/constants.py' 2026-01-12T14:50:19,013 adding 'lobster/config/disease_ontology.json' 2026-01-12T14:50:19,015 adding 'lobster/config/global_config.py' 2026-01-12T14:50:19,017 adding 'lobster/config/llm_factory.py' 2026-01-12T14:50:19,019 adding 'lobster/config/model_service.py' 2026-01-12T14:50:19,021 adding 'lobster/config/ollama_service.py' 2026-01-12T14:50:19,022 adding 'lobster/config/provider_setup.py' 2026-01-12T14:50:19,025 adding 'lobster/config/settings.py' 2026-01-12T14:50:19,027 adding 'lobster/config/ssl_setup.py' 2026-01-12T14:50:19,028 adding 'lobster/config/subscription_tiers.py' 2026-01-12T14:50:19,030 adding 'lobster/config/supervisor_config.py' 2026-01-12T14:50:19,032 adding 'lobster/config/version_check.py' 2026-01-12T14:50:19,033 adding 'lobster/config/workspace_config.py' 2026-01-12T14:50:19,035 adding 'lobster/config/providers/__init__.py' 2026-01-12T14:50:19,037 adding 'lobster/config/providers/anthropic_provider.py' 2026-01-12T14:50:19,039 adding 'lobster/config/providers/base_provider.py' 2026-01-12T14:50:19,041 adding 'lobster/config/providers/bedrock_provider.py' 2026-01-12T14:50:19,042 adding 'lobster/config/providers/gemini_provider.py' 2026-01-12T14:50:19,045 adding 'lobster/config/providers/ollama_provider.py' 2026-01-12T14:50:19,047 adding 'lobster/config/providers/registry.py' 2026-01-12T14:50:19,049 adding 'lobster/core/__init__.py' 2026-01-12T14:50:19,051 adding 'lobster/core/analysis_ir.py' 2026-01-12T14:50:19,054 adding 'lobster/core/archive_utils.py' 2026-01-12T14:50:19,064 adding 'lobster/core/client.py' 2026-01-12T14:50:19,066 adding 'lobster/core/component_registry.py' 2026-01-12T14:50:19,069 adding 'lobster/core/config_resolver.py' 2026-01-12T14:50:19,082 adding 'lobster/core/data_manager_v2.py' 2026-01-12T14:50:19,085 adding 'lobster/core/download_queue.py' 2026-01-12T14:50:19,086 adding 'lobster/core/exceptions.py' 2026-01-12T14:50:19,089 adding 'lobster/core/ir_coverage.py' 2026-01-12T14:50:19,092 adding 'lobster/core/license_manager.py' 2026-01-12T14:50:19,094 adding 'lobster/core/notebook_executor.py' 2026-01-12T14:50:19,097 adding 'lobster/core/notebook_exporter.py' 2026-01-12T14:50:19,099 adding 'lobster/core/notebook_validator.py' 2026-01-12T14:50:19,102 adding 'lobster/core/plot_manager.py' 2026-01-12T14:50:19,104 adding 'lobster/core/plugin_loader.py' 2026-01-12T14:50:19,106 adding 'lobster/core/provenance.py' 2026-01-12T14:50:19,109 adding 'lobster/core/publication_queue.py' 2026-01-12T14:50:19,110 adding 'lobster/core/queue_storage.py' 2026-01-12T14:50:19,113 adding 'lobster/core/ris_parser.py' 2026-01-12T14:50:19,114 adding 'lobster/core/workspace.py' 2026-01-12T14:50:19,116 adding 'lobster/core/adapters/__init__.py' 2026-01-12T14:50:19,118 adding 'lobster/core/adapters/base.py' 2026-01-12T14:50:19,121 adding 'lobster/core/adapters/protein_structure_adapter.py' 2026-01-12T14:50:19,124 adding 'lobster/core/adapters/proteomics_adapter.py' 2026-01-12T14:50:19,126 adding 'lobster/core/adapters/pseudobulk_adapter.py' 2026-01-12T14:50:19,130 adding 'lobster/core/adapters/transcriptomics_adapter.py' 2026-01-12T14:50:19,131 adding 'lobster/core/backends/__init__.py' 2026-01-12T14:50:19,133 adding 'lobster/core/backends/base.py' 2026-01-12T14:50:19,137 adding 'lobster/core/backends/h5ad_backend.py' 2026-01-12T14:50:19,139 adding 'lobster/core/backends/mudata_backend.py' 2026-01-12T14:50:19,141 adding 'lobster/core/identifiers/__init__.py' 2026-01-12T14:50:19,144 adding 'lobster/core/identifiers/accession_resolver.py' 2026-01-12T14:50:19,145 adding 'lobster/core/interfaces/__init__.py' 2026-01-12T14:50:19,147 adding 'lobster/core/interfaces/adapter.py' 2026-01-12T14:50:19,149 adding 'lobster/core/interfaces/backend.py' 2026-01-12T14:50:19,150 adding 'lobster/core/interfaces/base_client.py' 2026-01-12T14:50:19,152 adding 'lobster/core/interfaces/download_service.py' 2026-01-12T14:50:19,154 adding 'lobster/core/interfaces/validator.py' 2026-01-12T14:50:19,156 adding 'lobster/core/schemas/__init__.py' 2026-01-12T14:50:19,159 adding 'lobster/core/schemas/database_mappings.py' 2026-01-12T14:50:19,161 adding 'lobster/core/schemas/database_registry.py' 2026-01-12T14:50:19,163 adding 'lobster/core/schemas/download_queue.py' 2026-01-12T14:50:19,165 adding 'lobster/core/schemas/download_urls.py' 2026-01-12T14:50:19,170 adding 'lobster/core/schemas/export_schemas.py' 2026-01-12T14:50:19,174 adding 'lobster/core/schemas/metabolomics.py' 2026-01-12T14:50:19,180 adding 'lobster/core/schemas/metagenomics.py' 2026-01-12T14:50:19,181 adding 'lobster/core/schemas/ontology.py' 2026-01-12T14:50:19,184 adding 'lobster/core/schemas/protein_structure.py' 2026-01-12T14:50:19,187 adding 'lobster/core/schemas/proteomics.py' 2026-01-12T14:50:19,190 adding 'lobster/core/schemas/publication_queue.py' 2026-01-12T14:50:19,195 adding 'lobster/core/schemas/sra.py' 2026-01-12T14:50:19,202 adding 'lobster/core/schemas/transcriptomics.py' 2026-01-12T14:50:19,204 adding 'lobster/core/schemas/validation.py' 2026-01-12T14:50:19,206 adding 'lobster/core/utils/__init__.py' 2026-01-12T14:50:19,208 adding 'lobster/core/utils/h5ad_utils.py' 2026-01-12T14:50:19,210 adding 'lobster/lobster_cloud/__init__.py' 2026-01-12T14:50:19,212 adding 'lobster/lobster_cloud/client.py' 2026-01-12T14:50:19,213 adding 'lobster/services/__init__.py' 2026-01-12T14:50:19,215 adding 'lobster/services/analysis/__init__.py' 2026-01-12T14:50:19,223 adding 'lobster/services/analysis/bulk_rnaseq_service.py' 2026-01-12T14:50:19,233 adding 'lobster/services/analysis/clustering_service.py' 2026-01-12T14:50:19,237 adding 'lobster/services/analysis/differential_formula_service.py' 2026-01-12T14:50:19,243 adding 'lobster/services/analysis/enhanced_singlecell_service.py' 2026-01-12T14:50:19,246 adding 'lobster/services/analysis/pseudobulk_service.py' 2026-01-12T14:50:19,249 adding 'lobster/services/analysis/scvi_embedding_service.py' 2026-01-12T14:50:19,251 adding 'lobster/services/analysis/structure_analysis_service.py' 2026-01-12T14:50:19,253 adding 'lobster/services/data_access/__init__.py' 2026-01-12T14:50:19,261 adding 'lobster/services/data_access/content_access_service.py' 2026-01-12T14:50:19,267 adding 'lobster/services/data_access/docling_service.py' 2026-01-12T14:50:19,270 adding 'lobster/services/data_access/geo_download_service.py' 2026-01-12T14:50:19,273 adding 'lobster/services/data_access/geo_fallback_service.py' 2026-01-12T14:50:19,297 adding 'lobster/services/data_access/geo_service.py' 2026-01-12T14:50:19,301 adding 'lobster/services/data_access/massive_download_service.py' 2026-01-12T14:50:19,303 adding 'lobster/services/data_access/pride_download_service.py' 2026-01-12T14:50:19,305 adding 'lobster/services/data_access/protein_structure_fetch_service.py' 2026-01-12T14:50:19,310 adding 'lobster/services/data_access/sra_download_service.py' 2026-01-12T14:50:19,315 adding 'lobster/services/data_access/workspace_content_service.py' 2026-01-12T14:50:19,317 adding 'lobster/services/data_access/geo/__init__.py' 2026-01-12T14:50:19,318 adding 'lobster/services/data_access/geo/constants.py' 2026-01-12T14:50:19,322 adding 'lobster/services/data_access/geo/downloader.py' 2026-01-12T14:50:19,324 adding 'lobster/services/data_access/geo/facade.py' 2026-01-12T14:50:19,331 adding 'lobster/services/data_access/geo/parser.py' 2026-01-12T14:50:19,333 adding 'lobster/services/data_access/geo/strategy.py' 2026-01-12T14:50:19,335 adding 'lobster/services/data_access/geo/loaders/__init__.py' 2026-01-12T14:50:19,337 adding 'lobster/services/data_access/geo/loaders/tenx.py' 2026-01-12T14:50:19,339 adding 'lobster/services/data_access/geo/metadata/__init__.py' 2026-01-12T14:50:19,341 adding 'lobster/services/data_access/geo/sample/__init__.py' 2026-01-12T14:50:19,342 adding 'lobster/services/data_access/geo/utils/__init__.py' 2026-01-12T14:50:19,343 adding 'lobster/services/data_management/__init__.py' 2026-01-12T14:50:19,350 adding 'lobster/services/data_management/concatenation_service.py' 2026-01-12T14:50:19,352 adding 'lobster/services/data_management/modality_detection_service.py' 2026-01-12T14:50:19,355 adding 'lobster/services/data_management/modality_management_service.py' 2026-01-12T14:50:19,357 adding 'lobster/services/data_management/strategy_recommendation_service.py' 2026-01-12T14:50:19,359 adding 'lobster/services/execution/__init__.py' 2026-01-12T14:50:19,364 adding 'lobster/services/execution/custom_code_execution_service.py' 2026-01-12T14:50:19,365 adding 'lobster/services/execution/execution_context_builder.py' 2026-01-12T14:50:19,367 adding 'lobster/services/metadata/__init__.py' 2026-01-12T14:50:19,369 adding 'lobster/services/metadata/identifier_provenance_service.py' 2026-01-12T14:50:19,373 adding 'lobster/services/metadata/manual_annotation_service.py' 2026-01-12T14:50:19,376 adding 'lobster/services/metadata/metadata_standardization_service.py' 2026-01-12T14:50:19,379 adding 'lobster/services/metadata/metadata_validation_service.py' 2026-01-12T14:50:19,381 adding 'lobster/services/metadata/sample_grouping_service.py' 2026-01-12T14:50:19,383 adding 'lobster/services/metadata/protocol_extraction/__init__.py' 2026-01-12T14:50:19,385 adding 'lobster/services/metadata/protocol_extraction/base.py' 2026-01-12T14:50:19,387 adding 'lobster/services/metadata/protocol_extraction/amplicon/__init__.py' 2026-01-12T14:50:19,389 adding 'lobster/services/metadata/protocol_extraction/amplicon/details.py' 2026-01-12T14:50:19,392 adding 'lobster/services/metadata/protocol_extraction/amplicon/service.py' 2026-01-12T14:50:19,394 adding 'lobster/services/metadata/protocol_extraction/amplicon/resources/primers.json' 2026-01-12T14:50:19,396 adding 'lobster/services/metadata/protocol_extraction/mass_spec/__init__.py' 2026-01-12T14:50:19,398 adding 'lobster/services/metadata/protocol_extraction/mass_spec/details.py' 2026-01-12T14:50:19,400 adding 'lobster/services/metadata/protocol_extraction/mass_spec/service.py' 2026-01-12T14:50:19,401 adding 'lobster/services/metadata/protocol_extraction/rnaseq/__init__.py' 2026-01-12T14:50:19,403 adding 'lobster/services/metadata/protocol_extraction/rnaseq/details.py' 2026-01-12T14:50:19,404 adding 'lobster/services/metadata/protocol_extraction/rnaseq/service.py' 2026-01-12T14:50:19,406 adding 'lobster/services/ml/__init__.py' 2026-01-12T14:50:19,407 adding 'lobster/services/orchestration/__init__.py' 2026-01-12T14:50:19,416 adding 'lobster/services/orchestration/publication_processing_service.py' 2026-01-12T14:50:19,418 adding 'lobster/services/quality/__init__.py' 2026-01-12T14:50:19,422 adding 'lobster/services/quality/preprocessing_service.py' 2026-01-12T14:50:19,426 adding 'lobster/services/quality/quality_service.py' 2026-01-12T14:50:19,428 adding 'lobster/services/templates/__init__.py' 2026-01-12T14:50:19,433 adding 'lobster/services/templates/annotation_templates.py' 2026-01-12T14:50:19,435 adding 'lobster/services/visualization/__init__.py' 2026-01-12T14:50:19,438 adding 'lobster/services/visualization/bulk_visualization_service.py' 2026-01-12T14:50:19,442 adding 'lobster/services/visualization/pymol_visualization_service.py' 2026-01-12T14:50:19,450 adding 'lobster/services/visualization/visualization_service.py' 2026-01-12T14:50:19,452 adding 'lobster/tools/__init__.py' 2026-01-12T14:50:19,454 adding 'lobster/tools/custom_code_tool.py' 2026-01-12T14:50:19,456 adding 'lobster/tools/download_orchestrator.py' 2026-01-12T14:50:19,459 adding 'lobster/tools/enhanced_handoff_tool.py' 2026-01-12T14:50:19,461 adding 'lobster/tools/expert_handoff_manager.py' 2026-01-12T14:50:19,463 adding 'lobster/tools/expert_handoff_patterns.py' 2026-01-12T14:50:19,464 adding 'lobster/tools/geo_downloader.py' 2026-01-12T14:50:19,465 adding 'lobster/tools/geo_parser.py' 2026-01-12T14:50:19,467 adding 'lobster/tools/gpu_detector.py' 2026-01-12T14:50:19,468 adding 'lobster/tools/handoff_tool.py' 2026-01-12T14:50:19,470 adding 'lobster/tools/pipeline_strategy.py' 2026-01-12T14:50:19,474 adding 'lobster/tools/rate_limiter.py' 2026-01-12T14:50:19,476 adding 'lobster/tools/todo_tools.py' 2026-01-12T14:50:19,477 adding 'lobster/tools/url_transforms.py' 2026-01-12T14:50:19,480 adding 'lobster/tools/workflow_tracker.py' 2026-01-12T14:50:19,492 adding 'lobster/tools/workspace_tool.py' 2026-01-12T14:50:19,496 adding 'lobster/tools/archive/publication_service.py' 2026-01-12T14:50:19,499 adding 'lobster/tools/archive/unified_content_service.py' 2026-01-12T14:50:19,501 adding 'lobster/tools/providers/__init__.py' 2026-01-12T14:50:19,503 adding 'lobster/tools/providers/abstract_provider.py' 2026-01-12T14:50:19,505 adding 'lobster/tools/providers/base_provider.py' 2026-01-12T14:50:19,507 adding 'lobster/tools/providers/biopython_entrez_wrapper.py' 2026-01-12T14:50:19,508 adding 'lobster/tools/providers/biorxiv_medrxiv_config.py' 2026-01-12T14:50:19,514 adding 'lobster/tools/providers/biorxiv_medrxiv_provider.py' 2026-01-12T14:50:19,520 adding 'lobster/tools/providers/geo_provider.py' 2026-01-12T14:50:19,522 adding 'lobster/tools/providers/geo_utils.py' 2026-01-12T14:50:19,524 adding 'lobster/tools/providers/massive_provider.py' 2026-01-12T14:50:19,527 adding 'lobster/tools/providers/ncbi_query_builder.py' 2026-01-12T14:50:19,529 adding 'lobster/tools/providers/organism_enum.py' 2026-01-12T14:50:19,531 adding 'lobster/tools/providers/pdb_provider.py' 2026-01-12T14:50:19,538 adding 'lobster/tools/providers/pmc_provider.py' 2026-01-12T14:50:19,540 adding 'lobster/tools/providers/pride_normalizer.py' 2026-01-12T14:50:19,544 adding 'lobster/tools/providers/pride_provider.py' 2026-01-12T14:50:19,546 adding 'lobster/tools/providers/provider_registry.py' 2026-01-12T14:50:19,549 adding 'lobster/tools/providers/publication_resolver.py' 2026-01-12T14:50:19,558 adding 'lobster/tools/providers/pubmed_provider.py' 2026-01-12T14:50:19,565 adding 'lobster/tools/providers/sra_provider.py' 2026-01-12T14:50:19,567 adding 'lobster/tools/providers/structure_provider.py' 2026-01-12T14:50:19,569 adding 'lobster/tools/providers/webpage_provider.py' 2026-01-12T14:50:19,571 adding 'lobster/ui/__init__.py' 2026-01-12T14:50:19,573 adding 'lobster/ui/commands.py' 2026-01-12T14:50:19,575 adding 'lobster/ui/console_manager.py' 2026-01-12T14:50:19,578 adding 'lobster/ui/live_dashboard.py' 2026-01-12T14:50:19,579 adding 'lobster/ui/os_app.py' 2026-01-12T14:50:19,581 adding 'lobster/ui/progress_manager.py' 2026-01-12T14:50:19,583 adding 'lobster/ui/themes.py' 2026-01-12T14:50:19,585 adding 'lobster/ui/callbacks/__init__.py' 2026-01-12T14:50:19,588 adding 'lobster/ui/callbacks/textual_callback.py' 2026-01-12T14:50:19,589 adding 'lobster/ui/components/__init__.py' 2026-01-12T14:50:19,591 adding 'lobster/ui/components/file_tree.py' 2026-01-12T14:50:19,594 adding 'lobster/ui/components/multi_progress.py' 2026-01-12T14:50:19,596 adding 'lobster/ui/components/parallel_workers_progress.py' 2026-01-12T14:50:19,598 adding 'lobster/ui/components/status_display.py' 2026-01-12T14:50:19,600 adding 'lobster/ui/formatters/__init__.py' 2026-01-12T14:50:19,602 adding 'lobster/ui/screens/__init__.py' 2026-01-12T14:50:19,605 adding 'lobster/ui/screens/analysis_screen.py' 2026-01-12T14:50:19,607 adding 'lobster/ui/services/__init__.py' 2026-01-12T14:50:19,609 adding 'lobster/ui/services/error_service.py' 2026-01-12T14:50:19,611 adding 'lobster/ui/widgets/__init__.py' 2026-01-12T14:50:19,612 adding 'lobster/ui/widgets/activity_log.py' 2026-01-12T14:50:19,614 adding 'lobster/ui/widgets/adapters_panel.py' 2026-01-12T14:50:19,615 adding 'lobster/ui/widgets/agents_panel.py' 2026-01-12T14:50:19,616 adding 'lobster/ui/widgets/chat_message.py' 2026-01-12T14:50:19,618 adding 'lobster/ui/widgets/connections_panel.py' 2026-01-12T14:50:19,621 adding 'lobster/ui/widgets/data_hub.py' 2026-01-12T14:50:19,623 adding 'lobster/ui/widgets/error_modal.py' 2026-01-12T14:50:19,624 adding 'lobster/ui/widgets/modality_list.py' 2026-01-12T14:50:19,626 adding 'lobster/ui/widgets/plot_preview.py' 2026-01-12T14:50:19,627 adding 'lobster/ui/widgets/query_prompt.py' 2026-01-12T14:50:19,628 adding 'lobster/ui/widgets/queue_panel.py' 2026-01-12T14:50:19,630 adding 'lobster/ui/widgets/queue_status_bar.py' 2026-01-12T14:50:19,631 adding 'lobster/ui/widgets/results_display.py' 2026-01-12T14:50:19,633 adding 'lobster/ui/widgets/status_bar.py' 2026-01-12T14:50:19,634 adding 'lobster/ui/widgets/system_info.py' 2026-01-12T14:50:19,636 adding 'lobster/ui/widgets/token_usage_panel.py' 2026-01-12T14:50:19,638 adding 'lobster/utils/__init__.py' 2026-01-12T14:50:19,643 adding 'lobster/utils/callbacks.py' 2026-01-12T14:50:19,645 adding 'lobster/utils/deviance.py' 2026-01-12T14:50:19,649 adding 'lobster/utils/error_handlers.py' 2026-01-12T14:50:19,652 adding 'lobster/utils/file_analyzer.py' 2026-01-12T14:50:19,654 adding 'lobster/utils/file_naming.py' 2026-01-12T14:50:19,656 adding 'lobster/utils/json_extractor.py' 2026-01-12T14:50:19,657 adding 'lobster/utils/logger.py' 2026-01-12T14:50:19,659 adding 'lobster/utils/progress_wrapper.py' 2026-01-12T14:50:19,660 adding 'lobster/utils/ssl_utils.py' 2026-01-12T14:50:19,662 adding 'lobster/utils/system.py' 2026-01-12T14:50:19,669 adding 'lobster_ai-0.4.3.6.dist-info/licenses/LICENSE' 2026-01-12T14:50:19,672 adding 'lobster_ai-0.4.3.6.dist-info/METADATA' 2026-01-12T14:50:19,673 adding 'lobster_ai-0.4.3.6.dist-info/WHEEL' 2026-01-12T14:50:19,674 adding 'lobster_ai-0.4.3.6.dist-info/entry_points.txt' 2026-01-12T14:50:19,675 adding 'lobster_ai-0.4.3.6.dist-info/top_level.txt' 2026-01-12T14:50:19,680 adding 'lobster_ai-0.4.3.6.dist-info/RECORD' 2026-01-12T14:50:19,708 removing build/bdist.linux-armv7l/wheel 2026-01-12T14:50:19,888 Building wheel for lobster-ai (pyproject.toml): finished with status 'done' 2026-01-12T14:50:19,926 Created wheel for lobster-ai: filename=lobster_ai-0.4.3.6-py3-none-any.whl size=1390017 sha256=cd61b1b10eedca49752a6bf6fded18e0ae82aadbc6fb197db209817e3759f621 2026-01-12T14:50:19,927 Stored in directory: /tmp/pip-ephem-wheel-cache-tac4jhz6/wheels/35/dd/a6/ebe023442d552cb1b3d260d451effc4ecb07a2093613ff2da0 2026-01-12T14:50:19,953 Successfully built lobster-ai 2026-01-12T14:50:19,990 Removed build tracker: '/tmp/pip-build-tracker-5r9j4_or'