2026-01-12T22:19:52,995 Created temporary directory: /tmp/pip-ephem-wheel-cache-71gssu7q 2026-01-12T22:19:52,997 Created temporary directory: /tmp/pip-build-tracker-hwqtiqqn 2026-01-12T22:19:52,998 Initialized build tracking at /tmp/pip-build-tracker-hwqtiqqn 2026-01-12T22:19:52,998 Created build tracker: /tmp/pip-build-tracker-hwqtiqqn 2026-01-12T22:19:52,999 Entered build tracker: /tmp/pip-build-tracker-hwqtiqqn 2026-01-12T22:19:53,000 Created temporary directory: /tmp/pip-wheel-ka6ye1ap 2026-01-12T22:19:53,003 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-01-12T22:19:53,005 Created temporary directory: /tmp/pip-ephem-wheel-cache-j2j2vke4 2026-01-12T22:19:53,031 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-01-12T22:19:53,035 2 location(s) to search for versions of regvelo: 2026-01-12T22:19:53,035 * https://pypi.org/simple/regvelo/ 2026-01-12T22:19:53,035 * https://www.piwheels.org/simple/regvelo/ 2026-01-12T22:19:53,036 Fetching project page and analyzing links: https://pypi.org/simple/regvelo/ 2026-01-12T22:19:53,036 Getting page https://pypi.org/simple/regvelo/ 2026-01-12T22:19:53,038 Found index url https://pypi.org/simple 2026-01-12T22:19:53,256 Fetched page https://pypi.org/simple/regvelo/ as application/vnd.pypi.simple.v1+json 2026-01-12T22:19:53,259 Skipping link: No binaries permitted for regvelo: https://files.pythonhosted.org/packages/a0/7c/d4a3a0a27b543776005f2a656d8b7d08532ff085ef2632513ef9b9418c60/regvelo-0.3.0-py3-none-any.whl (from https://pypi.org/simple/regvelo/) (requires-python:>=3.10) 2026-01-12T22:19:53,260 Found link https://files.pythonhosted.org/packages/1b/16/716ad1922e61f3422fac2e37bb6592288bb83ba3e9c456d27549eac0024b/regvelo-0.3.0.tar.gz (from https://pypi.org/simple/regvelo/) (requires-python:>=3.10), version: 0.3.0 2026-01-12T22:19:53,261 Skipping link: No binaries permitted for regvelo: https://files.pythonhosted.org/packages/60/a5/e1dc709088f131c9a7ac654dcfc841250ebe9bb1b9f4954fa1acc46df6cc/regvelo-0.4.2-py3-none-any.whl (from https://pypi.org/simple/regvelo/) (requires-python:>=3.10) 2026-01-12T22:19:53,262 Found link https://files.pythonhosted.org/packages/37/9d/b670673a83c4b7b344da1c2a57abb194f5b1f99495a996338bb31a8e1c8a/regvelo-0.4.2.tar.gz (from https://pypi.org/simple/regvelo/) (requires-python:>=3.10), version: 0.4.2 2026-01-12T22:19:53,263 Fetching project page and analyzing links: https://www.piwheels.org/simple/regvelo/ 2026-01-12T22:19:53,264 Getting page https://www.piwheels.org/simple/regvelo/ 2026-01-12T22:19:53,266 Found index url https://www.piwheels.org/simple 2026-01-12T22:19:53,458 Fetched page https://www.piwheels.org/simple/regvelo/ as text/html 2026-01-12T22:19:53,460 Skipping link: No binaries permitted for regvelo: https://archive1.piwheels.org/simple/regvelo/regvelo-0.3.0-py3-none-any.whl#sha256=ad1b1c3b6893e674a33ea20d90e86eaa81a443d18338b4baf96142bb4c6cd5d0 (from https://www.piwheels.org/simple/regvelo/) (requires-python:>=3.10) 2026-01-12T22:19:53,461 Skipping link: not a file: https://www.piwheels.org/simple/regvelo/ 2026-01-12T22:19:53,461 Skipping link: not a file: https://pypi.org/simple/regvelo/ 2026-01-12T22:19:53,480 Given no hashes to check 1 links for project 'regvelo': discarding no candidates 2026-01-12T22:19:53,498 Collecting regvelo==0.4.2 2026-01-12T22:19:53,501 Created temporary directory: /tmp/pip-unpack-t9mutnto 2026-01-12T22:19:53,720 Downloading regvelo-0.4.2.tar.gz (8.8 MB) 2026-01-12T22:19:55,691 Added regvelo==0.4.2 from https://files.pythonhosted.org/packages/37/9d/b670673a83c4b7b344da1c2a57abb194f5b1f99495a996338bb31a8e1c8a/regvelo-0.4.2.tar.gz to build tracker '/tmp/pip-build-tracker-hwqtiqqn' 2026-01-12T22:19:55,699 Created temporary directory: /tmp/pip-build-env-fnm2ur2q 2026-01-12T22:19:55,704 Installing build dependencies: started 2026-01-12T22:19:55,705 Running command pip subprocess to install build dependencies 2026-01-12T22:19:56,870 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-01-12T22:19:57,525 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-01-12T22:19:57,548 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-01-12T22:19:59,302 Collecting setuptools>=61 2026-01-12T22:19:59,390 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2026-01-12T22:19:59,772 Collecting setuptools-scm[toml]>=6.2 2026-01-12T22:19:59,789 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-9.2.2-py3-none-any.whl (62 kB) 2026-01-12T22:19:59,986 Collecting packaging>=20 2026-01-12T22:20:00,003 Using cached https://www.piwheels.org/simple/packaging/packaging-25.0-py3-none-any.whl (66 kB) 2026-01-12T22:20:03,058 Installing collected packages: setuptools, packaging, setuptools-scm 2026-01-12T22:20:07,148 Creating /tmp/pip-build-env-fnm2ur2q/overlay/local/bin 2026-01-12T22:20:07,150 changing mode of /tmp/pip-build-env-fnm2ur2q/overlay/local/bin/setuptools-scm to 755 2026-01-12T22:20:07,175 Successfully installed packaging-25.0 setuptools-80.9.0 setuptools-scm-9.2.2 2026-01-12T22:20:07,477 Installing build dependencies: finished with status 'done' 2026-01-12T22:20:07,484 Getting requirements to build wheel: started 2026-01-12T22:20:07,485 Running command Getting requirements to build wheel 2026-01-12T22:20:08,200 /tmp/pip-build-env-fnm2ur2q/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-01-12T22:20:08,200 !! 2026-01-12T22:20:08,202 ******************************************************************************** 2026-01-12T22:20:08,202 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-01-12T22:20:08,204 By 2026-Feb-18, you need to update your project and remove deprecated calls 2026-01-12T22:20:08,204 or your builds will no longer be supported. 2026-01-12T22:20:08,206 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-01-12T22:20:08,206 ******************************************************************************** 2026-01-12T22:20:08,208 !! 2026-01-12T22:20:08,209 corresp(dist, value, root_dir) 2026-01-12T22:20:08,307 /tmp/pip-build-env-fnm2ur2q/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-01-12T22:20:08,308 !! 2026-01-12T22:20:08,309 ******************************************************************************** 2026-01-12T22:20:08,309 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-01-12T22:20:08,311 License :: OSI Approved :: BSD License 2026-01-12T22:20:08,312 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-01-12T22:20:08,312 ******************************************************************************** 2026-01-12T22:20:08,313 !! 2026-01-12T22:20:08,314 dist._finalize_license_expression() 2026-01-12T22:20:08,320 /tmp/pip-build-env-fnm2ur2q/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-01-12T22:20:08,321 !! 2026-01-12T22:20:08,322 ******************************************************************************** 2026-01-12T22:20:08,322 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-01-12T22:20:08,323 License :: OSI Approved :: BSD License 2026-01-12T22:20:08,324 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-01-12T22:20:08,325 ******************************************************************************** 2026-01-12T22:20:08,325 !! 2026-01-12T22:20:08,326 self._finalize_license_expression() 2026-01-12T22:20:08,330 running egg_info 2026-01-12T22:20:08,338 writing src/regvelo.egg-info/PKG-INFO 2026-01-12T22:20:08,351 writing dependency_links to src/regvelo.egg-info/dependency_links.txt 2026-01-12T22:20:08,358 writing requirements to src/regvelo.egg-info/requires.txt 2026-01-12T22:20:08,360 writing top-level names to src/regvelo.egg-info/top_level.txt 2026-01-12T22:20:08,415 listing git files failed - pretending there aren't any 2026-01-12T22:20:08,420 reading manifest file 'src/regvelo.egg-info/SOURCES.txt' 2026-01-12T22:20:08,432 adding license file 'LICENSE' 2026-01-12T22:20:08,438 writing manifest file 'src/regvelo.egg-info/SOURCES.txt' 2026-01-12T22:20:08,541 Getting requirements to build wheel: finished with status 'done' 2026-01-12T22:20:08,544 Created temporary directory: /tmp/pip-modern-metadata-vq5e2cz_ 2026-01-12T22:20:08,547 Preparing metadata (pyproject.toml): started 2026-01-12T22:20:08,548 Running command Preparing metadata (pyproject.toml) 2026-01-12T22:20:09,192 /tmp/pip-build-env-fnm2ur2q/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-01-12T22:20:09,192 !! 2026-01-12T22:20:09,193 ******************************************************************************** 2026-01-12T22:20:09,194 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-01-12T22:20:09,195 By 2026-Feb-18, you need to update your project and remove deprecated calls 2026-01-12T22:20:09,196 or your builds will no longer be supported. 2026-01-12T22:20:09,197 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-01-12T22:20:09,197 ******************************************************************************** 2026-01-12T22:20:09,199 !! 2026-01-12T22:20:09,200 corresp(dist, value, root_dir) 2026-01-12T22:20:09,286 /tmp/pip-build-env-fnm2ur2q/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-01-12T22:20:09,287 !! 2026-01-12T22:20:09,288 ******************************************************************************** 2026-01-12T22:20:09,289 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-01-12T22:20:09,290 License :: OSI Approved :: BSD License 2026-01-12T22:20:09,291 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-01-12T22:20:09,291 ******************************************************************************** 2026-01-12T22:20:09,292 !! 2026-01-12T22:20:09,293 dist._finalize_license_expression() 2026-01-12T22:20:09,300 /tmp/pip-build-env-fnm2ur2q/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-01-12T22:20:09,301 !! 2026-01-12T22:20:09,302 ******************************************************************************** 2026-01-12T22:20:09,303 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-01-12T22:20:09,304 License :: OSI Approved :: BSD License 2026-01-12T22:20:09,305 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-01-12T22:20:09,305 ******************************************************************************** 2026-01-12T22:20:09,306 !! 2026-01-12T22:20:09,307 self._finalize_license_expression() 2026-01-12T22:20:09,309 running dist_info 2026-01-12T22:20:09,324 creating /tmp/pip-modern-metadata-vq5e2cz_/regvelo.egg-info 2026-01-12T22:20:09,325 writing /tmp/pip-modern-metadata-vq5e2cz_/regvelo.egg-info/PKG-INFO 2026-01-12T22:20:09,337 writing dependency_links to /tmp/pip-modern-metadata-vq5e2cz_/regvelo.egg-info/dependency_links.txt 2026-01-12T22:20:09,345 writing requirements to /tmp/pip-modern-metadata-vq5e2cz_/regvelo.egg-info/requires.txt 2026-01-12T22:20:09,346 writing top-level names to /tmp/pip-modern-metadata-vq5e2cz_/regvelo.egg-info/top_level.txt 2026-01-12T22:20:09,348 writing manifest file '/tmp/pip-modern-metadata-vq5e2cz_/regvelo.egg-info/SOURCES.txt' 2026-01-12T22:20:09,399 listing git files failed - pretending there aren't any 2026-01-12T22:20:09,404 reading manifest file '/tmp/pip-modern-metadata-vq5e2cz_/regvelo.egg-info/SOURCES.txt' 2026-01-12T22:20:09,406 adding license file 'LICENSE' 2026-01-12T22:20:09,410 writing manifest file '/tmp/pip-modern-metadata-vq5e2cz_/regvelo.egg-info/SOURCES.txt' 2026-01-12T22:20:09,411 creating '/tmp/pip-modern-metadata-vq5e2cz_/regvelo-0.4.2.dist-info' 2026-01-12T22:20:09,543 Preparing metadata (pyproject.toml): finished with status 'done' 2026-01-12T22:20:09,548 Source in /tmp/pip-wheel-ka6ye1ap/regvelo_447b5e3828a441cfa0a642a6eb079677 has version 0.4.2, which satisfies requirement regvelo==0.4.2 from https://files.pythonhosted.org/packages/37/9d/b670673a83c4b7b344da1c2a57abb194f5b1f99495a996338bb31a8e1c8a/regvelo-0.4.2.tar.gz 2026-01-12T22:20:09,549 Removed regvelo==0.4.2 from https://files.pythonhosted.org/packages/37/9d/b670673a83c4b7b344da1c2a57abb194f5b1f99495a996338bb31a8e1c8a/regvelo-0.4.2.tar.gz from build tracker '/tmp/pip-build-tracker-hwqtiqqn' 2026-01-12T22:20:09,555 Created temporary directory: /tmp/pip-unpack-fw5_6viw 2026-01-12T22:20:09,556 Building wheels for collected packages: regvelo 2026-01-12T22:20:09,561 Created temporary directory: /tmp/pip-wheel-hx734l_d 2026-01-12T22:20:09,561 Destination directory: /tmp/pip-wheel-hx734l_d 2026-01-12T22:20:09,564 Building wheel for regvelo (pyproject.toml): started 2026-01-12T22:20:09,565 Running command Building wheel for regvelo (pyproject.toml) 2026-01-12T22:20:10,208 /tmp/pip-build-env-fnm2ur2q/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-01-12T22:20:10,208 !! 2026-01-12T22:20:10,209 ******************************************************************************** 2026-01-12T22:20:10,210 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-01-12T22:20:10,211 By 2026-Feb-18, you need to update your project and remove deprecated calls 2026-01-12T22:20:10,212 or your builds will no longer be supported. 2026-01-12T22:20:10,213 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-01-12T22:20:10,213 ******************************************************************************** 2026-01-12T22:20:10,215 !! 2026-01-12T22:20:10,215 corresp(dist, value, root_dir) 2026-01-12T22:20:10,293 /tmp/pip-build-env-fnm2ur2q/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-01-12T22:20:10,293 !! 2026-01-12T22:20:10,295 ******************************************************************************** 2026-01-12T22:20:10,295 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-01-12T22:20:10,296 License :: OSI Approved :: BSD License 2026-01-12T22:20:10,297 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-01-12T22:20:10,297 ******************************************************************************** 2026-01-12T22:20:10,298 !! 2026-01-12T22:20:10,299 dist._finalize_license_expression() 2026-01-12T22:20:10,307 /tmp/pip-build-env-fnm2ur2q/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-01-12T22:20:10,307 !! 2026-01-12T22:20:10,308 ******************************************************************************** 2026-01-12T22:20:10,309 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-01-12T22:20:10,310 License :: OSI Approved :: BSD License 2026-01-12T22:20:10,311 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-01-12T22:20:10,311 ******************************************************************************** 2026-01-12T22:20:10,312 !! 2026-01-12T22:20:10,313 self._finalize_license_expression() 2026-01-12T22:20:10,313 running bdist_wheel 2026-01-12T22:20:10,335 running build 2026-01-12T22:20:10,336 running build_py 2026-01-12T22:20:10,344 creating build/lib/regvelo 2026-01-12T22:20:10,346 copying src/regvelo/__init__.py -> build/lib/regvelo 2026-01-12T22:20:10,349 copying src/regvelo/ModelComparison.py -> build/lib/regvelo 2026-01-12T22:20:10,351 copying src/regvelo/_model.py -> build/lib/regvelo 2026-01-12T22:20:10,355 copying src/regvelo/_constants.py -> build/lib/regvelo 2026-01-12T22:20:10,357 copying src/regvelo/_module.py -> build/lib/regvelo 2026-01-12T22:20:10,361 creating build/lib/regvelo/preprocessing 2026-01-12T22:20:10,362 copying src/regvelo/preprocessing/_preprocess_data.py -> build/lib/regvelo/preprocessing 2026-01-12T22:20:10,364 copying src/regvelo/preprocessing/__init__.py -> build/lib/regvelo/preprocessing 2026-01-12T22:20:10,366 copying src/regvelo/preprocessing/_sanity_check.py -> build/lib/regvelo/preprocessing 2026-01-12T22:20:10,368 copying src/regvelo/preprocessing/_filter_genes.py -> build/lib/regvelo/preprocessing 2026-01-12T22:20:10,371 copying src/regvelo/preprocessing/_set_prior_grn.py -> build/lib/regvelo/preprocessing 2026-01-12T22:20:10,373 creating build/lib/regvelo/plotting 2026-01-12T22:20:10,375 copying src/regvelo/plotting/_regulatory_network.py -> build/lib/regvelo/plotting 2026-01-12T22:20:10,377 copying src/regvelo/plotting/__init__.py -> build/lib/regvelo/plotting 2026-01-12T22:20:10,379 copying src/regvelo/plotting/_cellfate_perturbation.py -> build/lib/regvelo/plotting 2026-01-12T22:20:10,381 copying src/regvelo/plotting/_depletion_score.py -> build/lib/regvelo/plotting 2026-01-12T22:20:10,383 copying src/regvelo/plotting/_commitment_score.py -> build/lib/regvelo/plotting 2026-01-12T22:20:10,385 copying src/regvelo/plotting/_simulated_visit_diff.py -> build/lib/regvelo/plotting 2026-01-12T22:20:10,388 copying src/regvelo/plotting/_utils.py -> build/lib/regvelo/plotting 2026-01-12T22:20:10,390 creating build/lib/regvelo/datasets 2026-01-12T22:20:10,391 copying src/regvelo/datasets/__init__.py -> build/lib/regvelo/datasets 2026-01-12T22:20:10,394 copying src/regvelo/datasets/_datasets.py -> build/lib/regvelo/datasets 2026-01-12T22:20:10,396 creating build/lib/regvelo/metrics 2026-01-12T22:20:10,398 copying src/regvelo/metrics/_abundance_test.py -> build/lib/regvelo/metrics 2026-01-12T22:20:10,400 copying src/regvelo/metrics/__init__.py -> build/lib/regvelo/metrics 2026-01-12T22:20:10,402 copying src/regvelo/metrics/_cellfate_perturbation.py -> build/lib/regvelo/metrics 2026-01-12T22:20:10,404 copying src/regvelo/metrics/_depletion_score.py -> build/lib/regvelo/metrics 2026-01-12T22:20:10,407 copying src/regvelo/metrics/_tsi.py -> build/lib/regvelo/metrics 2026-01-12T22:20:10,409 copying src/regvelo/metrics/_utils.py -> build/lib/regvelo/metrics 2026-01-12T22:20:10,412 creating build/lib/regvelo/tools 2026-01-12T22:20:10,413 copying src/regvelo/tools/_perturbation_effect.py -> build/lib/regvelo/tools 2026-01-12T22:20:10,415 copying src/regvelo/tools/__init__.py -> build/lib/regvelo/tools 2026-01-12T22:20:10,417 copying src/regvelo/tools/_in_silico_block_simulation.py -> build/lib/regvelo/tools 2026-01-12T22:20:10,419 copying src/regvelo/tools/_set_output.py -> build/lib/regvelo/tools 2026-01-12T22:20:10,421 copying src/regvelo/tools/_markov_density_simulation.py -> build/lib/regvelo/tools 2026-01-12T22:20:10,423 copying src/regvelo/tools/_inferred_grn.py -> build/lib/regvelo/tools 2026-01-12T22:20:10,425 copying src/regvelo/tools/_TFScanning_func.py -> build/lib/regvelo/tools 2026-01-12T22:20:10,428 copying src/regvelo/tools/_TFscreening.py -> build/lib/regvelo/tools 2026-01-12T22:20:10,430 copying src/regvelo/tools/_regulation_scanning.py -> build/lib/regvelo/tools 2026-01-12T22:20:10,432 copying src/regvelo/tools/_in_silico_block_regulation_simulation.py -> build/lib/regvelo/tools 2026-01-12T22:20:10,434 copying src/regvelo/tools/_simulated_visit_diff.py -> build/lib/regvelo/tools 2026-01-12T22:20:10,436 copying src/regvelo/tools/_utils.py -> build/lib/regvelo/tools 2026-01-12T22:20:10,438 running egg_info 2026-01-12T22:20:10,452 writing src/regvelo.egg-info/PKG-INFO 2026-01-12T22:20:10,464 writing dependency_links to src/regvelo.egg-info/dependency_links.txt 2026-01-12T22:20:10,471 writing requirements to src/regvelo.egg-info/requires.txt 2026-01-12T22:20:10,472 writing top-level names to src/regvelo.egg-info/top_level.txt 2026-01-12T22:20:10,510 listing git files failed - pretending there aren't any 2026-01-12T22:20:10,514 reading manifest file 'src/regvelo.egg-info/SOURCES.txt' 2026-01-12T22:20:10,521 adding license file 'LICENSE' 2026-01-12T22:20:10,526 writing manifest file 'src/regvelo.egg-info/SOURCES.txt' 2026-01-12T22:20:10,548 installing to build/bdist.linux-armv7l/wheel 2026-01-12T22:20:10,549 running install 2026-01-12T22:20:10,572 running install_lib 2026-01-12T22:20:10,580 creating build/bdist.linux-armv7l/wheel 2026-01-12T22:20:10,582 creating build/bdist.linux-armv7l/wheel/regvelo 2026-01-12T22:20:10,584 creating build/bdist.linux-armv7l/wheel/regvelo/preprocessing 2026-01-12T22:20:10,585 copying build/lib/regvelo/preprocessing/_preprocess_data.py -> build/bdist.linux-armv7l/wheel/./regvelo/preprocessing 2026-01-12T22:20:10,587 copying build/lib/regvelo/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./regvelo/preprocessing 2026-01-12T22:20:10,589 copying build/lib/regvelo/preprocessing/_sanity_check.py -> build/bdist.linux-armv7l/wheel/./regvelo/preprocessing 2026-01-12T22:20:10,591 copying build/lib/regvelo/preprocessing/_filter_genes.py -> build/bdist.linux-armv7l/wheel/./regvelo/preprocessing 2026-01-12T22:20:10,592 copying build/lib/regvelo/preprocessing/_set_prior_grn.py -> build/bdist.linux-armv7l/wheel/./regvelo/preprocessing 2026-01-12T22:20:10,595 creating build/bdist.linux-armv7l/wheel/regvelo/plotting 2026-01-12T22:20:10,596 copying build/lib/regvelo/plotting/_regulatory_network.py -> build/bdist.linux-armv7l/wheel/./regvelo/plotting 2026-01-12T22:20:10,598 copying build/lib/regvelo/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./regvelo/plotting 2026-01-12T22:20:10,600 copying build/lib/regvelo/plotting/_cellfate_perturbation.py -> build/bdist.linux-armv7l/wheel/./regvelo/plotting 2026-01-12T22:20:10,602 copying build/lib/regvelo/plotting/_depletion_score.py -> build/bdist.linux-armv7l/wheel/./regvelo/plotting 2026-01-12T22:20:10,604 copying build/lib/regvelo/plotting/_commitment_score.py -> build/bdist.linux-armv7l/wheel/./regvelo/plotting 2026-01-12T22:20:10,606 copying build/lib/regvelo/plotting/_simulated_visit_diff.py -> build/bdist.linux-armv7l/wheel/./regvelo/plotting 2026-01-12T22:20:10,608 copying build/lib/regvelo/plotting/_utils.py -> build/bdist.linux-armv7l/wheel/./regvelo/plotting 2026-01-12T22:20:10,610 copying build/lib/regvelo/__init__.py -> build/bdist.linux-armv7l/wheel/./regvelo 2026-01-12T22:20:10,611 copying build/lib/regvelo/ModelComparison.py -> build/bdist.linux-armv7l/wheel/./regvelo 2026-01-12T22:20:10,615 creating build/bdist.linux-armv7l/wheel/regvelo/datasets 2026-01-12T22:20:10,616 copying build/lib/regvelo/datasets/__init__.py -> build/bdist.linux-armv7l/wheel/./regvelo/datasets 2026-01-12T22:20:10,618 copying build/lib/regvelo/datasets/_datasets.py -> build/bdist.linux-armv7l/wheel/./regvelo/datasets 2026-01-12T22:20:10,620 copying build/lib/regvelo/_model.py -> build/bdist.linux-armv7l/wheel/./regvelo 2026-01-12T22:20:10,623 creating build/bdist.linux-armv7l/wheel/regvelo/metrics 2026-01-12T22:20:10,624 copying build/lib/regvelo/metrics/_abundance_test.py -> build/bdist.linux-armv7l/wheel/./regvelo/metrics 2026-01-12T22:20:10,626 copying build/lib/regvelo/metrics/__init__.py -> build/bdist.linux-armv7l/wheel/./regvelo/metrics 2026-01-12T22:20:10,628 copying build/lib/regvelo/metrics/_cellfate_perturbation.py -> build/bdist.linux-armv7l/wheel/./regvelo/metrics 2026-01-12T22:20:10,630 copying build/lib/regvelo/metrics/_depletion_score.py -> build/bdist.linux-armv7l/wheel/./regvelo/metrics 2026-01-12T22:20:10,632 copying build/lib/regvelo/metrics/_tsi.py -> build/bdist.linux-armv7l/wheel/./regvelo/metrics 2026-01-12T22:20:10,635 copying build/lib/regvelo/metrics/_utils.py -> build/bdist.linux-armv7l/wheel/./regvelo/metrics 2026-01-12T22:20:10,637 creating build/bdist.linux-armv7l/wheel/regvelo/tools 2026-01-12T22:20:10,638 copying build/lib/regvelo/tools/_perturbation_effect.py -> build/bdist.linux-armv7l/wheel/./regvelo/tools 2026-01-12T22:20:10,640 copying build/lib/regvelo/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./regvelo/tools 2026-01-12T22:20:10,642 copying build/lib/regvelo/tools/_in_silico_block_simulation.py -> build/bdist.linux-armv7l/wheel/./regvelo/tools 2026-01-12T22:20:10,644 copying build/lib/regvelo/tools/_set_output.py -> build/bdist.linux-armv7l/wheel/./regvelo/tools 2026-01-12T22:20:10,645 copying build/lib/regvelo/tools/_markov_density_simulation.py -> build/bdist.linux-armv7l/wheel/./regvelo/tools 2026-01-12T22:20:10,647 copying build/lib/regvelo/tools/_inferred_grn.py -> build/bdist.linux-armv7l/wheel/./regvelo/tools 2026-01-12T22:20:10,649 copying build/lib/regvelo/tools/_TFScanning_func.py -> build/bdist.linux-armv7l/wheel/./regvelo/tools 2026-01-12T22:20:10,652 copying build/lib/regvelo/tools/_TFscreening.py -> build/bdist.linux-armv7l/wheel/./regvelo/tools 2026-01-12T22:20:10,654 copying build/lib/regvelo/tools/_regulation_scanning.py -> build/bdist.linux-armv7l/wheel/./regvelo/tools 2026-01-12T22:20:10,656 copying build/lib/regvelo/tools/_in_silico_block_regulation_simulation.py -> build/bdist.linux-armv7l/wheel/./regvelo/tools 2026-01-12T22:20:10,657 copying build/lib/regvelo/tools/_simulated_visit_diff.py -> build/bdist.linux-armv7l/wheel/./regvelo/tools 2026-01-12T22:20:10,659 copying build/lib/regvelo/tools/_utils.py -> build/bdist.linux-armv7l/wheel/./regvelo/tools 2026-01-12T22:20:10,661 copying build/lib/regvelo/_constants.py -> build/bdist.linux-armv7l/wheel/./regvelo 2026-01-12T22:20:10,663 copying build/lib/regvelo/_module.py -> build/bdist.linux-armv7l/wheel/./regvelo 2026-01-12T22:20:10,666 running install_egg_info 2026-01-12T22:20:10,672 Copying src/regvelo.egg-info to build/bdist.linux-armv7l/wheel/./regvelo-0.4.2-py3.11.egg-info 2026-01-12T22:20:10,683 running install_scripts 2026-01-12T22:20:10,692 creating build/bdist.linux-armv7l/wheel/regvelo-0.4.2.dist-info/WHEEL 2026-01-12T22:20:10,695 creating '/tmp/pip-wheel-hx734l_d/.tmp-18c027xj/regvelo-0.4.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-01-12T22:20:10,700 adding 'regvelo/ModelComparison.py' 2026-01-12T22:20:10,702 adding 'regvelo/__init__.py' 2026-01-12T22:20:10,703 adding 'regvelo/_constants.py' 2026-01-12T22:20:10,707 adding 'regvelo/_model.py' 2026-01-12T22:20:10,712 adding 'regvelo/_module.py' 2026-01-12T22:20:10,714 adding 'regvelo/datasets/__init__.py' 2026-01-12T22:20:10,716 adding 'regvelo/datasets/_datasets.py' 2026-01-12T22:20:10,717 adding 'regvelo/metrics/__init__.py' 2026-01-12T22:20:10,719 adding 'regvelo/metrics/_abundance_test.py' 2026-01-12T22:20:10,720 adding 'regvelo/metrics/_cellfate_perturbation.py' 2026-01-12T22:20:10,721 adding 'regvelo/metrics/_depletion_score.py' 2026-01-12T22:20:10,723 adding 'regvelo/metrics/_tsi.py' 2026-01-12T22:20:10,724 adding 'regvelo/metrics/_utils.py' 2026-01-12T22:20:10,726 adding 'regvelo/plotting/__init__.py' 2026-01-12T22:20:10,727 adding 'regvelo/plotting/_cellfate_perturbation.py' 2026-01-12T22:20:10,728 adding 'regvelo/plotting/_commitment_score.py' 2026-01-12T22:20:10,729 adding 'regvelo/plotting/_depletion_score.py' 2026-01-12T22:20:10,731 adding 'regvelo/plotting/_regulatory_network.py' 2026-01-12T22:20:10,732 adding 'regvelo/plotting/_simulated_visit_diff.py' 2026-01-12T22:20:10,733 adding 'regvelo/plotting/_utils.py' 2026-01-12T22:20:10,735 adding 'regvelo/preprocessing/__init__.py' 2026-01-12T22:20:10,736 adding 'regvelo/preprocessing/_filter_genes.py' 2026-01-12T22:20:10,737 adding 'regvelo/preprocessing/_preprocess_data.py' 2026-01-12T22:20:10,739 adding 'regvelo/preprocessing/_sanity_check.py' 2026-01-12T22:20:10,740 adding 'regvelo/preprocessing/_set_prior_grn.py' 2026-01-12T22:20:10,743 adding 'regvelo/tools/_TFScanning_func.py' 2026-01-12T22:20:10,744 adding 'regvelo/tools/_TFscreening.py' 2026-01-12T22:20:10,745 adding 'regvelo/tools/__init__.py' 2026-01-12T22:20:10,746 adding 'regvelo/tools/_in_silico_block_regulation_simulation.py' 2026-01-12T22:20:10,748 adding 'regvelo/tools/_in_silico_block_simulation.py' 2026-01-12T22:20:10,749 adding 'regvelo/tools/_inferred_grn.py' 2026-01-12T22:20:10,750 adding 'regvelo/tools/_markov_density_simulation.py' 2026-01-12T22:20:10,752 adding 'regvelo/tools/_perturbation_effect.py' 2026-01-12T22:20:10,753 adding 'regvelo/tools/_regulation_scanning.py' 2026-01-12T22:20:10,754 adding 'regvelo/tools/_set_output.py' 2026-01-12T22:20:10,756 adding 'regvelo/tools/_simulated_visit_diff.py' 2026-01-12T22:20:10,757 adding 'regvelo/tools/_utils.py' 2026-01-12T22:20:10,760 adding 'regvelo-0.4.2.dist-info/licenses/LICENSE' 2026-01-12T22:20:10,761 adding 'regvelo-0.4.2.dist-info/METADATA' 2026-01-12T22:20:10,762 adding 'regvelo-0.4.2.dist-info/WHEEL' 2026-01-12T22:20:10,763 adding 'regvelo-0.4.2.dist-info/top_level.txt' 2026-01-12T22:20:10,764 adding 'regvelo-0.4.2.dist-info/RECORD' 2026-01-12T22:20:10,766 removing build/bdist.linux-armv7l/wheel 2026-01-12T22:20:10,882 Building wheel for regvelo (pyproject.toml): finished with status 'done' 2026-01-12T22:20:10,888 Created wheel for regvelo: filename=regvelo-0.4.2-py3-none-any.whl size=64847 sha256=6a85878f98fd03567ce29a0e6ed057bbe8934c1533d359eab775fd636898c421 2026-01-12T22:20:10,889 Stored in directory: /tmp/pip-ephem-wheel-cache-j2j2vke4/wheels/85/ee/5b/b49fc134f47e6e3f2317297f68dba117736d47cfadb533b047 2026-01-12T22:20:10,902 Successfully built regvelo 2026-01-12T22:20:10,907 Removed build tracker: '/tmp/pip-build-tracker-hwqtiqqn'