2026-01-13T14:08:17,094 Created temporary directory: /tmp/pip-ephem-wheel-cache-oqhnqw96
2026-01-13T14:08:17,096 Created temporary directory: /tmp/pip-build-tracker-0xu3gqv0
2026-01-13T14:08:17,097 Initialized build tracking at /tmp/pip-build-tracker-0xu3gqv0
2026-01-13T14:08:17,097 Created build tracker: /tmp/pip-build-tracker-0xu3gqv0
2026-01-13T14:08:17,098 Entered build tracker: /tmp/pip-build-tracker-0xu3gqv0
2026-01-13T14:08:17,099 Created temporary directory: /tmp/pip-wheel-cr9b207k
2026-01-13T14:08:17,102 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-01-13T14:08:17,104 Created temporary directory: /tmp/pip-ephem-wheel-cache-myg4s55f
2026-01-13T14:08:17,126 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-01-13T14:08:17,130 2 location(s) to search for versions of biobuntu:
2026-01-13T14:08:17,130 * https://pypi.org/simple/biobuntu/
2026-01-13T14:08:17,130 * https://www.piwheels.org/simple/biobuntu/
2026-01-13T14:08:17,130 Fetching project page and analyzing links: https://pypi.org/simple/biobuntu/
2026-01-13T14:08:17,131 Getting page https://pypi.org/simple/biobuntu/
2026-01-13T14:08:17,133 Found index url https://pypi.org/simple
2026-01-13T14:08:17,278 Fetched page https://pypi.org/simple/biobuntu/ as application/vnd.pypi.simple.v1+json
2026-01-13T14:08:17,281   Skipping link: No binaries permitted for biobuntu: https://files.pythonhosted.org/packages/64/cf/4f21daa56026906df18253ea875635d40200b04c5398c2976cbe04bcf511/biobuntu-0.1.0-py3-none-any.whl (from https://pypi.org/simple/biobuntu/) (requires-python:>=3.8)
2026-01-13T14:08:17,283   Found link https://files.pythonhosted.org/packages/d9/11/4a6d8e68308234734e669afa1cd6b834cab4492099e5b846f9793c7360e2/biobuntu-0.1.0.tar.gz (from https://pypi.org/simple/biobuntu/) (requires-python:>=3.8), version: 0.1.0
2026-01-13T14:08:17,283   Skipping link: No binaries permitted for biobuntu: https://files.pythonhosted.org/packages/12/b6/c2041168299e2d3d34820729f2ed11126b6e622d4ffd706f61aea2bcbabf/biobuntu-1.0.0-py3-none-any.whl (from https://pypi.org/simple/biobuntu/) (requires-python:>=3.8)
2026-01-13T14:08:17,284   Found link https://files.pythonhosted.org/packages/46/17/5399b95835bd8fe691bc24d3b3d8d1f8ae0c02fe51c7d30699d796524bf8/biobuntu-1.0.0.tar.gz (from https://pypi.org/simple/biobuntu/) (requires-python:>=3.8), version: 1.0.0
2026-01-13T14:08:17,285   Skipping link: No binaries permitted for biobuntu: https://files.pythonhosted.org/packages/2c/d0/b96c035b568ccd5176db706d831560b6639908f1318f353018dab091536a/biobuntu-1.0.1-py3-none-any.whl (from https://pypi.org/simple/biobuntu/) (requires-python:>=3.8)
2026-01-13T14:08:17,286   Skipping link: No binaries permitted for biobuntu: https://files.pythonhosted.org/packages/81/d1/99ebf31d066030f39558944d6ded7c165c3c46d3213cd8d8b208e1378f09/biobuntu-1.2.2-py3-none-any.whl (from https://pypi.org/simple/biobuntu/) (requires-python:>=3.8)
2026-01-13T14:08:17,287   Found link https://files.pythonhosted.org/packages/d6/71/062ad0b600ff87b5c31fd7e43db67463076b99905ff071fa59c6115ce574/biobuntu-1.2.2.tar.gz (from https://pypi.org/simple/biobuntu/) (requires-python:>=3.8), version: 1.2.2
2026-01-13T14:08:17,287   Skipping link: No binaries permitted for biobuntu: https://files.pythonhosted.org/packages/51/f7/10bb316db5de1353d75d28038e692a960c6ff95e87661df7a3728c5a1496/biobuntu-1.2.3-py3-none-any.whl (from https://pypi.org/simple/biobuntu/) (requires-python:>=3.8)
2026-01-13T14:08:17,288   Found link https://files.pythonhosted.org/packages/d2/43/90a4b5ec47813dc535f09c0586691982bcb2a2e96e4018fc09b3878ffbe5/biobuntu-1.2.3.tar.gz (from https://pypi.org/simple/biobuntu/) (requires-python:>=3.8), version: 1.2.3
2026-01-13T14:08:17,289   Skipping link: No binaries permitted for biobuntu: https://files.pythonhosted.org/packages/aa/89/2c74282e9d56f1289dfdc8a8fade26d713cdda3efdcb761529586bec9672/biobuntu-1.2.4-py3-none-any.whl (from https://pypi.org/simple/biobuntu/) (requires-python:>=3.8)
2026-01-13T14:08:17,290   Found link https://files.pythonhosted.org/packages/45/f3/a98bf49b3b90e2473a4e5d017fca7c8cbb5417ca3297544caa5d7bcf6177/biobuntu-1.2.4.tar.gz (from https://pypi.org/simple/biobuntu/) (requires-python:>=3.8), version: 1.2.4
2026-01-13T14:08:17,291 Fetching project page and analyzing links: https://www.piwheels.org/simple/biobuntu/
2026-01-13T14:08:17,292 Getting page https://www.piwheels.org/simple/biobuntu/
2026-01-13T14:08:17,293 Found index url https://www.piwheels.org/simple
2026-01-13T14:08:17,951 Fetched page https://www.piwheels.org/simple/biobuntu/ as text/html
2026-01-13T14:08:17,954   Skipping link: No binaries permitted for biobuntu: https://www.piwheels.org/simple/biobuntu/biobuntu-1.2.3-py3-none-any.whl#sha256=a613000893558cbc51ee5c4d5967f2480c9694fed2ef209338db2fc3d06a81f0 (from https://www.piwheels.org/simple/biobuntu/) (requires-python:>=3.8)
2026-01-13T14:08:17,954   Skipping link: No binaries permitted for biobuntu: https://www.piwheels.org/simple/biobuntu/biobuntu-1.2.2-py3-none-any.whl#sha256=39f7c560c6eba4b3da330a633e7a2b4ad39d63b6dfc83e3f1e498c809443ea86 (from https://www.piwheels.org/simple/biobuntu/) (requires-python:>=3.8)
2026-01-13T14:08:17,955   Skipping link: No binaries permitted for biobuntu: https://www.piwheels.org/simple/biobuntu/biobuntu-1.0.0-py3-none-any.whl#sha256=0bae1f2ded17d096ad7b72099eab157e4606d8c6ecbc16b94bc8a81f30e238a0 (from https://www.piwheels.org/simple/biobuntu/) (requires-python:>=3.8)
2026-01-13T14:08:17,955   Skipping link: No binaries permitted for biobuntu: https://www.piwheels.org/simple/biobuntu/biobuntu-0.1.0-py3-none-any.whl#sha256=68acacdc74787c20d7391575f834eae66ab68870d9d36e16e9da855efa5f3fad (from https://www.piwheels.org/simple/biobuntu/) (requires-python:>=3.8)
2026-01-13T14:08:17,956 Skipping link: not a file: https://www.piwheels.org/simple/biobuntu/
2026-01-13T14:08:17,956 Skipping link: not a file: https://pypi.org/simple/biobuntu/
2026-01-13T14:08:17,984 Given no hashes to check 1 links for project 'biobuntu': discarding no candidates
2026-01-13T14:08:18,017 Collecting biobuntu==1.2.4
2026-01-13T14:08:18,020   Created temporary directory: /tmp/pip-unpack-lk__3p53
2026-01-13T14:08:18,259   Downloading biobuntu-1.2.4.tar.gz (60 kB)
2026-01-13T14:08:18,412   Added biobuntu==1.2.4 from https://files.pythonhosted.org/packages/45/f3/a98bf49b3b90e2473a4e5d017fca7c8cbb5417ca3297544caa5d7bcf6177/biobuntu-1.2.4.tar.gz to build tracker '/tmp/pip-build-tracker-0xu3gqv0'
2026-01-13T14:08:18,418   Created temporary directory: /tmp/pip-build-env-c313nvif
2026-01-13T14:08:18,422   Installing build dependencies: started
2026-01-13T14:08:18,424   Running command pip subprocess to install build dependencies
2026-01-13T14:08:19,587   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-01-13T14:08:20,242   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-01-13T14:08:20,265   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-01-13T14:08:21,964   Collecting setuptools
2026-01-13T14:08:22,078     Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB)
2026-01-13T14:08:22,349   Collecting wheel
2026-01-13T14:08:22,383     Using cached https://www.piwheels.org/simple/wheel/wheel-0.45.1-py3-none-any.whl (72 kB)
2026-01-13T14:08:25,422   Installing collected packages: wheel, setuptools
2026-01-13T14:08:25,679     Creating /tmp/pip-build-env-c313nvif/overlay/local/bin
2026-01-13T14:08:25,681     changing mode of /tmp/pip-build-env-c313nvif/overlay/local/bin/wheel to 755
2026-01-13T14:08:29,560   Successfully installed setuptools-80.9.0 wheel-0.45.1
2026-01-13T14:08:29,831   Installing build dependencies: finished with status 'done'
2026-01-13T14:08:29,838   Getting requirements to build wheel: started
2026-01-13T14:08:29,839   Running command Getting requirements to build wheel
2026-01-13T14:08:30,548   running egg_info
2026-01-13T14:08:30,555   writing biobuntu.egg-info/PKG-INFO
2026-01-13T14:08:30,559   writing dependency_links to biobuntu.egg-info/dependency_links.txt
2026-01-13T14:08:30,561   writing entry points to biobuntu.egg-info/entry_points.txt
2026-01-13T14:08:30,563   writing requirements to biobuntu.egg-info/requires.txt
2026-01-13T14:08:30,565   writing top-level names to biobuntu.egg-info/top_level.txt
2026-01-13T14:08:30,608   reading manifest file 'biobuntu.egg-info/SOURCES.txt'
2026-01-13T14:08:30,613   adding license file 'LICENSE'
2026-01-13T14:08:30,617   writing manifest file 'biobuntu.egg-info/SOURCES.txt'
2026-01-13T14:08:30,715   Getting requirements to build wheel: finished with status 'done'
2026-01-13T14:08:30,718   Created temporary directory: /tmp/pip-modern-metadata-zdbr6osg
2026-01-13T14:08:30,721   Preparing metadata (pyproject.toml): started
2026-01-13T14:08:30,722   Running command Preparing metadata (pyproject.toml)
2026-01-13T14:08:31,395   running dist_info
2026-01-13T14:08:31,408   creating /tmp/pip-modern-metadata-zdbr6osg/biobuntu.egg-info
2026-01-13T14:08:31,409   writing /tmp/pip-modern-metadata-zdbr6osg/biobuntu.egg-info/PKG-INFO
2026-01-13T14:08:31,412   writing dependency_links to /tmp/pip-modern-metadata-zdbr6osg/biobuntu.egg-info/dependency_links.txt
2026-01-13T14:08:31,414   writing entry points to /tmp/pip-modern-metadata-zdbr6osg/biobuntu.egg-info/entry_points.txt
2026-01-13T14:08:31,416   writing requirements to /tmp/pip-modern-metadata-zdbr6osg/biobuntu.egg-info/requires.txt
2026-01-13T14:08:31,417   writing top-level names to /tmp/pip-modern-metadata-zdbr6osg/biobuntu.egg-info/top_level.txt
2026-01-13T14:08:31,418   writing manifest file '/tmp/pip-modern-metadata-zdbr6osg/biobuntu.egg-info/SOURCES.txt'
2026-01-13T14:08:31,455   reading manifest file '/tmp/pip-modern-metadata-zdbr6osg/biobuntu.egg-info/SOURCES.txt'
2026-01-13T14:08:31,457   adding license file 'LICENSE'
2026-01-13T14:08:31,461   writing manifest file '/tmp/pip-modern-metadata-zdbr6osg/biobuntu.egg-info/SOURCES.txt'
2026-01-13T14:08:31,462   creating '/tmp/pip-modern-metadata-zdbr6osg/biobuntu-1.2.4.dist-info'
2026-01-13T14:08:31,592   Preparing metadata (pyproject.toml): finished with status 'done'
2026-01-13T14:08:31,598   Source in /tmp/pip-wheel-cr9b207k/biobuntu_30188e0ece9e4c5cb89050630a7f7e3e has version 1.2.4, which satisfies requirement biobuntu==1.2.4 from https://files.pythonhosted.org/packages/45/f3/a98bf49b3b90e2473a4e5d017fca7c8cbb5417ca3297544caa5d7bcf6177/biobuntu-1.2.4.tar.gz
2026-01-13T14:08:31,599   Removed biobuntu==1.2.4 from https://files.pythonhosted.org/packages/45/f3/a98bf49b3b90e2473a4e5d017fca7c8cbb5417ca3297544caa5d7bcf6177/biobuntu-1.2.4.tar.gz from build tracker '/tmp/pip-build-tracker-0xu3gqv0'
2026-01-13T14:08:31,605 Created temporary directory: /tmp/pip-unpack-3hklh_bm
2026-01-13T14:08:31,606 Building wheels for collected packages: biobuntu
2026-01-13T14:08:31,611   Created temporary directory: /tmp/pip-wheel-o81rgpkt
2026-01-13T14:08:31,612   Destination directory: /tmp/pip-wheel-o81rgpkt
2026-01-13T14:08:31,614   Building wheel for biobuntu (pyproject.toml): started
2026-01-13T14:08:31,615   Running command Building wheel for biobuntu (pyproject.toml)
2026-01-13T14:08:32,254   running bdist_wheel
2026-01-13T14:08:32,276   running build
2026-01-13T14:08:32,276   running build_py
2026-01-13T14:08:32,283   creating build/lib/configs
2026-01-13T14:08:32,286   copying configs/__init__.py -> build/lib/configs
2026-01-13T14:08:32,288   creating build/lib/gui
2026-01-13T14:08:32,290   copying gui/__init__.py -> build/lib/gui
2026-01-13T14:08:32,292   copying gui/main.py -> build/lib/gui
2026-01-13T14:08:32,294   creating build/lib/cli
2026-01-13T14:08:32,295   copying cli/__init__.py -> build/lib/cli
2026-01-13T14:08:32,297   copying cli/cli.py -> build/lib/cli
2026-01-13T14:08:32,300   creating build/lib/core
2026-01-13T14:08:32,301   copying core/__init__.py -> build/lib/core
2026-01-13T14:08:32,303   copying core/runner.py -> build/lib/core
2026-01-13T14:08:32,305   copying core/file_manager.py -> build/lib/core
2026-01-13T14:08:32,307   copying core/engine.py -> build/lib/core
2026-01-13T14:08:32,309   copying core/config.py -> build/lib/core
2026-01-13T14:08:32,311   copying core/utils.py -> build/lib/core
2026-01-13T14:08:32,313   copying core/logger.py -> build/lib/core
2026-01-13T14:08:32,315   copying core/project_manager.py -> build/lib/core
2026-01-13T14:08:32,318   creating build/lib/web
2026-01-13T14:08:32,319   copying web/__init__.py -> build/lib/web
2026-01-13T14:08:32,320   copying web/api.py -> build/lib/web
2026-01-13T14:08:32,323   creating build/lib/tools
2026-01-13T14:08:32,324   copying tools/samtools.py -> build/lib/tools
2026-01-13T14:08:32,326   copying tools/hisat2.py -> build/lib/tools
2026-01-13T14:08:32,328   copying tools/gatk.py -> build/lib/tools
2026-01-13T14:08:32,330   copying tools/fastqc.py -> build/lib/tools
2026-01-13T14:08:32,332   copying tools/bwa.py -> build/lib/tools
2026-01-13T14:08:32,334   creating build/lib/gui/widgets
2026-01-13T14:08:32,335   copying gui/widgets/file_drop.py -> build/lib/gui/widgets
2026-01-13T14:08:32,338   copying gui/widgets/progress_bar.py -> build/lib/gui/widgets
2026-01-13T14:08:32,340   creating build/lib/gui/windows
2026-01-13T14:08:32,341   copying gui/windows/main_window.py -> build/lib/gui/windows
2026-01-13T14:08:32,344   copying gui/windows/settings_window.py -> build/lib/gui/windows
2026-01-13T14:08:32,347   creating build/lib/web/routes
2026-01-13T14:08:32,349   copying web/routes/__init__.py -> build/lib/web/routes
2026-01-13T14:08:32,351   copying web/routes/pipelines.py -> build/lib/web/routes
2026-01-13T14:08:32,353   copying web/routes/status.py -> build/lib/web/routes
2026-01-13T14:08:32,355   copying web/routes/projects.py -> build/lib/web/routes
2026-01-13T14:08:32,358   running egg_info
2026-01-13T14:08:32,371   writing biobuntu.egg-info/PKG-INFO
2026-01-13T14:08:32,374   writing dependency_links to biobuntu.egg-info/dependency_links.txt
2026-01-13T14:08:32,376   writing entry points to biobuntu.egg-info/entry_points.txt
2026-01-13T14:08:32,377   writing requirements to biobuntu.egg-info/requires.txt
2026-01-13T14:08:32,378   writing top-level names to biobuntu.egg-info/top_level.txt
2026-01-13T14:08:32,404   reading manifest file 'biobuntu.egg-info/SOURCES.txt'
2026-01-13T14:08:32,409   adding license file 'LICENSE'
2026-01-13T14:08:32,413   writing manifest file 'biobuntu.egg-info/SOURCES.txt'
2026-01-13T14:08:32,426   copying configs/default.yaml -> build/lib/configs
2026-01-13T14:08:32,429   copying configs/threads.yaml -> build/lib/configs
2026-01-13T14:08:32,431   copying configs/tools.yaml -> build/lib/configs
2026-01-13T14:08:32,433   creating build/lib/web/templates
2026-01-13T14:08:32,435   copying web/templates/index.html -> build/lib/web/templates
2026-01-13T14:08:32,438   creating build/lib/web/static/css
2026-01-13T14:08:32,439   copying web/static/css/style.css -> build/lib/web/static/css
2026-01-13T14:08:32,442   creating build/lib/web/static/js
2026-01-13T14:08:32,443   copying web/static/js/app.js -> build/lib/web/static/js
2026-01-13T14:08:32,447   creating build/lib/web/static/images
2026-01-13T14:08:32,448   copying web/static/images/logo.svg -> build/lib/web/static/images
2026-01-13T14:08:32,450   copying web/static/images/spinner.svg -> build/lib/web/static/images
2026-01-13T14:08:32,453   copying web/static/images/favicon.svg -> build/lib/web/static/images
2026-01-13T14:08:32,475   installing to build/bdist.linux-armv7l/wheel
2026-01-13T14:08:32,476   running install
2026-01-13T14:08:32,498   running install_lib
2026-01-13T14:08:32,505   creating build/bdist.linux-armv7l/wheel
2026-01-13T14:08:32,508   creating build/bdist.linux-armv7l/wheel/configs
2026-01-13T14:08:32,509   copying build/lib/configs/default.yaml -> build/bdist.linux-armv7l/wheel/./configs
2026-01-13T14:08:32,511   copying build/lib/configs/__init__.py -> build/bdist.linux-armv7l/wheel/./configs
2026-01-13T14:08:32,512   copying build/lib/configs/threads.yaml -> build/bdist.linux-armv7l/wheel/./configs
2026-01-13T14:08:32,514   copying build/lib/configs/tools.yaml -> build/bdist.linux-armv7l/wheel/./configs
2026-01-13T14:08:32,517   creating build/bdist.linux-armv7l/wheel/gui
2026-01-13T14:08:32,518   copying build/lib/gui/__init__.py -> build/bdist.linux-armv7l/wheel/./gui
2026-01-13T14:08:32,520   creating build/bdist.linux-armv7l/wheel/gui/widgets
2026-01-13T14:08:32,521   copying build/lib/gui/widgets/file_drop.py -> build/bdist.linux-armv7l/wheel/./gui/widgets
2026-01-13T14:08:32,523   copying build/lib/gui/widgets/progress_bar.py -> build/bdist.linux-armv7l/wheel/./gui/widgets
2026-01-13T14:08:32,525   copying build/lib/gui/main.py -> build/bdist.linux-armv7l/wheel/./gui
2026-01-13T14:08:32,528   creating build/bdist.linux-armv7l/wheel/gui/windows
2026-01-13T14:08:32,529   copying build/lib/gui/windows/main_window.py -> build/bdist.linux-armv7l/wheel/./gui/windows
2026-01-13T14:08:32,531   copying build/lib/gui/windows/settings_window.py -> build/bdist.linux-armv7l/wheel/./gui/windows
2026-01-13T14:08:32,534   creating build/bdist.linux-armv7l/wheel/cli
2026-01-13T14:08:32,535   copying build/lib/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./cli
2026-01-13T14:08:32,537   copying build/lib/cli/cli.py -> build/bdist.linux-armv7l/wheel/./cli
2026-01-13T14:08:32,540   creating build/bdist.linux-armv7l/wheel/core
2026-01-13T14:08:32,541   copying build/lib/core/__init__.py -> build/bdist.linux-armv7l/wheel/./core
2026-01-13T14:08:32,543   copying build/lib/core/runner.py -> build/bdist.linux-armv7l/wheel/./core
2026-01-13T14:08:32,545   copying build/lib/core/file_manager.py -> build/bdist.linux-armv7l/wheel/./core
2026-01-13T14:08:32,547   copying build/lib/core/engine.py -> build/bdist.linux-armv7l/wheel/./core
2026-01-13T14:08:32,549   copying build/lib/core/config.py -> build/bdist.linux-armv7l/wheel/./core
2026-01-13T14:08:32,551   copying build/lib/core/utils.py -> build/bdist.linux-armv7l/wheel/./core
2026-01-13T14:08:32,553   copying build/lib/core/logger.py -> build/bdist.linux-armv7l/wheel/./core
2026-01-13T14:08:32,555   copying build/lib/core/project_manager.py -> build/bdist.linux-armv7l/wheel/./core
2026-01-13T14:08:32,558   creating build/bdist.linux-armv7l/wheel/web
2026-01-13T14:08:32,560   creating build/bdist.linux-armv7l/wheel/web/static
2026-01-13T14:08:32,561   creating build/bdist.linux-armv7l/wheel/web/static/css
2026-01-13T14:08:32,563   copying build/lib/web/static/css/style.css -> build/bdist.linux-armv7l/wheel/./web/static/css
2026-01-13T14:08:32,566   creating build/bdist.linux-armv7l/wheel/web/static/js
2026-01-13T14:08:32,567   copying build/lib/web/static/js/app.js -> build/bdist.linux-armv7l/wheel/./web/static/js
2026-01-13T14:08:32,571   creating build/bdist.linux-armv7l/wheel/web/static/images
2026-01-13T14:08:32,572   copying build/lib/web/static/images/logo.svg -> build/bdist.linux-armv7l/wheel/./web/static/images
2026-01-13T14:08:32,574   copying build/lib/web/static/images/spinner.svg -> build/bdist.linux-armv7l/wheel/./web/static/images
2026-01-13T14:08:32,576   copying build/lib/web/static/images/favicon.svg -> build/bdist.linux-armv7l/wheel/./web/static/images
2026-01-13T14:08:32,580   creating build/bdist.linux-armv7l/wheel/web/templates
2026-01-13T14:08:32,581   copying build/lib/web/templates/index.html -> build/bdist.linux-armv7l/wheel/./web/templates
2026-01-13T14:08:32,584   copying build/lib/web/__init__.py -> build/bdist.linux-armv7l/wheel/./web
2026-01-13T14:08:32,586   copying build/lib/web/api.py -> build/bdist.linux-armv7l/wheel/./web
2026-01-13T14:08:32,589   creating build/bdist.linux-armv7l/wheel/web/routes
2026-01-13T14:08:32,590   copying build/lib/web/routes/__init__.py -> build/bdist.linux-armv7l/wheel/./web/routes
2026-01-13T14:08:32,592   copying build/lib/web/routes/pipelines.py -> build/bdist.linux-armv7l/wheel/./web/routes
2026-01-13T14:08:32,594   copying build/lib/web/routes/status.py -> build/bdist.linux-armv7l/wheel/./web/routes
2026-01-13T14:08:32,596   copying build/lib/web/routes/projects.py -> build/bdist.linux-armv7l/wheel/./web/routes
2026-01-13T14:08:32,599   creating build/bdist.linux-armv7l/wheel/tools
2026-01-13T14:08:32,600   copying build/lib/tools/samtools.py -> build/bdist.linux-armv7l/wheel/./tools
2026-01-13T14:08:32,602   copying build/lib/tools/hisat2.py -> build/bdist.linux-armv7l/wheel/./tools
2026-01-13T14:08:32,604   copying build/lib/tools/gatk.py -> build/bdist.linux-armv7l/wheel/./tools
2026-01-13T14:08:32,605   copying build/lib/tools/fastqc.py -> build/bdist.linux-armv7l/wheel/./tools
2026-01-13T14:08:32,607   copying build/lib/tools/bwa.py -> build/bdist.linux-armv7l/wheel/./tools
2026-01-13T14:08:32,609   running install_egg_info
2026-01-13T14:08:32,615   Copying biobuntu.egg-info to build/bdist.linux-armv7l/wheel/./biobuntu-1.2.4-py3.11.egg-info
2026-01-13T14:08:32,628   running install_scripts
2026-01-13T14:08:32,642   creating build/bdist.linux-armv7l/wheel/biobuntu-1.2.4.dist-info/WHEEL
2026-01-13T14:08:32,645   creating '/tmp/pip-wheel-o81rgpkt/.tmp-w0rc0ts8/biobuntu-1.2.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-01-13T14:08:32,648   adding 'biobuntu-1.2.4.dist-info/licenses/LICENSE'
2026-01-13T14:08:32,650   adding 'cli/__init__.py'
2026-01-13T14:08:32,651   adding 'cli/cli.py'
2026-01-13T14:08:32,653   adding 'configs/__init__.py'
2026-01-13T14:08:32,654   adding 'configs/default.yaml'
2026-01-13T14:08:32,656   adding 'configs/threads.yaml'
2026-01-13T14:08:32,657   adding 'configs/tools.yaml'
2026-01-13T14:08:32,659   adding 'core/__init__.py'
2026-01-13T14:08:32,660   adding 'core/config.py'
2026-01-13T14:08:32,662   adding 'core/engine.py'
2026-01-13T14:08:32,663   adding 'core/file_manager.py'
2026-01-13T14:08:32,664   adding 'core/logger.py'
2026-01-13T14:08:32,666   adding 'core/project_manager.py'
2026-01-13T14:08:32,667   adding 'core/runner.py'
2026-01-13T14:08:32,668   adding 'core/utils.py'
2026-01-13T14:08:32,669   adding 'gui/__init__.py'
2026-01-13T14:08:32,671   adding 'gui/main.py'
2026-01-13T14:08:32,672   adding 'gui/widgets/file_drop.py'
2026-01-13T14:08:32,674   adding 'gui/widgets/progress_bar.py'
2026-01-13T14:08:32,676   adding 'gui/windows/main_window.py'
2026-01-13T14:08:32,677   adding 'gui/windows/settings_window.py'
2026-01-13T14:08:32,679   adding 'tools/bwa.py'
2026-01-13T14:08:32,680   adding 'tools/fastqc.py'
2026-01-13T14:08:32,682   adding 'tools/gatk.py'
2026-01-13T14:08:32,683   adding 'tools/hisat2.py'
2026-01-13T14:08:32,684   adding 'tools/samtools.py'
2026-01-13T14:08:32,686   adding 'web/__init__.py'
2026-01-13T14:08:32,687   adding 'web/api.py'
2026-01-13T14:08:32,689   adding 'web/routes/__init__.py'
2026-01-13T14:08:32,690   adding 'web/routes/pipelines.py'
2026-01-13T14:08:32,691   adding 'web/routes/projects.py'
2026-01-13T14:08:32,693   adding 'web/routes/status.py'
2026-01-13T14:08:32,695   adding 'web/static/css/style.css'
2026-01-13T14:08:32,716   adding 'web/static/images/favicon.svg'
2026-01-13T14:08:32,717   adding 'web/static/images/logo.svg'
2026-01-13T14:08:32,719   adding 'web/static/images/spinner.svg'
2026-01-13T14:08:32,721   adding 'web/static/js/app.js'
2026-01-13T14:08:32,724   adding 'web/templates/index.html'
2026-01-13T14:08:32,726   adding 'biobuntu-1.2.4.dist-info/METADATA'
2026-01-13T14:08:32,727   adding 'biobuntu-1.2.4.dist-info/WHEEL'
2026-01-13T14:08:32,728   adding 'biobuntu-1.2.4.dist-info/entry_points.txt'
2026-01-13T14:08:32,729   adding 'biobuntu-1.2.4.dist-info/top_level.txt'
2026-01-13T14:08:32,730   adding 'biobuntu-1.2.4.dist-info/RECORD'
2026-01-13T14:08:32,732   removing build/bdist.linux-armv7l/wheel
2026-01-13T14:08:32,847   Building wheel for biobuntu (pyproject.toml): finished with status 'done'
2026-01-13T14:08:32,853   Created wheel for biobuntu: filename=biobuntu-1.2.4-py3-none-any.whl size=66754 sha256=cf29a4917928fb8edfff65a6901d1d43b3d6f63eb8c1336b7d5b328051daf6d0
2026-01-13T14:08:32,855   Stored in directory: /tmp/pip-ephem-wheel-cache-myg4s55f/wheels/2c/eb/50/788f5163cbce5d9457d70fe498d027677c86a1567f3cab22bb
2026-01-13T14:08:32,868 Successfully built biobuntu
2026-01-13T14:08:32,872 Removed build tracker: '/tmp/pip-build-tracker-0xu3gqv0'