2026-01-13T23:01:02,269 Created temporary directory: /tmp/pip-ephem-wheel-cache-3fk72ixi
2026-01-13T23:01:02,271 Created temporary directory: /tmp/pip-build-tracker-hezcbyyp
2026-01-13T23:01:02,272 Initialized build tracking at /tmp/pip-build-tracker-hezcbyyp
2026-01-13T23:01:02,272 Created build tracker: /tmp/pip-build-tracker-hezcbyyp
2026-01-13T23:01:02,272 Entered build tracker: /tmp/pip-build-tracker-hezcbyyp
2026-01-13T23:01:02,273 Created temporary directory: /tmp/pip-wheel-escuryn2
2026-01-13T23:01:02,276 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-01-13T23:01:02,279 Created temporary directory: /tmp/pip-ephem-wheel-cache-ghcan3wq
2026-01-13T23:01:02,300 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-01-13T23:01:02,304 2 location(s) to search for versions of recon:
2026-01-13T23:01:02,304 * https://pypi.org/simple/recon/
2026-01-13T23:01:02,304 * https://www.piwheels.org/simple/recon/
2026-01-13T23:01:02,305 Fetching project page and analyzing links: https://pypi.org/simple/recon/
2026-01-13T23:01:02,305 Getting page https://pypi.org/simple/recon/
2026-01-13T23:01:02,307 Found index url https://pypi.org/simple
2026-01-13T23:01:02,522 Fetched page https://pypi.org/simple/recon/ as application/vnd.pypi.simple.v1+json
2026-01-13T23:01:02,523   Found link https://files.pythonhosted.org/packages/83/17/1499fbed0de1308e0fdd5ded8db9b55f792ffa5c11500f922ccf264d0b7c/recon-0.0.1.tar.gz (from https://pypi.org/simple/recon/), version: 0.0.1
2026-01-13T23:01:02,524   Skipping link: No binaries permitted for recon: https://files.pythonhosted.org/packages/89/39/cec21e6c0b9684106c59af306b99dd7d5ad9dadae717050ba3ef4549def4/recon-0.0.2-py3-none-any.whl (from https://pypi.org/simple/recon/) (requires-python:>=3.8)
2026-01-13T23:01:02,525   Found link https://files.pythonhosted.org/packages/e3/46/83d1941971ac9c171d01f6b950d8ed1d3aaa172cc6c430e26e3efaaab76d/recon-0.0.2.tar.gz (from https://pypi.org/simple/recon/) (requires-python:>=3.8), version: 0.0.2
2026-01-13T23:01:02,526 Fetching project page and analyzing links: https://www.piwheels.org/simple/recon/
2026-01-13T23:01:02,527 Getting page https://www.piwheels.org/simple/recon/
2026-01-13T23:01:02,528 Found index url https://www.piwheels.org/simple
2026-01-13T23:01:02,712 Fetched page https://www.piwheels.org/simple/recon/ as text/html
2026-01-13T23:01:02,713   Skipping link: No binaries permitted for recon: https://archive1.piwheels.org/simple/recon/recon-0.0.1-py3-none-any.whl#sha256=a8104f3d236a251345472bd3cc3fd5b286d9f59f2951fb3cb1a5b35dcf1faba2 (from https://www.piwheels.org/simple/recon/)
2026-01-13T23:01:02,714 Skipping link: not a file: https://www.piwheels.org/simple/recon/
2026-01-13T23:01:02,715 Skipping link: not a file: https://pypi.org/simple/recon/
2026-01-13T23:01:02,733 Given no hashes to check 1 links for project 'recon': discarding no candidates
2026-01-13T23:01:02,752 Collecting recon==0.0.2
2026-01-13T23:01:02,754   Created temporary directory: /tmp/pip-unpack-ygn_buaq
2026-01-13T23:01:02,972   Downloading recon-0.0.2.tar.gz (13.4 MB)
2026-01-13T23:01:06,136   Added recon==0.0.2 from https://files.pythonhosted.org/packages/e3/46/83d1941971ac9c171d01f6b950d8ed1d3aaa172cc6c430e26e3efaaab76d/recon-0.0.2.tar.gz to build tracker '/tmp/pip-build-tracker-hezcbyyp'
2026-01-13T23:01:06,144   Created temporary directory: /tmp/pip-build-env-04lm0rm5
2026-01-13T23:01:06,151   Installing build dependencies: started
2026-01-13T23:01:06,152   Running command pip subprocess to install build dependencies
2026-01-13T23:01:07,305   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-01-13T23:01:07,892   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-01-13T23:01:07,916   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-01-13T23:01:09,743   Collecting setuptools>=61.0
2026-01-13T23:01:09,857     Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB)
2026-01-13T23:01:10,130   Collecting wheel
2026-01-13T23:01:10,149     Using cached https://www.piwheels.org/simple/wheel/wheel-0.45.1-py3-none-any.whl (72 kB)
2026-01-13T23:01:11,138     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2026-01-13T23:01:11,145     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2026-01-13T23:01:11,152     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2026-01-13T23:01:11,159     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2026-01-13T23:01:11,166     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2026-01-13T23:01:11,831   Collecting numpy
2026-01-13T23:01:12,282     Using cached https://www.piwheels.org/simple/numpy/numpy-2.4.1-cp311-cp311-linux_armv7l.whl (6.3 MB)
2026-01-13T23:01:14,815   Collecting Cython
2026-01-13T23:01:15,713     Using cached https://www.piwheels.org/simple/cython/cython-3.2.4-cp311-cp311-linux_armv7l.whl (11.1 MB)
2026-01-13T23:01:19,080   Installing collected packages: wheel, setuptools, numpy, Cython
2026-01-13T23:01:19,333     Creating /tmp/pip-build-env-04lm0rm5/overlay/local/bin
2026-01-13T23:01:19,335     changing mode of /tmp/pip-build-env-04lm0rm5/overlay/local/bin/wheel to 755
2026-01-13T23:01:31,969     changing mode of /tmp/pip-build-env-04lm0rm5/overlay/local/bin/f2py to 755
2026-01-13T23:01:31,971     changing mode of /tmp/pip-build-env-04lm0rm5/overlay/local/bin/numpy-config to 755
2026-01-13T23:01:36,104     changing mode of /tmp/pip-build-env-04lm0rm5/overlay/local/bin/cygdb to 755
2026-01-13T23:01:36,106     changing mode of /tmp/pip-build-env-04lm0rm5/overlay/local/bin/cython to 755
2026-01-13T23:01:36,109     changing mode of /tmp/pip-build-env-04lm0rm5/overlay/local/bin/cythonize to 755
2026-01-13T23:01:36,146   Successfully installed Cython-3.2.4 numpy-2.4.1 setuptools-80.9.0 wheel-0.45.1
2026-01-13T23:01:36,611   Installing build dependencies: finished with status 'done'
2026-01-13T23:01:36,618   Getting requirements to build wheel: started
2026-01-13T23:01:36,619   Running command Getting requirements to build wheel
2026-01-13T23:01:37,536   running egg_info
2026-01-13T23:01:37,544   writing src/recon.egg-info/PKG-INFO
2026-01-13T23:01:37,550   writing dependency_links to src/recon.egg-info/dependency_links.txt
2026-01-13T23:01:37,554   writing requirements to src/recon.egg-info/requires.txt
2026-01-13T23:01:37,556   writing top-level names to src/recon.egg-info/top_level.txt
2026-01-13T23:01:37,595   reading manifest file 'src/recon.egg-info/SOURCES.txt'
2026-01-13T23:01:37,599   adding license file 'LICENSE'
2026-01-13T23:01:37,603   writing manifest file 'src/recon.egg-info/SOURCES.txt'
2026-01-13T23:01:37,715   Getting requirements to build wheel: finished with status 'done'
2026-01-13T23:01:37,718   Created temporary directory: /tmp/pip-modern-metadata-9hi9kcys
2026-01-13T23:01:37,721   Preparing metadata (pyproject.toml): started
2026-01-13T23:01:37,722   Running command Preparing metadata (pyproject.toml)
2026-01-13T23:01:38,586   running dist_info
2026-01-13T23:01:38,600   creating /tmp/pip-modern-metadata-9hi9kcys/recon.egg-info
2026-01-13T23:01:38,601   writing /tmp/pip-modern-metadata-9hi9kcys/recon.egg-info/PKG-INFO
2026-01-13T23:01:38,607   writing dependency_links to /tmp/pip-modern-metadata-9hi9kcys/recon.egg-info/dependency_links.txt
2026-01-13T23:01:38,610   writing requirements to /tmp/pip-modern-metadata-9hi9kcys/recon.egg-info/requires.txt
2026-01-13T23:01:38,612   writing top-level names to /tmp/pip-modern-metadata-9hi9kcys/recon.egg-info/top_level.txt
2026-01-13T23:01:38,613   writing manifest file '/tmp/pip-modern-metadata-9hi9kcys/recon.egg-info/SOURCES.txt'
2026-01-13T23:01:38,643   reading manifest file '/tmp/pip-modern-metadata-9hi9kcys/recon.egg-info/SOURCES.txt'
2026-01-13T23:01:38,645   adding license file 'LICENSE'
2026-01-13T23:01:38,649   writing manifest file '/tmp/pip-modern-metadata-9hi9kcys/recon.egg-info/SOURCES.txt'
2026-01-13T23:01:38,650   creating '/tmp/pip-modern-metadata-9hi9kcys/recon-0.0.2.dist-info'
2026-01-13T23:01:38,793   Preparing metadata (pyproject.toml): finished with status 'done'
2026-01-13T23:01:38,798   Source in /tmp/pip-wheel-escuryn2/recon_7ae92f90b183438291c12567d962fa37 has version 0.0.2, which satisfies requirement recon==0.0.2 from https://files.pythonhosted.org/packages/e3/46/83d1941971ac9c171d01f6b950d8ed1d3aaa172cc6c430e26e3efaaab76d/recon-0.0.2.tar.gz
2026-01-13T23:01:38,799   Removed recon==0.0.2 from https://files.pythonhosted.org/packages/e3/46/83d1941971ac9c171d01f6b950d8ed1d3aaa172cc6c430e26e3efaaab76d/recon-0.0.2.tar.gz from build tracker '/tmp/pip-build-tracker-hezcbyyp'
2026-01-13T23:01:38,805 Created temporary directory: /tmp/pip-unpack-spw0rjee
2026-01-13T23:01:38,806 Building wheels for collected packages: recon
2026-01-13T23:01:38,811   Created temporary directory: /tmp/pip-wheel-lw3v7w49
2026-01-13T23:01:38,811   Destination directory: /tmp/pip-wheel-lw3v7w49
2026-01-13T23:01:38,814   Building wheel for recon (pyproject.toml): started
2026-01-13T23:01:38,815   Running command Building wheel for recon (pyproject.toml)
2026-01-13T23:01:39,620   running bdist_wheel
2026-01-13T23:01:39,645   running build
2026-01-13T23:01:39,645   running build_py
2026-01-13T23:01:39,653   creating build/lib/recon
2026-01-13T23:01:39,655   copying src/recon/__init__.py -> build/lib/recon
2026-01-13T23:01:39,657   copying src/recon/utils.py -> build/lib/recon
2026-01-13T23:01:39,660   creating build/lib/recon/plot
2026-01-13T23:01:39,661   copying src/recon/plot/sankey_paths.py -> build/lib/recon/plot
2026-01-13T23:01:39,664   copying src/recon/plot/plot_results.py -> build/lib/recon/plot
2026-01-13T23:01:39,666   copying src/recon/plot/__init__.py -> build/lib/recon/plot
2026-01-13T23:01:39,668   copying src/recon/plot/plot_multicell.py -> build/lib/recon/plot
2026-01-13T23:01:39,671   creating build/lib/recon/infer_grn
2026-01-13T23:01:39,672   copying src/recon/infer_grn/__init__.py -> build/lib/recon/infer_grn
2026-01-13T23:01:39,674   copying src/recon/infer_grn/layers.py -> build/lib/recon/infer_grn
2026-01-13T23:01:39,678   creating build/lib/recon/data
2026-01-13T23:01:39,679   copying src/recon/data/__init__.py -> build/lib/recon/data
2026-01-13T23:01:39,681   copying src/recon/data/load_data.py -> build/lib/recon/data
2026-01-13T23:01:39,683   creating build/lib/recon/explore
2026-01-13T23:01:39,684   copying src/recon/explore/__init__.py -> build/lib/recon/explore
2026-01-13T23:01:39,686   copying src/recon/explore/recon.py -> build/lib/recon/explore
2026-01-13T23:01:39,690   creating build/lib/recon/data/receptor_genes
2026-01-13T23:01:39,691   copying src/recon/data/receptor_genes/add_receptor_genes.py -> build/lib/recon/data/receptor_genes
2026-01-13T23:01:39,692   running egg_info
2026-01-13T23:01:39,706   writing src/recon.egg-info/PKG-INFO
2026-01-13T23:01:39,711   writing dependency_links to src/recon.egg-info/dependency_links.txt
2026-01-13T23:01:39,714   writing requirements to src/recon.egg-info/requires.txt
2026-01-13T23:01:39,714   writing top-level names to src/recon.egg-info/top_level.txt
2026-01-13T23:01:39,732   reading manifest file 'src/recon.egg-info/SOURCES.txt'
2026-01-13T23:01:39,736   adding license file 'LICENSE'
2026-01-13T23:01:39,739   writing manifest file 'src/recon.egg-info/SOURCES.txt'
2026-01-13T23:01:39,747   copying src/recon/data/receptor_genes/human_receptor_gene_from_NichenetPKN.parquet -> build/lib/recon/data/receptor_genes
2026-01-13T23:01:39,867   copying src/recon/data/receptor_genes/mouse_receptor_gene_from_NichenetPKN.parquet -> build/lib/recon/data/receptor_genes
2026-01-13T23:01:39,979   copying src/recon/data/receptor_genes/mouse_receptor_gene_from_NichenetPKN.parquet -> build/lib/recon/data/receptor_genes
2026-01-13T23:01:40,103   installing to build/bdist.linux-armv7l/wheel
2026-01-13T23:01:40,103   running install
2026-01-13T23:01:40,127   running install_lib
2026-01-13T23:01:40,136   creating build/bdist.linux-armv7l/wheel
2026-01-13T23:01:40,138   creating build/bdist.linux-armv7l/wheel/recon
2026-01-13T23:01:40,140   creating build/bdist.linux-armv7l/wheel/recon/plot
2026-01-13T23:01:40,142   copying build/lib/recon/plot/sankey_paths.py -> build/bdist.linux-armv7l/wheel/./recon/plot
2026-01-13T23:01:40,146   copying build/lib/recon/plot/plot_results.py -> build/bdist.linux-armv7l/wheel/./recon/plot
2026-01-13T23:01:40,148   copying build/lib/recon/plot/__init__.py -> build/bdist.linux-armv7l/wheel/./recon/plot
2026-01-13T23:01:40,150   copying build/lib/recon/plot/plot_multicell.py -> build/bdist.linux-armv7l/wheel/./recon/plot
2026-01-13T23:01:40,153   creating build/bdist.linux-armv7l/wheel/recon/infer_grn
2026-01-13T23:01:40,154   copying build/lib/recon/infer_grn/__init__.py -> build/bdist.linux-armv7l/wheel/./recon/infer_grn
2026-01-13T23:01:40,157   copying build/lib/recon/infer_grn/layers.py -> build/bdist.linux-armv7l/wheel/./recon/infer_grn
2026-01-13T23:01:40,160   copying build/lib/recon/__init__.py -> build/bdist.linux-armv7l/wheel/./recon
2026-01-13T23:01:40,162   copying build/lib/recon/utils.py -> build/bdist.linux-armv7l/wheel/./recon
2026-01-13T23:01:40,164   creating build/bdist.linux-armv7l/wheel/recon/data
2026-01-13T23:01:40,166   copying build/lib/recon/data/__init__.py -> build/bdist.linux-armv7l/wheel/./recon/data
2026-01-13T23:01:40,168   copying build/lib/recon/data/load_data.py -> build/bdist.linux-armv7l/wheel/./recon/data
2026-01-13T23:01:40,171   creating build/bdist.linux-armv7l/wheel/recon/data/receptor_genes
2026-01-13T23:01:40,172   copying build/lib/recon/data/receptor_genes/human_receptor_gene_from_NichenetPKN.parquet -> build/bdist.linux-armv7l/wheel/./recon/data/receptor_genes
2026-01-13T23:01:40,283   copying build/lib/recon/data/receptor_genes/add_receptor_genes.py -> build/bdist.linux-armv7l/wheel/./recon/data/receptor_genes
2026-01-13T23:01:40,285   copying build/lib/recon/data/receptor_genes/mouse_receptor_gene_from_NichenetPKN.parquet -> build/bdist.linux-armv7l/wheel/./recon/data/receptor_genes
2026-01-13T23:01:40,388   creating build/bdist.linux-armv7l/wheel/recon/explore
2026-01-13T23:01:40,390   copying build/lib/recon/explore/__init__.py -> build/bdist.linux-armv7l/wheel/./recon/explore
2026-01-13T23:01:40,392   copying build/lib/recon/explore/recon.py -> build/bdist.linux-armv7l/wheel/./recon/explore
2026-01-13T23:01:40,395   running install_egg_info
2026-01-13T23:01:40,402   Copying src/recon.egg-info to build/bdist.linux-armv7l/wheel/./recon-0.0.2-py3.11.egg-info
2026-01-13T23:01:40,412   running install_scripts
2026-01-13T23:01:40,424   creating build/bdist.linux-armv7l/wheel/recon-0.0.2.dist-info/WHEEL
2026-01-13T23:01:40,428   creating '/tmp/pip-wheel-lw3v7w49/.tmp-jahhoumn/recon-0.0.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-01-13T23:01:40,431   adding 'recon/__init__.py'
2026-01-13T23:01:40,433   adding 'recon/utils.py'
2026-01-13T23:01:40,435   adding 'recon/data/__init__.py'
2026-01-13T23:01:40,437   adding 'recon/data/load_data.py'
2026-01-13T23:01:40,439   adding 'recon/data/receptor_genes/add_receptor_genes.py'
2026-01-13T23:01:41,454   adding 'recon/data/receptor_genes/human_receptor_gene_from_NichenetPKN.parquet'
2026-01-13T23:01:42,490   adding 'recon/data/receptor_genes/mouse_receptor_gene_from_NichenetPKN.parquet'
2026-01-13T23:01:42,538   adding 'recon/explore/__init__.py'
2026-01-13T23:01:42,543   adding 'recon/explore/recon.py'
2026-01-13T23:01:42,545   adding 'recon/infer_grn/__init__.py'
2026-01-13T23:01:42,548   adding 'recon/infer_grn/layers.py'
2026-01-13T23:01:42,551   adding 'recon/plot/__init__.py'
2026-01-13T23:01:42,553   adding 'recon/plot/plot_multicell.py'
2026-01-13T23:01:42,555   adding 'recon/plot/plot_results.py'
2026-01-13T23:01:42,561   adding 'recon/plot/sankey_paths.py'
2026-01-13T23:01:42,569   adding 'recon-0.0.2.dist-info/licenses/LICENSE'
2026-01-13T23:01:42,571   adding 'recon-0.0.2.dist-info/METADATA'
2026-01-13T23:01:42,573   adding 'recon-0.0.2.dist-info/WHEEL'
2026-01-13T23:01:42,574   adding 'recon-0.0.2.dist-info/top_level.txt'
2026-01-13T23:01:42,576   adding 'recon-0.0.2.dist-info/RECORD'
2026-01-13T23:01:42,728   removing build/bdist.linux-armv7l/wheel
2026-01-13T23:01:42,852   Building wheel for recon (pyproject.toml): finished with status 'done'
2026-01-13T23:01:43,114   Created wheel for recon: filename=recon-0.0.2-py3-none-any.whl size=13392407 sha256=dca9aa68b4d671f6088c14af7c5037a932f633948627cab70ebb15f87ba09cc5
2026-01-13T23:01:43,115   Stored in directory: /tmp/pip-ephem-wheel-cache-ghcan3wq/wheels/ca/34/1c/1b58cbff038d3f238e8c1ac12971c73eec9a200aa364aa7d15
2026-01-13T23:01:43,132 Successfully built recon
2026-01-13T23:01:43,589 Removed build tracker: '/tmp/pip-build-tracker-hezcbyyp'