2026-01-14T14:43:31,586 Created temporary directory: /tmp/pip-ephem-wheel-cache-jwutuw39 2026-01-14T14:43:31,588 Created temporary directory: /tmp/pip-build-tracker-bglrivfi 2026-01-14T14:43:31,588 Initialized build tracking at /tmp/pip-build-tracker-bglrivfi 2026-01-14T14:43:31,589 Created build tracker: /tmp/pip-build-tracker-bglrivfi 2026-01-14T14:43:31,589 Entered build tracker: /tmp/pip-build-tracker-bglrivfi 2026-01-14T14:43:31,590 Created temporary directory: /tmp/pip-wheel-guwws_0y 2026-01-14T14:43:31,593 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-01-14T14:43:31,595 Created temporary directory: /tmp/pip-ephem-wheel-cache-9jpa78e2 2026-01-14T14:43:31,621 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-01-14T14:43:31,624 2 location(s) to search for versions of td2: 2026-01-14T14:43:31,624 * https://pypi.org/simple/td2/ 2026-01-14T14:43:31,624 * https://www.piwheels.org/simple/td2/ 2026-01-14T14:43:31,625 Fetching project page and analyzing links: https://pypi.org/simple/td2/ 2026-01-14T14:43:31,626 Getting page https://pypi.org/simple/td2/ 2026-01-14T14:43:31,627 Found index url https://pypi.org/simple 2026-01-14T14:43:31,841 Fetched page https://pypi.org/simple/td2/ as application/vnd.pypi.simple.v1+json 2026-01-14T14:43:31,845 Skipping link: No binaries permitted for td2: https://files.pythonhosted.org/packages/43/52/258b0d913bfa795951cd68eb8f202e56bb686e2ac215bd537f5e5d8523a9/TD2-0.1.0-py3-none-any.whl (from https://pypi.org/simple/td2/) (requires-python:>=3.8) 2026-01-14T14:43:31,846 Found link https://files.pythonhosted.org/packages/ad/37/151603746c26b5ef38676339bbf67afdb530888937fbb8e1e775f27208ac/td2-0.1.0.tar.gz (from https://pypi.org/simple/td2/) (requires-python:>=3.8), version: 0.1.0 2026-01-14T14:43:31,847 Skipping link: No binaries permitted for td2: https://files.pythonhosted.org/packages/f6/f9/c52c232ea9f0677a8dcc8372c808f2db059730d017e5081a1c0ce151398c/TD2-1.0.0-py3-none-any.whl (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9) 2026-01-14T14:43:31,848 Found link https://files.pythonhosted.org/packages/42/df/2123f303f9668376b0783d67b0dc1d77ab320fcd7cd6499b54d2bbdf24ee/td2-1.0.0.tar.gz (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9), version: 1.0.0 2026-01-14T14:43:31,849 Skipping link: No binaries permitted for td2: https://files.pythonhosted.org/packages/ff/a4/ab6be14acf5c1f585afc4881d8fc05f1aa2ba8985326d9af761acf9feaa4/td2-1.0.1-py3-none-any.whl (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9) 2026-01-14T14:43:31,850 Found link https://files.pythonhosted.org/packages/27/76/0de889e7ac948b0a6c8de999fac74484afebb986c22a31f1541ed61cf3a9/td2-1.0.1.tar.gz (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9), version: 1.0.1 2026-01-14T14:43:31,850 Skipping link: No binaries permitted for td2: https://files.pythonhosted.org/packages/0b/85/7fa6d4c7d930f86d60ad89ece226cabe83198b2f640b4936c9b826934d8e/TD2-1.0.2-py3-none-any.whl (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9) 2026-01-14T14:43:31,851 Skipping link: No binaries permitted for td2: https://files.pythonhosted.org/packages/59/7f/c557088b575b11b930a810c4b08d7947c231bfbd6083e23691ab6d4f35d7/td2-1.0.2-py3-none-any.whl (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9) 2026-01-14T14:43:31,852 Found link https://files.pythonhosted.org/packages/03/86/7cacd5aebbaf6de14d05cd2c46ab4d8214bd5674713e018237f19510054f/td2-1.0.2.tar.gz (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9), version: 1.0.2 2026-01-14T14:43:31,852 Skipping link: No binaries permitted for td2: https://files.pythonhosted.org/packages/9c/12/08401c017e913b8fd32b212039af4a257aad486f53600624d391560eb554/TD2-1.0.3-py3-none-any.whl (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9) 2026-01-14T14:43:31,853 Found link https://files.pythonhosted.org/packages/f1/d4/7572f90f0da85e70bd129c15ed61ae301c5897b5e65d3156c602cf62fa1a/td2-1.0.3.tar.gz (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9), version: 1.0.3 2026-01-14T14:43:31,854 Skipping link: No binaries permitted for td2: https://files.pythonhosted.org/packages/c3/e0/adcb22d02f8881bdfce4a3c89003203115487946a2015cb5350d7c8884f3/TD2-1.0.5-py3-none-any.whl (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9) 2026-01-14T14:43:31,855 Found link https://files.pythonhosted.org/packages/d6/33/ef87f351e48b90f3fe892c982e721592fdbbf7b40d9bf34faf0a3a13198b/td2-1.0.5.tar.gz (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9), version: 1.0.5 2026-01-14T14:43:31,856 Skipping link: No binaries permitted for td2: https://files.pythonhosted.org/packages/ab/bc/6cb935774ae1b624faff92638a3422f0f12aeaf5f61ff820adbbd36464fc/td2-1.0.6-py3-none-any.whl (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9) 2026-01-14T14:43:31,857 Found link https://files.pythonhosted.org/packages/ef/4f/51dd7d1bd195d6e58d3efca71051ccd24219e3ad7c50098ecd63d9d83970/td2-1.0.6.tar.gz (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9), version: 1.0.6 2026-01-14T14:43:31,857 Skipping link: No binaries permitted for td2: https://files.pythonhosted.org/packages/91/09/e6b5b77a22ae4b1ba61570290521443af62c352ebf233e3cf759c273a28f/td2-1.0.7-py3-none-any.whl (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9) 2026-01-14T14:43:31,858 Found link https://files.pythonhosted.org/packages/4f/2d/a780cc5ead61cf0815ca9d553533cea7e9a78e439432b19c5b98700a70c6/td2-1.0.7.tar.gz (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9), version: 1.0.7 2026-01-14T14:43:31,859 Skipping link: No binaries permitted for td2: https://files.pythonhosted.org/packages/a0/2b/389c465b2ef974a0026df17383e31ef987e7afe13905fed462c90eb3bacd/td2-1.0.8-py3-none-any.whl (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9) 2026-01-14T14:43:31,860 Found link https://files.pythonhosted.org/packages/1c/54/4993afb799b2da259e1a5c7a9030dc6851f18b17e955728d7b31ce0a872c/td2-1.0.8.tar.gz (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9), version: 1.0.8 2026-01-14T14:43:31,861 Fetching project page and analyzing links: https://www.piwheels.org/simple/td2/ 2026-01-14T14:43:31,861 Getting page https://www.piwheels.org/simple/td2/ 2026-01-14T14:43:31,863 Found index url https://www.piwheels.org/simple 2026-01-14T14:43:32,065 Fetched page https://www.piwheels.org/simple/td2/ as text/html 2026-01-14T14:43:32,068 Skipping link: No binaries permitted for td2: https://www.piwheels.org/simple/td2/td2-1.0.7-py3-none-any.whl#sha256=3c6f782386166cea654790740affad1c75ed2897d476e6b5057d41cc1ee40544 (from https://www.piwheels.org/simple/td2/) (requires-python:>=3.9, <3.13) 2026-01-14T14:43:32,069 Skipping link: No binaries permitted for td2: https://archive1.piwheels.org/simple/td2/td2-1.0.6-py3-none-any.whl#sha256=036476c742d1f379694335713c2332f65ac1a3aff11da540ca2963a72e530f18 (from https://www.piwheels.org/simple/td2/) (requires-python:>=3.9, <3.13) 2026-01-14T14:43:32,070 Skipping link: No binaries permitted for td2: https://archive1.piwheels.org/simple/td2/td2-1.0.5-py3-none-any.whl#sha256=09e084f02acf615c53f50a29b00bf08971b806a3ab1eb60d1019227f7e92eb7c (from https://www.piwheels.org/simple/td2/) (requires-python:>=3.9, <3.13) 2026-01-14T14:43:32,070 Skipping link: No binaries permitted for td2: https://archive1.piwheels.org/simple/td2/td2-1.0.3-py3-none-any.whl#sha256=7f47b70ec5e865a83e73c173f75fff821f550fe092c77b1898bc9bc12e23872d (from https://www.piwheels.org/simple/td2/) (requires-python:>=3.9, <3.13) 2026-01-14T14:43:32,071 Skipping link: No binaries permitted for td2: https://archive1.piwheels.org/simple/td2/td2-1.0.2-py3-none-any.whl#sha256=94ae7a7132596b9a383262b643caa9c9353ca36fce313b3cd7ad471f5aae0607 (from https://www.piwheels.org/simple/td2/) (requires-python:>=3.9, <3.13) 2026-01-14T14:43:32,071 Skipping link: No binaries permitted for td2: https://archive1.piwheels.org/simple/td2/td2-1.0.1-py3-none-any.whl#sha256=8c2dbb85f1878bd9ee408cf25a898ede78c5fd23f195feebb2dfe45f6c4d2f71 (from https://www.piwheels.org/simple/td2/) (requires-python:>=3.9, <3.13) 2026-01-14T14:43:32,072 Skipping link: No binaries permitted for td2: https://archive1.piwheels.org/simple/td2/TD2-1.0.0-py3-none-any.whl#sha256=43bbd429280f386d4b2ece6c595361d46faf2e27fdad8718c138f6c6939b666a (from https://www.piwheels.org/simple/td2/) (requires-python:>=3.9, <3.13) 2026-01-14T14:43:32,072 Skipping link: No binaries permitted for td2: https://archive1.piwheels.org/simple/td2/TD2-0.1.0-py3-none-any.whl#sha256=4507f8bdeadbc4ccf6326f26068254f66be05e8371ee1f05b27e0f616670f199 (from https://www.piwheels.org/simple/td2/) (requires-python:>=3.8) 2026-01-14T14:43:32,073 Skipping link: not a file: https://www.piwheels.org/simple/td2/ 2026-01-14T14:43:32,073 Skipping link: not a file: https://pypi.org/simple/td2/ 2026-01-14T14:43:32,093 Given no hashes to check 1 links for project 'td2': discarding no candidates 2026-01-14T14:43:32,111 Collecting td2==1.0.8 2026-01-14T14:43:32,114 Created temporary directory: /tmp/pip-unpack-9v40l7xe 2026-01-14T14:43:32,247 Downloading td2-1.0.8.tar.gz (38 kB) 2026-01-14T14:43:32,398 Added td2==1.0.8 from https://files.pythonhosted.org/packages/1c/54/4993afb799b2da259e1a5c7a9030dc6851f18b17e955728d7b31ce0a872c/td2-1.0.8.tar.gz to build tracker '/tmp/pip-build-tracker-bglrivfi' 2026-01-14T14:43:32,400 Running setup.py (path:/tmp/pip-wheel-guwws_0y/td2_98e9fef982a54a6696f9cfd14b289d36/setup.py) egg_info for package td2 2026-01-14T14:43:32,401 Created temporary directory: /tmp/pip-pip-egg-info-io07vkgv 2026-01-14T14:43:32,402 Preparing metadata (setup.py): started 2026-01-14T14:43:32,403 Running command python setup.py egg_info 2026-01-14T14:43:33,336 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-01-14T14:43:33,337 !! 2026-01-14T14:43:33,338 ******************************************************************************** 2026-01-14T14:43:33,339 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-01-14T14:43:33,340 License :: OSI Approved :: MIT License 2026-01-14T14:43:33,341 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-01-14T14:43:33,341 ******************************************************************************** 2026-01-14T14:43:33,342 !! 2026-01-14T14:43:33,343 self._finalize_license_expression() 2026-01-14T14:43:33,366 running egg_info 2026-01-14T14:43:33,394 creating /tmp/pip-pip-egg-info-io07vkgv/TD2.egg-info 2026-01-14T14:43:33,395 writing /tmp/pip-pip-egg-info-io07vkgv/TD2.egg-info/PKG-INFO 2026-01-14T14:43:33,401 writing dependency_links to /tmp/pip-pip-egg-info-io07vkgv/TD2.egg-info/dependency_links.txt 2026-01-14T14:43:33,403 writing entry points to /tmp/pip-pip-egg-info-io07vkgv/TD2.egg-info/entry_points.txt 2026-01-14T14:43:33,406 writing requirements to /tmp/pip-pip-egg-info-io07vkgv/TD2.egg-info/requires.txt 2026-01-14T14:43:33,408 writing top-level names to /tmp/pip-pip-egg-info-io07vkgv/TD2.egg-info/top_level.txt 2026-01-14T14:43:33,409 writing manifest file '/tmp/pip-pip-egg-info-io07vkgv/TD2.egg-info/SOURCES.txt' 2026-01-14T14:43:33,521 reading manifest file '/tmp/pip-pip-egg-info-io07vkgv/TD2.egg-info/SOURCES.txt' 2026-01-14T14:43:33,523 reading manifest template 'MANIFEST.in' 2026-01-14T14:43:33,524 warning: no files found matching 'tables/table_*.json' 2026-01-14T14:43:33,524 adding license file 'LICENSE.txt' 2026-01-14T14:43:33,528 writing manifest file '/tmp/pip-pip-egg-info-io07vkgv/TD2.egg-info/SOURCES.txt' 2026-01-14T14:43:33,637 Preparing metadata (setup.py): finished with status 'done' 2026-01-14T14:43:33,641 Source in /tmp/pip-wheel-guwws_0y/td2_98e9fef982a54a6696f9cfd14b289d36 has version 1.0.8, which satisfies requirement td2==1.0.8 from https://files.pythonhosted.org/packages/1c/54/4993afb799b2da259e1a5c7a9030dc6851f18b17e955728d7b31ce0a872c/td2-1.0.8.tar.gz 2026-01-14T14:43:33,642 Removed td2==1.0.8 from https://files.pythonhosted.org/packages/1c/54/4993afb799b2da259e1a5c7a9030dc6851f18b17e955728d7b31ce0a872c/td2-1.0.8.tar.gz from build tracker '/tmp/pip-build-tracker-bglrivfi' 2026-01-14T14:43:33,648 Created temporary directory: /tmp/pip-unpack-tffwlaf_ 2026-01-14T14:43:33,649 Building wheels for collected packages: td2 2026-01-14T14:43:33,654 Created temporary directory: /tmp/pip-wheel-81ich4b8 2026-01-14T14:43:33,654 Building wheel for td2 (setup.py): started 2026-01-14T14:43:33,655 Destination directory: /tmp/pip-wheel-81ich4b8 2026-01-14T14:43:33,656 Running command python setup.py bdist_wheel 2026-01-14T14:43:34,514 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-01-14T14:43:34,514 !! 2026-01-14T14:43:34,515 ******************************************************************************** 2026-01-14T14:43:34,516 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-01-14T14:43:34,517 License :: OSI Approved :: MIT License 2026-01-14T14:43:34,518 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-01-14T14:43:34,518 ******************************************************************************** 2026-01-14T14:43:34,520 !! 2026-01-14T14:43:34,520 self._finalize_license_expression() 2026-01-14T14:43:34,521 running bdist_wheel 2026-01-14T14:43:34,660 running build 2026-01-14T14:43:34,661 running build_py 2026-01-14T14:43:34,695 creating build/lib/tests 2026-01-14T14:43:34,697 copying tests/test_find_orfs_real.py -> build/lib/tests 2026-01-14T14:43:34,700 copying tests/ambiguous_codon_test.py -> build/lib/tests 2026-01-14T14:43:34,703 copying tests/partition_mane.py -> build/lib/tests 2026-01-14T14:43:34,705 copying tests/__init__.py -> build/lib/tests 2026-01-14T14:43:34,707 copying tests/visualize_benchmark.py -> build/lib/tests 2026-01-14T14:43:34,709 copying tests/visualize_mane_composition.py -> build/lib/tests 2026-01-14T14:43:34,711 copying tests/visualize_chess.py -> build/lib/tests 2026-01-14T14:43:34,714 copying tests/test_find_orfs.py -> build/lib/tests 2026-01-14T14:43:34,716 copying tests/compare_peps.py -> build/lib/tests 2026-01-14T14:43:34,719 copying tests/test_reverse_complement.py -> build/lib/tests 2026-01-14T14:43:34,721 copying tests/test_translate.py -> build/lib/tests 2026-01-14T14:43:34,723 copying tests/longorfs_low_memory.py -> build/lib/tests 2026-01-14T14:43:34,726 creating build/lib/TD2 2026-01-14T14:43:34,728 copying TD2/__init__.py -> build/lib/TD2 2026-01-14T14:43:34,730 copying TD2/translator.py -> build/lib/TD2 2026-01-14T14:43:34,732 copying TD2/Predict.py -> build/lib/TD2 2026-01-14T14:43:34,735 copying TD2/get_tables.py -> build/lib/TD2 2026-01-14T14:43:34,738 copying TD2/help.py -> build/lib/TD2 2026-01-14T14:43:34,740 copying TD2/LongOrfs.py -> build/lib/TD2 2026-01-14T14:43:34,744 creating build/lib/api 2026-01-14T14:43:34,745 copying api/__init__.py -> build/lib/api 2026-01-14T14:43:34,748 creating build/lib/tests/data 2026-01-14T14:43:34,749 copying tests/data/__init__.py -> build/lib/tests/data 2026-01-14T14:43:34,752 creating build/lib/TD2/tables 2026-01-14T14:43:34,754 copying TD2/tables/__init__.py -> build/lib/TD2/tables 2026-01-14T14:43:34,755 running egg_info 2026-01-14T14:43:34,785 writing TD2.egg-info/PKG-INFO 2026-01-14T14:43:34,790 writing dependency_links to TD2.egg-info/dependency_links.txt 2026-01-14T14:43:34,793 writing entry points to TD2.egg-info/entry_points.txt 2026-01-14T14:43:34,796 writing requirements to TD2.egg-info/requires.txt 2026-01-14T14:43:34,798 writing top-level names to TD2.egg-info/top_level.txt 2026-01-14T14:43:34,848 reading manifest file 'TD2.egg-info/SOURCES.txt' 2026-01-14T14:43:34,853 reading manifest template 'MANIFEST.in' 2026-01-14T14:43:34,854 warning: no files found matching 'tables/table_*.json' 2026-01-14T14:43:34,855 adding license file 'LICENSE.txt' 2026-01-14T14:43:34,859 writing manifest file 'TD2.egg-info/SOURCES.txt' 2026-01-14T14:43:34,875 copying TD2/tables/table_1.json -> build/lib/TD2/tables 2026-01-14T14:43:34,878 copying TD2/tables/table_2.json -> build/lib/TD2/tables 2026-01-14T14:43:34,881 copying TD2/tables/table_3.json -> build/lib/TD2/tables 2026-01-14T14:43:34,884 copying TD2/tables/table_4.json -> build/lib/TD2/tables 2026-01-14T14:43:34,886 copying TD2/tables/table_5.json -> build/lib/TD2/tables 2026-01-14T14:43:34,889 copying TD2/tables/table_6.json -> build/lib/TD2/tables 2026-01-14T14:43:34,891 copying TD2/tables/table_9.json -> build/lib/TD2/tables 2026-01-14T14:43:34,894 copying TD2/tables/table_10.json -> build/lib/TD2/tables 2026-01-14T14:43:34,897 copying TD2/tables/table_11.json -> build/lib/TD2/tables 2026-01-14T14:43:34,900 copying TD2/tables/table_12.json -> build/lib/TD2/tables 2026-01-14T14:43:34,902 copying TD2/tables/table_13.json -> build/lib/TD2/tables 2026-01-14T14:43:34,905 copying TD2/tables/table_14.json -> build/lib/TD2/tables 2026-01-14T14:43:34,908 copying TD2/tables/table_15.json -> build/lib/TD2/tables 2026-01-14T14:43:34,911 copying TD2/tables/table_16.json -> build/lib/TD2/tables 2026-01-14T14:43:34,914 copying TD2/tables/table_21.json -> build/lib/TD2/tables 2026-01-14T14:43:34,916 copying TD2/tables/table_22.json -> build/lib/TD2/tables 2026-01-14T14:43:34,919 copying TD2/tables/table_23.json -> build/lib/TD2/tables 2026-01-14T14:43:34,922 copying TD2/tables/table_24.json -> build/lib/TD2/tables 2026-01-14T14:43:34,925 copying TD2/tables/table_25.json -> build/lib/TD2/tables 2026-01-14T14:43:34,927 copying TD2/tables/table_26.json -> build/lib/TD2/tables 2026-01-14T14:43:34,930 copying TD2/tables/table_27.json -> build/lib/TD2/tables 2026-01-14T14:43:34,933 copying TD2/tables/table_28.json -> build/lib/TD2/tables 2026-01-14T14:43:34,935 copying TD2/tables/table_29.json -> build/lib/TD2/tables 2026-01-14T14:43:34,938 copying TD2/tables/table_30.json -> build/lib/TD2/tables 2026-01-14T14:43:34,941 copying TD2/tables/table_31.json -> build/lib/TD2/tables 2026-01-14T14:43:34,944 copying TD2/tables/table_33.json -> build/lib/TD2/tables 2026-01-14T14:43:34,989 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2026-01-14T14:43:34,989 !! 2026-01-14T14:43:34,990 ******************************************************************************** 2026-01-14T14:43:34,991 Please avoid running ``setup.py`` directly. 2026-01-14T14:43:34,992 Instead, use pypa/build, pypa/installer or other 2026-01-14T14:43:34,992 standards-based tools. 2026-01-14T14:43:34,993 This deprecation is overdue, please update your project and remove deprecated 2026-01-14T14:43:34,994 calls to avoid build errors in the future. 2026-01-14T14:43:34,995 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2026-01-14T14:43:34,995 ******************************************************************************** 2026-01-14T14:43:34,997 !! 2026-01-14T14:43:34,997 self.initialize_options() 2026-01-14T14:43:35,023 installing to build/bdist.linux-armv7l/wheel 2026-01-14T14:43:35,024 running install 2026-01-14T14:43:35,049 running install_lib 2026-01-14T14:43:35,078 creating build/bdist.linux-armv7l/wheel 2026-01-14T14:43:35,080 creating build/bdist.linux-armv7l/wheel/tests 2026-01-14T14:43:35,082 copying build/lib/tests/test_find_orfs_real.py -> build/bdist.linux-armv7l/wheel/./tests 2026-01-14T14:43:35,085 copying build/lib/tests/ambiguous_codon_test.py -> build/bdist.linux-armv7l/wheel/./tests 2026-01-14T14:43:35,088 copying build/lib/tests/partition_mane.py -> build/bdist.linux-armv7l/wheel/./tests 2026-01-14T14:43:35,091 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./tests 2026-01-14T14:43:35,093 copying build/lib/tests/visualize_benchmark.py -> build/bdist.linux-armv7l/wheel/./tests 2026-01-14T14:43:35,095 copying build/lib/tests/visualize_mane_composition.py -> build/bdist.linux-armv7l/wheel/./tests 2026-01-14T14:43:35,098 copying build/lib/tests/visualize_chess.py -> build/bdist.linux-armv7l/wheel/./tests 2026-01-14T14:43:35,100 creating build/bdist.linux-armv7l/wheel/tests/data 2026-01-14T14:43:35,102 copying build/lib/tests/data/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/data 2026-01-14T14:43:35,104 copying build/lib/tests/test_find_orfs.py -> build/bdist.linux-armv7l/wheel/./tests 2026-01-14T14:43:35,106 copying build/lib/tests/compare_peps.py -> build/bdist.linux-armv7l/wheel/./tests 2026-01-14T14:43:35,109 copying build/lib/tests/test_reverse_complement.py -> build/bdist.linux-armv7l/wheel/./tests 2026-01-14T14:43:35,111 copying build/lib/tests/test_translate.py -> build/bdist.linux-armv7l/wheel/./tests 2026-01-14T14:43:35,113 copying build/lib/tests/longorfs_low_memory.py -> build/bdist.linux-armv7l/wheel/./tests 2026-01-14T14:43:35,117 creating build/bdist.linux-armv7l/wheel/TD2 2026-01-14T14:43:35,118 copying build/lib/TD2/__init__.py -> build/bdist.linux-armv7l/wheel/./TD2 2026-01-14T14:43:35,120 copying build/lib/TD2/translator.py -> build/bdist.linux-armv7l/wheel/./TD2 2026-01-14T14:43:35,123 copying build/lib/TD2/Predict.py -> build/bdist.linux-armv7l/wheel/./TD2 2026-01-14T14:43:35,126 copying build/lib/TD2/get_tables.py -> build/bdist.linux-armv7l/wheel/./TD2 2026-01-14T14:43:35,130 creating build/bdist.linux-armv7l/wheel/TD2/tables 2026-01-14T14:43:35,132 copying build/lib/TD2/tables/table_26.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-14T14:43:35,134 copying build/lib/TD2/tables/table_29.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-14T14:43:35,137 copying build/lib/TD2/tables/table_21.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-14T14:43:35,139 copying build/lib/TD2/tables/table_3.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-14T14:43:35,142 copying build/lib/TD2/tables/__init__.py -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-14T14:43:35,143 copying build/lib/TD2/tables/table_11.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-14T14:43:35,146 copying build/lib/TD2/tables/table_31.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-14T14:43:35,148 copying build/lib/TD2/tables/table_25.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-14T14:43:35,150 copying build/lib/TD2/tables/table_13.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-14T14:43:35,153 copying build/lib/TD2/tables/table_12.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-14T14:43:35,155 copying build/lib/TD2/tables/table_24.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-14T14:43:35,158 copying build/lib/TD2/tables/table_33.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-14T14:43:35,160 copying build/lib/TD2/tables/table_10.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-14T14:43:35,163 copying build/lib/TD2/tables/table_27.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-14T14:43:35,166 copying build/lib/TD2/tables/table_1.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-14T14:43:35,168 copying build/lib/TD2/tables/table_23.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-14T14:43:35,171 copying build/lib/TD2/tables/table_14.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-14T14:43:35,174 copying build/lib/TD2/tables/table_6.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-14T14:43:35,176 copying build/lib/TD2/tables/table_16.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-14T14:43:35,178 copying build/lib/TD2/tables/table_22.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-14T14:43:35,181 copying build/lib/TD2/tables/table_5.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-14T14:43:35,183 copying build/lib/TD2/tables/table_9.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-14T14:43:35,185 copying build/lib/TD2/tables/table_2.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-14T14:43:35,187 copying build/lib/TD2/tables/table_28.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-14T14:43:35,190 copying build/lib/TD2/tables/table_15.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-14T14:43:35,192 copying build/lib/TD2/tables/table_30.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-14T14:43:35,194 copying build/lib/TD2/tables/table_4.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2026-01-14T14:43:35,196 copying build/lib/TD2/help.py -> build/bdist.linux-armv7l/wheel/./TD2 2026-01-14T14:43:35,198 copying build/lib/TD2/LongOrfs.py -> build/bdist.linux-armv7l/wheel/./TD2 2026-01-14T14:43:35,201 creating build/bdist.linux-armv7l/wheel/api 2026-01-14T14:43:35,203 copying build/lib/api/__init__.py -> build/bdist.linux-armv7l/wheel/./api 2026-01-14T14:43:35,204 running install_egg_info 2026-01-14T14:43:35,240 Copying TD2.egg-info to build/bdist.linux-armv7l/wheel/./TD2-1.0.8-py3.11.egg-info 2026-01-14T14:43:35,254 running install_scripts 2026-01-14T14:43:35,269 creating build/bdist.linux-armv7l/wheel/td2-1.0.8.dist-info/WHEEL 2026-01-14T14:43:35,272 creating '/tmp/pip-wheel-81ich4b8/td2-1.0.8-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-01-14T14:43:35,276 adding 'TD2/LongOrfs.py' 2026-01-14T14:43:35,280 adding 'TD2/Predict.py' 2026-01-14T14:43:35,281 adding 'TD2/__init__.py' 2026-01-14T14:43:35,284 adding 'TD2/get_tables.py' 2026-01-14T14:43:35,285 adding 'TD2/help.py' 2026-01-14T14:43:35,287 adding 'TD2/translator.py' 2026-01-14T14:43:35,289 adding 'TD2/tables/__init__.py' 2026-01-14T14:43:35,291 adding 'TD2/tables/table_1.json' 2026-01-14T14:43:35,292 adding 'TD2/tables/table_10.json' 2026-01-14T14:43:35,294 adding 'TD2/tables/table_11.json' 2026-01-14T14:43:35,296 adding 'TD2/tables/table_12.json' 2026-01-14T14:43:35,297 adding 'TD2/tables/table_13.json' 2026-01-14T14:43:35,299 adding 'TD2/tables/table_14.json' 2026-01-14T14:43:35,300 adding 'TD2/tables/table_15.json' 2026-01-14T14:43:35,302 adding 'TD2/tables/table_16.json' 2026-01-14T14:43:35,303 adding 'TD2/tables/table_2.json' 2026-01-14T14:43:35,305 adding 'TD2/tables/table_21.json' 2026-01-14T14:43:35,306 adding 'TD2/tables/table_22.json' 2026-01-14T14:43:35,308 adding 'TD2/tables/table_23.json' 2026-01-14T14:43:35,309 adding 'TD2/tables/table_24.json' 2026-01-14T14:43:35,311 adding 'TD2/tables/table_25.json' 2026-01-14T14:43:35,313 adding 'TD2/tables/table_26.json' 2026-01-14T14:43:35,314 adding 'TD2/tables/table_27.json' 2026-01-14T14:43:35,316 adding 'TD2/tables/table_28.json' 2026-01-14T14:43:35,317 adding 'TD2/tables/table_29.json' 2026-01-14T14:43:35,319 adding 'TD2/tables/table_3.json' 2026-01-14T14:43:35,320 adding 'TD2/tables/table_30.json' 2026-01-14T14:43:35,322 adding 'TD2/tables/table_31.json' 2026-01-14T14:43:35,323 adding 'TD2/tables/table_33.json' 2026-01-14T14:43:35,325 adding 'TD2/tables/table_4.json' 2026-01-14T14:43:35,326 adding 'TD2/tables/table_5.json' 2026-01-14T14:43:35,328 adding 'TD2/tables/table_6.json' 2026-01-14T14:43:35,329 adding 'TD2/tables/table_9.json' 2026-01-14T14:43:35,331 adding 'api/__init__.py' 2026-01-14T14:43:35,333 adding 'td2-1.0.8.dist-info/licenses/LICENSE.txt' 2026-01-14T14:43:35,335 adding 'tests/__init__.py' 2026-01-14T14:43:35,337 adding 'tests/ambiguous_codon_test.py' 2026-01-14T14:43:35,339 adding 'tests/compare_peps.py' 2026-01-14T14:43:35,341 adding 'tests/longorfs_low_memory.py' 2026-01-14T14:43:35,343 adding 'tests/partition_mane.py' 2026-01-14T14:43:35,344 adding 'tests/test_find_orfs.py' 2026-01-14T14:43:35,347 adding 'tests/test_find_orfs_real.py' 2026-01-14T14:43:35,348 adding 'tests/test_reverse_complement.py' 2026-01-14T14:43:35,349 adding 'tests/test_translate.py' 2026-01-14T14:43:35,350 adding 'tests/visualize_benchmark.py' 2026-01-14T14:43:35,352 adding 'tests/visualize_chess.py' 2026-01-14T14:43:35,353 adding 'tests/visualize_mane_composition.py' 2026-01-14T14:43:35,355 adding 'tests/data/__init__.py' 2026-01-14T14:43:35,356 adding 'td2-1.0.8.dist-info/METADATA' 2026-01-14T14:43:35,357 adding 'td2-1.0.8.dist-info/WHEEL' 2026-01-14T14:43:35,358 adding 'td2-1.0.8.dist-info/entry_points.txt' 2026-01-14T14:43:35,359 adding 'td2-1.0.8.dist-info/top_level.txt' 2026-01-14T14:43:35,360 adding 'td2-1.0.8.dist-info/RECORD' 2026-01-14T14:43:35,362 removing build/bdist.linux-armv7l/wheel 2026-01-14T14:43:35,489 Building wheel for td2 (setup.py): finished with status 'done' 2026-01-14T14:43:35,492 Created wheel for td2: filename=td2-1.0.8-py3-none-any.whl size=55531 sha256=944490d97bf8993312b1bf67261afdcb5d0d3cfa6dd20e6b7742099438a69562 2026-01-14T14:43:35,493 Stored in directory: /tmp/pip-ephem-wheel-cache-9jpa78e2/wheels/8a/4d/b9/2359deb8095dfaf5ac9b5f69d84d6cb7d934e8241d08a9b272 2026-01-14T14:43:35,505 Successfully built td2 2026-01-14T14:43:35,510 Removed build tracker: '/tmp/pip-build-tracker-bglrivfi'