2026-01-14T16:50:53,253 Created temporary directory: /tmp/pip-ephem-wheel-cache-ckbalpqs 2026-01-14T16:50:53,254 Created temporary directory: /tmp/pip-build-tracker-bjjn9mca 2026-01-14T16:50:53,255 Initialized build tracking at /tmp/pip-build-tracker-bjjn9mca 2026-01-14T16:50:53,255 Created build tracker: /tmp/pip-build-tracker-bjjn9mca 2026-01-14T16:50:53,256 Entered build tracker: /tmp/pip-build-tracker-bjjn9mca 2026-01-14T16:50:53,257 Created temporary directory: /tmp/pip-wheel-medex024 2026-01-14T16:50:53,260 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-01-14T16:50:53,262 Created temporary directory: /tmp/pip-ephem-wheel-cache-njhf0w4a 2026-01-14T16:50:53,283 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-01-14T16:50:53,287 2 location(s) to search for versions of aoptk: 2026-01-14T16:50:53,287 * https://pypi.org/simple/aoptk/ 2026-01-14T16:50:53,287 * https://www.piwheels.org/simple/aoptk/ 2026-01-14T16:50:53,288 Fetching project page and analyzing links: https://pypi.org/simple/aoptk/ 2026-01-14T16:50:53,288 Getting page https://pypi.org/simple/aoptk/ 2026-01-14T16:50:53,290 Found index url https://pypi.org/simple 2026-01-14T16:50:53,432 Fetched page https://pypi.org/simple/aoptk/ as application/vnd.pypi.simple.v1+json 2026-01-14T16:50:53,434 Skipping link: No binaries permitted for aoptk: https://files.pythonhosted.org/packages/4b/d6/384d5602117668d9368aaf2151a9b9eef9040cad1af0597c4a61a431dc32/aoptk-0.1.0-py3-none-any.whl (from https://pypi.org/simple/aoptk/) (requires-python:>=3.8) 2026-01-14T16:50:53,435 Found link https://files.pythonhosted.org/packages/3c/0b/6ee2e5619ce9230307113c992ace76e126a0afe211e6cff0114e5e21c555/aoptk-0.1.0.tar.gz (from https://pypi.org/simple/aoptk/) (requires-python:>=3.8), version: 0.1.0 2026-01-14T16:50:53,436 Skipping link: No binaries permitted for aoptk: https://files.pythonhosted.org/packages/39/08/e2621f4b2faf8e16aab6437af0245042fa1f56eb9e6d5b8a3497b0e4a42f/aoptk-0.1.1-py3-none-any.whl (from https://pypi.org/simple/aoptk/) (requires-python:>=3.8) 2026-01-14T16:50:53,437 Found link https://files.pythonhosted.org/packages/21/59/05f875bd1dd4c4edac306e1e85fc6c589b2fa00f94693287fd2249007416/aoptk-0.1.1.tar.gz (from https://pypi.org/simple/aoptk/) (requires-python:>=3.8), version: 0.1.1 2026-01-14T16:50:53,438 Fetching project page and analyzing links: https://www.piwheels.org/simple/aoptk/ 2026-01-14T16:50:53,439 Getting page https://www.piwheels.org/simple/aoptk/ 2026-01-14T16:50:53,440 Found index url https://www.piwheels.org/simple 2026-01-14T16:50:53,597 Fetched page https://www.piwheels.org/simple/aoptk/ as text/html 2026-01-14T16:50:53,598 Skipping link: No binaries permitted for aoptk: https://www.piwheels.org/simple/aoptk/aoptk-0.1.0-py3-none-any.whl#sha256=198d0fc25eadbf1d18fa9ad643921c7ef552f7e75b1184be0690a45dfbf94086 (from https://www.piwheels.org/simple/aoptk/) (requires-python:>=3.8) 2026-01-14T16:50:53,599 Skipping link: not a file: https://www.piwheels.org/simple/aoptk/ 2026-01-14T16:50:53,600 Skipping link: not a file: https://pypi.org/simple/aoptk/ 2026-01-14T16:50:53,620 Given no hashes to check 1 links for project 'aoptk': discarding no candidates 2026-01-14T16:50:53,640 Collecting aoptk==0.1.1 2026-01-14T16:50:53,642 Created temporary directory: /tmp/pip-unpack-5qczo5zx 2026-01-14T16:50:53,858 Downloading aoptk-0.1.1.tar.gz (167 kB) 2026-01-14T16:50:54,137 Added aoptk==0.1.1 from https://files.pythonhosted.org/packages/21/59/05f875bd1dd4c4edac306e1e85fc6c589b2fa00f94693287fd2249007416/aoptk-0.1.1.tar.gz to build tracker '/tmp/pip-build-tracker-bjjn9mca' 2026-01-14T16:50:54,145 Created temporary directory: /tmp/pip-build-env-4po7zzan 2026-01-14T16:50:54,150 Installing build dependencies: started 2026-01-14T16:50:54,151 Running command pip subprocess to install build dependencies 2026-01-14T16:50:55,286 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-01-14T16:50:55,943 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-01-14T16:50:55,966 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-01-14T16:50:57,684 Collecting setuptools>=64.0.0 2026-01-14T16:50:57,793 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2026-01-14T16:50:58,168 Collecting setuptools-scm 2026-01-14T16:50:58,190 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-9.2.2-py3-none-any.whl (62 kB) 2026-01-14T16:50:58,416 Collecting wheel 2026-01-14T16:50:58,433 Using cached https://www.piwheels.org/simple/wheel/wheel-0.45.1-py3-none-any.whl (72 kB) 2026-01-14T16:50:58,622 Collecting packaging>=20 2026-01-14T16:50:58,638 Using cached https://www.piwheels.org/simple/packaging/packaging-25.0-py3-none-any.whl (66 kB) 2026-01-14T16:51:01,664 Installing collected packages: wheel, setuptools, packaging, setuptools-scm 2026-01-14T16:51:01,907 Creating /tmp/pip-build-env-4po7zzan/overlay/local/bin 2026-01-14T16:51:01,909 changing mode of /tmp/pip-build-env-4po7zzan/overlay/local/bin/wheel to 755 2026-01-14T16:51:05,844 changing mode of /tmp/pip-build-env-4po7zzan/overlay/local/bin/setuptools-scm to 755 2026-01-14T16:51:05,873 Successfully installed packaging-25.0 setuptools-80.9.0 setuptools-scm-9.2.2 wheel-0.45.1 2026-01-14T16:51:06,163 Installing build dependencies: finished with status 'done' 2026-01-14T16:51:06,169 Getting requirements to build wheel: started 2026-01-14T16:51:06,170 Running command Getting requirements to build wheel 2026-01-14T16:51:06,782 toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section 2026-01-14T16:51:06,818 /tmp/pip-build-env-4po7zzan/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-01-14T16:51:06,819 !! 2026-01-14T16:51:06,820 ******************************************************************************** 2026-01-14T16:51:06,820 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-01-14T16:51:06,821 By 2026-Feb-18, you need to update your project and remove deprecated calls 2026-01-14T16:51:06,822 or your builds will no longer be supported. 2026-01-14T16:51:06,823 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-01-14T16:51:06,823 ******************************************************************************** 2026-01-14T16:51:06,824 !! 2026-01-14T16:51:06,825 corresp(dist, value, root_dir) 2026-01-14T16:51:06,922 running egg_info 2026-01-14T16:51:06,931 writing src/aoptk.egg-info/PKG-INFO 2026-01-14T16:51:06,935 writing dependency_links to src/aoptk.egg-info/dependency_links.txt 2026-01-14T16:51:06,937 writing entry points to src/aoptk.egg-info/entry_points.txt 2026-01-14T16:51:06,939 writing requirements to src/aoptk.egg-info/requires.txt 2026-01-14T16:51:06,940 writing top-level names to src/aoptk.egg-info/top_level.txt 2026-01-14T16:51:06,999 listing git files failed - pretending there aren't any 2026-01-14T16:51:07,006 reading manifest file 'src/aoptk.egg-info/SOURCES.txt' 2026-01-14T16:51:07,015 reading manifest template 'MANIFEST.in' 2026-01-14T16:51:07,016 warning: no files found matching 'NOTICE' 2026-01-14T16:51:07,017 adding license file 'LICENSE' 2026-01-14T16:51:07,024 writing manifest file 'src/aoptk.egg-info/SOURCES.txt' 2026-01-14T16:51:07,125 Getting requirements to build wheel: finished with status 'done' 2026-01-14T16:51:07,128 Created temporary directory: /tmp/pip-modern-metadata-r41idqi6 2026-01-14T16:51:07,130 Preparing metadata (pyproject.toml): started 2026-01-14T16:51:07,132 Running command Preparing metadata (pyproject.toml) 2026-01-14T16:51:07,699 toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section 2026-01-14T16:51:07,735 /tmp/pip-build-env-4po7zzan/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-01-14T16:51:07,736 !! 2026-01-14T16:51:07,737 ******************************************************************************** 2026-01-14T16:51:07,737 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-01-14T16:51:07,738 By 2026-Feb-18, you need to update your project and remove deprecated calls 2026-01-14T16:51:07,739 or your builds will no longer be supported. 2026-01-14T16:51:07,740 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-01-14T16:51:07,740 ******************************************************************************** 2026-01-14T16:51:07,741 !! 2026-01-14T16:51:07,741 corresp(dist, value, root_dir) 2026-01-14T16:51:07,843 running dist_info 2026-01-14T16:51:07,858 creating /tmp/pip-modern-metadata-r41idqi6/aoptk.egg-info 2026-01-14T16:51:07,859 writing /tmp/pip-modern-metadata-r41idqi6/aoptk.egg-info/PKG-INFO 2026-01-14T16:51:07,862 writing dependency_links to /tmp/pip-modern-metadata-r41idqi6/aoptk.egg-info/dependency_links.txt 2026-01-14T16:51:07,864 writing entry points to /tmp/pip-modern-metadata-r41idqi6/aoptk.egg-info/entry_points.txt 2026-01-14T16:51:07,866 writing requirements to /tmp/pip-modern-metadata-r41idqi6/aoptk.egg-info/requires.txt 2026-01-14T16:51:07,867 writing top-level names to /tmp/pip-modern-metadata-r41idqi6/aoptk.egg-info/top_level.txt 2026-01-14T16:51:07,868 writing manifest file '/tmp/pip-modern-metadata-r41idqi6/aoptk.egg-info/SOURCES.txt' 2026-01-14T16:51:07,921 listing git files failed - pretending there aren't any 2026-01-14T16:51:07,927 reading manifest file '/tmp/pip-modern-metadata-r41idqi6/aoptk.egg-info/SOURCES.txt' 2026-01-14T16:51:07,929 reading manifest template 'MANIFEST.in' 2026-01-14T16:51:07,930 warning: no files found matching 'NOTICE' 2026-01-14T16:51:07,931 adding license file 'LICENSE' 2026-01-14T16:51:07,936 writing manifest file '/tmp/pip-modern-metadata-r41idqi6/aoptk.egg-info/SOURCES.txt' 2026-01-14T16:51:07,937 creating '/tmp/pip-modern-metadata-r41idqi6/aoptk-0.1.1.dist-info' 2026-01-14T16:51:08,066 Preparing metadata (pyproject.toml): finished with status 'done' 2026-01-14T16:51:08,071 Source in /tmp/pip-wheel-medex024/aoptk_4770b3d4730c42b78ecfff383b10916e has version 0.1.1, which satisfies requirement aoptk==0.1.1 from https://files.pythonhosted.org/packages/21/59/05f875bd1dd4c4edac306e1e85fc6c589b2fa00f94693287fd2249007416/aoptk-0.1.1.tar.gz 2026-01-14T16:51:08,072 Removed aoptk==0.1.1 from https://files.pythonhosted.org/packages/21/59/05f875bd1dd4c4edac306e1e85fc6c589b2fa00f94693287fd2249007416/aoptk-0.1.1.tar.gz from build tracker '/tmp/pip-build-tracker-bjjn9mca' 2026-01-14T16:51:08,078 Created temporary directory: /tmp/pip-unpack-7la8wtax 2026-01-14T16:51:08,079 Building wheels for collected packages: aoptk 2026-01-14T16:51:08,083 Created temporary directory: /tmp/pip-wheel-womprjkv 2026-01-14T16:51:08,084 Destination directory: /tmp/pip-wheel-womprjkv 2026-01-14T16:51:08,086 Building wheel for aoptk (pyproject.toml): started 2026-01-14T16:51:08,087 Running command Building wheel for aoptk (pyproject.toml) 2026-01-14T16:51:08,652 toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section 2026-01-14T16:51:08,686 /tmp/pip-build-env-4po7zzan/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-01-14T16:51:08,686 !! 2026-01-14T16:51:08,687 ******************************************************************************** 2026-01-14T16:51:08,688 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-01-14T16:51:08,689 By 2026-Feb-18, you need to update your project and remove deprecated calls 2026-01-14T16:51:08,689 or your builds will no longer be supported. 2026-01-14T16:51:08,690 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-01-14T16:51:08,691 ******************************************************************************** 2026-01-14T16:51:08,692 !! 2026-01-14T16:51:08,692 corresp(dist, value, root_dir) 2026-01-14T16:51:08,774 running bdist_wheel 2026-01-14T16:51:08,801 running build 2026-01-14T16:51:08,801 running build_py 2026-01-14T16:51:08,809 creating build/lib/aoptk 2026-01-14T16:51:08,812 copying src/aoptk/chemical.py -> build/lib/aoptk 2026-01-14T16:51:08,814 copying src/aoptk/sentence_generator.py -> build/lib/aoptk 2026-01-14T16:51:08,816 copying src/aoptk/effect.py -> build/lib/aoptk 2026-01-14T16:51:08,818 copying src/aoptk/__init__.py -> build/lib/aoptk 2026-01-14T16:51:08,820 copying src/aoptk/spacy_processor.py -> build/lib/aoptk 2026-01-14T16:51:08,822 copying src/aoptk/regex_sentence_generator.py -> build/lib/aoptk 2026-01-14T16:51:08,824 copying src/aoptk/find_chemical.py -> build/lib/aoptk 2026-01-14T16:51:08,826 copying src/aoptk/sentence.py -> build/lib/aoptk 2026-01-14T16:51:08,828 creating build/lib/aoptk/normalization 2026-01-14T16:51:08,829 copying src/aoptk/normalization/pubchem_abbreviation_short.py -> build/lib/aoptk/normalization 2026-01-14T16:51:08,831 copying src/aoptk/normalization/provide_normalization_dataframe.py -> build/lib/aoptk/normalization 2026-01-14T16:51:08,833 copying src/aoptk/normalization/__init__.py -> build/lib/aoptk/normalization 2026-01-14T16:51:08,834 copying src/aoptk/normalization/pubchem_abbreviation_uppercase.py -> build/lib/aoptk/normalization 2026-01-14T16:51:08,836 copying src/aoptk/normalization/pubchem_local.py -> build/lib/aoptk/normalization 2026-01-14T16:51:08,838 copying src/aoptk/normalization/mesh_terms.py -> build/lib/aoptk/normalization 2026-01-14T16:51:08,840 copying src/aoptk/normalization/pubchem_api.py -> build/lib/aoptk/normalization 2026-01-14T16:51:08,842 copying src/aoptk/normalization/normalize_chemical.py -> build/lib/aoptk/normalization 2026-01-14T16:51:08,844 copying src/aoptk/normalization/provide_mesh_term_dataframe_from_xml.py -> build/lib/aoptk/normalization 2026-01-14T16:51:08,846 creating build/lib/aoptk/application 2026-01-14T16:51:08,847 copying src/aoptk/application/__init__.py -> build/lib/aoptk/application 2026-01-14T16:51:08,849 copying src/aoptk/application/publication_tracker.py -> build/lib/aoptk/application 2026-01-14T16:51:08,851 copying src/aoptk/application/chemical_identifier.py -> build/lib/aoptk/application 2026-01-14T16:51:08,854 creating build/lib/aoptk/abbreviations 2026-01-14T16:51:08,855 copying src/aoptk/abbreviations/abbreviation_translator_dictionary_generator.py -> build/lib/aoptk/abbreviations 2026-01-14T16:51:08,857 copying src/aoptk/abbreviations/__init__.py -> build/lib/aoptk/abbreviations 2026-01-14T16:51:08,858 copying src/aoptk/abbreviations/abbreviation_translator.py -> build/lib/aoptk/abbreviations 2026-01-14T16:51:08,860 copying src/aoptk/abbreviations/abbreviation_translator_dictionary.py -> build/lib/aoptk/abbreviations 2026-01-14T16:51:08,863 creating build/lib/aoptk/cleaning 2026-01-14T16:51:08,864 copying src/aoptk/cleaning/text_cleaner.py -> build/lib/aoptk/cleaning 2026-01-14T16:51:08,866 copying src/aoptk/cleaning/__init__.py -> build/lib/aoptk/cleaning 2026-01-14T16:51:08,867 copying src/aoptk/cleaning/html_tag_remover.py -> build/lib/aoptk/cleaning 2026-01-14T16:51:08,871 creating build/lib/aoptk/relationships 2026-01-14T16:51:08,872 copying src/aoptk/relationships/find_relationship.py -> build/lib/aoptk/relationships 2026-01-14T16:51:08,874 copying src/aoptk/relationships/__init__.py -> build/lib/aoptk/relationships 2026-01-14T16:51:08,876 copying src/aoptk/relationships/relationship.py -> build/lib/aoptk/relationships 2026-01-14T16:51:08,878 copying src/aoptk/relationships/zero_shot_classification_single.py -> build/lib/aoptk/relationships 2026-01-14T16:51:08,880 copying src/aoptk/relationships/zero_shot_classification_multiple.py -> build/lib/aoptk/relationships 2026-01-14T16:51:08,882 copying src/aoptk/relationships/zero_shot_classification.py -> build/lib/aoptk/relationships 2026-01-14T16:51:08,884 creating build/lib/aoptk/literature 2026-01-14T16:51:08,885 copying src/aoptk/literature/get_publication.py -> build/lib/aoptk/literature 2026-01-14T16:51:08,887 copying src/aoptk/literature/abbreviations.py -> build/lib/aoptk/literature 2026-01-14T16:51:08,889 copying src/aoptk/literature/pdf.py -> build/lib/aoptk/literature 2026-01-14T16:51:08,891 copying src/aoptk/literature/pdf_parser.py -> build/lib/aoptk/literature 2026-01-14T16:51:08,893 copying src/aoptk/literature/__init__.py -> build/lib/aoptk/literature 2026-01-14T16:51:08,894 copying src/aoptk/literature/get_pdf.py -> build/lib/aoptk/literature 2026-01-14T16:51:08,896 copying src/aoptk/literature/utils.py -> build/lib/aoptk/literature 2026-01-14T16:51:08,898 copying src/aoptk/literature/get_id.py -> build/lib/aoptk/literature 2026-01-14T16:51:08,900 copying src/aoptk/literature/id.py -> build/lib/aoptk/literature 2026-01-14T16:51:08,901 copying src/aoptk/literature/get_abstract.py -> build/lib/aoptk/literature 2026-01-14T16:51:08,903 copying src/aoptk/literature/publication_metadata.py -> build/lib/aoptk/literature 2026-01-14T16:51:08,905 copying src/aoptk/literature/abstract.py -> build/lib/aoptk/literature 2026-01-14T16:51:08,907 copying src/aoptk/literature/pymupdf_parser.py -> build/lib/aoptk/literature 2026-01-14T16:51:08,909 copying src/aoptk/literature/publication.py -> build/lib/aoptk/literature 2026-01-14T16:51:08,912 creating build/lib/aoptk/literature/databases 2026-01-14T16:51:08,913 copying src/aoptk/literature/databases/__init__.py -> build/lib/aoptk/literature/databases 2026-01-14T16:51:08,914 copying src/aoptk/literature/databases/pubmed.py -> build/lib/aoptk/literature/databases 2026-01-14T16:51:08,917 copying src/aoptk/literature/databases/europepmc.py -> build/lib/aoptk/literature/databases 2026-01-14T16:51:08,919 running egg_info 2026-01-14T16:51:08,932 writing src/aoptk.egg-info/PKG-INFO 2026-01-14T16:51:08,937 writing dependency_links to src/aoptk.egg-info/dependency_links.txt 2026-01-14T16:51:08,938 writing entry points to src/aoptk.egg-info/entry_points.txt 2026-01-14T16:51:08,940 writing requirements to src/aoptk.egg-info/requires.txt 2026-01-14T16:51:08,941 writing top-level names to src/aoptk.egg-info/top_level.txt 2026-01-14T16:51:08,981 listing git files failed - pretending there aren't any 2026-01-14T16:51:08,987 reading manifest file 'src/aoptk.egg-info/SOURCES.txt' 2026-01-14T16:51:08,994 reading manifest template 'MANIFEST.in' 2026-01-14T16:51:08,995 warning: no files found matching 'NOTICE' 2026-01-14T16:51:08,996 adding license file 'LICENSE' 2026-01-14T16:51:09,002 writing manifest file 'src/aoptk.egg-info/SOURCES.txt' 2026-01-14T16:51:09,025 installing to build/bdist.linux-armv7l/wheel 2026-01-14T16:51:09,025 running install 2026-01-14T16:51:09,049 running install_lib 2026-01-14T16:51:09,057 creating build/bdist.linux-armv7l/wheel 2026-01-14T16:51:09,059 creating build/bdist.linux-armv7l/wheel/aoptk 2026-01-14T16:51:09,060 creating build/bdist.linux-armv7l/wheel/aoptk/normalization 2026-01-14T16:51:09,061 copying build/lib/aoptk/normalization/pubchem_abbreviation_short.py -> build/bdist.linux-armv7l/wheel/./aoptk/normalization 2026-01-14T16:51:09,063 copying build/lib/aoptk/normalization/provide_normalization_dataframe.py -> build/bdist.linux-armv7l/wheel/./aoptk/normalization 2026-01-14T16:51:09,065 copying build/lib/aoptk/normalization/__init__.py -> build/bdist.linux-armv7l/wheel/./aoptk/normalization 2026-01-14T16:51:09,066 copying build/lib/aoptk/normalization/pubchem_abbreviation_uppercase.py -> build/bdist.linux-armv7l/wheel/./aoptk/normalization 2026-01-14T16:51:09,068 copying build/lib/aoptk/normalization/pubchem_local.py -> build/bdist.linux-armv7l/wheel/./aoptk/normalization 2026-01-14T16:51:09,070 copying build/lib/aoptk/normalization/mesh_terms.py -> build/bdist.linux-armv7l/wheel/./aoptk/normalization 2026-01-14T16:51:09,071 copying build/lib/aoptk/normalization/pubchem_api.py -> build/bdist.linux-armv7l/wheel/./aoptk/normalization 2026-01-14T16:51:09,073 copying build/lib/aoptk/normalization/normalize_chemical.py -> build/bdist.linux-armv7l/wheel/./aoptk/normalization 2026-01-14T16:51:09,075 copying build/lib/aoptk/normalization/provide_mesh_term_dataframe_from_xml.py -> build/bdist.linux-armv7l/wheel/./aoptk/normalization 2026-01-14T16:51:09,077 copying build/lib/aoptk/chemical.py -> build/bdist.linux-armv7l/wheel/./aoptk 2026-01-14T16:51:09,079 copying build/lib/aoptk/sentence_generator.py -> build/bdist.linux-armv7l/wheel/./aoptk 2026-01-14T16:51:09,081 creating build/bdist.linux-armv7l/wheel/aoptk/application 2026-01-14T16:51:09,082 copying build/lib/aoptk/application/__init__.py -> build/bdist.linux-armv7l/wheel/./aoptk/application 2026-01-14T16:51:09,083 copying build/lib/aoptk/application/publication_tracker.py -> build/bdist.linux-armv7l/wheel/./aoptk/application 2026-01-14T16:51:09,086 copying build/lib/aoptk/application/chemical_identifier.py -> build/bdist.linux-armv7l/wheel/./aoptk/application 2026-01-14T16:51:09,088 copying build/lib/aoptk/effect.py -> build/bdist.linux-armv7l/wheel/./aoptk 2026-01-14T16:51:09,090 copying build/lib/aoptk/__init__.py -> build/bdist.linux-armv7l/wheel/./aoptk 2026-01-14T16:51:09,092 creating build/bdist.linux-armv7l/wheel/aoptk/abbreviations 2026-01-14T16:51:09,093 copying build/lib/aoptk/abbreviations/abbreviation_translator_dictionary_generator.py -> build/bdist.linux-armv7l/wheel/./aoptk/abbreviations 2026-01-14T16:51:09,095 copying build/lib/aoptk/abbreviations/__init__.py -> build/bdist.linux-armv7l/wheel/./aoptk/abbreviations 2026-01-14T16:51:09,097 copying build/lib/aoptk/abbreviations/abbreviation_translator.py -> build/bdist.linux-armv7l/wheel/./aoptk/abbreviations 2026-01-14T16:51:09,098 copying build/lib/aoptk/abbreviations/abbreviation_translator_dictionary.py -> build/bdist.linux-armv7l/wheel/./aoptk/abbreviations 2026-01-14T16:51:09,100 copying build/lib/aoptk/spacy_processor.py -> build/bdist.linux-armv7l/wheel/./aoptk 2026-01-14T16:51:09,102 copying build/lib/aoptk/regex_sentence_generator.py -> build/bdist.linux-armv7l/wheel/./aoptk 2026-01-14T16:51:09,105 creating build/bdist.linux-armv7l/wheel/aoptk/cleaning 2026-01-14T16:51:09,106 copying build/lib/aoptk/cleaning/text_cleaner.py -> build/bdist.linux-armv7l/wheel/./aoptk/cleaning 2026-01-14T16:51:09,107 copying build/lib/aoptk/cleaning/__init__.py -> build/bdist.linux-armv7l/wheel/./aoptk/cleaning 2026-01-14T16:51:09,109 copying build/lib/aoptk/cleaning/html_tag_remover.py -> build/bdist.linux-armv7l/wheel/./aoptk/cleaning 2026-01-14T16:51:09,111 creating build/bdist.linux-armv7l/wheel/aoptk/relationships 2026-01-14T16:51:09,112 copying build/lib/aoptk/relationships/find_relationship.py -> build/bdist.linux-armv7l/wheel/./aoptk/relationships 2026-01-14T16:51:09,114 copying build/lib/aoptk/relationships/__init__.py -> build/bdist.linux-armv7l/wheel/./aoptk/relationships 2026-01-14T16:51:09,116 copying build/lib/aoptk/relationships/relationship.py -> build/bdist.linux-armv7l/wheel/./aoptk/relationships 2026-01-14T16:51:09,118 copying build/lib/aoptk/relationships/zero_shot_classification_single.py -> build/bdist.linux-armv7l/wheel/./aoptk/relationships 2026-01-14T16:51:09,120 copying build/lib/aoptk/relationships/zero_shot_classification_multiple.py -> build/bdist.linux-armv7l/wheel/./aoptk/relationships 2026-01-14T16:51:09,121 copying build/lib/aoptk/relationships/zero_shot_classification.py -> build/bdist.linux-armv7l/wheel/./aoptk/relationships 2026-01-14T16:51:09,123 copying build/lib/aoptk/find_chemical.py -> build/bdist.linux-armv7l/wheel/./aoptk 2026-01-14T16:51:09,125 creating build/bdist.linux-armv7l/wheel/aoptk/literature 2026-01-14T16:51:09,126 copying build/lib/aoptk/literature/get_publication.py -> build/bdist.linux-armv7l/wheel/./aoptk/literature 2026-01-14T16:51:09,128 copying build/lib/aoptk/literature/abbreviations.py -> build/bdist.linux-armv7l/wheel/./aoptk/literature 2026-01-14T16:51:09,130 copying build/lib/aoptk/literature/pdf.py -> build/bdist.linux-armv7l/wheel/./aoptk/literature 2026-01-14T16:51:09,131 copying build/lib/aoptk/literature/pdf_parser.py -> build/bdist.linux-armv7l/wheel/./aoptk/literature 2026-01-14T16:51:09,133 copying build/lib/aoptk/literature/__init__.py -> build/bdist.linux-armv7l/wheel/./aoptk/literature 2026-01-14T16:51:09,134 copying build/lib/aoptk/literature/get_pdf.py -> build/bdist.linux-armv7l/wheel/./aoptk/literature 2026-01-14T16:51:09,136 copying build/lib/aoptk/literature/utils.py -> build/bdist.linux-armv7l/wheel/./aoptk/literature 2026-01-14T16:51:09,138 copying build/lib/aoptk/literature/get_id.py -> build/bdist.linux-armv7l/wheel/./aoptk/literature 2026-01-14T16:51:09,139 copying build/lib/aoptk/literature/id.py -> build/bdist.linux-armv7l/wheel/./aoptk/literature 2026-01-14T16:51:09,141 copying build/lib/aoptk/literature/get_abstract.py -> build/bdist.linux-armv7l/wheel/./aoptk/literature 2026-01-14T16:51:09,143 copying build/lib/aoptk/literature/publication_metadata.py -> build/bdist.linux-armv7l/wheel/./aoptk/literature 2026-01-14T16:51:09,145 copying build/lib/aoptk/literature/abstract.py -> build/bdist.linux-armv7l/wheel/./aoptk/literature 2026-01-14T16:51:09,147 creating build/bdist.linux-armv7l/wheel/aoptk/literature/databases 2026-01-14T16:51:09,148 copying build/lib/aoptk/literature/databases/__init__.py -> build/bdist.linux-armv7l/wheel/./aoptk/literature/databases 2026-01-14T16:51:09,149 copying build/lib/aoptk/literature/databases/pubmed.py -> build/bdist.linux-armv7l/wheel/./aoptk/literature/databases 2026-01-14T16:51:09,151 copying build/lib/aoptk/literature/databases/europepmc.py -> build/bdist.linux-armv7l/wheel/./aoptk/literature/databases 2026-01-14T16:51:09,154 copying build/lib/aoptk/literature/pymupdf_parser.py -> build/bdist.linux-armv7l/wheel/./aoptk/literature 2026-01-14T16:51:09,156 copying build/lib/aoptk/literature/publication.py -> build/bdist.linux-armv7l/wheel/./aoptk/literature 2026-01-14T16:51:09,158 copying build/lib/aoptk/sentence.py -> build/bdist.linux-armv7l/wheel/./aoptk 2026-01-14T16:51:09,159 running install_egg_info 2026-01-14T16:51:09,166 Copying src/aoptk.egg-info to build/bdist.linux-armv7l/wheel/./aoptk-0.1.1-py3.11.egg-info 2026-01-14T16:51:09,178 running install_scripts 2026-01-14T16:51:09,189 creating build/bdist.linux-armv7l/wheel/aoptk-0.1.1.dist-info/WHEEL 2026-01-14T16:51:09,192 creating '/tmp/pip-wheel-womprjkv/.tmp-f5pg5ezp/aoptk-0.1.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-01-14T16:51:09,194 adding 'aoptk/__init__.py' 2026-01-14T16:51:09,196 adding 'aoptk/chemical.py' 2026-01-14T16:51:09,198 adding 'aoptk/effect.py' 2026-01-14T16:51:09,199 adding 'aoptk/find_chemical.py' 2026-01-14T16:51:09,200 adding 'aoptk/regex_sentence_generator.py' 2026-01-14T16:51:09,202 adding 'aoptk/sentence.py' 2026-01-14T16:51:09,203 adding 'aoptk/sentence_generator.py' 2026-01-14T16:51:09,204 adding 'aoptk/spacy_processor.py' 2026-01-14T16:51:09,206 adding 'aoptk/abbreviations/__init__.py' 2026-01-14T16:51:09,207 adding 'aoptk/abbreviations/abbreviation_translator.py' 2026-01-14T16:51:09,208 adding 'aoptk/abbreviations/abbreviation_translator_dictionary.py' 2026-01-14T16:51:09,210 adding 'aoptk/abbreviations/abbreviation_translator_dictionary_generator.py' 2026-01-14T16:51:09,211 adding 'aoptk/application/__init__.py' 2026-01-14T16:51:09,213 adding 'aoptk/application/chemical_identifier.py' 2026-01-14T16:51:09,214 adding 'aoptk/application/publication_tracker.py' 2026-01-14T16:51:09,216 adding 'aoptk/cleaning/__init__.py' 2026-01-14T16:51:09,217 adding 'aoptk/cleaning/html_tag_remover.py' 2026-01-14T16:51:09,218 adding 'aoptk/cleaning/text_cleaner.py' 2026-01-14T16:51:09,220 adding 'aoptk/literature/__init__.py' 2026-01-14T16:51:09,221 adding 'aoptk/literature/abbreviations.py' 2026-01-14T16:51:09,222 adding 'aoptk/literature/abstract.py' 2026-01-14T16:51:09,223 adding 'aoptk/literature/get_abstract.py' 2026-01-14T16:51:09,224 adding 'aoptk/literature/get_id.py' 2026-01-14T16:51:09,225 adding 'aoptk/literature/get_pdf.py' 2026-01-14T16:51:09,226 adding 'aoptk/literature/get_publication.py' 2026-01-14T16:51:09,228 adding 'aoptk/literature/id.py' 2026-01-14T16:51:09,229 adding 'aoptk/literature/pdf.py' 2026-01-14T16:51:09,230 adding 'aoptk/literature/pdf_parser.py' 2026-01-14T16:51:09,231 adding 'aoptk/literature/publication.py' 2026-01-14T16:51:09,232 adding 'aoptk/literature/publication_metadata.py' 2026-01-14T16:51:09,234 adding 'aoptk/literature/pymupdf_parser.py' 2026-01-14T16:51:09,235 adding 'aoptk/literature/utils.py' 2026-01-14T16:51:09,237 adding 'aoptk/literature/databases/__init__.py' 2026-01-14T16:51:09,238 adding 'aoptk/literature/databases/europepmc.py' 2026-01-14T16:51:09,240 adding 'aoptk/literature/databases/pubmed.py' 2026-01-14T16:51:09,241 adding 'aoptk/normalization/__init__.py' 2026-01-14T16:51:09,243 adding 'aoptk/normalization/mesh_terms.py' 2026-01-14T16:51:09,244 adding 'aoptk/normalization/normalize_chemical.py' 2026-01-14T16:51:09,245 adding 'aoptk/normalization/provide_mesh_term_dataframe_from_xml.py' 2026-01-14T16:51:09,246 adding 'aoptk/normalization/provide_normalization_dataframe.py' 2026-01-14T16:51:09,247 adding 'aoptk/normalization/pubchem_abbreviation_short.py' 2026-01-14T16:51:09,249 adding 'aoptk/normalization/pubchem_abbreviation_uppercase.py' 2026-01-14T16:51:09,250 adding 'aoptk/normalization/pubchem_api.py' 2026-01-14T16:51:09,251 adding 'aoptk/normalization/pubchem_local.py' 2026-01-14T16:51:09,253 adding 'aoptk/relationships/__init__.py' 2026-01-14T16:51:09,254 adding 'aoptk/relationships/find_relationship.py' 2026-01-14T16:51:09,255 adding 'aoptk/relationships/relationship.py' 2026-01-14T16:51:09,257 adding 'aoptk/relationships/zero_shot_classification.py' 2026-01-14T16:51:09,258 adding 'aoptk/relationships/zero_shot_classification_multiple.py' 2026-01-14T16:51:09,259 adding 'aoptk/relationships/zero_shot_classification_single.py' 2026-01-14T16:51:09,262 adding 'aoptk-0.1.1.dist-info/licenses/LICENSE' 2026-01-14T16:51:09,263 adding 'aoptk-0.1.1.dist-info/METADATA' 2026-01-14T16:51:09,264 adding 'aoptk-0.1.1.dist-info/WHEEL' 2026-01-14T16:51:09,265 adding 'aoptk-0.1.1.dist-info/entry_points.txt' 2026-01-14T16:51:09,266 adding 'aoptk-0.1.1.dist-info/top_level.txt' 2026-01-14T16:51:09,267 adding 'aoptk-0.1.1.dist-info/RECORD' 2026-01-14T16:51:09,269 removing build/bdist.linux-armv7l/wheel 2026-01-14T16:51:09,385 Building wheel for aoptk (pyproject.toml): finished with status 'done' 2026-01-14T16:51:09,390 Created wheel for aoptk: filename=aoptk-0.1.1-py3-none-any.whl size=37528 sha256=7985d9a26e118e074b99d4d1e744a5096f4fb94be10bf74b56cf5b6aa116705a 2026-01-14T16:51:09,392 Stored in directory: /tmp/pip-ephem-wheel-cache-njhf0w4a/wheels/d1/2c/0b/8d717737d8c02eb711796ad4e2d64cbdd8ac81eb6603c3302b 2026-01-14T16:51:09,404 Successfully built aoptk 2026-01-14T16:51:09,409 Removed build tracker: '/tmp/pip-build-tracker-bjjn9mca'