2026-01-15T00:48:18,518 Created temporary directory: /tmp/pip-ephem-wheel-cache-pfa4686v 2026-01-15T00:48:18,520 Created temporary directory: /tmp/pip-build-tracker-1m2hseog 2026-01-15T00:48:18,521 Initialized build tracking at /tmp/pip-build-tracker-1m2hseog 2026-01-15T00:48:18,521 Created build tracker: /tmp/pip-build-tracker-1m2hseog 2026-01-15T00:48:18,522 Entered build tracker: /tmp/pip-build-tracker-1m2hseog 2026-01-15T00:48:18,522 Created temporary directory: /tmp/pip-wheel-3vlnwnq6 2026-01-15T00:48:18,526 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-01-15T00:48:18,528 Created temporary directory: /tmp/pip-ephem-wheel-cache-hz__0b91 2026-01-15T00:48:18,551 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-01-15T00:48:18,554 2 location(s) to search for versions of clearmap-nmr: 2026-01-15T00:48:18,554 * https://pypi.org/simple/clearmap-nmr/ 2026-01-15T00:48:18,554 * https://www.piwheels.org/simple/clearmap-nmr/ 2026-01-15T00:48:18,555 Fetching project page and analyzing links: https://pypi.org/simple/clearmap-nmr/ 2026-01-15T00:48:18,556 Getting page https://pypi.org/simple/clearmap-nmr/ 2026-01-15T00:48:18,557 Found index url https://pypi.org/simple 2026-01-15T00:48:18,776 Fetched page https://pypi.org/simple/clearmap-nmr/ as application/vnd.pypi.simple.v1+json 2026-01-15T00:48:18,777 Skipping link: No binaries permitted for clearmap-nmr: https://files.pythonhosted.org/packages/48/d5/07df291089cb7491390ff95e76db30649dbb1d0f8c3c28067770430e42a0/clearmap_nmr-0.2.0-cp310-cp310-manylinux_2_39_x86_64.whl (from https://pypi.org/simple/clearmap-nmr/) (requires-python:>=3.8) 2026-01-15T00:48:18,778 Found link https://files.pythonhosted.org/packages/5e/41/d46423b69c6f3c7101cc624c0d72875cb87d91777271ad3ca34aef7be05e/clearmap_nmr-0.2.0.tar.gz (from https://pypi.org/simple/clearmap-nmr/) (requires-python:>=3.8), version: 0.2.0 2026-01-15T00:48:18,779 Fetching project page and analyzing links: https://www.piwheels.org/simple/clearmap-nmr/ 2026-01-15T00:48:18,780 Getting page https://www.piwheels.org/simple/clearmap-nmr/ 2026-01-15T00:48:18,782 Found index url https://www.piwheels.org/simple 2026-01-15T00:48:18,944 Fetched page https://www.piwheels.org/simple/clearmap-nmr/ as text/html 2026-01-15T00:48:18,945 Skipping link: not a file: https://www.piwheels.org/simple/clearmap-nmr/ 2026-01-15T00:48:18,946 Skipping link: not a file: https://pypi.org/simple/clearmap-nmr/ 2026-01-15T00:48:18,965 Given no hashes to check 1 links for project 'clearmap-nmr': discarding no candidates 2026-01-15T00:48:18,983 Collecting clearmap-nmr==0.2.0 2026-01-15T00:48:18,985 Created temporary directory: /tmp/pip-unpack-nk912awx 2026-01-15T00:48:19,123 Downloading clearmap_nmr-0.2.0.tar.gz (563 kB) 2026-01-15T00:48:19,928 Added clearmap-nmr==0.2.0 from https://files.pythonhosted.org/packages/5e/41/d46423b69c6f3c7101cc624c0d72875cb87d91777271ad3ca34aef7be05e/clearmap_nmr-0.2.0.tar.gz to build tracker '/tmp/pip-build-tracker-1m2hseog' 2026-01-15T00:48:19,941 Created temporary directory: /tmp/pip-build-env-j_4fvn0w 2026-01-15T00:48:19,947 Installing build dependencies: started 2026-01-15T00:48:19,950 Running command pip subprocess to install build dependencies 2026-01-15T00:48:21,175 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-01-15T00:48:21,861 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-01-15T00:48:21,887 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-01-15T00:48:23,649 Collecting setuptools<77.0,>=61.0 2026-01-15T00:48:23,744 Using cached https://www.piwheels.org/simple/setuptools/setuptools-76.1.0-py3-none-any.whl (1.2 MB) 2026-01-15T00:48:25,826 Collecting Cython<3.0,>=0.29 2026-01-15T00:48:25,842 Downloading https://www.piwheels.org/simple/cython/Cython-0.29.37-cp311-cp311-linux_armv7l.whl (5.0 MB) 2026-01-15T00:48:26,199 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 5.0/5.0 MB 14.3 MB/s eta 0:00:00 2026-01-15T00:48:27,341 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-01-15T00:48:27,349 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-01-15T00:48:27,356 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-01-15T00:48:27,363 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-01-15T00:48:27,371 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-01-15T00:48:28,059 Collecting numpy>=1.19 2026-01-15T00:48:28,447 Using cached https://www.piwheels.org/simple/numpy/numpy-2.4.1-cp311-cp311-linux_armv7l.whl (6.3 MB) 2026-01-15T00:48:28,852 Collecting wheel 2026-01-15T00:48:28,870 Using cached https://www.piwheels.org/simple/wheel/wheel-0.45.1-py3-none-any.whl (72 kB) 2026-01-15T00:48:31,958 Installing collected packages: wheel, setuptools, numpy, Cython 2026-01-15T00:48:32,194 Creating /tmp/pip-build-env-j_4fvn0w/overlay/local/bin 2026-01-15T00:48:32,196 changing mode of /tmp/pip-build-env-j_4fvn0w/overlay/local/bin/wheel to 755 2026-01-15T00:48:44,843 changing mode of /tmp/pip-build-env-j_4fvn0w/overlay/local/bin/f2py to 755 2026-01-15T00:48:44,845 changing mode of /tmp/pip-build-env-j_4fvn0w/overlay/local/bin/numpy-config to 755 2026-01-15T00:48:47,686 changing mode of /tmp/pip-build-env-j_4fvn0w/overlay/local/bin/cygdb to 755 2026-01-15T00:48:47,689 changing mode of /tmp/pip-build-env-j_4fvn0w/overlay/local/bin/cython to 755 2026-01-15T00:48:47,691 changing mode of /tmp/pip-build-env-j_4fvn0w/overlay/local/bin/cythonize to 755 2026-01-15T00:48:47,727 Successfully installed Cython-0.29.37 numpy-2.4.1 setuptools-76.1.0 wheel-0.45.1 2026-01-15T00:48:48,202 Installing build dependencies: finished with status 'done' 2026-01-15T00:48:48,210 Getting requirements to build wheel: started 2026-01-15T00:48:48,211 Running command Getting requirements to build wheel 2026-01-15T00:48:49,815 Compiling ClearMap/ImageProcessing/Binary/FillingCode.pyx because it changed. 2026-01-15T00:48:49,816 Compiling ClearMap/ImageProcessing/Clipping/ClippingCode.pyx because it changed. 2026-01-15T00:48:49,817 Compiling ClearMap/ImageProcessing/Differentiation/HessianCode.pyx because it changed. 2026-01-15T00:48:49,817 Compiling ClearMap/ImageProcessing/Filter/Rank/RankCode.pyx because it changed. 2026-01-15T00:48:49,818 Compiling ClearMap/ImageProcessing/Filter/Rank/PercentileCode.pyx because it changed. 2026-01-15T00:48:49,819 Compiling ClearMap/ImageProcessing/Filter/Rank/BilateralCode.pyx because it changed. 2026-01-15T00:48:49,820 Compiling ClearMap/ImageProcessing/Filter/Rank/ParametricCode.pyx because it changed. 2026-01-15T00:48:49,820 Compiling ClearMap/ImageProcessing/Thresholding/ThresholdingCode.pyx because it changed. 2026-01-15T00:48:49,821 Compiling ClearMap/ImageProcessing/Tracing/TraceCode.pyx because it changed. 2026-01-15T00:48:49,821 Compiling ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.pyx because it changed. 2026-01-15T00:48:49,822 Compiling ClearMap/ParallelProcessing/DataProcessing/ConvolvePointListCode.pyx because it changed. 2026-01-15T00:48:49,823 Compiling ClearMap/ParallelProcessing/DataProcessing/DevolvePointListCode.pyx because it changed. 2026-01-15T00:48:49,823 Compiling ClearMap/ParallelProcessing/DataProcessing/MeasurePointListCode.pyx because it changed. 2026-01-15T00:48:49,824 Compiling ClearMap/ParallelProcessing/DataProcessing/StatisticsPointListCode.pyx because it changed. 2026-01-15T00:52:50,603 [ 3/14] Cythonizing ClearMap/ImageProcessing/Differentiation/HessianCode.pyx 2026-01-15T00:52:50,620 [ 7/14] Cythonizing ClearMap/ImageProcessing/Filter/Rank/RankCode.pyx 2026-01-15T00:52:50,622 [14/14] Cythonizing ClearMap/ParallelProcessing/DataProcessing/StatisticsPointListCode.pyx 2026-01-15T00:52:50,623 [ 2/14] Cythonizing ClearMap/ImageProcessing/Clipping/ClippingCode.pyx 2026-01-15T00:52:50,624 [ 6/14] Cythonizing ClearMap/ImageProcessing/Filter/Rank/PercentileCode.pyx 2026-01-15T00:52:50,625 [12/14] Cythonizing ClearMap/ParallelProcessing/DataProcessing/DevolvePointListCode.pyx 2026-01-15T00:52:50,627 [ 1/14] Cythonizing ClearMap/ImageProcessing/Binary/FillingCode.pyx 2026-01-15T00:52:50,629 [ 5/14] Cythonizing ClearMap/ImageProcessing/Filter/Rank/ParametricCode.pyx 2026-01-15T00:52:50,630 [ 9/14] Cythonizing ClearMap/ImageProcessing/Tracing/TraceCode.pyx 2026-01-15T00:52:50,632 [10/14] Cythonizing ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.pyx 2026-01-15T00:52:50,633 [13/14] Cythonizing ClearMap/ParallelProcessing/DataProcessing/MeasurePointListCode.pyx 2026-01-15T00:52:50,633 [ 4/14] Cythonizing ClearMap/ImageProcessing/Filter/Rank/BilateralCode.pyx 2026-01-15T00:52:50,635 [ 8/14] Cythonizing ClearMap/ImageProcessing/Thresholding/ThresholdingCode.pyx 2026-01-15T00:52:50,636 [11/14] Cythonizing ClearMap/ParallelProcessing/DataProcessing/ConvolvePointListCode.pyx 2026-01-15T00:52:51,006 running egg_info 2026-01-15T00:52:51,014 writing clearmap_nmr.egg-info/PKG-INFO 2026-01-15T00:52:51,020 writing dependency_links to clearmap_nmr.egg-info/dependency_links.txt 2026-01-15T00:52:51,022 writing requirements to clearmap_nmr.egg-info/requires.txt 2026-01-15T00:52:51,023 writing top-level names to clearmap_nmr.egg-info/top_level.txt 2026-01-15T00:52:51,097 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:51,097 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:51,098 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:51,098 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:51,099 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:51,100 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:51,101 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:51,101 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:51,101 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:51,102 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:51,102 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:51,103 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:51,103 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:51,103 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:51,104 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:51,105 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:51,105 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:51,106 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:51,106 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:51,107 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:51,108 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:51,108 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:51,109 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:51,109 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:51,110 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:51,112 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:51,114 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:51,116 dependency 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won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:51,118 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:51,118 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:51,119 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:51,119 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:51,120 dependency 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2026-01-15T00:52:51,573 warning: no previously-included files matching '*.so' found anywhere in distribution 2026-01-15T00:52:51,575 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-01-15T00:52:51,576 adding license file 'LICENSE' 2026-01-15T00:52:51,577 adding license file 'LICENSE.txt' 2026-01-15T00:52:51,593 writing manifest file 'clearmap_nmr.egg-info/SOURCES.txt' 2026-01-15T00:52:51,807 Getting requirements to build wheel: finished with status 'done' 2026-01-15T00:52:51,811 Created temporary directory: /tmp/pip-modern-metadata-8x48ewcf 2026-01-15T00:52:51,813 Preparing metadata (pyproject.toml): started 2026-01-15T00:52:51,814 Running command Preparing metadata (pyproject.toml) 2026-01-15T00:52:53,528 running dist_info 2026-01-15T00:52:53,543 creating /tmp/pip-modern-metadata-8x48ewcf/clearmap_nmr.egg-info 2026-01-15T00:52:53,544 writing /tmp/pip-modern-metadata-8x48ewcf/clearmap_nmr.egg-info/PKG-INFO 2026-01-15T00:52:53,549 writing 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won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:53,637 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:53,637 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:53,638 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:53,638 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:53,639 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:53,639 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:53,640 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:53,640 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:53,641 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:53,641 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:53,641 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:53,642 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:53,642 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:53,643 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:53,643 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:53,644 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:53,644 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:53,645 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:53,645 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:53,646 reading manifest file '/tmp/pip-modern-metadata-8x48ewcf/clearmap_nmr.egg-info/SOURCES.txt' 2026-01-15T00:52:53,646 reading manifest template 'MANIFEST.in' 2026-01-15T00:52:54,086 warning: no previously-included files matching '*.so' found anywhere in distribution 2026-01-15T00:52:54,087 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-01-15T00:52:54,088 adding license file 'LICENSE' 2026-01-15T00:52:54,089 adding license file 'LICENSE.txt' 2026-01-15T00:52:54,101 writing manifest file '/tmp/pip-modern-metadata-8x48ewcf/clearmap_nmr.egg-info/SOURCES.txt' 2026-01-15T00:52:54,103 creating '/tmp/pip-modern-metadata-8x48ewcf/clearmap_nmr-0.2.0.dist-info' 2026-01-15T00:52:54,316 Preparing metadata (pyproject.toml): finished with status 'done' 2026-01-15T00:52:54,320 Source in /tmp/pip-wheel-3vlnwnq6/clearmap-nmr_0d221e9b85064e2fab7c1e2e7a7662f3 has version 0.2.0, which satisfies requirement clearmap-nmr==0.2.0 from https://files.pythonhosted.org/packages/5e/41/d46423b69c6f3c7101cc624c0d72875cb87d91777271ad3ca34aef7be05e/clearmap_nmr-0.2.0.tar.gz 2026-01-15T00:52:54,322 Removed clearmap-nmr==0.2.0 from https://files.pythonhosted.org/packages/5e/41/d46423b69c6f3c7101cc624c0d72875cb87d91777271ad3ca34aef7be05e/clearmap_nmr-0.2.0.tar.gz from build tracker '/tmp/pip-build-tracker-1m2hseog' 2026-01-15T00:52:54,327 Created temporary directory: /tmp/pip-unpack-0fxvfqsn 2026-01-15T00:52:54,328 Building wheels for collected packages: clearmap-nmr 2026-01-15T00:52:54,333 Created temporary directory: /tmp/pip-wheel-xrn440o3 2026-01-15T00:52:54,333 Destination directory: /tmp/pip-wheel-xrn440o3 2026-01-15T00:52:54,336 Building wheel for clearmap-nmr (pyproject.toml): started 2026-01-15T00:52:54,337 Running command Building wheel for clearmap-nmr (pyproject.toml) 2026-01-15T00:52:55,927 running bdist_wheel 2026-01-15T00:52:55,953 running build 2026-01-15T00:52:55,953 running build_py 2026-01-15T00:52:55,961 creating build/lib.linux-armv7l-cpython-311/ClearMap 2026-01-15T00:52:55,964 copying ClearMap/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap 2026-01-15T00:52:55,966 copying ClearMap/Environment.py -> build/lib.linux-armv7l-cpython-311/ClearMap 2026-01-15T00:52:55,968 copying ClearMap/Compile.py -> build/lib.linux-armv7l-cpython-311/ClearMap 2026-01-15T00:52:55,970 copying ClearMap/Settings.py -> build/lib.linux-armv7l-cpython-311/ClearMap 2026-01-15T00:52:55,973 creating build/lib.linux-armv7l-cpython-311/ClearMap/Alignment 2026-01-15T00:52:55,974 copying ClearMap/Alignment/Annotation.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Alignment 2026-01-15T00:52:55,977 copying ClearMap/Alignment/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Alignment 2026-01-15T00:52:55,979 copying ClearMap/Alignment/Elastix_GF.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Alignment 2026-01-15T00:52:55,982 copying ClearMap/Alignment/Elastix.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Alignment 2026-01-15T00:52:55,985 copying ClearMap/Alignment/Resampling.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Alignment 2026-01-15T00:52:55,988 creating build/lib.linux-armv7l-cpython-311/ClearMap/Alignment/Stitching 2026-01-15T00:52:55,989 copying ClearMap/Alignment/Stitching/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Alignment/Stitching 2026-01-15T00:52:55,991 copying ClearMap/Alignment/Stitching/StitchingWobbly.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Alignment/Stitching 2026-01-15T00:52:55,996 copying ClearMap/Alignment/Stitching/StitchingRigid.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Alignment/Stitching 2026-01-15T00:52:56,001 copying ClearMap/Alignment/Stitching/Tracking.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Alignment/Stitching 2026-01-15T00:52:56,004 creating build/lib.linux-armv7l-cpython-311/ClearMap/Analysis 2026-01-15T00:52:56,005 copying ClearMap/Analysis/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis 2026-01-15T00:52:56,008 copying ClearMap/Analysis/DimensionReduction.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis 2026-01-15T00:52:56,010 creating build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Curves 2026-01-15T00:52:56,011 copying ClearMap/Analysis/Curves/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Curves 2026-01-15T00:52:56,013 copying ClearMap/Analysis/Curves/Extrapolation.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Curves 2026-01-15T00:52:56,015 copying ClearMap/Analysis/Curves/Resampling.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Curves 2026-01-15T00:52:56,018 creating build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Graphs 2026-01-15T00:52:56,019 copying ClearMap/Analysis/Graphs/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Graphs 2026-01-15T00:52:56,021 copying ClearMap/Analysis/Graphs/GraphRendering.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Graphs 2026-01-15T00:52:56,024 copying ClearMap/Analysis/Graphs/GraphGt.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Graphs 2026-01-15T00:52:56,027 copying ClearMap/Analysis/Graphs/Graph.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Graphs 2026-01-15T00:52:56,030 copying ClearMap/Analysis/Graphs/GraphProcessing.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Graphs 2026-01-15T00:52:56,033 creating build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Measurements 2026-01-15T00:52:56,034 copying ClearMap/Analysis/Measurements/ShapeDetection.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Measurements 2026-01-15T00:52:56,037 copying ClearMap/Analysis/Measurements/Voxelization.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Measurements 2026-01-15T00:52:56,039 copying ClearMap/Analysis/Measurements/MaximaDetection.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Measurements 2026-01-15T00:52:56,041 copying ClearMap/Analysis/Measurements/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Measurements 2026-01-15T00:52:56,043 copying ClearMap/Analysis/Measurements/MeasureRadius.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Measurements 2026-01-15T00:52:56,046 copying ClearMap/Analysis/Measurements/MeasureExpression.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Measurements 2026-01-15T00:52:56,049 creating build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Statistics 2026-01-15T00:52:56,050 copying ClearMap/Analysis/Statistics/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Statistics 2026-01-15T00:52:56,052 copying ClearMap/Analysis/Statistics/GroupStatistics.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Statistics 2026-01-15T00:52:56,054 copying ClearMap/Analysis/Statistics/MultipleComparisonCorrection.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Statistics 2026-01-15T00:52:56,058 copying ClearMap/Analysis/Statistics/StatisticalTests.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Statistics 2026-01-15T00:52:56,060 creating build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing 2026-01-15T00:52:56,062 copying ClearMap/ImageProcessing/LightsheetCorrection.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing 2026-01-15T00:52:56,064 copying ClearMap/ImageProcessing/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing 2026-01-15T00:52:56,066 copying ClearMap/ImageProcessing/GreyReconstruction.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing 2026-01-15T00:52:56,069 copying ClearMap/ImageProcessing/LocalStatistics.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing 2026-01-15T00:52:56,071 copying ClearMap/ImageProcessing/IlluminationCorrection.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing 2026-01-15T00:52:56,075 creating build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Binary 2026-01-15T00:52:56,076 copying ClearMap/ImageProcessing/Binary/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Binary 2026-01-15T00:52:56,078 copying ClearMap/ImageProcessing/Binary/Smoothing.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Binary 2026-01-15T00:52:56,081 copying ClearMap/ImageProcessing/Binary/Filling.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Binary 2026-01-15T00:52:56,084 creating build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Clipping 2026-01-15T00:52:56,085 copying ClearMap/ImageProcessing/Clipping/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Clipping 2026-01-15T00:52:56,087 copying ClearMap/ImageProcessing/Clipping/Clipping.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Clipping 2026-01-15T00:52:56,090 creating build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Differentiation 2026-01-15T00:52:56,091 copying ClearMap/ImageProcessing/Differentiation/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Differentiation 2026-01-15T00:52:56,093 copying ClearMap/ImageProcessing/Differentiation/Gradient.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Differentiation 2026-01-15T00:52:56,095 copying ClearMap/ImageProcessing/Differentiation/Hessian.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Differentiation 2026-01-15T00:52:56,098 creating build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Experts 2026-01-15T00:52:56,099 copying ClearMap/ImageProcessing/Experts/Vasculature.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Experts 2026-01-15T00:52:56,102 copying ClearMap/ImageProcessing/Experts/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Experts 2026-01-15T00:52:56,104 copying ClearMap/ImageProcessing/Experts/Cells.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Experts 2026-01-15T00:52:56,107 creating build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter 2026-01-15T00:52:56,109 copying ClearMap/ImageProcessing/Filter/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter 2026-01-15T00:52:56,111 copying ClearMap/ImageProcessing/Filter/StructureElement.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter 2026-01-15T00:52:56,113 copying ClearMap/ImageProcessing/Filter/FilterKernel.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter 2026-01-15T00:52:56,116 creating build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank 2026-01-15T00:52:56,117 copying ClearMap/ImageProcessing/Filter/Rank/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank 2026-01-15T00:52:56,119 copying ClearMap/ImageProcessing/Filter/Rank/RankResample.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank 2026-01-15T00:52:56,121 copying ClearMap/ImageProcessing/Filter/Rank/Percentile.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank 2026-01-15T00:52:56,124 copying ClearMap/ImageProcessing/Filter/Rank/Parametric.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank 2026-01-15T00:52:56,126 copying ClearMap/ImageProcessing/Filter/Rank/Bilateral.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank 2026-01-15T00:52:56,129 copying ClearMap/ImageProcessing/Filter/Rank/Rank.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank 2026-01-15T00:52:56,132 creating build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Skeletonization 2026-01-15T00:52:56,133 copying ClearMap/ImageProcessing/Skeletonization/SkeletonProcessing.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Skeletonization 2026-01-15T00:52:56,136 copying ClearMap/ImageProcessing/Skeletonization/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Skeletonization 2026-01-15T00:52:56,137 copying ClearMap/ImageProcessing/Skeletonization/PK12.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Skeletonization 2026-01-15T00:52:56,140 copying ClearMap/ImageProcessing/Skeletonization/Skeletonization.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Skeletonization 2026-01-15T00:52:56,143 creating build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Thresholding 2026-01-15T00:52:56,144 copying ClearMap/ImageProcessing/Thresholding/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Thresholding 2026-01-15T00:52:56,146 copying ClearMap/ImageProcessing/Thresholding/Thresholding.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Thresholding 2026-01-15T00:52:56,149 creating build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Topology 2026-01-15T00:52:56,150 copying ClearMap/ImageProcessing/Topology/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Topology 2026-01-15T00:52:56,152 copying ClearMap/ImageProcessing/Topology/Topology2d.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Topology 2026-01-15T00:52:56,154 copying ClearMap/ImageProcessing/Topology/Topology3d.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Topology 2026-01-15T00:52:56,157 creating build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Tracing 2026-01-15T00:52:56,158 copying ClearMap/ImageProcessing/Tracing/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Tracing 2026-01-15T00:52:56,160 copying ClearMap/ImageProcessing/Tracing/Trace.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Tracing 2026-01-15T00:52:56,163 copying ClearMap/ImageProcessing/Tracing/Connect.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Tracing 2026-01-15T00:52:56,166 creating build/lib.linux-armv7l-cpython-311/ClearMap/IO 2026-01-15T00:52:56,167 copying ClearMap/IO/MHD.py -> build/lib.linux-armv7l-cpython-311/ClearMap/IO 2026-01-15T00:52:56,170 copying ClearMap/IO/IO.py -> build/lib.linux-armv7l-cpython-311/ClearMap/IO 2026-01-15T00:52:56,173 copying ClearMap/IO/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/IO 2026-01-15T00:52:56,175 copying ClearMap/IO/NPY.py -> build/lib.linux-armv7l-cpython-311/ClearMap/IO 2026-01-15T00:52:56,177 copying ClearMap/IO/NRRD.py -> build/lib.linux-armv7l-cpython-311/ClearMap/IO 2026-01-15T00:52:56,180 copying ClearMap/IO/Slice.py -> build/lib.linux-armv7l-cpython-311/ClearMap/IO 2026-01-15T00:52:56,184 copying ClearMap/IO/Source.py -> build/lib.linux-armv7l-cpython-311/ClearMap/IO 2026-01-15T00:52:56,186 copying ClearMap/IO/GT.py -> build/lib.linux-armv7l-cpython-311/ClearMap/IO 2026-01-15T00:52:56,189 copying ClearMap/IO/CSV.py -> build/lib.linux-armv7l-cpython-311/ClearMap/IO 2026-01-15T00:52:56,191 copying ClearMap/IO/SMA.py -> build/lib.linux-armv7l-cpython-311/ClearMap/IO 2026-01-15T00:52:56,194 copying ClearMap/IO/FileUtils.py -> build/lib.linux-armv7l-cpython-311/ClearMap/IO 2026-01-15T00:52:56,197 copying ClearMap/IO/Temporary.py -> build/lib.linux-armv7l-cpython-311/ClearMap/IO 2026-01-15T00:52:56,199 copying ClearMap/IO/MMP.py -> build/lib.linux-armv7l-cpython-311/ClearMap/IO 2026-01-15T00:52:56,202 copying ClearMap/IO/Workspace.py -> build/lib.linux-armv7l-cpython-311/ClearMap/IO 2026-01-15T00:52:56,205 copying ClearMap/IO/TIF.py -> build/lib.linux-armv7l-cpython-311/ClearMap/IO 2026-01-15T00:52:56,208 copying ClearMap/IO/FileList.py -> build/lib.linux-armv7l-cpython-311/ClearMap/IO 2026-01-15T00:52:56,212 creating build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing 2026-01-15T00:52:56,213 copying ClearMap/ParallelProcessing/BlockProcessing.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing 2026-01-15T00:52:56,217 copying ClearMap/ParallelProcessing/SharedMemoryArray.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing 2026-01-15T00:52:56,220 copying ClearMap/ParallelProcessing/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing 2026-01-15T00:52:56,222 copying ClearMap/ParallelProcessing/SharedMemoryManager.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing 2026-01-15T00:52:56,225 copying ClearMap/ParallelProcessing/Block.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing 2026-01-15T00:52:56,228 copying ClearMap/ParallelProcessing/ProcessWriter.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing 2026-01-15T00:52:56,230 copying ClearMap/ParallelProcessing/ParallelTraceback.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing 2026-01-15T00:52:56,233 creating build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing 2026-01-15T00:52:56,235 copying ClearMap/ParallelProcessing/DataProcessing/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing 2026-01-15T00:52:56,237 copying ClearMap/ParallelProcessing/DataProcessing/ConvolvePointList.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing 2026-01-15T00:52:56,240 copying ClearMap/ParallelProcessing/DataProcessing/DevolvePointList.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing 2026-01-15T00:52:56,243 copying ClearMap/ParallelProcessing/DataProcessing/MeasurePointList.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing 2026-01-15T00:52:56,246 copying ClearMap/ParallelProcessing/DataProcessing/StatisticsPointList.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing 2026-01-15T00:52:56,248 copying ClearMap/ParallelProcessing/DataProcessing/ArrayProcessing.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing 2026-01-15T00:52:56,252 creating build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras 2026-01-15T00:52:56,254 copying ClearMap/GF_extras/IlastikClassification.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras 2026-01-15T00:52:56,256 copying ClearMap/GF_extras/clearmap2_statistics_code_v6.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras 2026-01-15T00:52:56,259 copying ClearMap/GF_extras/ilastik_code_v6.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras 2026-01-15T00:52:56,262 copying ClearMap/GF_extras/cell_intensity.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras 2026-01-15T00:52:56,264 copying ClearMap/GF_extras/ilastik_code_v7.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras 2026-01-15T00:52:56,268 copying ClearMap/GF_extras/cell_intensity_dask.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras 2026-01-15T00:52:56,271 copying ClearMap/GF_extras/ilastik_code_v8.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras 2026-01-15T00:52:56,275 creating build/lib.linux-armv7l-cpython-311/ClearMap/Tests 2026-01-15T00:52:56,276 copying ClearMap/Tests/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Tests 2026-01-15T00:52:56,279 copying ClearMap/Tests/Files.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Tests 2026-01-15T00:52:56,282 creating build/lib.linux-armv7l-cpython-311/ClearMap/Scripts 2026-01-15T00:52:56,283 copying ClearMap/Scripts/TubeMap.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Scripts 2026-01-15T00:52:56,286 copying ClearMap/Scripts/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Scripts 2026-01-15T00:52:56,289 copying ClearMap/Scripts/CellMap.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Scripts 2026-01-15T00:52:56,292 copying ClearMap/Scripts/CellMap_zl_20221117.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Scripts 2026-01-15T00:52:56,295 copying ClearMap/Scripts/CellMap_zl_20221116.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Scripts 2026-01-15T00:52:56,298 creating build/lib.linux-armv7l-cpython-311/ClearMap/Utils 2026-01-15T00:52:56,300 copying ClearMap/Utils/Lazy.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Utils 2026-01-15T00:52:56,302 copying ClearMap/Utils/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Utils 2026-01-15T00:52:56,305 copying ClearMap/Utils/HierarchicalDict.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Utils 2026-01-15T00:52:56,307 copying ClearMap/Utils/TagExpression.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Utils 2026-01-15T00:52:56,310 copying ClearMap/Utils/Sound.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Utils 2026-01-15T00:52:56,313 copying ClearMap/Utils/Formatting.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Utils 2026-01-15T00:52:56,315 copying ClearMap/Utils/Timer.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Utils 2026-01-15T00:52:56,317 copying ClearMap/Utils/RegularExpression.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Utils 2026-01-15T00:52:56,320 copying ClearMap/Utils/exceptions.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Utils 2026-01-15T00:52:56,322 copying ClearMap/Utils/utilities.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Utils 2026-01-15T00:52:56,325 creating build/lib.linux-armv7l-cpython-311/ClearMap/Visualization 2026-01-15T00:52:56,327 copying ClearMap/Visualization/Color.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization 2026-01-15T00:52:56,331 copying ClearMap/Visualization/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization 2026-01-15T00:52:56,333 copying ClearMap/Visualization/Plot3d.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization 2026-01-15T00:52:56,335 running egg_info 2026-01-15T00:52:56,350 writing clearmap_nmr.egg-info/PKG-INFO 2026-01-15T00:52:56,354 writing dependency_links to clearmap_nmr.egg-info/dependency_links.txt 2026-01-15T00:52:56,357 writing requirements to clearmap_nmr.egg-info/requires.txt 2026-01-15T00:52:56,358 writing top-level names to clearmap_nmr.egg-info/top_level.txt 2026-01-15T00:52:56,394 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,394 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,395 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,395 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,396 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,396 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,397 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,398 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,398 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,399 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,400 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,400 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,401 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,401 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,402 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,403 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,403 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,404 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,404 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,405 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,405 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,406 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,406 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,407 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,407 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,408 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,409 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,409 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,410 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,410 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,411 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,412 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,413 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,413 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,413 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,414 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,414 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,415 dependency 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dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,420 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,420 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,421 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,422 dependency 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won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,424 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,424 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,425 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,425 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,426 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,427 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,427 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,428 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,428 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,429 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,430 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,430 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,431 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,431 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,432 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,433 dependency /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-01-15T00:52:56,433 reading manifest file 'clearmap_nmr.egg-info/SOURCES.txt' 2026-01-15T00:52:56,433 reading manifest template 'MANIFEST.in' 2026-01-15T00:52:56,900 warning: no previously-included files matching '*.so' found anywhere in distribution 2026-01-15T00:52:56,902 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-01-15T00:52:56,902 adding license file 'LICENSE' 2026-01-15T00:52:56,903 adding license file 'LICENSE.txt' 2026-01-15T00:52:56,917 writing manifest file 'clearmap_nmr.egg-info/SOURCES.txt' 2026-01-15T00:52:56,921 /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.Alignment.Stitching._Todo' is absent from the `packages` configuration. 2026-01-15T00:52:56,922 !! 2026-01-15T00:52:56,923 ******************************************************************************** 2026-01-15T00:52:56,923 ############################ 2026-01-15T00:52:56,924 # Package would be ignored # 2026-01-15T00:52:56,924 ############################ 2026-01-15T00:52:56,925 Python recognizes 'ClearMap.Alignment.Stitching._Todo' as an importable package[^1], 2026-01-15T00:52:56,925 but it is absent from setuptools' `packages` configuration. 2026-01-15T00:52:56,926 This leads to an ambiguous overall configuration. If you want to distribute this 2026-01-15T00:52:56,926 package, please make sure that 'ClearMap.Alignment.Stitching._Todo' is explicitly added 2026-01-15T00:52:56,927 to the `packages` configuration field. 2026-01-15T00:52:56,928 Alternatively, you can also rely on setuptools' discovery methods 2026-01-15T00:52:56,929 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-01-15T00:52:56,929 instead of `find_packages(...)`/`find:`). 2026-01-15T00:52:56,931 You can read more about "package discovery" on setuptools documentation page: 2026-01-15T00:52:56,932 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-01-15T00:52:56,933 If you don't want 'ClearMap.Alignment.Stitching._Todo' to be distributed and are 2026-01-15T00:52:56,934 already explicitly excluding 'ClearMap.Alignment.Stitching._Todo' via 2026-01-15T00:52:56,934 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-01-15T00:52:56,935 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-01-15T00:52:56,935 combination with a more fine grained `package-data` configuration. 2026-01-15T00:52:56,936 You can read more about "package data files" on setuptools documentation page: 2026-01-15T00:52:56,937 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-01-15T00:52:56,939 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-01-15T00:52:56,939 even if it does not contain any `.py` files. 2026-01-15T00:52:56,940 On the other hand, currently there is no concept of package data 2026-01-15T00:52:56,941 directory, all directories are treated like packages. 2026-01-15T00:52:56,941 ******************************************************************************** 2026-01-15T00:52:56,942 !! 2026-01-15T00:52:56,943 check.warn(importable) 2026-01-15T00:52:56,943 /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.Analysis.Measurements._Todo' is absent from the `packages` configuration. 2026-01-15T00:52:56,944 !! 2026-01-15T00:52:56,944 ******************************************************************************** 2026-01-15T00:52:56,945 ############################ 2026-01-15T00:52:56,945 # Package would be ignored # 2026-01-15T00:52:56,946 ############################ 2026-01-15T00:52:56,946 Python recognizes 'ClearMap.Analysis.Measurements._Todo' as an importable package[^1], 2026-01-15T00:52:56,946 but it is absent from setuptools' `packages` configuration. 2026-01-15T00:52:56,947 This leads to an ambiguous overall configuration. If you want to distribute this 2026-01-15T00:52:56,947 package, please make sure that 'ClearMap.Analysis.Measurements._Todo' is explicitly added 2026-01-15T00:52:56,948 to the `packages` configuration field. 2026-01-15T00:52:56,949 Alternatively, you can also rely on setuptools' discovery methods 2026-01-15T00:52:56,949 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-01-15T00:52:56,949 instead of `find_packages(...)`/`find:`). 2026-01-15T00:52:56,950 You can read more about "package discovery" on setuptools documentation page: 2026-01-15T00:52:56,951 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-01-15T00:52:56,952 If you don't want 'ClearMap.Analysis.Measurements._Todo' to be distributed and are 2026-01-15T00:52:56,953 already explicitly excluding 'ClearMap.Analysis.Measurements._Todo' via 2026-01-15T00:52:56,953 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-01-15T00:52:56,954 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-01-15T00:52:56,954 combination with a more fine grained `package-data` configuration. 2026-01-15T00:52:56,955 You can read more about "package data files" on setuptools documentation page: 2026-01-15T00:52:56,956 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-01-15T00:52:56,958 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-01-15T00:52:56,959 even if it does not contain any `.py` files. 2026-01-15T00:52:56,959 On the other hand, currently there is no concept of package data 2026-01-15T00:52:56,960 directory, all directories are treated like packages. 2026-01-15T00:52:56,960 ******************************************************************************** 2026-01-15T00:52:56,961 !! 2026-01-15T00:52:56,961 check.warn(importable) 2026-01-15T00:52:56,962 /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.External' is absent from the `packages` configuration. 2026-01-15T00:52:56,962 !! 2026-01-15T00:52:56,963 ******************************************************************************** 2026-01-15T00:52:56,964 ############################ 2026-01-15T00:52:56,964 # Package would be ignored # 2026-01-15T00:52:56,965 ############################ 2026-01-15T00:52:56,965 Python recognizes 'ClearMap.External' as an importable package[^1], 2026-01-15T00:52:56,966 but it is absent from setuptools' `packages` configuration. 2026-01-15T00:52:56,967 This leads to an ambiguous overall configuration. If you want to distribute this 2026-01-15T00:52:56,967 package, please make sure that 'ClearMap.External' is explicitly added 2026-01-15T00:52:56,968 to the `packages` configuration field. 2026-01-15T00:52:56,969 Alternatively, you can also rely on setuptools' discovery methods 2026-01-15T00:52:56,969 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-01-15T00:52:56,970 instead of `find_packages(...)`/`find:`). 2026-01-15T00:52:56,970 You can read more about "package discovery" on setuptools documentation page: 2026-01-15T00:52:56,971 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-01-15T00:52:56,972 If you don't want 'ClearMap.External' to be distributed and are 2026-01-15T00:52:56,972 already explicitly excluding 'ClearMap.External' via 2026-01-15T00:52:56,973 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-01-15T00:52:56,973 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-01-15T00:52:56,973 combination with a more fine grained `package-data` configuration. 2026-01-15T00:52:56,974 You can read more about "package data files" on setuptools documentation page: 2026-01-15T00:52:56,975 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-01-15T00:52:56,976 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-01-15T00:52:56,976 even if it does not contain any `.py` files. 2026-01-15T00:52:56,977 On the other hand, currently there is no concept of package data 2026-01-15T00:52:56,977 directory, all directories are treated like packages. 2026-01-15T00:52:56,977 ******************************************************************************** 2026-01-15T00:52:56,979 !! 2026-01-15T00:52:56,979 check.warn(importable) 2026-01-15T00:52:56,980 /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.External.elastix.src.Testing' is absent from the `packages` configuration. 2026-01-15T00:52:56,980 !! 2026-01-15T00:52:56,981 ******************************************************************************** 2026-01-15T00:52:56,982 ############################ 2026-01-15T00:52:56,982 # Package would be ignored # 2026-01-15T00:52:56,983 ############################ 2026-01-15T00:52:56,984 Python recognizes 'ClearMap.External.elastix.src.Testing' as an importable package[^1], 2026-01-15T00:52:56,984 but it is absent from setuptools' `packages` configuration. 2026-01-15T00:52:56,985 This leads to an ambiguous overall configuration. If you want to distribute this 2026-01-15T00:52:56,986 package, please make sure that 'ClearMap.External.elastix.src.Testing' is explicitly added 2026-01-15T00:52:56,986 to the `packages` configuration field. 2026-01-15T00:52:56,987 Alternatively, you can also rely on setuptools' discovery methods 2026-01-15T00:52:56,988 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-01-15T00:52:56,988 instead of `find_packages(...)`/`find:`). 2026-01-15T00:52:56,989 You can read more about "package discovery" on setuptools documentation page: 2026-01-15T00:52:56,990 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-01-15T00:52:56,991 If you don't want 'ClearMap.External.elastix.src.Testing' to be distributed and are 2026-01-15T00:52:56,992 already explicitly excluding 'ClearMap.External.elastix.src.Testing' via 2026-01-15T00:52:56,992 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-01-15T00:52:56,993 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-01-15T00:52:56,993 combination with a more fine grained `package-data` configuration. 2026-01-15T00:52:56,995 You can read more about "package data files" on setuptools documentation page: 2026-01-15T00:52:56,995 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-01-15T00:52:56,996 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-01-15T00:52:56,997 even if it does not contain any `.py` files. 2026-01-15T00:52:56,997 On the other hand, currently there is no concept of package data 2026-01-15T00:52:56,997 directory, all directories are treated like packages. 2026-01-15T00:52:56,998 ******************************************************************************** 2026-01-15T00:52:56,998 !! 2026-01-15T00:52:56,999 check.warn(importable) 2026-01-15T00:52:56,999 /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.External.elastix.src.tools' is absent from the `packages` configuration. 2026-01-15T00:52:56,999 !! 2026-01-15T00:52:57,000 ******************************************************************************** 2026-01-15T00:52:57,000 ############################ 2026-01-15T00:52:57,001 # Package would be ignored # 2026-01-15T00:52:57,001 ############################ 2026-01-15T00:52:57,002 Python recognizes 'ClearMap.External.elastix.src.tools' as an importable package[^1], 2026-01-15T00:52:57,002 but it is absent from setuptools' `packages` configuration. 2026-01-15T00:52:57,003 This leads to an ambiguous overall configuration. If you want to distribute this 2026-01-15T00:52:57,003 package, please make sure that 'ClearMap.External.elastix.src.tools' is explicitly added 2026-01-15T00:52:57,003 to the `packages` configuration field. 2026-01-15T00:52:57,005 Alternatively, you can also rely on setuptools' discovery methods 2026-01-15T00:52:57,005 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-01-15T00:52:57,006 instead of `find_packages(...)`/`find:`). 2026-01-15T00:52:57,007 You can read more about "package discovery" on setuptools documentation page: 2026-01-15T00:52:57,008 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-01-15T00:52:57,009 If you don't want 'ClearMap.External.elastix.src.tools' to be distributed and are 2026-01-15T00:52:57,010 already explicitly excluding 'ClearMap.External.elastix.src.tools' via 2026-01-15T00:52:57,010 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-01-15T00:52:57,011 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-01-15T00:52:57,011 combination with a more fine grained `package-data` configuration. 2026-01-15T00:52:57,012 You can read more about "package data files" on setuptools documentation page: 2026-01-15T00:52:57,013 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-01-15T00:52:57,015 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-01-15T00:52:57,015 even if it does not contain any `.py` files. 2026-01-15T00:52:57,016 On the other hand, currently there is no concept of package data 2026-01-15T00:52:57,016 directory, all directories are treated like packages. 2026-01-15T00:52:57,017 ******************************************************************************** 2026-01-15T00:52:57,018 !! 2026-01-15T00:52:57,019 check.warn(importable) 2026-01-15T00:52:57,019 /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.External.geodesic_distance' is absent from the `packages` configuration. 2026-01-15T00:52:57,020 !! 2026-01-15T00:52:57,021 ******************************************************************************** 2026-01-15T00:52:57,022 ############################ 2026-01-15T00:52:57,022 # Package would be ignored # 2026-01-15T00:52:57,023 ############################ 2026-01-15T00:52:57,023 Python recognizes 'ClearMap.External.geodesic_distance' as an importable package[^1], 2026-01-15T00:52:57,024 but it is absent from setuptools' `packages` configuration. 2026-01-15T00:52:57,025 This leads to an ambiguous overall configuration. If you want to distribute this 2026-01-15T00:52:57,025 package, please make sure that 'ClearMap.External.geodesic_distance' is explicitly added 2026-01-15T00:52:57,025 to the `packages` configuration field. 2026-01-15T00:52:57,026 Alternatively, you can also rely on setuptools' discovery methods 2026-01-15T00:52:57,027 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-01-15T00:52:57,027 instead of `find_packages(...)`/`find:`). 2026-01-15T00:52:57,028 You can read more about "package discovery" on setuptools documentation page: 2026-01-15T00:52:57,029 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-01-15T00:52:57,030 If you don't want 'ClearMap.External.geodesic_distance' to be distributed and are 2026-01-15T00:52:57,031 already explicitly excluding 'ClearMap.External.geodesic_distance' via 2026-01-15T00:52:57,031 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-01-15T00:52:57,032 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-01-15T00:52:57,032 combination with a more fine grained `package-data` configuration. 2026-01-15T00:52:57,033 You can read more about "package data files" on setuptools documentation page: 2026-01-15T00:52:57,034 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-01-15T00:52:57,036 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-01-15T00:52:57,036 even if it does not contain any `.py` files. 2026-01-15T00:52:57,037 On the other hand, currently there is no concept of package data 2026-01-15T00:52:57,038 directory, all directories are treated like packages. 2026-01-15T00:52:57,038 ******************************************************************************** 2026-01-15T00:52:57,039 !! 2026-01-15T00:52:57,040 check.warn(importable) 2026-01-15T00:52:57,040 /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.GF_extras.clearmap1_GF' is absent from the `packages` configuration. 2026-01-15T00:52:57,041 !! 2026-01-15T00:52:57,042 ******************************************************************************** 2026-01-15T00:52:57,042 ############################ 2026-01-15T00:52:57,043 # Package would be ignored # 2026-01-15T00:52:57,044 ############################ 2026-01-15T00:52:57,044 Python recognizes 'ClearMap.GF_extras.clearmap1_GF' as an importable package[^1], 2026-01-15T00:52:57,045 but it is absent from setuptools' `packages` configuration. 2026-01-15T00:52:57,046 This leads to an ambiguous overall configuration. If you want to distribute this 2026-01-15T00:52:57,046 package, please make sure that 'ClearMap.GF_extras.clearmap1_GF' is explicitly added 2026-01-15T00:52:57,047 to the `packages` configuration field. 2026-01-15T00:52:57,049 Alternatively, you can also rely on setuptools' discovery methods 2026-01-15T00:52:57,049 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-01-15T00:52:57,050 instead of `find_packages(...)`/`find:`). 2026-01-15T00:52:57,051 You can read more about "package discovery" on setuptools documentation page: 2026-01-15T00:52:57,052 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-01-15T00:52:57,054 If you don't want 'ClearMap.GF_extras.clearmap1_GF' to be distributed and are 2026-01-15T00:52:57,054 already explicitly excluding 'ClearMap.GF_extras.clearmap1_GF' via 2026-01-15T00:52:57,054 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-01-15T00:52:57,055 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-01-15T00:52:57,055 combination with a more fine grained `package-data` configuration. 2026-01-15T00:52:57,056 You can read more about "package data files" on setuptools documentation page: 2026-01-15T00:52:57,057 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-01-15T00:52:57,058 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-01-15T00:52:57,059 even if it does not contain any `.py` files. 2026-01-15T00:52:57,059 On the other hand, currently there is no concept of package data 2026-01-15T00:52:57,060 directory, all directories are treated like packages. 2026-01-15T00:52:57,060 ******************************************************************************** 2026-01-15T00:52:57,061 !! 2026-01-15T00:52:57,061 check.warn(importable) 2026-01-15T00:52:57,062 /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.GF_extras.clearmap1_GF.Analysis' is absent from the `packages` configuration. 2026-01-15T00:52:57,062 !! 2026-01-15T00:52:57,063 ******************************************************************************** 2026-01-15T00:52:57,064 ############################ 2026-01-15T00:52:57,064 # Package would be ignored # 2026-01-15T00:52:57,065 ############################ 2026-01-15T00:52:57,065 Python recognizes 'ClearMap.GF_extras.clearmap1_GF.Analysis' as an importable package[^1], 2026-01-15T00:52:57,066 but it is absent from setuptools' `packages` configuration. 2026-01-15T00:52:57,067 This leads to an ambiguous overall configuration. If you want to distribute this 2026-01-15T00:52:57,067 package, please make sure that 'ClearMap.GF_extras.clearmap1_GF.Analysis' is explicitly added 2026-01-15T00:52:57,068 to the `packages` configuration field. 2026-01-15T00:52:57,069 Alternatively, you can also rely on setuptools' discovery methods 2026-01-15T00:52:57,069 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-01-15T00:52:57,070 instead of `find_packages(...)`/`find:`). 2026-01-15T00:52:57,071 You can read more about "package discovery" on setuptools documentation page: 2026-01-15T00:52:57,072 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-01-15T00:52:57,073 If you don't want 'ClearMap.GF_extras.clearmap1_GF.Analysis' to be distributed and are 2026-01-15T00:52:57,073 already explicitly excluding 'ClearMap.GF_extras.clearmap1_GF.Analysis' via 2026-01-15T00:52:57,074 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-01-15T00:52:57,074 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-01-15T00:52:57,075 combination with a more fine grained `package-data` configuration. 2026-01-15T00:52:57,076 You can read more about "package data files" on setuptools documentation page: 2026-01-15T00:52:57,077 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-01-15T00:52:57,078 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-01-15T00:52:57,079 even if it does not contain any `.py` files. 2026-01-15T00:52:57,079 On the other hand, currently there is no concept of package data 2026-01-15T00:52:57,080 directory, all directories are treated like packages. 2026-01-15T00:52:57,081 ******************************************************************************** 2026-01-15T00:52:57,082 !! 2026-01-15T00:52:57,082 check.warn(importable) 2026-01-15T00:52:57,082 /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.GF_extras.clearmap1_GF.ImageProcessing' is absent from the `packages` configuration. 2026-01-15T00:52:57,083 !! 2026-01-15T00:52:57,083 ******************************************************************************** 2026-01-15T00:52:57,084 ############################ 2026-01-15T00:52:57,084 # Package would be ignored # 2026-01-15T00:52:57,084 ############################ 2026-01-15T00:52:57,085 Python recognizes 'ClearMap.GF_extras.clearmap1_GF.ImageProcessing' as an importable package[^1], 2026-01-15T00:52:57,085 but it is absent from setuptools' `packages` configuration. 2026-01-15T00:52:57,086 This leads to an ambiguous overall configuration. If you want to distribute this 2026-01-15T00:52:57,086 package, please make sure that 'ClearMap.GF_extras.clearmap1_GF.ImageProcessing' is explicitly added 2026-01-15T00:52:57,086 to the `packages` configuration field. 2026-01-15T00:52:57,087 Alternatively, you can also rely on setuptools' discovery methods 2026-01-15T00:52:57,088 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-01-15T00:52:57,088 instead of `find_packages(...)`/`find:`). 2026-01-15T00:52:57,089 You can read more about "package discovery" on setuptools documentation page: 2026-01-15T00:52:57,090 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-01-15T00:52:57,091 If you don't want 'ClearMap.GF_extras.clearmap1_GF.ImageProcessing' to be distributed and are 2026-01-15T00:52:57,092 already explicitly excluding 'ClearMap.GF_extras.clearmap1_GF.ImageProcessing' via 2026-01-15T00:52:57,092 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-01-15T00:52:57,093 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-01-15T00:52:57,093 combination with a more fine grained `package-data` configuration. 2026-01-15T00:52:57,094 You can read more about "package data files" on setuptools documentation page: 2026-01-15T00:52:57,095 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-01-15T00:52:57,097 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-01-15T00:52:57,097 even if it does not contain any `.py` files. 2026-01-15T00:52:57,098 On the other hand, currently there is no concept of package data 2026-01-15T00:52:57,098 directory, all directories are treated like packages. 2026-01-15T00:52:57,099 ******************************************************************************** 2026-01-15T00:52:57,100 !! 2026-01-15T00:52:57,100 check.warn(importable) 2026-01-15T00:52:57,101 /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.GF_extras.clearmap1_GF.ImageProcessing.Filter' is absent from the `packages` configuration. 2026-01-15T00:52:57,102 !! 2026-01-15T00:52:57,103 ******************************************************************************** 2026-01-15T00:52:57,103 ############################ 2026-01-15T00:52:57,104 # Package would be ignored # 2026-01-15T00:52:57,104 ############################ 2026-01-15T00:52:57,105 Python recognizes 'ClearMap.GF_extras.clearmap1_GF.ImageProcessing.Filter' as an importable package[^1], 2026-01-15T00:52:57,105 but it is absent from setuptools' `packages` configuration. 2026-01-15T00:52:57,107 This leads to an ambiguous overall configuration. If you want to distribute this 2026-01-15T00:52:57,107 package, please make sure that 'ClearMap.GF_extras.clearmap1_GF.ImageProcessing.Filter' is explicitly added 2026-01-15T00:52:57,107 to the `packages` configuration field. 2026-01-15T00:52:57,108 Alternatively, you can also rely on setuptools' discovery methods 2026-01-15T00:52:57,109 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-01-15T00:52:57,109 instead of `find_packages(...)`/`find:`). 2026-01-15T00:52:57,110 You can read more about "package discovery" on setuptools documentation page: 2026-01-15T00:52:57,111 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-01-15T00:52:57,112 If you don't want 'ClearMap.GF_extras.clearmap1_GF.ImageProcessing.Filter' to be distributed and are 2026-01-15T00:52:57,112 already explicitly excluding 'ClearMap.GF_extras.clearmap1_GF.ImageProcessing.Filter' via 2026-01-15T00:52:57,113 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-01-15T00:52:57,113 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-01-15T00:52:57,114 combination with a more fine grained `package-data` configuration. 2026-01-15T00:52:57,115 You can read more about "package data files" on setuptools documentation page: 2026-01-15T00:52:57,115 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-01-15T00:52:57,117 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-01-15T00:52:57,118 even if it does not contain any `.py` files. 2026-01-15T00:52:57,118 On the other hand, currently there is no concept of package data 2026-01-15T00:52:57,119 directory, all directories are treated like packages. 2026-01-15T00:52:57,120 ******************************************************************************** 2026-01-15T00:52:57,121 !! 2026-01-15T00:52:57,122 check.warn(importable) 2026-01-15T00:52:57,122 /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.ImageProcessing.Filter.Rank._Todo.RankInterpolation' is absent from the `packages` configuration. 2026-01-15T00:52:57,123 !! 2026-01-15T00:52:57,124 ******************************************************************************** 2026-01-15T00:52:57,125 ############################ 2026-01-15T00:52:57,125 # Package would be ignored # 2026-01-15T00:52:57,126 ############################ 2026-01-15T00:52:57,127 Python recognizes 'ClearMap.ImageProcessing.Filter.Rank._Todo.RankInterpolation' as an importable package[^1], 2026-01-15T00:52:57,127 but it is absent from setuptools' `packages` configuration. 2026-01-15T00:52:57,128 This leads to an ambiguous overall configuration. If you want to distribute this 2026-01-15T00:52:57,129 package, please make sure that 'ClearMap.ImageProcessing.Filter.Rank._Todo.RankInterpolation' is explicitly added 2026-01-15T00:52:57,130 to the `packages` configuration field. 2026-01-15T00:52:57,131 Alternatively, you can also rely on setuptools' discovery methods 2026-01-15T00:52:57,132 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-01-15T00:52:57,132 instead of `find_packages(...)`/`find:`). 2026-01-15T00:52:57,133 You can read more about "package discovery" on setuptools documentation page: 2026-01-15T00:52:57,134 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-01-15T00:52:57,135 If you don't want 'ClearMap.ImageProcessing.Filter.Rank._Todo.RankInterpolation' to be distributed and are 2026-01-15T00:52:57,136 already explicitly excluding 'ClearMap.ImageProcessing.Filter.Rank._Todo.RankInterpolation' via 2026-01-15T00:52:57,136 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-01-15T00:52:57,137 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-01-15T00:52:57,137 combination with a more fine grained `package-data` configuration. 2026-01-15T00:52:57,138 You can read more about "package data files" on setuptools documentation page: 2026-01-15T00:52:57,139 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-01-15T00:52:57,140 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-01-15T00:52:57,141 even if it does not contain any `.py` files. 2026-01-15T00:52:57,141 On the other hand, currently there is no concept of package data 2026-01-15T00:52:57,142 directory, all directories are treated like packages. 2026-01-15T00:52:57,142 ******************************************************************************** 2026-01-15T00:52:57,143 !! 2026-01-15T00:52:57,143 check.warn(importable) 2026-01-15T00:52:57,144 /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.ImageProcessing.MachineLearning' is absent from the `packages` configuration. 2026-01-15T00:52:57,144 !! 2026-01-15T00:52:57,145 ******************************************************************************** 2026-01-15T00:52:57,146 ############################ 2026-01-15T00:52:57,146 # Package would be ignored # 2026-01-15T00:52:57,147 ############################ 2026-01-15T00:52:57,147 Python recognizes 'ClearMap.ImageProcessing.MachineLearning' as an importable package[^1], 2026-01-15T00:52:57,148 but it is absent from setuptools' `packages` configuration. 2026-01-15T00:52:57,148 This leads to an ambiguous overall configuration. If you want to distribute this 2026-01-15T00:52:57,149 package, please make sure that 'ClearMap.ImageProcessing.MachineLearning' is explicitly added 2026-01-15T00:52:57,149 to the `packages` configuration field. 2026-01-15T00:52:57,150 Alternatively, you can also rely on setuptools' discovery methods 2026-01-15T00:52:57,151 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-01-15T00:52:57,151 instead of `find_packages(...)`/`find:`). 2026-01-15T00:52:57,152 You can read more about "package discovery" on setuptools documentation page: 2026-01-15T00:52:57,153 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-01-15T00:52:57,155 If you don't want 'ClearMap.ImageProcessing.MachineLearning' to be distributed and are 2026-01-15T00:52:57,155 already explicitly excluding 'ClearMap.ImageProcessing.MachineLearning' via 2026-01-15T00:52:57,156 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-01-15T00:52:57,156 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-01-15T00:52:57,157 combination with a more fine grained `package-data` configuration. 2026-01-15T00:52:57,158 You can read more about "package data files" on setuptools documentation page: 2026-01-15T00:52:57,159 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-01-15T00:52:57,160 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-01-15T00:52:57,161 even if it does not contain any `.py` files. 2026-01-15T00:52:57,161 On the other hand, currently there is no concept of package data 2026-01-15T00:52:57,162 directory, all directories are treated like packages. 2026-01-15T00:52:57,163 ******************************************************************************** 2026-01-15T00:52:57,164 !! 2026-01-15T00:52:57,164 check.warn(importable) 2026-01-15T00:52:57,165 /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.ImageProcessing.MachineLearning.VesselFilling' is absent from the `packages` configuration. 2026-01-15T00:52:57,165 !! 2026-01-15T00:52:57,166 ******************************************************************************** 2026-01-15T00:52:57,166 ############################ 2026-01-15T00:52:57,167 # Package would be ignored # 2026-01-15T00:52:57,168 ############################ 2026-01-15T00:52:57,168 Python recognizes 'ClearMap.ImageProcessing.MachineLearning.VesselFilling' as an importable package[^1], 2026-01-15T00:52:57,168 but it is absent from setuptools' `packages` configuration. 2026-01-15T00:52:57,169 This leads to an ambiguous overall configuration. If you want to distribute this 2026-01-15T00:52:57,170 package, please make sure that 'ClearMap.ImageProcessing.MachineLearning.VesselFilling' is explicitly added 2026-01-15T00:52:57,170 to the `packages` configuration field. 2026-01-15T00:52:57,171 Alternatively, you can also rely on setuptools' discovery methods 2026-01-15T00:52:57,172 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-01-15T00:52:57,172 instead of `find_packages(...)`/`find:`). 2026-01-15T00:52:57,173 You can read more about "package discovery" on setuptools documentation page: 2026-01-15T00:52:57,174 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-01-15T00:52:57,175 If you don't want 'ClearMap.ImageProcessing.MachineLearning.VesselFilling' to be distributed and are 2026-01-15T00:52:57,175 already explicitly excluding 'ClearMap.ImageProcessing.MachineLearning.VesselFilling' via 2026-01-15T00:52:57,176 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-01-15T00:52:57,176 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-01-15T00:52:57,177 combination with a more fine grained `package-data` configuration. 2026-01-15T00:52:57,178 You can read more about "package data files" on setuptools documentation page: 2026-01-15T00:52:57,179 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-01-15T00:52:57,181 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-01-15T00:52:57,181 even if it does not contain any `.py` files. 2026-01-15T00:52:57,182 On the other hand, currently there is no concept of package data 2026-01-15T00:52:57,183 directory, all directories are treated like packages. 2026-01-15T00:52:57,183 ******************************************************************************** 2026-01-15T00:52:57,184 !! 2026-01-15T00:52:57,185 check.warn(importable) 2026-01-15T00:52:57,186 /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.ImageProcessing.MachineLearning.VesselFilling.Training' is absent from the `packages` configuration. 2026-01-15T00:52:57,186 !! 2026-01-15T00:52:57,187 ******************************************************************************** 2026-01-15T00:52:57,188 ############################ 2026-01-15T00:52:57,188 # Package would be ignored # 2026-01-15T00:52:57,189 ############################ 2026-01-15T00:52:57,189 Python recognizes 'ClearMap.ImageProcessing.MachineLearning.VesselFilling.Training' as an importable package[^1], 2026-01-15T00:52:57,190 but it is absent from setuptools' `packages` configuration. 2026-01-15T00:52:57,191 This leads to an ambiguous overall configuration. If you want to distribute this 2026-01-15T00:52:57,191 package, please make sure that 'ClearMap.ImageProcessing.MachineLearning.VesselFilling.Training' is explicitly added 2026-01-15T00:52:57,192 to the `packages` configuration field. 2026-01-15T00:52:57,193 Alternatively, you can also rely on setuptools' discovery methods 2026-01-15T00:52:57,194 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-01-15T00:52:57,194 instead of `find_packages(...)`/`find:`). 2026-01-15T00:52:57,195 You can read more about "package discovery" on setuptools documentation page: 2026-01-15T00:52:57,196 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-01-15T00:52:57,197 If you don't want 'ClearMap.ImageProcessing.MachineLearning.VesselFilling.Training' to be distributed and are 2026-01-15T00:52:57,197 already explicitly excluding 'ClearMap.ImageProcessing.MachineLearning.VesselFilling.Training' via 2026-01-15T00:52:57,198 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-01-15T00:52:57,198 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-01-15T00:52:57,198 combination with a more fine grained `package-data` configuration. 2026-01-15T00:52:57,199 You can read more about "package data files" on setuptools documentation page: 2026-01-15T00:52:57,200 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-01-15T00:52:57,202 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-01-15T00:52:57,202 even if it does not contain any `.py` files. 2026-01-15T00:52:57,202 On the other hand, currently there is no concept of package data 2026-01-15T00:52:57,203 directory, all directories are treated like packages. 2026-01-15T00:52:57,204 ******************************************************************************** 2026-01-15T00:52:57,205 !! 2026-01-15T00:52:57,205 check.warn(importable) 2026-01-15T00:52:57,205 /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.ImageProcessing.Thresholding._Todo.HysteresisThresholding' is absent from the `packages` configuration. 2026-01-15T00:52:57,206 !! 2026-01-15T00:52:57,207 ******************************************************************************** 2026-01-15T00:52:57,208 ############################ 2026-01-15T00:52:57,208 # Package would be ignored # 2026-01-15T00:52:57,209 ############################ 2026-01-15T00:52:57,209 Python recognizes 'ClearMap.ImageProcessing.Thresholding._Todo.HysteresisThresholding' as an importable package[^1], 2026-01-15T00:52:57,210 but it is absent from setuptools' `packages` configuration. 2026-01-15T00:52:57,211 This leads to an ambiguous overall configuration. If you want to distribute this 2026-01-15T00:52:57,212 package, please make sure that 'ClearMap.ImageProcessing.Thresholding._Todo.HysteresisThresholding' is explicitly added 2026-01-15T00:52:57,212 to the `packages` configuration field. 2026-01-15T00:52:57,213 Alternatively, you can also rely on setuptools' discovery methods 2026-01-15T00:52:57,214 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-01-15T00:52:57,214 instead of `find_packages(...)`/`find:`). 2026-01-15T00:52:57,215 You can read more about "package discovery" on setuptools documentation page: 2026-01-15T00:52:57,216 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-01-15T00:52:57,217 If you don't want 'ClearMap.ImageProcessing.Thresholding._Todo.HysteresisThresholding' to be distributed and are 2026-01-15T00:52:57,218 already explicitly excluding 'ClearMap.ImageProcessing.Thresholding._Todo.HysteresisThresholding' via 2026-01-15T00:52:57,219 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-01-15T00:52:57,219 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-01-15T00:52:57,220 combination with a more fine grained `package-data` configuration. 2026-01-15T00:52:57,221 You can read more about "package data files" on setuptools documentation page: 2026-01-15T00:52:57,222 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-01-15T00:52:57,223 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-01-15T00:52:57,223 even if it does not contain any `.py` files. 2026-01-15T00:52:57,224 On the other hand, currently there is no concept of package data 2026-01-15T00:52:57,224 directory, all directories are treated like packages. 2026-01-15T00:52:57,224 ******************************************************************************** 2026-01-15T00:52:57,225 !! 2026-01-15T00:52:57,226 check.warn(importable) 2026-01-15T00:52:57,226 /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.ImageProcessing.Thresholding._Todo.SeededThresholding' is absent from the `packages` configuration. 2026-01-15T00:52:57,227 !! 2026-01-15T00:52:57,228 ******************************************************************************** 2026-01-15T00:52:57,228 ############################ 2026-01-15T00:52:57,229 # Package would be ignored # 2026-01-15T00:52:57,229 ############################ 2026-01-15T00:52:57,230 Python recognizes 'ClearMap.ImageProcessing.Thresholding._Todo.SeededThresholding' as an importable package[^1], 2026-01-15T00:52:57,230 but it is absent from setuptools' `packages` configuration. 2026-01-15T00:52:57,231 This leads to an ambiguous overall configuration. If you want to distribute this 2026-01-15T00:52:57,232 package, please make sure that 'ClearMap.ImageProcessing.Thresholding._Todo.SeededThresholding' is explicitly added 2026-01-15T00:52:57,232 to the `packages` configuration field. 2026-01-15T00:52:57,233 Alternatively, you can also rely on setuptools' discovery methods 2026-01-15T00:52:57,234 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-01-15T00:52:57,234 instead of `find_packages(...)`/`find:`). 2026-01-15T00:52:57,235 You can read more about "package discovery" on setuptools documentation page: 2026-01-15T00:52:57,236 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-01-15T00:52:57,237 If you don't want 'ClearMap.ImageProcessing.Thresholding._Todo.SeededThresholding' to be distributed and are 2026-01-15T00:52:57,238 already explicitly excluding 'ClearMap.ImageProcessing.Thresholding._Todo.SeededThresholding' via 2026-01-15T00:52:57,239 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-01-15T00:52:57,239 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-01-15T00:52:57,240 combination with a more fine grained `package-data` configuration. 2026-01-15T00:52:57,241 You can read more about "package data files" on setuptools documentation page: 2026-01-15T00:52:57,242 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-01-15T00:52:57,243 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-01-15T00:52:57,244 even if it does not contain any `.py` files. 2026-01-15T00:52:57,244 On the other hand, currently there is no concept of package data 2026-01-15T00:52:57,245 directory, all directories are treated like packages. 2026-01-15T00:52:57,245 ******************************************************************************** 2026-01-15T00:52:57,247 !! 2026-01-15T00:52:57,247 check.warn(importable) 2026-01-15T00:52:57,248 /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.ParallelProcessing.DataProcessing._Old' is absent from the `packages` configuration. 2026-01-15T00:52:57,248 !! 2026-01-15T00:52:57,249 ******************************************************************************** 2026-01-15T00:52:57,249 ############################ 2026-01-15T00:52:57,250 # Package would be ignored # 2026-01-15T00:52:57,250 ############################ 2026-01-15T00:52:57,251 Python recognizes 'ClearMap.ParallelProcessing.DataProcessing._Old' as an importable package[^1], 2026-01-15T00:52:57,251 but it is absent from setuptools' `packages` configuration. 2026-01-15T00:52:57,252 This leads to an ambiguous overall configuration. If you want to distribute this 2026-01-15T00:52:57,252 package, please make sure that 'ClearMap.ParallelProcessing.DataProcessing._Old' is explicitly added 2026-01-15T00:52:57,253 to the `packages` configuration field. 2026-01-15T00:52:57,253 Alternatively, you can also rely on setuptools' discovery methods 2026-01-15T00:52:57,254 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-01-15T00:52:57,254 instead of `find_packages(...)`/`find:`). 2026-01-15T00:52:57,256 You can read more about "package discovery" on setuptools documentation page: 2026-01-15T00:52:57,256 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-01-15T00:52:57,257 If you don't want 'ClearMap.ParallelProcessing.DataProcessing._Old' to be distributed and are 2026-01-15T00:52:57,258 already explicitly excluding 'ClearMap.ParallelProcessing.DataProcessing._Old' via 2026-01-15T00:52:57,259 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-01-15T00:52:57,259 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-01-15T00:52:57,259 combination with a more fine grained `package-data` configuration. 2026-01-15T00:52:57,260 You can read more about "package data files" on setuptools documentation page: 2026-01-15T00:52:57,261 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-01-15T00:52:57,263 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-01-15T00:52:57,263 even if it does not contain any `.py` files. 2026-01-15T00:52:57,264 On the other hand, currently there is no concept of package data 2026-01-15T00:52:57,264 directory, all directories are treated like packages. 2026-01-15T00:52:57,265 ******************************************************************************** 2026-01-15T00:52:57,266 !! 2026-01-15T00:52:57,266 check.warn(importable) 2026-01-15T00:52:57,267 /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.Visualization.Matplotlib' is absent from the `packages` configuration. 2026-01-15T00:52:57,267 !! 2026-01-15T00:52:57,268 ******************************************************************************** 2026-01-15T00:52:57,269 ############################ 2026-01-15T00:52:57,269 # Package would be ignored # 2026-01-15T00:52:57,270 ############################ 2026-01-15T00:52:57,270 Python recognizes 'ClearMap.Visualization.Matplotlib' as an importable package[^1], 2026-01-15T00:52:57,271 but it is absent from setuptools' `packages` configuration. 2026-01-15T00:52:57,272 This leads to an ambiguous overall configuration. If you want to distribute this 2026-01-15T00:52:57,273 package, please make sure that 'ClearMap.Visualization.Matplotlib' is explicitly added 2026-01-15T00:52:57,273 to the `packages` configuration field. 2026-01-15T00:52:57,275 Alternatively, you can also rely on setuptools' discovery methods 2026-01-15T00:52:57,275 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-01-15T00:52:57,276 instead of `find_packages(...)`/`find:`). 2026-01-15T00:52:57,276 You can read more about "package discovery" on setuptools documentation page: 2026-01-15T00:52:57,277 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-01-15T00:52:57,278 If you don't want 'ClearMap.Visualization.Matplotlib' to be distributed and are 2026-01-15T00:52:57,279 already explicitly excluding 'ClearMap.Visualization.Matplotlib' via 2026-01-15T00:52:57,279 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-01-15T00:52:57,279 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-01-15T00:52:57,280 combination with a more fine grained `package-data` configuration. 2026-01-15T00:52:57,281 You can read more about "package data files" on setuptools documentation page: 2026-01-15T00:52:57,282 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-01-15T00:52:57,284 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-01-15T00:52:57,284 even if it does not contain any `.py` files. 2026-01-15T00:52:57,285 On the other hand, currently there is no concept of package data 2026-01-15T00:52:57,286 directory, all directories are treated like packages. 2026-01-15T00:52:57,286 ******************************************************************************** 2026-01-15T00:52:57,287 !! 2026-01-15T00:52:57,288 check.warn(importable) 2026-01-15T00:52:57,288 /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.Visualization.Mesh' is absent from the `packages` configuration. 2026-01-15T00:52:57,289 !! 2026-01-15T00:52:57,290 ******************************************************************************** 2026-01-15T00:52:57,290 ############################ 2026-01-15T00:52:57,291 # Package would be ignored # 2026-01-15T00:52:57,291 ############################ 2026-01-15T00:52:57,292 Python recognizes 'ClearMap.Visualization.Mesh' as an importable package[^1], 2026-01-15T00:52:57,292 but it is absent from setuptools' `packages` configuration. 2026-01-15T00:52:57,293 This leads to an ambiguous overall configuration. If you want to distribute this 2026-01-15T00:52:57,294 package, please make sure that 'ClearMap.Visualization.Mesh' is explicitly added 2026-01-15T00:52:57,294 to the `packages` configuration field. 2026-01-15T00:52:57,295 Alternatively, you can also rely on setuptools' discovery methods 2026-01-15T00:52:57,296 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-01-15T00:52:57,296 instead of `find_packages(...)`/`find:`). 2026-01-15T00:52:57,297 You can read more about "package discovery" on setuptools documentation page: 2026-01-15T00:52:57,298 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-01-15T00:52:57,300 If you don't want 'ClearMap.Visualization.Mesh' to be distributed and are 2026-01-15T00:52:57,300 already explicitly excluding 'ClearMap.Visualization.Mesh' via 2026-01-15T00:52:57,301 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-01-15T00:52:57,301 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-01-15T00:52:57,302 combination with a more fine grained `package-data` configuration. 2026-01-15T00:52:57,303 You can read more about "package data files" on setuptools documentation page: 2026-01-15T00:52:57,304 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-01-15T00:52:57,306 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-01-15T00:52:57,306 even if it does not contain any `.py` files. 2026-01-15T00:52:57,306 On the other hand, currently there is no concept of package data 2026-01-15T00:52:57,307 directory, all directories are treated like packages. 2026-01-15T00:52:57,307 ******************************************************************************** 2026-01-15T00:52:57,308 !! 2026-01-15T00:52:57,309 check.warn(importable) 2026-01-15T00:52:57,309 /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.Visualization.Qt' is absent from the `packages` configuration. 2026-01-15T00:52:57,309 !! 2026-01-15T00:52:57,310 ******************************************************************************** 2026-01-15T00:52:57,311 ############################ 2026-01-15T00:52:57,311 # Package would be ignored # 2026-01-15T00:52:57,312 ############################ 2026-01-15T00:52:57,312 Python recognizes 'ClearMap.Visualization.Qt' as an importable package[^1], 2026-01-15T00:52:57,313 but it is absent from setuptools' `packages` configuration. 2026-01-15T00:52:57,314 This leads to an ambiguous overall configuration. If you want to distribute this 2026-01-15T00:52:57,314 package, please make sure that 'ClearMap.Visualization.Qt' is explicitly added 2026-01-15T00:52:57,315 to the `packages` configuration field. 2026-01-15T00:52:57,316 Alternatively, you can also rely on setuptools' discovery methods 2026-01-15T00:52:57,316 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-01-15T00:52:57,317 instead of `find_packages(...)`/`find:`). 2026-01-15T00:52:57,318 You can read more about "package discovery" on setuptools documentation page: 2026-01-15T00:52:57,319 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-01-15T00:52:57,320 If you don't want 'ClearMap.Visualization.Qt' to be distributed and are 2026-01-15T00:52:57,320 already explicitly excluding 'ClearMap.Visualization.Qt' via 2026-01-15T00:52:57,321 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-01-15T00:52:57,322 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-01-15T00:52:57,322 combination with a more fine grained `package-data` configuration. 2026-01-15T00:52:57,323 You can read more about "package data files" on setuptools documentation page: 2026-01-15T00:52:57,324 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-01-15T00:52:57,325 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-01-15T00:52:57,326 even if it does not contain any `.py` files. 2026-01-15T00:52:57,326 On the other hand, currently there is no concept of package data 2026-01-15T00:52:57,327 directory, all directories are treated like packages. 2026-01-15T00:52:57,328 ******************************************************************************** 2026-01-15T00:52:57,329 !! 2026-01-15T00:52:57,329 check.warn(importable) 2026-01-15T00:52:57,330 /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.Visualization.Qt._Todo' is absent from the `packages` configuration. 2026-01-15T00:52:57,330 !! 2026-01-15T00:52:57,331 ******************************************************************************** 2026-01-15T00:52:57,332 ############################ 2026-01-15T00:52:57,333 # Package would be ignored # 2026-01-15T00:52:57,333 ############################ 2026-01-15T00:52:57,334 Python recognizes 'ClearMap.Visualization.Qt._Todo' as an importable package[^1], 2026-01-15T00:52:57,334 but it is absent from setuptools' `packages` configuration. 2026-01-15T00:52:57,335 This leads to an ambiguous overall configuration. If you want to distribute this 2026-01-15T00:52:57,335 package, please make sure that 'ClearMap.Visualization.Qt._Todo' is explicitly added 2026-01-15T00:52:57,336 to the `packages` configuration field. 2026-01-15T00:52:57,337 Alternatively, you can also rely on setuptools' discovery methods 2026-01-15T00:52:57,337 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-01-15T00:52:57,338 instead of `find_packages(...)`/`find:`). 2026-01-15T00:52:57,339 You can read more about "package discovery" on setuptools documentation page: 2026-01-15T00:52:57,339 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-01-15T00:52:57,340 If you don't want 'ClearMap.Visualization.Qt._Todo' to be distributed and are 2026-01-15T00:52:57,341 already explicitly excluding 'ClearMap.Visualization.Qt._Todo' via 2026-01-15T00:52:57,341 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-01-15T00:52:57,341 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-01-15T00:52:57,342 combination with a more fine grained `package-data` configuration. 2026-01-15T00:52:57,343 You can read more about "package data files" on setuptools documentation page: 2026-01-15T00:52:57,344 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-01-15T00:52:57,346 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-01-15T00:52:57,346 even if it does not contain any `.py` files. 2026-01-15T00:52:57,347 On the other hand, currently there is no concept of package data 2026-01-15T00:52:57,347 directory, all directories are treated like packages. 2026-01-15T00:52:57,348 ******************************************************************************** 2026-01-15T00:52:57,349 !! 2026-01-15T00:52:57,350 check.warn(importable) 2026-01-15T00:52:57,350 /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.Visualization.Qt._Todo.GUI' is absent from the `packages` configuration. 2026-01-15T00:52:57,351 !! 2026-01-15T00:52:57,352 ******************************************************************************** 2026-01-15T00:52:57,353 ############################ 2026-01-15T00:52:57,353 # Package would be ignored # 2026-01-15T00:52:57,354 ############################ 2026-01-15T00:52:57,355 Python recognizes 'ClearMap.Visualization.Qt._Todo.GUI' as an importable package[^1], 2026-01-15T00:52:57,355 but it is absent from setuptools' `packages` configuration. 2026-01-15T00:52:57,357 This leads to an ambiguous overall configuration. If you want to distribute this 2026-01-15T00:52:57,358 package, please make sure that 'ClearMap.Visualization.Qt._Todo.GUI' is explicitly added 2026-01-15T00:52:57,358 to the `packages` configuration field. 2026-01-15T00:52:57,361 Alternatively, you can also rely on setuptools' discovery methods 2026-01-15T00:52:57,361 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-01-15T00:52:57,362 instead of `find_packages(...)`/`find:`). 2026-01-15T00:52:57,363 You can read more about "package discovery" on setuptools documentation page: 2026-01-15T00:52:57,364 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-01-15T00:52:57,366 If you don't want 'ClearMap.Visualization.Qt._Todo.GUI' to be distributed and are 2026-01-15T00:52:57,367 already explicitly excluding 'ClearMap.Visualization.Qt._Todo.GUI' via 2026-01-15T00:52:57,368 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-01-15T00:52:57,368 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-01-15T00:52:57,369 combination with a more fine grained `package-data` configuration. 2026-01-15T00:52:57,370 You can read more about "package data files" on setuptools documentation page: 2026-01-15T00:52:57,371 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-01-15T00:52:57,373 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-01-15T00:52:57,374 even if it does not contain any `.py` files. 2026-01-15T00:52:57,375 On the other hand, currently there is no concept of package data 2026-01-15T00:52:57,375 directory, all directories are treated like packages. 2026-01-15T00:52:57,376 ******************************************************************************** 2026-01-15T00:52:57,377 !! 2026-01-15T00:52:57,379 check.warn(importable) 2026-01-15T00:52:57,379 /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.Visualization.Vispy' is absent from the `packages` configuration. 2026-01-15T00:52:57,380 !! 2026-01-15T00:52:57,381 ******************************************************************************** 2026-01-15T00:52:57,381 ############################ 2026-01-15T00:52:57,382 # Package would be ignored # 2026-01-15T00:52:57,382 ############################ 2026-01-15T00:52:57,383 Python recognizes 'ClearMap.Visualization.Vispy' as an importable package[^1], 2026-01-15T00:52:57,384 but it is absent from setuptools' `packages` configuration. 2026-01-15T00:52:57,385 This leads to an ambiguous overall configuration. If you want to distribute this 2026-01-15T00:52:57,386 package, please make sure that 'ClearMap.Visualization.Vispy' is explicitly added 2026-01-15T00:52:57,387 to the `packages` configuration field. 2026-01-15T00:52:57,389 Alternatively, you can also rely on setuptools' discovery methods 2026-01-15T00:52:57,389 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-01-15T00:52:57,390 instead of `find_packages(...)`/`find:`). 2026-01-15T00:52:57,391 You can read more about "package discovery" on setuptools documentation page: 2026-01-15T00:52:57,392 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-01-15T00:52:57,393 If you don't want 'ClearMap.Visualization.Vispy' to be distributed and are 2026-01-15T00:52:57,393 already explicitly excluding 'ClearMap.Visualization.Vispy' via 2026-01-15T00:52:57,394 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-01-15T00:52:57,395 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-01-15T00:52:57,395 combination with a more fine grained `package-data` configuration. 2026-01-15T00:52:57,397 You can read more about "package data files" on setuptools documentation page: 2026-01-15T00:52:57,398 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-01-15T00:52:57,400 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-01-15T00:52:57,400 even if it does not contain any `.py` files. 2026-01-15T00:52:57,401 On the other hand, currently there is no concept of package data 2026-01-15T00:52:57,402 directory, all directories are treated like packages. 2026-01-15T00:52:57,402 ******************************************************************************** 2026-01-15T00:52:57,404 !! 2026-01-15T00:52:57,404 check.warn(importable) 2026-01-15T00:52:57,405 /tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.Visualization._Todo' is absent from the `packages` configuration. 2026-01-15T00:52:57,405 !! 2026-01-15T00:52:57,406 ******************************************************************************** 2026-01-15T00:52:57,407 ############################ 2026-01-15T00:52:57,407 # Package would be ignored # 2026-01-15T00:52:57,408 ############################ 2026-01-15T00:52:57,408 Python recognizes 'ClearMap.Visualization._Todo' as an importable package[^1], 2026-01-15T00:52:57,409 but it is absent from setuptools' `packages` configuration. 2026-01-15T00:52:57,410 This leads to an ambiguous overall configuration. If you want to distribute this 2026-01-15T00:52:57,410 package, please make sure that 'ClearMap.Visualization._Todo' is explicitly added 2026-01-15T00:52:57,411 to the `packages` configuration field. 2026-01-15T00:52:57,412 Alternatively, you can also rely on setuptools' discovery methods 2026-01-15T00:52:57,413 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-01-15T00:52:57,413 instead of `find_packages(...)`/`find:`). 2026-01-15T00:52:57,414 You can read more about "package discovery" on setuptools documentation page: 2026-01-15T00:52:57,416 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-01-15T00:52:57,417 If you don't want 'ClearMap.Visualization._Todo' to be distributed and are 2026-01-15T00:52:57,417 already explicitly excluding 'ClearMap.Visualization._Todo' via 2026-01-15T00:52:57,418 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-01-15T00:52:57,418 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-01-15T00:52:57,419 combination with a more fine grained `package-data` configuration. 2026-01-15T00:52:57,420 You can read more about "package data files" on setuptools documentation page: 2026-01-15T00:52:57,421 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-01-15T00:52:57,422 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-01-15T00:52:57,423 even if it does not contain any `.py` files. 2026-01-15T00:52:57,423 On the other hand, currently there is no concept of package data 2026-01-15T00:52:57,424 directory, all directories are treated like packages. 2026-01-15T00:52:57,425 ******************************************************************************** 2026-01-15T00:52:57,426 !! 2026-01-15T00:52:57,426 check.warn(importable) 2026-01-15T00:52:57,427 creating build/lib.linux-armv7l-cpython-311/ClearMap/Alignment/Stitching/_Todo 2026-01-15T00:52:57,427 copying ClearMap/Alignment/Stitching/_Todo/StitchingRigid.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Alignment/Stitching/_Todo 2026-01-15T00:52:57,428 copying ClearMap/Alignment/Stitching/_Todo/StitchingTera.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Alignment/Stitching/_Todo 2026-01-15T00:52:57,428 creating build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Measurements/_Todo 2026-01-15T00:52:57,429 copying ClearMap/Analysis/Measurements/_Todo/Orientation.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Measurements/_Todo 2026-01-15T00:52:57,430 copying ClearMap/Analysis/Measurements/_Todo/OrientationCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Measurements/_Todo 2026-01-15T00:52:57,430 creating build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/MachineLearning 2026-01-15T00:52:57,431 copying ClearMap/ImageProcessing/MachineLearning/Torch.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/MachineLearning 2026-01-15T00:52:57,431 copying ClearMap/ImageProcessing/MachineLearning/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/MachineLearning 2026-01-15T00:52:57,432 creating build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/MachineLearning/VesselFilling 2026-01-15T00:52:57,433 copying ClearMap/ImageProcessing/MachineLearning/VesselFilling/VesselFilling.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/MachineLearning/VesselFilling 2026-01-15T00:52:57,433 copying ClearMap/ImageProcessing/MachineLearning/VesselFilling/VesselFillingNetwork.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/MachineLearning/VesselFilling 2026-01-15T00:52:57,434 copying ClearMap/ImageProcessing/MachineLearning/VesselFilling/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/MachineLearning/VesselFilling 2026-01-15T00:52:57,434 creating build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/MachineLearning/VesselFilling/Training 2026-01-15T00:52:57,435 copying ClearMap/ImageProcessing/MachineLearning/VesselFilling/Training/class_balancing_loss.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/MachineLearning/VesselFilling/Training 2026-01-15T00:52:57,435 copying ClearMap/ImageProcessing/MachineLearning/VesselFilling/Training/contrast_loss.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/MachineLearning/VesselFilling/Training 2026-01-15T00:52:57,436 copying ClearMap/ImageProcessing/MachineLearning/VesselFilling/Training/dataset.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/MachineLearning/VesselFilling/Training 2026-01-15T00:52:57,436 copying ClearMap/ImageProcessing/MachineLearning/VesselFilling/Training/visualize.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/MachineLearning/VesselFilling/Training 2026-01-15T00:52:57,437 copying ClearMap/ImageProcessing/Binary/FillingCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Binary 2026-01-15T00:52:57,437 copying ClearMap/ImageProcessing/Clipping/ClippingCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Clipping 2026-01-15T00:52:57,438 copying ClearMap/ImageProcessing/Differentiation/HessianCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Differentiation 2026-01-15T00:52:57,439 copying ClearMap/ImageProcessing/Filter/Rank/BilateralCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank 2026-01-15T00:52:57,439 copying ClearMap/ImageProcessing/Filter/Rank/ParametricCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank 2026-01-15T00:52:57,440 copying ClearMap/ImageProcessing/Filter/Rank/PercentileCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank 2026-01-15T00:52:57,441 copying ClearMap/ImageProcessing/Filter/Rank/RankCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank 2026-01-15T00:52:57,441 copying ClearMap/ImageProcessing/Filter/Rank/RankCoreCode.pxd -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank 2026-01-15T00:52:57,442 copying ClearMap/ImageProcessing/Filter/Rank/RankCoreCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank 2026-01-15T00:52:57,442 creating build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank/_Todo/RankInterpolation 2026-01-15T00:52:57,443 copying ClearMap/ImageProcessing/Filter/Rank/_Todo/RankInterpolation/RankCoreCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank/_Todo/RankInterpolation 2026-01-15T00:52:57,443 copying ClearMap/ImageProcessing/Filter/Rank/_Todo/RankInterpolation/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank/_Todo/RankInterpolation 2026-01-15T00:52:57,444 copying ClearMap/ImageProcessing/Thresholding/ThresholdingCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Thresholding 2026-01-15T00:52:57,445 creating build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Thresholding/_Todo/HysteresisThresholding 2026-01-15T00:52:57,445 copying ClearMap/ImageProcessing/Thresholding/_Todo/HysteresisThresholding/HysteresisThresholding.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Thresholding/_Todo/HysteresisThresholding 2026-01-15T00:52:57,446 copying ClearMap/ImageProcessing/Thresholding/_Todo/HysteresisThresholding/HysteresisThresholdingCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Thresholding/_Todo/HysteresisThresholding 2026-01-15T00:52:57,446 copying ClearMap/ImageProcessing/Thresholding/_Todo/HysteresisThresholding/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Thresholding/_Todo/HysteresisThresholding 2026-01-15T00:52:57,447 creating build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Thresholding/_Todo/SeededThresholding 2026-01-15T00:52:57,447 copying ClearMap/ImageProcessing/Thresholding/_Todo/SeededThresholding/SeededThresholding.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Thresholding/_Todo/SeededThresholding 2026-01-15T00:52:57,448 copying ClearMap/ImageProcessing/Thresholding/_Todo/SeededThresholding/SeededThresholdingCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Thresholding/_Todo/SeededThresholding 2026-01-15T00:52:57,448 copying ClearMap/ImageProcessing/Thresholding/_Todo/SeededThresholding/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Thresholding/_Todo/SeededThresholding 2026-01-15T00:52:57,449 copying ClearMap/ImageProcessing/Tracing/TraceCode.hpp -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Tracing 2026-01-15T00:52:57,450 copying ClearMap/ImageProcessing/Tracing/TraceCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Tracing 2026-01-15T00:52:57,450 copying ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing 2026-01-15T00:52:57,451 copying ClearMap/ParallelProcessing/DataProcessing/ConvolvePointListCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing 2026-01-15T00:52:57,451 copying ClearMap/ParallelProcessing/DataProcessing/DevolvePointListCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing 2026-01-15T00:52:57,452 copying ClearMap/ParallelProcessing/DataProcessing/MeasurePointListCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing 2026-01-15T00:52:57,452 copying ClearMap/ParallelProcessing/DataProcessing/StatisticsPointListCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing 2026-01-15T00:52:57,453 creating build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing/_Old 2026-01-15T00:52:57,453 copying ClearMap/ParallelProcessing/DataProcessing/_Old/ArrayIOCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing/_Old 2026-01-15T00:52:57,454 copying ClearMap/ParallelProcessing/DataProcessing/_Old/ArrayProcessing.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing/_Old 2026-01-15T00:52:57,455 copying ClearMap/ParallelProcessing/DataProcessing/_Old/ArrayProcessingCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing/_Old 2026-01-15T00:52:57,455 copying ClearMap/ParallelProcessing/DataProcessing/_Old/ArrayProcessingCode_New.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing/_Old 2026-01-15T00:52:57,456 copying ClearMap/ParallelProcessing/DataProcessing/_Old/ArrayProcessingCode_New_2.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing/_Old 2026-01-15T00:52:57,456 copying ClearMap/ParallelProcessing/DataProcessing/_Old/ArrayProcessing_New.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing/_Old 2026-01-15T00:52:57,457 copying ClearMap/ParallelProcessing/DataProcessing/_Old/ArrayProcessing_New_2.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing/_Old 2026-01-15T00:52:57,458 copying ClearMap/ParallelProcessing/DataProcessing/_Old/ArraylIO.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing/_Old 2026-01-15T00:52:57,458 copying ClearMap/ParallelProcessing/DataProcessing/_Old/LargeData.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing/_Old 2026-01-15T00:52:57,459 copying ClearMap/ParallelProcessing/DataProcessing/_Old/LargeDataCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing/_Old 2026-01-15T00:52:57,459 copying ClearMap/ParallelProcessing/DataProcessing/_Old/LineIteration.hpp -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing/_Old 2026-01-15T00:52:57,459 copying ClearMap/ParallelProcessing/DataProcessing/_Old/MeasureExpression.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing/_Old 2026-01-15T00:52:57,460 copying ClearMap/ParallelProcessing/DataProcessing/_Old/MeasureExpressionCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing/_Old 2026-01-15T00:52:57,460 copying ClearMap/ParallelProcessing/DataProcessing/_Old/cython_correlate.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing/_Old 2026-01-15T00:52:57,461 copying ClearMap/ParallelProcessing/DataProcessing/_Old/setup.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing/_Old 2026-01-15T00:52:57,462 creating build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF 2026-01-15T00:52:57,462 copying ClearMap/GF_extras/clearmap1_GF/IO_GF.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF 2026-01-15T00:52:57,463 copying ClearMap/GF_extras/clearmap1_GF/ParameterTools.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF 2026-01-15T00:52:57,463 copying ClearMap/GF_extras/clearmap1_GF/ProcessWriter.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF 2026-01-15T00:52:57,464 copying ClearMap/GF_extras/clearmap1_GF/RAW.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF 2026-01-15T00:52:57,464 copying ClearMap/GF_extras/clearmap1_GF/Settings.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF 2026-01-15T00:52:57,465 copying ClearMap/GF_extras/clearmap1_GF/TIF.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF 2026-01-15T00:52:57,466 copying ClearMap/GF_extras/clearmap1_GF/clearmap1_parameter_file.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF 2026-01-15T00:52:57,467 creating build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/Analysis 2026-01-15T00:52:57,467 copying ClearMap/GF_extras/clearmap1_GF/Analysis/Voxelization.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/Analysis 2026-01-15T00:52:57,468 copying ClearMap/GF_extras/clearmap1_GF/Analysis/VoxelizationCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/Analysis 2026-01-15T00:52:57,468 copying ClearMap/GF_extras/clearmap1_GF/Analysis/Voxelization_GF.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/Analysis 2026-01-15T00:52:57,469 creating build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing 2026-01-15T00:52:57,470 copying ClearMap/GF_extras/clearmap1_GF/ImageProcessing/BackgroundRemoval.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing 2026-01-15T00:52:57,470 copying ClearMap/GF_extras/clearmap1_GF/ImageProcessing/CellDetection.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing 2026-01-15T00:52:57,471 copying ClearMap/GF_extras/clearmap1_GF/ImageProcessing/CellDetection_GF.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing 2026-01-15T00:52:57,471 copying ClearMap/GF_extras/clearmap1_GF/ImageProcessing/CellSizeDetection.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing 2026-01-15T00:52:57,472 copying ClearMap/GF_extras/clearmap1_GF/ImageProcessing/GreyReconstruction.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing 2026-01-15T00:52:57,473 copying ClearMap/GF_extras/clearmap1_GF/ImageProcessing/IlluminationCorrection.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing 2026-01-15T00:52:57,473 copying ClearMap/GF_extras/clearmap1_GF/ImageProcessing/ImageStatistics.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing 2026-01-15T00:52:57,473 copying ClearMap/GF_extras/clearmap1_GF/ImageProcessing/MaximaDetection.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing 2026-01-15T00:52:57,474 copying ClearMap/GF_extras/clearmap1_GF/ImageProcessing/SpotDetection.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing 2026-01-15T00:52:57,474 copying ClearMap/GF_extras/clearmap1_GF/ImageProcessing/StackProcessing.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing 2026-01-15T00:52:57,475 copying ClearMap/GF_extras/clearmap1_GF/ImageProcessing/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing 2026-01-15T00:52:57,475 copying ClearMap/GF_extras/clearmap1_GF/ImageProcessing/parallel_processing_GF.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing 2026-01-15T00:52:57,476 copying ClearMap/GF_extras/clearmap1_GF/ImageProcessing/sequential_processing_GF.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing 2026-01-15T00:52:57,476 copying ClearMap/GF_extras/clearmap1_GF/ImageProcessing/sequential_processing_GF_v2.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing 2026-01-15T00:52:57,477 copying ClearMap/GF_extras/clearmap1_GF/ImageProcessing/spot_detection_processing_GF.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing 2026-01-15T00:52:57,478 creating build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing/Filter 2026-01-15T00:52:57,478 copying ClearMap/GF_extras/clearmap1_GF/ImageProcessing/Filter/Convolution.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing/Filter 2026-01-15T00:52:57,479 copying ClearMap/GF_extras/clearmap1_GF/ImageProcessing/Filter/DoGFilter.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing/Filter 2026-01-15T00:52:57,480 copying ClearMap/GF_extras/clearmap1_GF/ImageProcessing/Filter/FilterKernel.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing/Filter 2026-01-15T00:52:57,481 copying ClearMap/GF_extras/clearmap1_GF/ImageProcessing/Filter/LinearFilter.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing/Filter 2026-01-15T00:52:57,481 copying ClearMap/GF_extras/clearmap1_GF/ImageProcessing/Filter/StructureElement.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing/Filter 2026-01-15T00:52:57,482 copying ClearMap/GF_extras/clearmap1_GF/ImageProcessing/Filter/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing/Filter 2026-01-15T00:52:57,482 creating build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Matplotlib 2026-01-15T00:52:57,483 copying ClearMap/Visualization/Matplotlib/PlotUtils.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Matplotlib 2026-01-15T00:52:57,484 copying ClearMap/Visualization/Matplotlib/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Matplotlib 2026-01-15T00:52:57,484 creating build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Mesh 2026-01-15T00:52:57,485 copying ClearMap/Visualization/Mesh/IcoSphere.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Mesh 2026-01-15T00:52:57,486 copying ClearMap/Visualization/Mesh/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Mesh 2026-01-15T00:52:57,487 creating build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Qt 2026-01-15T00:52:57,487 copying ClearMap/Visualization/Qt/DataViewer.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Qt 2026-01-15T00:52:57,488 copying ClearMap/Visualization/Qt/Plot3d.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Qt 2026-01-15T00:52:57,488 copying ClearMap/Visualization/Qt/Utils.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Qt 2026-01-15T00:52:57,489 copying ClearMap/Visualization/Qt/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Qt 2026-01-15T00:52:57,489 creating build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Qt/_Todo 2026-01-15T00:52:57,490 copying ClearMap/Visualization/Qt/_Todo/ImageItem.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Qt/_Todo 2026-01-15T00:52:57,491 creating build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Qt/_Todo/GUI 2026-01-15T00:52:57,491 copying ClearMap/Visualization/Qt/_Todo/GUI/DataViewerSimple.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Qt/_Todo/GUI 2026-01-15T00:52:57,492 copying ClearMap/Visualization/Qt/_Todo/GUI/FileDialog.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Qt/_Todo/GUI 2026-01-15T00:52:57,492 copying ClearMap/Visualization/Qt/_Todo/GUI/GUI.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Qt/_Todo/GUI 2026-01-15T00:52:57,493 copying ClearMap/Visualization/Qt/_Todo/GUI/ImageProcessing.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Qt/_Todo/GUI 2026-01-15T00:52:57,494 copying ClearMap/Visualization/Qt/_Todo/GUI/Parameter.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Qt/_Todo/GUI 2026-01-15T00:52:57,494 copying ClearMap/Visualization/Qt/_Todo/GUI/ParameterItems.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Qt/_Todo/GUI 2026-01-15T00:52:57,495 copying ClearMap/Visualization/Qt/_Todo/GUI/PipelineViewer.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Qt/_Todo/GUI 2026-01-15T00:52:57,496 copying ClearMap/Visualization/Qt/_Todo/GUI/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Qt/_Todo/GUI 2026-01-15T00:52:57,497 creating build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Vispy 2026-01-15T00:52:57,497 copying ClearMap/Visualization/Vispy/GraphVisual.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Vispy 2026-01-15T00:52:57,498 copying ClearMap/Visualization/Vispy/Plot3d.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Vispy 2026-01-15T00:52:57,499 copying ClearMap/Visualization/Vispy/PlotGraph3d.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Vispy 2026-01-15T00:52:57,500 copying ClearMap/Visualization/Vispy/TurntableCamera.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Vispy 2026-01-15T00:52:57,500 copying ClearMap/Visualization/Vispy/VolumeVisual.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Vispy 2026-01-15T00:52:57,501 copying ClearMap/Visualization/Vispy/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Vispy 2026-01-15T00:52:57,502 creating build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/_Todo 2026-01-15T00:52:57,502 copying ClearMap/Visualization/_Todo/Plot.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/_Todo 2026-01-15T00:52:57,503 copying ClearMap/Visualization/_Todo/plot_utils.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/_Todo 2026-01-15T00:52:57,504 running build_ext 2026-01-15T00:52:57,505 building 'ClearMap.ImageProcessing.Binary.FillingCode' extension 2026-01-15T00:52:57,505 creating build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Binary 2026-01-15T00:52:57,506 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/tmp/pip-wheel-3vlnwnq6/clearmap-nmr_0d221e9b85064e2fab7c1e2e7a7662f3 -I/usr/include/python3.11 -c ClearMap/ImageProcessing/Binary/FillingCode.cpp -o build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Binary/FillingCode.o -O3 -march=native -fopenmp -Wno-unused-variable -Wno-maybe-uninitialized -Wno-array-bounds 2026-01-15T00:53:18,811 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Binary/FillingCode.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Binary/FillingCode.cpython-311-arm-linux-gnueabihf.so -fopenmp 2026-01-15T00:53:19,120 building 'ClearMap.ImageProcessing.Clipping.ClippingCode' extension 2026-01-15T00:53:19,120 creating build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Clipping 2026-01-15T00:53:19,121 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/tmp/pip-wheel-3vlnwnq6/clearmap-nmr_0d221e9b85064e2fab7c1e2e7a7662f3 -I/usr/include/python3.11 -c ClearMap/ImageProcessing/Clipping/ClippingCode.cpp -o build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Clipping/ClippingCode.o -O3 -march=native -fopenmp -Wno-unused-variable -Wno-maybe-uninitialized -Wno-array-bounds 2026-01-15T00:54:13,295 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Clipping/ClippingCode.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Clipping/ClippingCode.cpython-311-arm-linux-gnueabihf.so -fopenmp 2026-01-15T00:54:13,541 building 'ClearMap.ImageProcessing.Differentiation.HessianCode' extension 2026-01-15T00:54:13,542 creating build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Differentiation 2026-01-15T00:54:13,543 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/tmp/pip-wheel-3vlnwnq6/clearmap-nmr_0d221e9b85064e2fab7c1e2e7a7662f3 -I/usr/include/python3.11 -c ClearMap/ImageProcessing/Differentiation/HessianCode.cpp -o build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Differentiation/HessianCode.o -O3 -march=native -fopenmp -Wno-unused-variable -Wno-maybe-uninitialized -Wno-array-bounds 2026-01-15T00:55:22,699 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Differentiation/HessianCode.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Differentiation/HessianCode.cpython-311-arm-linux-gnueabihf.so -fopenmp 2026-01-15T00:55:23,028 building 'ClearMap.ImageProcessing.Filter.Rank.RankCode' extension 2026-01-15T00:55:23,029 creating build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank 2026-01-15T00:55:23,031 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/tmp/pip-wheel-3vlnwnq6/clearmap-nmr_0d221e9b85064e2fab7c1e2e7a7662f3 -I/usr/include/python3.11 -c ClearMap/ImageProcessing/Filter/Rank/RankCode.cpp -o build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank/RankCode.o -O3 -march=native -fopenmp -Wno-unused-variable -Wno-maybe-uninitialized -Wno-array-bounds 2026-01-15T01:00:50,585 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank/RankCode.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank/RankCode.cpython-311-arm-linux-gnueabihf.so -fopenmp 2026-01-15T01:00:51,271 building 'ClearMap.ImageProcessing.Filter.Rank.PercentileCode' extension 2026-01-15T01:00:51,272 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/tmp/pip-wheel-3vlnwnq6/clearmap-nmr_0d221e9b85064e2fab7c1e2e7a7662f3 -I/usr/include/python3.11 -c ClearMap/ImageProcessing/Filter/Rank/PercentileCode.cpp -o build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank/PercentileCode.o -O3 -march=native -fopenmp -Wno-unused-variable -Wno-maybe-uninitialized -Wno-array-bounds 2026-01-15T01:03:28,119 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank/PercentileCode.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank/PercentileCode.cpython-311-arm-linux-gnueabihf.so -fopenmp 2026-01-15T01:03:28,534 building 'ClearMap.ImageProcessing.Filter.Rank.BilateralCode' extension 2026-01-15T01:03:28,536 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/tmp/pip-wheel-3vlnwnq6/clearmap-nmr_0d221e9b85064e2fab7c1e2e7a7662f3 -I/usr/include/python3.11 -c ClearMap/ImageProcessing/Filter/Rank/BilateralCode.cpp -o build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank/BilateralCode.o -O3 -march=native -fopenmp -Wno-unused-variable -Wno-maybe-uninitialized -Wno-array-bounds 2026-01-15T01:04:55,825 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank/BilateralCode.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank/BilateralCode.cpython-311-arm-linux-gnueabihf.so -fopenmp 2026-01-15T01:04:56,118 building 'ClearMap.ImageProcessing.Filter.Rank.ParametricCode' extension 2026-01-15T01:04:56,119 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/tmp/pip-wheel-3vlnwnq6/clearmap-nmr_0d221e9b85064e2fab7c1e2e7a7662f3 -I/usr/include/python3.11 -c ClearMap/ImageProcessing/Filter/Rank/ParametricCode.cpp -o build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank/ParametricCode.o -O3 -march=native -fopenmp -Wno-unused-variable -Wno-maybe-uninitialized -Wno-array-bounds 2026-01-15T01:04:59,962 ClearMap/ImageProcessing/Filter/Rank/ParametricCode.cpp: In function ‘void __pyx_fuse_0_0_0__pyx_f_8ClearMap_15ImageProcessing_6Filter_4Rank_14ParametricCode_kernel_lsac(__pyx_t_5numpy_uint8_t*, Py_ssize_t*, Py_ssize_t, __pyx_t_5numpy_uint8_t, Py_ssize_t, Py_ssize_t*, double*)’: 2026-01-15T01:04:59,963 ClearMap/ImageProcessing/Filter/Rank/ParametricCode.cpp:27822:44: warning: format ‘%f’ expects argument of type ‘double’, but argument 3 has type ‘int’ [-Wformat=] 2026-01-15T01:04:59,963 27822 | (void)(printf(((char *)"value,sink=%f,%f\n"), __pyx_v_total, (__pyx_v_sink[0]))); 2026-01-15T01:04:59,964 | ~^ ~~~~~~~~~~~~~~~~~ 2026-01-15T01:04:59,965 | | | 2026-01-15T01:04:59,965 | double int 2026-01-15T01:04:59,966 | %d 2026-01-15T01:04:59,970 ClearMap/ImageProcessing/Filter/Rank/ParametricCode.cpp: In function ‘void __pyx_fuse_0_0_1__pyx_f_8ClearMap_15ImageProcessing_6Filter_4Rank_14ParametricCode_kernel_lsac(__pyx_t_5numpy_uint8_t*, Py_ssize_t*, Py_ssize_t, __pyx_t_5numpy_uint16_t, Py_ssize_t, Py_ssize_t*, double*)’: 2026-01-15T01:04:59,971 ClearMap/ImageProcessing/Filter/Rank/ParametricCode.cpp:28531:44: warning: format ‘%f’ expects argument of type ‘double’, but argument 3 has type ‘int’ [-Wformat=] 2026-01-15T01:04:59,972 28531 | (void)(printf(((char *)"value,sink=%f,%f\n"), __pyx_v_total, (__pyx_v_sink[0]))); 2026-01-15T01:04:59,972 | ~^ ~~~~~~~~~~~~~~~~~ 2026-01-15T01:04:59,973 | | | 2026-01-15T01:04:59,973 | double int 2026-01-15T01:04:59,974 | %d 2026-01-15T01:04:59,978 ClearMap/ImageProcessing/Filter/Rank/ParametricCode.cpp: In function ‘void __pyx_fuse_0_0_2__pyx_f_8ClearMap_15ImageProcessing_6Filter_4Rank_14ParametricCode_kernel_lsac(__pyx_t_5numpy_uint8_t*, Py_ssize_t*, Py_ssize_t, __pyx_t_5numpy_int64_t, Py_ssize_t, Py_ssize_t*, double*)’: 2026-01-15T01:04:59,979 ClearMap/ImageProcessing/Filter/Rank/ParametricCode.cpp:29240:44: warning: format ‘%f’ expects argument of type ‘double’, but argument 3 has type ‘int’ [-Wformat=] 2026-01-15T01:04:59,980 29240 | (void)(printf(((char *)"value,sink=%f,%f\n"), __pyx_v_total, (__pyx_v_sink[0]))); 2026-01-15T01:04:59,981 | ~^ ~~~~~~~~~~~~~~~~~ 2026-01-15T01:04:59,981 | | | 2026-01-15T01:04:59,982 | double int 2026-01-15T01:04:59,983 | %d 2026-01-15T01:04:59,987 ClearMap/ImageProcessing/Filter/Rank/ParametricCode.cpp: In function ‘void __pyx_fuse_1_0_0__pyx_f_8ClearMap_15ImageProcessing_6Filter_4Rank_14ParametricCode_kernel_lsac(__pyx_t_5numpy_uint16_t*, Py_ssize_t*, Py_ssize_t, __pyx_t_5numpy_uint8_t, Py_ssize_t, Py_ssize_t*, double*)’: 2026-01-15T01:04:59,988 ClearMap/ImageProcessing/Filter/Rank/ParametricCode.cpp:29949:44: warning: format ‘%f’ expects argument of type ‘double’, but argument 3 has type ‘int’ [-Wformat=] 2026-01-15T01:04:59,988 29949 | (void)(printf(((char *)"value,sink=%f,%f\n"), __pyx_v_total, (__pyx_v_sink[0]))); 2026-01-15T01:04:59,989 | ~^ ~~~~~~~~~~~~~~~~~ 2026-01-15T01:04:59,989 | | | 2026-01-15T01:04:59,990 | double int 2026-01-15T01:04:59,991 | %d 2026-01-15T01:04:59,995 ClearMap/ImageProcessing/Filter/Rank/ParametricCode.cpp: In function ‘void __pyx_fuse_1_0_1__pyx_f_8ClearMap_15ImageProcessing_6Filter_4Rank_14ParametricCode_kernel_lsac(__pyx_t_5numpy_uint16_t*, Py_ssize_t*, Py_ssize_t, __pyx_t_5numpy_uint16_t, Py_ssize_t, Py_ssize_t*, double*)’: 2026-01-15T01:04:59,996 ClearMap/ImageProcessing/Filter/Rank/ParametricCode.cpp:30658:44: warning: format ‘%f’ expects argument of type ‘double’, but argument 3 has type ‘int’ [-Wformat=] 2026-01-15T01:04:59,996 30658 | (void)(printf(((char *)"value,sink=%f,%f\n"), __pyx_v_total, (__pyx_v_sink[0]))); 2026-01-15T01:04:59,997 | ~^ ~~~~~~~~~~~~~~~~~ 2026-01-15T01:04:59,998 | | | 2026-01-15T01:04:59,998 | double int 2026-01-15T01:04:59,999 | %d 2026-01-15T01:05:00,005 ClearMap/ImageProcessing/Filter/Rank/ParametricCode.cpp: In function ‘void __pyx_fuse_1_0_2__pyx_f_8ClearMap_15ImageProcessing_6Filter_4Rank_14ParametricCode_kernel_lsac(__pyx_t_5numpy_uint16_t*, Py_ssize_t*, Py_ssize_t, __pyx_t_5numpy_int64_t, Py_ssize_t, Py_ssize_t*, double*)’: 2026-01-15T01:05:00,006 ClearMap/ImageProcessing/Filter/Rank/ParametricCode.cpp:31367:44: warning: format ‘%f’ expects argument of type ‘double’, but argument 3 has type ‘int’ [-Wformat=] 2026-01-15T01:05:00,006 31367 | (void)(printf(((char *)"value,sink=%f,%f\n"), __pyx_v_total, (__pyx_v_sink[0]))); 2026-01-15T01:05:00,007 | ~^ ~~~~~~~~~~~~~~~~~ 2026-01-15T01:05:00,007 | | | 2026-01-15T01:05:00,008 | double int 2026-01-15T01:05:00,008 | %d 2026-01-15T01:05:00,015 ClearMap/ImageProcessing/Filter/Rank/ParametricCode.cpp: In function ‘void __pyx_fuse_2_0_0__pyx_f_8ClearMap_15ImageProcessing_6Filter_4Rank_14ParametricCode_kernel_lsac(__pyx_t_5numpy_int64_t*, Py_ssize_t*, Py_ssize_t, __pyx_t_5numpy_uint8_t, Py_ssize_t, Py_ssize_t*, double*)’: 2026-01-15T01:05:00,016 ClearMap/ImageProcessing/Filter/Rank/ParametricCode.cpp:32076:44: warning: format ‘%f’ expects argument of type ‘double’, but argument 3 has type ‘__pyx_t_5numpy_int64_t’ {aka ‘long long int’} [-Wformat=] 2026-01-15T01:05:00,017 32076 | (void)(printf(((char *)"value,sink=%f,%f\n"), __pyx_v_total, (__pyx_v_sink[0]))); 2026-01-15T01:05:00,017 | ~^ ~~~~~~~~~~~~~~~~~ 2026-01-15T01:05:00,018 | | | 2026-01-15T01:05:00,019 | double __pyx_t_5numpy_int64_t {aka long long int} 2026-01-15T01:05:00,019 | %lld 2026-01-15T01:05:00,025 ClearMap/ImageProcessing/Filter/Rank/ParametricCode.cpp: In function ‘void __pyx_fuse_2_0_1__pyx_f_8ClearMap_15ImageProcessing_6Filter_4Rank_14ParametricCode_kernel_lsac(__pyx_t_5numpy_int64_t*, Py_ssize_t*, Py_ssize_t, __pyx_t_5numpy_uint16_t, Py_ssize_t, Py_ssize_t*, double*)’: 2026-01-15T01:05:00,026 ClearMap/ImageProcessing/Filter/Rank/ParametricCode.cpp:32785:44: warning: format ‘%f’ expects argument of type ‘double’, but argument 3 has type ‘__pyx_t_5numpy_int64_t’ {aka ‘long long int’} [-Wformat=] 2026-01-15T01:05:00,026 32785 | (void)(printf(((char *)"value,sink=%f,%f\n"), __pyx_v_total, (__pyx_v_sink[0]))); 2026-01-15T01:05:00,028 | ~^ ~~~~~~~~~~~~~~~~~ 2026-01-15T01:05:00,028 | | | 2026-01-15T01:05:00,029 | double __pyx_t_5numpy_int64_t {aka long long int} 2026-01-15T01:05:00,029 | %lld 2026-01-15T01:05:00,035 ClearMap/ImageProcessing/Filter/Rank/ParametricCode.cpp: In function ‘void __pyx_fuse_2_0_2__pyx_f_8ClearMap_15ImageProcessing_6Filter_4Rank_14ParametricCode_kernel_lsac(__pyx_t_5numpy_int64_t*, Py_ssize_t*, Py_ssize_t, __pyx_t_5numpy_int64_t, Py_ssize_t, Py_ssize_t*, double*)’: 2026-01-15T01:05:00,035 ClearMap/ImageProcessing/Filter/Rank/ParametricCode.cpp:33494:44: warning: format ‘%f’ expects argument of type ‘double’, but argument 3 has type ‘__pyx_t_5numpy_int64_t’ {aka ‘long long int’} [-Wformat=] 2026-01-15T01:05:00,036 33494 | (void)(printf(((char *)"value,sink=%f,%f\n"), __pyx_v_total, (__pyx_v_sink[0]))); 2026-01-15T01:05:00,037 | ~^ ~~~~~~~~~~~~~~~~~ 2026-01-15T01:05:00,037 | | | 2026-01-15T01:05:00,038 | double __pyx_t_5numpy_int64_t {aka long long int} 2026-01-15T01:05:00,038 | %lld 2026-01-15T01:06:12,751 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank/ParametricCode.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank/ParametricCode.cpython-311-arm-linux-gnueabihf.so -fopenmp 2026-01-15T01:06:13,046 building 'ClearMap.ImageProcessing.Thresholding.ThresholdingCode' extension 2026-01-15T01:06:13,048 creating build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Thresholding 2026-01-15T01:06:13,049 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/tmp/pip-wheel-3vlnwnq6/clearmap-nmr_0d221e9b85064e2fab7c1e2e7a7662f3 -I/usr/include/python3.11 -c ClearMap/ImageProcessing/Thresholding/ThresholdingCode.cpp -o build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Thresholding/ThresholdingCode.o -O3 -march=native -fopenmp -Wno-unused-variable -Wno-maybe-uninitialized -Wno-array-bounds 2026-01-15T01:07:50,819 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Thresholding/ThresholdingCode.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Thresholding/ThresholdingCode.cpython-311-arm-linux-gnueabihf.so -fopenmp 2026-01-15T01:07:51,236 building 'ClearMap.ImageProcessing.Tracing.TraceCode' extension 2026-01-15T01:07:51,237 creating build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Tracing 2026-01-15T01:07:51,238 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -IClearMap/ImageProcessing/Tracing -I/tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/tmp/pip-wheel-3vlnwnq6/clearmap-nmr_0d221e9b85064e2fab7c1e2e7a7662f3 -I/usr/include/python3.11 -c ClearMap/ImageProcessing/Tracing/TraceCode.cpp -o build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Tracing/TraceCode.o -O3 -march=native -fopenmp -Wno-unused-variable -Wno-maybe-uninitialized -Wno-array-bounds 2026-01-15T01:07:53,668 In file included from ClearMap/ImageProcessing/Tracing/TraceCode.cpp:818: 2026-01-15T01:07:53,669 ClearMap/ImageProcessing/Tracing/TraceCode.hpp: In member function ‘std::vector<_Tp> Point3D::toVector() const’: 2026-01-15T01:07:53,669 ClearMap/ImageProcessing/Tracing/TraceCode.hpp:78:18: warning: empty parentheses were disambiguated as a function declaration [-Wvexing-parse] 2026-01-15T01:07:53,670 78 | vector v(); 2026-01-15T01:07:53,670 | ^~ 2026-01-15T01:08:31,385 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Tracing/TraceCode.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Tracing/TraceCode.cpython-311-arm-linux-gnueabihf.so -fopenmp 2026-01-15T01:08:31,901 building 'ClearMap.ParallelProcessing.DataProcessing.ArrayProcessingCode' extension 2026-01-15T01:08:31,902 creating build/temp.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing 2026-01-15T01:08:31,903 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/tmp/pip-wheel-3vlnwnq6/clearmap-nmr_0d221e9b85064e2fab7c1e2e7a7662f3 -I/usr/include/python3.11 -c ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp -o build/temp.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.o -O3 -march=native -fopenmp -Wno-unused-variable -Wno-maybe-uninitialized -Wno-array-bounds 2026-01-15T01:08:59,914 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp: In function ‘_ZL95__pyx_fuse_6__pyx_f_8ClearMap_18ParallelProcessing_14DataProcessing_19ArrayProcessingCode_write18__Pyx_memviewslicePciiii._omp_fn.0’: 2026-01-15T01:08:59,915 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:138475:33: warning: pointer may be used after ‘int fclose(FILE*)’ [-Wuse-after-free] 2026-01-15T01:08:59,916 138475 | #pragma omp for lastprivate(__pyx_v_fid) firstprivate(__pyx_v_p) lastprivate(__pyx_v_p) schedule(guided) 2026-01-15T01:08:59,916 | ^~~ 2026-01-15T01:08:59,917 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:138520:46: note: call to ‘int fclose(FILE*)’ here 2026-01-15T01:08:59,917 138520 | (void)(fclose(__pyx_v_fid)); 2026-01-15T01:08:59,918 | ~~~~~~~^~~~~~~~~~~~~~ 2026-01-15T01:08:59,997 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp: In function ‘_ZL95__pyx_fuse_5__pyx_f_8ClearMap_18ParallelProcessing_14DataProcessing_19ArrayProcessingCode_write18__Pyx_memviewslicePciiii._omp_fn.0’: 2026-01-15T01:08:59,998 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:137967:33: warning: pointer may be used after ‘int fclose(FILE*)’ [-Wuse-after-free] 2026-01-15T01:08:59,999 137967 | #pragma omp for lastprivate(__pyx_v_fid) firstprivate(__pyx_v_p) lastprivate(__pyx_v_p) schedule(guided) 2026-01-15T01:08:59,999 | ^~~ 2026-01-15T01:09:00,000 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:138012:46: note: call to ‘int fclose(FILE*)’ here 2026-01-15T01:09:00,001 138012 | (void)(fclose(__pyx_v_fid)); 2026-01-15T01:09:00,001 | ~~~~~~~^~~~~~~~~~~~~~ 2026-01-15T01:09:00,046 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp: In function ‘_ZL95__pyx_fuse_4__pyx_f_8ClearMap_18ParallelProcessing_14DataProcessing_19ArrayProcessingCode_write18__Pyx_memviewslicePciiii._omp_fn.0’: 2026-01-15T01:09:00,047 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:137459:33: warning: pointer may be used after ‘int fclose(FILE*)’ [-Wuse-after-free] 2026-01-15T01:09:00,048 137459 | #pragma omp for lastprivate(__pyx_v_fid) firstprivate(__pyx_v_p) lastprivate(__pyx_v_p) schedule(guided) 2026-01-15T01:09:00,048 | ^~~ 2026-01-15T01:09:00,049 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:137504:46: note: call to ‘int fclose(FILE*)’ here 2026-01-15T01:09:00,049 137504 | (void)(fclose(__pyx_v_fid)); 2026-01-15T01:09:00,050 | ~~~~~~~^~~~~~~~~~~~~~ 2026-01-15T01:09:00,100 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp: In function ‘_ZL95__pyx_fuse_3__pyx_f_8ClearMap_18ParallelProcessing_14DataProcessing_19ArrayProcessingCode_write18__Pyx_memviewslicePciiii._omp_fn.0’: 2026-01-15T01:09:00,100 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:136951:33: warning: pointer may be used after ‘int fclose(FILE*)’ [-Wuse-after-free] 2026-01-15T01:09:00,101 136951 | #pragma omp for lastprivate(__pyx_v_fid) firstprivate(__pyx_v_p) lastprivate(__pyx_v_p) schedule(guided) 2026-01-15T01:09:00,101 | ^~~ 2026-01-15T01:09:00,102 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:136996:46: note: call to ‘int fclose(FILE*)’ here 2026-01-15T01:09:00,103 136996 | (void)(fclose(__pyx_v_fid)); 2026-01-15T01:09:00,103 | ~~~~~~~^~~~~~~~~~~~~~ 2026-01-15T01:09:00,148 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp: In function ‘_ZL95__pyx_fuse_2__pyx_f_8ClearMap_18ParallelProcessing_14DataProcessing_19ArrayProcessingCode_write18__Pyx_memviewslicePciiii._omp_fn.0’: 2026-01-15T01:09:00,148 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:136443:33: warning: pointer may be used after ‘int fclose(FILE*)’ [-Wuse-after-free] 2026-01-15T01:09:00,149 136443 | #pragma omp for lastprivate(__pyx_v_fid) firstprivate(__pyx_v_p) lastprivate(__pyx_v_p) schedule(guided) 2026-01-15T01:09:00,150 | ^~~ 2026-01-15T01:09:00,150 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:136488:46: note: call to ‘int fclose(FILE*)’ here 2026-01-15T01:09:00,151 136488 | (void)(fclose(__pyx_v_fid)); 2026-01-15T01:09:00,152 | ~~~~~~~^~~~~~~~~~~~~~ 2026-01-15T01:09:00,197 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp: In function ‘_ZL95__pyx_fuse_1__pyx_f_8ClearMap_18ParallelProcessing_14DataProcessing_19ArrayProcessingCode_write18__Pyx_memviewslicePciiii._omp_fn.0’: 2026-01-15T01:09:00,197 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:135935:33: warning: pointer may be used after ‘int fclose(FILE*)’ [-Wuse-after-free] 2026-01-15T01:09:00,198 135935 | #pragma omp for lastprivate(__pyx_v_fid) firstprivate(__pyx_v_p) lastprivate(__pyx_v_p) schedule(guided) 2026-01-15T01:09:00,198 | ^~~ 2026-01-15T01:09:00,199 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:135980:46: note: call to ‘int fclose(FILE*)’ here 2026-01-15T01:09:00,200 135980 | (void)(fclose(__pyx_v_fid)); 2026-01-15T01:09:00,200 | ~~~~~~~^~~~~~~~~~~~~~ 2026-01-15T01:09:00,250 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp: In function ‘_ZL95__pyx_fuse_0__pyx_f_8ClearMap_18ParallelProcessing_14DataProcessing_19ArrayProcessingCode_write18__Pyx_memviewslicePciiii._omp_fn.0’: 2026-01-15T01:09:00,251 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:135427:33: warning: pointer may be used after ‘int fclose(FILE*)’ [-Wuse-after-free] 2026-01-15T01:09:00,252 135427 | #pragma omp for lastprivate(__pyx_v_fid) firstprivate(__pyx_v_p) lastprivate(__pyx_v_p) schedule(guided) 2026-01-15T01:09:00,252 | ^~~ 2026-01-15T01:09:00,253 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:135472:46: note: call to ‘int fclose(FILE*)’ here 2026-01-15T01:09:00,253 135472 | (void)(fclose(__pyx_v_fid)); 2026-01-15T01:09:00,254 | ~~~~~~~^~~~~~~~~~~~~~ 2026-01-15T01:09:00,299 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp: In function ‘_ZL94__pyx_fuse_6__pyx_f_8ClearMap_18ParallelProcessing_14DataProcessing_19ArrayProcessingCode_read18__Pyx_memviewslicePciiii._omp_fn.0’: 2026-01-15T01:09:00,300 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:134145:33: warning: pointer may be used after ‘int fclose(FILE*)’ [-Wuse-after-free] 2026-01-15T01:09:00,300 134145 | #pragma omp for lastprivate(__pyx_v_fid) firstprivate(__pyx_v_p) lastprivate(__pyx_v_p) schedule(guided) 2026-01-15T01:09:00,301 | ^~~ 2026-01-15T01:09:00,302 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:134190:46: note: call to ‘int fclose(FILE*)’ here 2026-01-15T01:09:00,302 134190 | (void)(fclose(__pyx_v_fid)); 2026-01-15T01:09:00,303 | ~~~~~~~^~~~~~~~~~~~~~ 2026-01-15T01:09:00,348 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp: In function ‘_ZL94__pyx_fuse_5__pyx_f_8ClearMap_18ParallelProcessing_14DataProcessing_19ArrayProcessingCode_read18__Pyx_memviewslicePciiii._omp_fn.0’: 2026-01-15T01:09:00,349 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:133637:33: warning: pointer may be used after ‘int fclose(FILE*)’ [-Wuse-after-free] 2026-01-15T01:09:00,349 133637 | #pragma omp for lastprivate(__pyx_v_fid) firstprivate(__pyx_v_p) lastprivate(__pyx_v_p) schedule(guided) 2026-01-15T01:09:00,350 | ^~~ 2026-01-15T01:09:00,350 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:133682:46: note: call to ‘int fclose(FILE*)’ here 2026-01-15T01:09:00,351 133682 | (void)(fclose(__pyx_v_fid)); 2026-01-15T01:09:00,352 | ~~~~~~~^~~~~~~~~~~~~~ 2026-01-15T01:09:00,396 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp: In function ‘_ZL94__pyx_fuse_4__pyx_f_8ClearMap_18ParallelProcessing_14DataProcessing_19ArrayProcessingCode_read18__Pyx_memviewslicePciiii._omp_fn.0’: 2026-01-15T01:09:00,397 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:133129:33: warning: pointer may be used after ‘int fclose(FILE*)’ [-Wuse-after-free] 2026-01-15T01:09:00,397 133129 | #pragma omp for lastprivate(__pyx_v_fid) firstprivate(__pyx_v_p) lastprivate(__pyx_v_p) schedule(guided) 2026-01-15T01:09:00,398 | ^~~ 2026-01-15T01:09:00,399 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:133174:46: note: call to ‘int fclose(FILE*)’ here 2026-01-15T01:09:00,399 133174 | (void)(fclose(__pyx_v_fid)); 2026-01-15T01:09:00,400 | ~~~~~~~^~~~~~~~~~~~~~ 2026-01-15T01:09:00,445 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp: In function ‘_ZL94__pyx_fuse_3__pyx_f_8ClearMap_18ParallelProcessing_14DataProcessing_19ArrayProcessingCode_read18__Pyx_memviewslicePciiii._omp_fn.0’: 2026-01-15T01:09:00,446 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:132621:33: warning: pointer may be used after ‘int fclose(FILE*)’ [-Wuse-after-free] 2026-01-15T01:09:00,446 132621 | #pragma omp for lastprivate(__pyx_v_fid) firstprivate(__pyx_v_p) lastprivate(__pyx_v_p) schedule(guided) 2026-01-15T01:09:00,447 | ^~~ 2026-01-15T01:09:00,447 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:132666:46: note: call to ‘int fclose(FILE*)’ here 2026-01-15T01:09:00,448 132666 | (void)(fclose(__pyx_v_fid)); 2026-01-15T01:09:00,448 | ~~~~~~~^~~~~~~~~~~~~~ 2026-01-15T01:09:00,494 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp: In function ‘_ZL94__pyx_fuse_2__pyx_f_8ClearMap_18ParallelProcessing_14DataProcessing_19ArrayProcessingCode_read18__Pyx_memviewslicePciiii._omp_fn.0’: 2026-01-15T01:09:00,495 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:132113:33: warning: pointer may be used after ‘int fclose(FILE*)’ [-Wuse-after-free] 2026-01-15T01:09:00,495 132113 | #pragma omp for lastprivate(__pyx_v_fid) firstprivate(__pyx_v_p) lastprivate(__pyx_v_p) schedule(guided) 2026-01-15T01:09:00,495 | ^~~ 2026-01-15T01:09:00,496 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:132158:46: note: call to ‘int fclose(FILE*)’ here 2026-01-15T01:09:00,496 132158 | (void)(fclose(__pyx_v_fid)); 2026-01-15T01:09:00,497 | ~~~~~~~^~~~~~~~~~~~~~ 2026-01-15T01:09:00,542 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp: In function ‘_ZL94__pyx_fuse_1__pyx_f_8ClearMap_18ParallelProcessing_14DataProcessing_19ArrayProcessingCode_read18__Pyx_memviewslicePciiii._omp_fn.0’: 2026-01-15T01:09:00,542 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:131605:33: warning: pointer may be used after ‘int fclose(FILE*)’ [-Wuse-after-free] 2026-01-15T01:09:00,543 131605 | #pragma omp for lastprivate(__pyx_v_fid) firstprivate(__pyx_v_p) lastprivate(__pyx_v_p) schedule(guided) 2026-01-15T01:09:00,543 | ^~~ 2026-01-15T01:09:00,544 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:131650:46: note: call to ‘int fclose(FILE*)’ here 2026-01-15T01:09:00,545 131650 | (void)(fclose(__pyx_v_fid)); 2026-01-15T01:09:00,545 | ~~~~~~~^~~~~~~~~~~~~~ 2026-01-15T01:09:00,591 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp: In function ‘_ZL94__pyx_fuse_0__pyx_f_8ClearMap_18ParallelProcessing_14DataProcessing_19ArrayProcessingCode_read18__Pyx_memviewslicePciiii._omp_fn.0’: 2026-01-15T01:09:00,592 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:131097:33: warning: pointer may be used after ‘int fclose(FILE*)’ [-Wuse-after-free] 2026-01-15T01:09:00,592 131097 | #pragma omp for lastprivate(__pyx_v_fid) firstprivate(__pyx_v_p) lastprivate(__pyx_v_p) schedule(guided) 2026-01-15T01:09:00,593 | ^~~ 2026-01-15T01:09:00,594 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:131142:46: note: call to ‘int fclose(FILE*)’ here 2026-01-15T01:09:00,594 131142 | (void)(fclose(__pyx_v_fid)); 2026-01-15T01:09:00,595 | ~~~~~~~^~~~~~~~~~~~~~ 2026-01-15T01:13:14,285 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpython-311-arm-linux-gnueabihf.so -fopenmp 2026-01-15T01:13:14,903 building 'ClearMap.ParallelProcessing.DataProcessing.ConvolvePointListCode' extension 2026-01-15T01:13:14,904 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-j_4fvn0w/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/tmp/pip-wheel-3vlnwnq6/clearmap-nmr_0d221e9b85064e2fab7c1e2e7a7662f3 -I/usr/include/python3.11 -c ClearMap/ParallelProcessing/DataProcessing/ConvolvePointListCode.cpp -o build/temp.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing/ConvolvePointListCode.o -O3 -march=native -fopenmp -Wno-unused-variable -Wno-maybe-uninitialized -Wno-array-bounds 2026-01-15T01:13:55,465 ClearMap/ParallelProcessing/DataProcessing/ConvolvePointListCode.cpp: In function ‘PyObject* __pyx_pw_8ClearMap_18ParallelProcessing_14DataProcessing_21ConvolvePointListCode_2805__pyx_fuse_0_2_4convolve_3d_indices(PyObject*, PyObject*, PyObject*)’: 2026-01-15T01:13:55,465 ClearMap/ParallelProcessing/DataProcessing/ConvolvePointListCode.cpp:668423: note: ‘-Wmisleading-indentation’ is disabled from this point onwards, since column-tracking was disabled due to the size of the code/headers 2026-01-15T01:13:55,466 668423 | else goto __pyx_L5_argtuple_error; 2026-01-15T01:13:55,466 | 2026-01-15T01:13:55,467 ClearMap/ParallelProcessing/DataProcessing/ConvolvePointListCode.cpp:668423: note: adding ‘-flarge-source-files’ will allow for more column-tracking support, at the expense of compilation time and memory 2026-01-15T01:14:22,433 virtual memory exhausted: Cannot allocate memory 2026-01-15T01:14:22,561 error: command '/usr/bin/arm-linux-gnueabihf-g++' failed with exit code 1 2026-01-15T01:14:22,743 ERROR: [present-rich] Building wheel for clearmap-nmr (pyproject.toml) exited with 1 2026-01-15T01:14:22,757 [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/lib/python3/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmpuab1k6hb[/] 2026-01-15T01:14:22,757 [bold magenta]cwd[/]: /tmp/pip-wheel-3vlnwnq6/clearmap-nmr_0d221e9b85064e2fab7c1e2e7a7662f3 2026-01-15T01:14:22,758 Building wheel for clearmap-nmr (pyproject.toml): finished with status 'error' 2026-01-15T01:14:22,761 ERROR: Failed building wheel for clearmap-nmr 2026-01-15T01:14:22,763 Failed to build clearmap-nmr 2026-01-15T01:14:22,765 ERROR: Failed to build one or more wheels 2026-01-15T01:14:22,766 Exception information: 2026-01-15T01:14:22,766 Traceback (most recent call last): 2026-01-15T01:14:22,766 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper 2026-01-15T01:14:22,766 status = run_func(*args) 2026-01-15T01:14:22,766 ^^^^^^^^^^^^^^^ 2026-01-15T01:14:22,766 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 247, in wrapper 2026-01-15T01:14:22,766 return func(self, options, args) 2026-01-15T01:14:22,766 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2026-01-15T01:14:22,766 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 201, in run 2026-01-15T01:14:22,766 raise CommandError("Failed to build one or more wheels") 2026-01-15T01:14:22,766 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2026-01-15T01:14:22,771 Removed build tracker: '/tmp/pip-build-tracker-1m2hseog'