2026-02-06T16:40:10,266 Created temporary directory: /tmp/pip-ephem-wheel-cache-6njie0fo 2026-02-06T16:40:10,268 Created temporary directory: /tmp/pip-build-tracker-vap6mquf 2026-02-06T16:40:10,269 Initialized build tracking at /tmp/pip-build-tracker-vap6mquf 2026-02-06T16:40:10,269 Created build tracker: /tmp/pip-build-tracker-vap6mquf 2026-02-06T16:40:10,270 Entered build tracker: /tmp/pip-build-tracker-vap6mquf 2026-02-06T16:40:10,271 Created temporary directory: /tmp/pip-wheel-ddvfp2wa 2026-02-06T16:40:10,274 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-02-06T16:40:10,276 Created temporary directory: /tmp/pip-ephem-wheel-cache-5bfi145m 2026-02-06T16:40:10,303 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-02-06T16:40:10,306 2 location(s) to search for versions of clearmap-nmr: 2026-02-06T16:40:10,306 * https://pypi.org/simple/clearmap-nmr/ 2026-02-06T16:40:10,306 * https://www.piwheels.org/simple/clearmap-nmr/ 2026-02-06T16:40:10,307 Fetching project page and analyzing links: https://pypi.org/simple/clearmap-nmr/ 2026-02-06T16:40:10,308 Getting page https://pypi.org/simple/clearmap-nmr/ 2026-02-06T16:40:10,310 Found index url https://pypi.org/simple 2026-02-06T16:40:10,602 Fetched page https://pypi.org/simple/clearmap-nmr/ as application/vnd.pypi.simple.v1+json 2026-02-06T16:40:10,604 Skipping link: No binaries permitted for clearmap-nmr: https://files.pythonhosted.org/packages/48/d5/07df291089cb7491390ff95e76db30649dbb1d0f8c3c28067770430e42a0/clearmap_nmr-0.2.0-cp310-cp310-manylinux_2_39_x86_64.whl (from https://pypi.org/simple/clearmap-nmr/) (requires-python:>=3.8) 2026-02-06T16:40:10,605 Found link https://files.pythonhosted.org/packages/5e/41/d46423b69c6f3c7101cc624c0d72875cb87d91777271ad3ca34aef7be05e/clearmap_nmr-0.2.0.tar.gz (from https://pypi.org/simple/clearmap-nmr/) (requires-python:>=3.8), version: 0.2.0 2026-02-06T16:40:10,606 Skipping link: No binaries permitted for clearmap-nmr: https://files.pythonhosted.org/packages/76/a5/63ce7d7c7a0c8bedeaf1d1c8c6d25dd9c42a81fad042d1588aea73d141b2/clearmap_nmr-0.3.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/clearmap-nmr/) (requires-python:>=3.8) 2026-02-06T16:40:10,607 Skipping link: No binaries permitted for clearmap-nmr: https://files.pythonhosted.org/packages/4e/66/135c660693379d893bf0ee899392ea463f0220d3bf44fd00c7d096995383/clearmap_nmr-0.3.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/clearmap-nmr/) (requires-python:>=3.8) 2026-02-06T16:40:10,607 Skipping link: No binaries permitted for clearmap-nmr: https://files.pythonhosted.org/packages/76/8f/eb39b55e644a776ea3d56b0af7b37b0b3f9e7ffd9dc961ba762c7206e4b9/clearmap_nmr-0.3.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/clearmap-nmr/) (requires-python:>=3.8) 2026-02-06T16:40:10,608 Skipping link: No binaries permitted for clearmap-nmr: https://files.pythonhosted.org/packages/ad/27/8bc1d466f1e74db9b21bbf20be79b42bf40dec1d61d4171765fbcf37b377/clearmap_nmr-0.3.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/clearmap-nmr/) (requires-python:>=3.8) 2026-02-06T16:40:10,609 Found link https://files.pythonhosted.org/packages/a9/33/b84bef21e1a497d7ea8ff9a025507956250e1f3b8a77f98601d31d2a251e/clearmap_nmr-0.3.0.tar.gz (from https://pypi.org/simple/clearmap-nmr/) (requires-python:>=3.8), version: 0.3.0 2026-02-06T16:40:10,610 Fetching project page and analyzing links: https://www.piwheels.org/simple/clearmap-nmr/ 2026-02-06T16:40:10,610 Getting page https://www.piwheels.org/simple/clearmap-nmr/ 2026-02-06T16:40:10,612 Found index url https://www.piwheels.org/simple 2026-02-06T16:40:10,773 Fetched page https://www.piwheels.org/simple/clearmap-nmr/ as text/html 2026-02-06T16:40:10,774 Skipping link: not a file: https://www.piwheels.org/simple/clearmap-nmr/ 2026-02-06T16:40:10,775 Skipping link: not a file: https://pypi.org/simple/clearmap-nmr/ 2026-02-06T16:40:10,794 Given no hashes to check 1 links for project 'clearmap-nmr': discarding no candidates 2026-02-06T16:40:10,812 Collecting clearmap-nmr==0.3.0 2026-02-06T16:40:10,815 Created temporary directory: /tmp/pip-unpack-k3ps1al_ 2026-02-06T16:40:10,954 Downloading clearmap_nmr-0.3.0.tar.gz (563 kB) 2026-02-06T16:40:11,790 Added clearmap-nmr==0.3.0 from https://files.pythonhosted.org/packages/a9/33/b84bef21e1a497d7ea8ff9a025507956250e1f3b8a77f98601d31d2a251e/clearmap_nmr-0.3.0.tar.gz to build tracker '/tmp/pip-build-tracker-vap6mquf' 2026-02-06T16:40:11,799 Created temporary directory: /tmp/pip-build-env-k8tutqv9 2026-02-06T16:40:11,804 Installing build dependencies: started 2026-02-06T16:40:11,805 Running command pip subprocess to install build dependencies 2026-02-06T16:40:12,985 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-02-06T16:40:13,602 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-02-06T16:40:13,628 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-02-06T16:40:15,495 Collecting setuptools<77.0,>=61.0 2026-02-06T16:40:15,608 Using cached https://www.piwheels.org/simple/setuptools/setuptools-76.1.0-py3-none-any.whl (1.2 MB) 2026-02-06T16:40:17,750 Collecting Cython<3.0,>=0.29 2026-02-06T16:40:18,956 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.37-cp311-cp311-linux_armv7l.whl (5.0 MB) 2026-02-06T16:40:20,146 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-02-06T16:40:20,153 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-02-06T16:40:20,160 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-02-06T16:40:20,167 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-02-06T16:40:20,174 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-02-06T16:40:21,043 Collecting numpy>=1.19 2026-02-06T16:40:21,497 Using cached https://www.piwheels.org/simple/numpy/numpy-2.4.1-cp311-cp311-linux_armv7l.whl (6.3 MB) 2026-02-06T16:40:21,898 Collecting wheel 2026-02-06T16:40:21,904 Using cached wheel-0.46.3-py3-none-any.whl (30 kB) 2026-02-06T16:40:22,095 Collecting packaging>=24.0 2026-02-06T16:40:22,101 Using cached packaging-26.0-py3-none-any.whl (74 kB) 2026-02-06T16:40:25,211 Installing collected packages: setuptools, packaging, numpy, Cython, wheel 2026-02-06T16:40:39,229 Creating /tmp/pip-build-env-k8tutqv9/overlay/local/bin 2026-02-06T16:40:39,232 changing mode of /tmp/pip-build-env-k8tutqv9/overlay/local/bin/f2py to 755 2026-02-06T16:40:39,235 changing mode of /tmp/pip-build-env-k8tutqv9/overlay/local/bin/numpy-config to 755 2026-02-06T16:40:42,243 changing mode of /tmp/pip-build-env-k8tutqv9/overlay/local/bin/cygdb to 755 2026-02-06T16:40:42,246 changing mode of /tmp/pip-build-env-k8tutqv9/overlay/local/bin/cython to 755 2026-02-06T16:40:42,248 changing mode of /tmp/pip-build-env-k8tutqv9/overlay/local/bin/cythonize to 755 2026-02-06T16:40:42,406 changing mode of /tmp/pip-build-env-k8tutqv9/overlay/local/bin/wheel to 755 2026-02-06T16:40:42,461 Successfully installed Cython-0.29.37 numpy-2.4.1 packaging-26.0 setuptools-76.1.0 wheel-0.46.3 2026-02-06T16:40:42,936 Installing build dependencies: finished with status 'done' 2026-02-06T16:40:42,944 Getting requirements to build wheel: started 2026-02-06T16:40:42,946 Running command Getting requirements to build wheel 2026-02-06T16:40:44,735 Compiling ClearMap/ImageProcessing/Binary/FillingCode.pyx because it changed. 2026-02-06T16:40:44,736 Compiling ClearMap/ImageProcessing/Clipping/ClippingCode.pyx because it changed. 2026-02-06T16:40:44,736 Compiling ClearMap/ImageProcessing/Differentiation/HessianCode.pyx because it changed. 2026-02-06T16:40:44,737 Compiling ClearMap/ImageProcessing/Filter/Rank/RankCode.pyx because it changed. 2026-02-06T16:40:44,737 Compiling ClearMap/ImageProcessing/Filter/Rank/PercentileCode.pyx because it changed. 2026-02-06T16:40:44,738 Compiling ClearMap/ImageProcessing/Filter/Rank/BilateralCode.pyx because it changed. 2026-02-06T16:40:44,738 Compiling ClearMap/ImageProcessing/Filter/Rank/ParametricCode.pyx because it changed. 2026-02-06T16:40:44,739 Compiling ClearMap/ImageProcessing/Thresholding/ThresholdingCode.pyx because it changed. 2026-02-06T16:40:44,739 Compiling ClearMap/ImageProcessing/Tracing/TraceCode.pyx because it changed. 2026-02-06T16:40:44,740 Compiling ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.pyx because it changed. 2026-02-06T16:40:44,740 Compiling ClearMap/ParallelProcessing/DataProcessing/ConvolvePointListCode.pyx because it changed. 2026-02-06T16:40:44,741 Compiling ClearMap/ParallelProcessing/DataProcessing/DevolvePointListCode.pyx because it changed. 2026-02-06T16:40:44,741 Compiling ClearMap/ParallelProcessing/DataProcessing/MeasurePointListCode.pyx because it changed. 2026-02-06T16:40:44,742 Compiling ClearMap/ParallelProcessing/DataProcessing/StatisticsPointListCode.pyx because it changed. 2026-02-06T16:44:44,587 [ 3/14] Cythonizing ClearMap/ImageProcessing/Differentiation/HessianCode.pyx 2026-02-06T16:44:44,589 [ 7/14] Cythonizing ClearMap/ImageProcessing/Filter/Rank/RankCode.pyx 2026-02-06T16:44:44,591 [14/14] Cythonizing ClearMap/ParallelProcessing/DataProcessing/StatisticsPointListCode.pyx 2026-02-06T16:44:44,592 [ 2/14] Cythonizing ClearMap/ImageProcessing/Clipping/ClippingCode.pyx 2026-02-06T16:44:44,593 [ 6/14] Cythonizing ClearMap/ImageProcessing/Filter/Rank/PercentileCode.pyx 2026-02-06T16:44:44,593 [12/14] Cythonizing ClearMap/ParallelProcessing/DataProcessing/DevolvePointListCode.pyx 2026-02-06T16:44:44,599 [ 1/14] Cythonizing ClearMap/ImageProcessing/Binary/FillingCode.pyx 2026-02-06T16:44:44,600 [ 5/14] Cythonizing ClearMap/ImageProcessing/Filter/Rank/ParametricCode.pyx 2026-02-06T16:44:44,601 [ 9/14] Cythonizing ClearMap/ImageProcessing/Tracing/TraceCode.pyx 2026-02-06T16:44:44,602 [10/14] Cythonizing ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.pyx 2026-02-06T16:44:44,602 [13/14] Cythonizing ClearMap/ParallelProcessing/DataProcessing/MeasurePointListCode.pyx 2026-02-06T16:44:44,603 [ 4/14] Cythonizing ClearMap/ImageProcessing/Filter/Rank/BilateralCode.pyx 2026-02-06T16:44:44,604 [ 8/14] Cythonizing ClearMap/ImageProcessing/Thresholding/ThresholdingCode.pyx 2026-02-06T16:44:44,606 [11/14] Cythonizing ClearMap/ParallelProcessing/DataProcessing/ConvolvePointListCode.pyx 2026-02-06T16:44:44,973 running egg_info 2026-02-06T16:44:44,981 writing clearmap_nmr.egg-info/PKG-INFO 2026-02-06T16:44:44,986 writing dependency_links to clearmap_nmr.egg-info/dependency_links.txt 2026-02-06T16:44:44,989 writing requirements to clearmap_nmr.egg-info/requires.txt 2026-02-06T16:44:44,991 writing top-level names to clearmap_nmr.egg-info/top_level.txt 2026-02-06T16:44:45,069 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:45,070 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:45,070 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:45,071 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:45,071 dependency 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won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:45,074 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:45,074 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:45,075 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:45,076 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:45,076 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:45,077 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:45,077 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:45,078 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:45,078 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:45,079 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:45,079 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:45,080 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:45,080 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:45,081 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:45,081 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:45,082 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:45,082 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:45,082 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:45,083 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:45,083 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:45,084 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:45,084 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:45,085 dependency 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manifest file 'clearmap_nmr.egg-info/SOURCES.txt' 2026-02-06T16:44:45,141 reading manifest template 'MANIFEST.in' 2026-02-06T16:44:45,573 warning: no previously-included files matching '*.so' found anywhere in distribution 2026-02-06T16:44:45,575 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-02-06T16:44:45,576 adding license file 'LICENSE' 2026-02-06T16:44:45,576 adding license file 'LICENSE.txt' 2026-02-06T16:44:45,593 writing manifest file 'clearmap_nmr.egg-info/SOURCES.txt' 2026-02-06T16:44:45,784 Getting requirements to build wheel: finished with status 'done' 2026-02-06T16:44:45,788 Created temporary directory: /tmp/pip-modern-metadata-jp2xcztt 2026-02-06T16:44:45,791 Preparing metadata (pyproject.toml): started 2026-02-06T16:44:45,792 Running command Preparing metadata (pyproject.toml) 2026-02-06T16:44:47,529 running dist_info 2026-02-06T16:44:47,544 creating /tmp/pip-modern-metadata-jp2xcztt/clearmap_nmr.egg-info 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/tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:47,655 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:47,655 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:47,656 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:47,656 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:47,657 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:47,657 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:47,658 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:47,658 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:47,659 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:47,659 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:47,660 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:47,660 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:47,661 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:47,662 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:47,662 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:47,663 reading manifest file '/tmp/pip-modern-metadata-jp2xcztt/clearmap_nmr.egg-info/SOURCES.txt' 2026-02-06T16:44:47,664 reading manifest template 'MANIFEST.in' 2026-02-06T16:44:48,153 warning: no previously-included files matching '*.so' found anywhere in distribution 2026-02-06T16:44:48,154 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-02-06T16:44:48,155 adding license file 'LICENSE' 2026-02-06T16:44:48,155 adding license file 'LICENSE.txt' 2026-02-06T16:44:48,167 writing manifest file '/tmp/pip-modern-metadata-jp2xcztt/clearmap_nmr.egg-info/SOURCES.txt' 2026-02-06T16:44:48,169 creating '/tmp/pip-modern-metadata-jp2xcztt/clearmap_nmr-0.3.0.dist-info' 2026-02-06T16:44:48,379 Preparing metadata (pyproject.toml): finished with status 'done' 2026-02-06T16:44:48,384 Source in /tmp/pip-wheel-ddvfp2wa/clearmap-nmr_56a727a4b11c4396b20959892f6addae has version 0.3.0, which satisfies requirement clearmap-nmr==0.3.0 from https://files.pythonhosted.org/packages/a9/33/b84bef21e1a497d7ea8ff9a025507956250e1f3b8a77f98601d31d2a251e/clearmap_nmr-0.3.0.tar.gz 2026-02-06T16:44:48,386 Removed clearmap-nmr==0.3.0 from https://files.pythonhosted.org/packages/a9/33/b84bef21e1a497d7ea8ff9a025507956250e1f3b8a77f98601d31d2a251e/clearmap_nmr-0.3.0.tar.gz from build tracker '/tmp/pip-build-tracker-vap6mquf' 2026-02-06T16:44:48,391 Created temporary directory: /tmp/pip-unpack-3nkcd55w 2026-02-06T16:44:48,392 Building wheels for collected packages: clearmap-nmr 2026-02-06T16:44:48,396 Created temporary directory: /tmp/pip-wheel-5aina_r3 2026-02-06T16:44:48,397 Destination directory: /tmp/pip-wheel-5aina_r3 2026-02-06T16:44:48,399 Building wheel for clearmap-nmr (pyproject.toml): started 2026-02-06T16:44:48,400 Running command Building wheel for clearmap-nmr (pyproject.toml) 2026-02-06T16:44:50,019 running bdist_wheel 2026-02-06T16:44:50,045 running build 2026-02-06T16:44:50,046 running build_py 2026-02-06T16:44:50,054 creating build/lib.linux-armv7l-cpython-311/ClearMap 2026-02-06T16:44:50,056 copying ClearMap/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap 2026-02-06T16:44:50,058 copying ClearMap/Environment.py -> build/lib.linux-armv7l-cpython-311/ClearMap 2026-02-06T16:44:50,060 copying ClearMap/Settings.py -> build/lib.linux-armv7l-cpython-311/ClearMap 2026-02-06T16:44:50,063 copying ClearMap/Compile.py -> build/lib.linux-armv7l-cpython-311/ClearMap 2026-02-06T16:44:50,065 creating build/lib.linux-armv7l-cpython-311/ClearMap/Alignment 2026-02-06T16:44:50,067 copying ClearMap/Alignment/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Alignment 2026-02-06T16:44:50,069 copying ClearMap/Alignment/Resampling.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Alignment 2026-02-06T16:44:50,072 copying ClearMap/Alignment/Elastix.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Alignment 2026-02-06T16:44:50,075 copying ClearMap/Alignment/Elastix_GF.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Alignment 2026-02-06T16:44:50,078 copying ClearMap/Alignment/Annotation.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Alignment 2026-02-06T16:44:50,082 creating build/lib.linux-armv7l-cpython-311/ClearMap/Alignment/Stitching 2026-02-06T16:44:50,082 copying ClearMap/Alignment/Stitching/StitchingWobbly.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Alignment/Stitching 2026-02-06T16:44:50,086 copying ClearMap/Alignment/Stitching/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Alignment/Stitching 2026-02-06T16:44:50,088 copying ClearMap/Alignment/Stitching/StitchingRigid.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Alignment/Stitching 2026-02-06T16:44:50,094 copying ClearMap/Alignment/Stitching/Tracking.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Alignment/Stitching 2026-02-06T16:44:50,096 creating build/lib.linux-armv7l-cpython-311/ClearMap/Analysis 2026-02-06T16:44:50,098 copying ClearMap/Analysis/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis 2026-02-06T16:44:50,100 copying ClearMap/Analysis/DimensionReduction.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis 2026-02-06T16:44:50,102 creating build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Curves 2026-02-06T16:44:50,103 copying ClearMap/Analysis/Curves/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Curves 2026-02-06T16:44:50,105 copying ClearMap/Analysis/Curves/Resampling.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Curves 2026-02-06T16:44:50,107 copying ClearMap/Analysis/Curves/Extrapolation.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Curves 2026-02-06T16:44:50,110 creating build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Graphs 2026-02-06T16:44:50,111 copying ClearMap/Analysis/Graphs/GraphGt.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Graphs 2026-02-06T16:44:50,114 copying ClearMap/Analysis/Graphs/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Graphs 2026-02-06T16:44:50,116 copying ClearMap/Analysis/Graphs/GraphRendering.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Graphs 2026-02-06T16:44:50,119 copying ClearMap/Analysis/Graphs/Graph.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Graphs 2026-02-06T16:44:50,122 copying ClearMap/Analysis/Graphs/GraphProcessing.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Graphs 2026-02-06T16:44:50,125 creating build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Measurements 2026-02-06T16:44:50,126 copying ClearMap/Analysis/Measurements/MeasureExpression.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Measurements 2026-02-06T16:44:50,129 copying ClearMap/Analysis/Measurements/MeasureRadius.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Measurements 2026-02-06T16:44:50,131 copying ClearMap/Analysis/Measurements/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Measurements 2026-02-06T16:44:50,133 copying ClearMap/Analysis/Measurements/MaximaDetection.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Measurements 2026-02-06T16:44:50,136 copying ClearMap/Analysis/Measurements/Voxelization.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Measurements 2026-02-06T16:44:50,138 copying ClearMap/Analysis/Measurements/ShapeDetection.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Measurements 2026-02-06T16:44:50,141 creating build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Statistics 2026-02-06T16:44:50,142 copying ClearMap/Analysis/Statistics/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Statistics 2026-02-06T16:44:50,144 copying ClearMap/Analysis/Statistics/StatisticalTests.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Statistics 2026-02-06T16:44:50,146 copying ClearMap/Analysis/Statistics/GroupStatistics.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Statistics 2026-02-06T16:44:50,149 copying ClearMap/Analysis/Statistics/MultipleComparisonCorrection.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Statistics 2026-02-06T16:44:50,152 creating build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing 2026-02-06T16:44:50,153 copying ClearMap/ImageProcessing/LightsheetCorrection.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing 2026-02-06T16:44:50,155 copying ClearMap/ImageProcessing/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing 2026-02-06T16:44:50,157 copying ClearMap/ImageProcessing/LocalStatistics.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing 2026-02-06T16:44:50,159 copying ClearMap/ImageProcessing/GreyReconstruction.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing 2026-02-06T16:44:50,162 copying ClearMap/ImageProcessing/IlluminationCorrection.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing 2026-02-06T16:44:50,165 creating build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Binary 2026-02-06T16:44:50,165 copying ClearMap/ImageProcessing/Binary/Smoothing.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Binary 2026-02-06T16:44:50,169 copying ClearMap/ImageProcessing/Binary/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Binary 2026-02-06T16:44:50,171 copying ClearMap/ImageProcessing/Binary/Filling.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Binary 2026-02-06T16:44:50,174 creating build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Clipping 2026-02-06T16:44:50,175 copying ClearMap/ImageProcessing/Clipping/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Clipping 2026-02-06T16:44:50,177 copying ClearMap/ImageProcessing/Clipping/Clipping.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Clipping 2026-02-06T16:44:50,179 creating build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Differentiation 2026-02-06T16:44:50,180 copying ClearMap/ImageProcessing/Differentiation/Gradient.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Differentiation 2026-02-06T16:44:50,182 copying ClearMap/ImageProcessing/Differentiation/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Differentiation 2026-02-06T16:44:50,184 copying ClearMap/ImageProcessing/Differentiation/Hessian.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Differentiation 2026-02-06T16:44:50,187 creating build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Experts 2026-02-06T16:44:50,188 copying ClearMap/ImageProcessing/Experts/Vasculature.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Experts 2026-02-06T16:44:50,192 copying ClearMap/ImageProcessing/Experts/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Experts 2026-02-06T16:44:50,194 copying ClearMap/ImageProcessing/Experts/Cells.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Experts 2026-02-06T16:44:50,197 creating build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter 2026-02-06T16:44:50,198 copying ClearMap/ImageProcessing/Filter/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter 2026-02-06T16:44:50,200 copying ClearMap/ImageProcessing/Filter/StructureElement.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter 2026-02-06T16:44:50,202 copying ClearMap/ImageProcessing/Filter/FilterKernel.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter 2026-02-06T16:44:50,205 creating build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank 2026-02-06T16:44:50,206 copying ClearMap/ImageProcessing/Filter/Rank/Bilateral.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank 2026-02-06T16:44:50,209 copying ClearMap/ImageProcessing/Filter/Rank/RankResample.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank 2026-02-06T16:44:50,211 copying ClearMap/ImageProcessing/Filter/Rank/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank 2026-02-06T16:44:50,213 copying ClearMap/ImageProcessing/Filter/Rank/Rank.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank 2026-02-06T16:44:50,216 copying ClearMap/ImageProcessing/Filter/Rank/Parametric.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank 2026-02-06T16:44:50,218 copying ClearMap/ImageProcessing/Filter/Rank/Percentile.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank 2026-02-06T16:44:50,221 creating build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Skeletonization 2026-02-06T16:44:50,222 copying ClearMap/ImageProcessing/Skeletonization/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Skeletonization 2026-02-06T16:44:50,224 copying ClearMap/ImageProcessing/Skeletonization/Skeletonization.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Skeletonization 2026-02-06T16:44:50,226 copying ClearMap/ImageProcessing/Skeletonization/SkeletonProcessing.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Skeletonization 2026-02-06T16:44:50,228 copying ClearMap/ImageProcessing/Skeletonization/PK12.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Skeletonization 2026-02-06T16:44:50,231 creating build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Thresholding 2026-02-06T16:44:50,232 copying ClearMap/ImageProcessing/Thresholding/Thresholding.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Thresholding 2026-02-06T16:44:50,234 copying ClearMap/ImageProcessing/Thresholding/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Thresholding 2026-02-06T16:44:50,237 creating build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Topology 2026-02-06T16:44:50,238 copying ClearMap/ImageProcessing/Topology/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Topology 2026-02-06T16:44:50,240 copying ClearMap/ImageProcessing/Topology/Topology3d.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Topology 2026-02-06T16:44:50,242 copying ClearMap/ImageProcessing/Topology/Topology2d.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Topology 2026-02-06T16:44:50,245 creating build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Tracing 2026-02-06T16:44:50,246 copying ClearMap/ImageProcessing/Tracing/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Tracing 2026-02-06T16:44:50,248 copying ClearMap/ImageProcessing/Tracing/Trace.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Tracing 2026-02-06T16:44:50,251 copying ClearMap/ImageProcessing/Tracing/Connect.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Tracing 2026-02-06T16:44:50,254 creating build/lib.linux-armv7l-cpython-311/ClearMap/IO 2026-02-06T16:44:50,255 copying ClearMap/IO/NRRD.py -> build/lib.linux-armv7l-cpython-311/ClearMap/IO 2026-02-06T16:44:50,258 copying ClearMap/IO/Slice.py -> build/lib.linux-armv7l-cpython-311/ClearMap/IO 2026-02-06T16:44:50,261 copying ClearMap/IO/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/IO 2026-02-06T16:44:50,263 copying ClearMap/IO/Source.py -> build/lib.linux-armv7l-cpython-311/ClearMap/IO 2026-02-06T16:44:50,268 copying ClearMap/IO/Workspace.py -> build/lib.linux-armv7l-cpython-311/ClearMap/IO 2026-02-06T16:44:50,271 copying ClearMap/IO/IO.py -> build/lib.linux-armv7l-cpython-311/ClearMap/IO 2026-02-06T16:44:50,274 copying ClearMap/IO/Temporary.py -> build/lib.linux-armv7l-cpython-311/ClearMap/IO 2026-02-06T16:44:50,276 copying ClearMap/IO/MHD.py -> build/lib.linux-armv7l-cpython-311/ClearMap/IO 2026-02-06T16:44:50,279 copying ClearMap/IO/MMP.py -> build/lib.linux-armv7l-cpython-311/ClearMap/IO 2026-02-06T16:44:50,281 copying ClearMap/IO/SMA.py -> build/lib.linux-armv7l-cpython-311/ClearMap/IO 2026-02-06T16:44:50,284 copying ClearMap/IO/FileList.py -> build/lib.linux-armv7l-cpython-311/ClearMap/IO 2026-02-06T16:44:50,287 copying ClearMap/IO/FileUtils.py -> build/lib.linux-armv7l-cpython-311/ClearMap/IO 2026-02-06T16:44:50,290 copying ClearMap/IO/TIF.py -> build/lib.linux-armv7l-cpython-311/ClearMap/IO 2026-02-06T16:44:50,293 copying ClearMap/IO/NPY.py -> build/lib.linux-armv7l-cpython-311/ClearMap/IO 2026-02-06T16:44:50,296 copying ClearMap/IO/GT.py -> build/lib.linux-armv7l-cpython-311/ClearMap/IO 2026-02-06T16:44:50,298 copying ClearMap/IO/CSV.py -> build/lib.linux-armv7l-cpython-311/ClearMap/IO 2026-02-06T16:44:50,302 creating build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing 2026-02-06T16:44:50,303 copying ClearMap/ParallelProcessing/SharedMemoryArray.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing 2026-02-06T16:44:50,306 copying ClearMap/ParallelProcessing/Block.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing 2026-02-06T16:44:50,309 copying ClearMap/ParallelProcessing/ParallelTraceback.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing 2026-02-06T16:44:50,311 copying ClearMap/ParallelProcessing/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing 2026-02-06T16:44:50,313 copying ClearMap/ParallelProcessing/ProcessWriter.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing 2026-02-06T16:44:50,316 copying ClearMap/ParallelProcessing/BlockProcessing.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing 2026-02-06T16:44:50,319 copying ClearMap/ParallelProcessing/SharedMemoryManager.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing 2026-02-06T16:44:50,322 creating build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing 2026-02-06T16:44:50,323 copying ClearMap/ParallelProcessing/DataProcessing/StatisticsPointList.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing 2026-02-06T16:44:50,326 copying ClearMap/ParallelProcessing/DataProcessing/ConvolvePointList.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing 2026-02-06T16:44:50,329 copying ClearMap/ParallelProcessing/DataProcessing/MeasurePointList.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing 2026-02-06T16:44:50,332 copying ClearMap/ParallelProcessing/DataProcessing/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing 2026-02-06T16:44:50,335 copying ClearMap/ParallelProcessing/DataProcessing/DevolvePointList.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing 2026-02-06T16:44:50,337 copying ClearMap/ParallelProcessing/DataProcessing/ArrayProcessing.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing 2026-02-06T16:44:50,341 creating build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras 2026-02-06T16:44:50,342 copying ClearMap/GF_extras/ilastik_code_v7.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras 2026-02-06T16:44:50,346 copying ClearMap/GF_extras/cell_intensity_dask.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras 2026-02-06T16:44:50,349 copying ClearMap/GF_extras/clearmap2_statistics_code_v6.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras 2026-02-06T16:44:50,352 copying ClearMap/GF_extras/ilastik_code_v8.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras 2026-02-06T16:44:50,355 copying ClearMap/GF_extras/ilastik_code_v6.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras 2026-02-06T16:44:50,358 copying ClearMap/GF_extras/IlastikClassification.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras 2026-02-06T16:44:50,361 copying ClearMap/GF_extras/cell_intensity.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras 2026-02-06T16:44:50,364 creating build/lib.linux-armv7l-cpython-311/ClearMap/Tests 2026-02-06T16:44:50,365 copying ClearMap/Tests/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Tests 2026-02-06T16:44:50,368 copying ClearMap/Tests/Files.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Tests 2026-02-06T16:44:50,371 creating build/lib.linux-armv7l-cpython-311/ClearMap/Scripts 2026-02-06T16:44:50,373 copying ClearMap/Scripts/CellMap.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Scripts 2026-02-06T16:44:50,376 copying ClearMap/Scripts/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Scripts 2026-02-06T16:44:50,378 copying ClearMap/Scripts/CellMap_zl_20221116.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Scripts 2026-02-06T16:44:50,381 copying ClearMap/Scripts/CellMap_zl_20221117.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Scripts 2026-02-06T16:44:50,384 copying ClearMap/Scripts/TubeMap.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Scripts 2026-02-06T16:44:50,388 creating build/lib.linux-armv7l-cpython-311/ClearMap/Utils 2026-02-06T16:44:50,390 copying ClearMap/Utils/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Utils 2026-02-06T16:44:50,392 copying ClearMap/Utils/Sound.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Utils 2026-02-06T16:44:50,394 copying ClearMap/Utils/exceptions.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Utils 2026-02-06T16:44:50,396 copying ClearMap/Utils/HierarchicalDict.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Utils 2026-02-06T16:44:50,399 copying ClearMap/Utils/Timer.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Utils 2026-02-06T16:44:50,401 copying ClearMap/Utils/RegularExpression.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Utils 2026-02-06T16:44:50,405 copying ClearMap/Utils/Formatting.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Utils 2026-02-06T16:44:50,407 copying ClearMap/Utils/utilities.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Utils 2026-02-06T16:44:50,410 copying ClearMap/Utils/Lazy.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Utils 2026-02-06T16:44:50,412 copying ClearMap/Utils/TagExpression.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Utils 2026-02-06T16:44:50,415 creating build/lib.linux-armv7l-cpython-311/ClearMap/Visualization 2026-02-06T16:44:50,417 copying ClearMap/Visualization/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization 2026-02-06T16:44:50,419 copying ClearMap/Visualization/Color.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization 2026-02-06T16:44:50,423 copying ClearMap/Visualization/Plot3d.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization 2026-02-06T16:44:50,425 running egg_info 2026-02-06T16:44:50,440 writing clearmap_nmr.egg-info/PKG-INFO 2026-02-06T16:44:50,444 writing dependency_links to clearmap_nmr.egg-info/dependency_links.txt 2026-02-06T16:44:50,446 writing requirements to clearmap_nmr.egg-info/requires.txt 2026-02-06T16:44:50,448 writing top-level names to clearmap_nmr.egg-info/top_level.txt 2026-02-06T16:44:50,484 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:50,485 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:50,486 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:50,486 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:50,487 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:50,488 dependency 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won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:50,491 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:50,491 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:50,492 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:50,492 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:50,493 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:50,494 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:50,494 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:50,495 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:50,495 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:50,496 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:50,497 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:50,497 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:50,498 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:50,498 dependency 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won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:50,502 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:50,502 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:50,503 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:50,503 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:50,504 dependency 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won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:50,507 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:50,507 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:50,508 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:50,508 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:50,509 dependency 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/tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:50,519 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:50,520 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:50,520 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:50,521 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:50,522 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:50,522 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:50,522 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:50,523 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:50,523 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:50,524 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:50,524 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:50,525 dependency /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-02-06T16:44:50,528 reading manifest file 'clearmap_nmr.egg-info/SOURCES.txt' 2026-02-06T16:44:50,544 reading manifest template 'MANIFEST.in' 2026-02-06T16:44:50,998 warning: no previously-included files matching '*.so' found anywhere in distribution 2026-02-06T16:44:51,001 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-02-06T16:44:51,002 adding license file 'LICENSE' 2026-02-06T16:44:51,002 adding license file 'LICENSE.txt' 2026-02-06T16:44:51,027 writing manifest file 'clearmap_nmr.egg-info/SOURCES.txt' 2026-02-06T16:44:51,031 /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.Alignment.Stitching._Todo' is absent from the `packages` configuration. 2026-02-06T16:44:51,032 !! 2026-02-06T16:44:51,034 ******************************************************************************** 2026-02-06T16:44:51,035 ############################ 2026-02-06T16:44:51,035 # Package would be ignored # 2026-02-06T16:44:51,036 ############################ 2026-02-06T16:44:51,037 Python recognizes 'ClearMap.Alignment.Stitching._Todo' as an importable package[^1], 2026-02-06T16:44:51,037 but it is absent from setuptools' `packages` configuration. 2026-02-06T16:44:51,039 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-06T16:44:51,040 package, please make sure that 'ClearMap.Alignment.Stitching._Todo' is explicitly added 2026-02-06T16:44:51,041 to the `packages` configuration field. 2026-02-06T16:44:51,042 Alternatively, you can also rely on setuptools' discovery methods 2026-02-06T16:44:51,043 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-06T16:44:51,044 instead of `find_packages(...)`/`find:`). 2026-02-06T16:44:51,045 You can read more about "package discovery" on setuptools documentation page: 2026-02-06T16:44:51,046 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-06T16:44:51,047 If you don't want 'ClearMap.Alignment.Stitching._Todo' to be distributed and are 2026-02-06T16:44:51,048 already explicitly excluding 'ClearMap.Alignment.Stitching._Todo' via 2026-02-06T16:44:51,048 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-06T16:44:51,049 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-06T16:44:51,049 combination with a more fine grained `package-data` configuration. 2026-02-06T16:44:51,050 You can read more about "package data files" on setuptools documentation page: 2026-02-06T16:44:51,051 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-06T16:44:51,053 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-06T16:44:51,053 even if it does not contain any `.py` files. 2026-02-06T16:44:51,054 On the other hand, currently there is no concept of package data 2026-02-06T16:44:51,054 directory, all directories are treated like packages. 2026-02-06T16:44:51,055 ******************************************************************************** 2026-02-06T16:44:51,056 !! 2026-02-06T16:44:51,056 check.warn(importable) 2026-02-06T16:44:51,056 /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.Analysis.Measurements._Todo' is absent from the `packages` configuration. 2026-02-06T16:44:51,057 !! 2026-02-06T16:44:51,058 ******************************************************************************** 2026-02-06T16:44:51,059 ############################ 2026-02-06T16:44:51,060 # Package would be ignored # 2026-02-06T16:44:51,060 ############################ 2026-02-06T16:44:51,061 Python recognizes 'ClearMap.Analysis.Measurements._Todo' as an importable package[^1], 2026-02-06T16:44:51,061 but it is absent from setuptools' `packages` configuration. 2026-02-06T16:44:51,062 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-06T16:44:51,063 package, please make sure that 'ClearMap.Analysis.Measurements._Todo' is explicitly added 2026-02-06T16:44:51,064 to the `packages` configuration field. 2026-02-06T16:44:51,065 Alternatively, you can also rely on setuptools' discovery methods 2026-02-06T16:44:51,065 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-06T16:44:51,065 instead of `find_packages(...)`/`find:`). 2026-02-06T16:44:51,066 You can read more about "package discovery" on setuptools documentation page: 2026-02-06T16:44:51,067 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-06T16:44:51,068 If you don't want 'ClearMap.Analysis.Measurements._Todo' to be distributed and are 2026-02-06T16:44:51,069 already explicitly excluding 'ClearMap.Analysis.Measurements._Todo' via 2026-02-06T16:44:51,069 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-06T16:44:51,070 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-06T16:44:51,070 combination with a more fine grained `package-data` configuration. 2026-02-06T16:44:51,071 You can read more about "package data files" on setuptools documentation page: 2026-02-06T16:44:51,072 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-06T16:44:51,074 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-06T16:44:51,075 even if it does not contain any `.py` files. 2026-02-06T16:44:51,075 On the other hand, currently there is no concept of package data 2026-02-06T16:44:51,075 directory, all directories are treated like packages. 2026-02-06T16:44:51,076 ******************************************************************************** 2026-02-06T16:44:51,076 !! 2026-02-06T16:44:51,077 check.warn(importable) 2026-02-06T16:44:51,077 /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.External' is absent from the `packages` configuration. 2026-02-06T16:44:51,077 !! 2026-02-06T16:44:51,078 ******************************************************************************** 2026-02-06T16:44:51,079 ############################ 2026-02-06T16:44:51,079 # Package would be ignored # 2026-02-06T16:44:51,079 ############################ 2026-02-06T16:44:51,080 Python recognizes 'ClearMap.External' as an importable package[^1], 2026-02-06T16:44:51,080 but it is absent from setuptools' `packages` configuration. 2026-02-06T16:44:51,081 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-06T16:44:51,082 package, please make sure that 'ClearMap.External' is explicitly added 2026-02-06T16:44:51,082 to the `packages` configuration field. 2026-02-06T16:44:51,083 Alternatively, you can also rely on setuptools' discovery methods 2026-02-06T16:44:51,083 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-06T16:44:51,084 instead of `find_packages(...)`/`find:`). 2026-02-06T16:44:51,085 You can read more about "package discovery" on setuptools documentation page: 2026-02-06T16:44:51,086 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-06T16:44:51,088 If you don't want 'ClearMap.External' to be distributed and are 2026-02-06T16:44:51,088 already explicitly excluding 'ClearMap.External' via 2026-02-06T16:44:51,089 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-06T16:44:51,089 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-06T16:44:51,090 combination with a more fine grained `package-data` configuration. 2026-02-06T16:44:51,091 You can read more about "package data files" on setuptools documentation page: 2026-02-06T16:44:51,092 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-06T16:44:51,094 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-06T16:44:51,094 even if it does not contain any `.py` files. 2026-02-06T16:44:51,094 On the other hand, currently there is no concept of package data 2026-02-06T16:44:51,095 directory, all directories are treated like packages. 2026-02-06T16:44:51,096 ******************************************************************************** 2026-02-06T16:44:51,096 !! 2026-02-06T16:44:51,097 check.warn(importable) 2026-02-06T16:44:51,097 /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.External.elastix.src.Testing' is absent from the `packages` configuration. 2026-02-06T16:44:51,098 !! 2026-02-06T16:44:51,099 ******************************************************************************** 2026-02-06T16:44:51,100 ############################ 2026-02-06T16:44:51,100 # Package would be ignored # 2026-02-06T16:44:51,101 ############################ 2026-02-06T16:44:51,101 Python recognizes 'ClearMap.External.elastix.src.Testing' as an importable package[^1], 2026-02-06T16:44:51,102 but it is absent from setuptools' `packages` configuration. 2026-02-06T16:44:51,103 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-06T16:44:51,103 package, please make sure that 'ClearMap.External.elastix.src.Testing' is explicitly added 2026-02-06T16:44:51,104 to the `packages` configuration field. 2026-02-06T16:44:51,104 Alternatively, you can also rely on setuptools' discovery methods 2026-02-06T16:44:51,105 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-06T16:44:51,105 instead of `find_packages(...)`/`find:`). 2026-02-06T16:44:51,106 You can read more about "package discovery" on setuptools documentation page: 2026-02-06T16:44:51,106 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-06T16:44:51,107 If you don't want 'ClearMap.External.elastix.src.Testing' to be distributed and are 2026-02-06T16:44:51,108 already explicitly excluding 'ClearMap.External.elastix.src.Testing' via 2026-02-06T16:44:51,108 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-06T16:44:51,108 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-06T16:44:51,109 combination with a more fine grained `package-data` configuration. 2026-02-06T16:44:51,109 You can read more about "package data files" on setuptools documentation page: 2026-02-06T16:44:51,110 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-06T16:44:51,112 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-06T16:44:51,112 even if it does not contain any `.py` files. 2026-02-06T16:44:51,113 On the other hand, currently there is no concept of package data 2026-02-06T16:44:51,113 directory, all directories are treated like packages. 2026-02-06T16:44:51,114 ******************************************************************************** 2026-02-06T16:44:51,115 !! 2026-02-06T16:44:51,116 check.warn(importable) 2026-02-06T16:44:51,116 /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.External.elastix.src.tools' is absent from the `packages` configuration. 2026-02-06T16:44:51,117 !! 2026-02-06T16:44:51,118 ******************************************************************************** 2026-02-06T16:44:51,118 ############################ 2026-02-06T16:44:51,119 # Package would be ignored # 2026-02-06T16:44:51,120 ############################ 2026-02-06T16:44:51,120 Python recognizes 'ClearMap.External.elastix.src.tools' as an importable package[^1], 2026-02-06T16:44:51,121 but it is absent from setuptools' `packages` configuration. 2026-02-06T16:44:51,122 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-06T16:44:51,122 package, please make sure that 'ClearMap.External.elastix.src.tools' is explicitly added 2026-02-06T16:44:51,123 to the `packages` configuration field. 2026-02-06T16:44:51,124 Alternatively, you can also rely on setuptools' discovery methods 2026-02-06T16:44:51,124 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-06T16:44:51,125 instead of `find_packages(...)`/`find:`). 2026-02-06T16:44:51,126 You can read more about "package discovery" on setuptools documentation page: 2026-02-06T16:44:51,127 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-06T16:44:51,128 If you don't want 'ClearMap.External.elastix.src.tools' to be distributed and are 2026-02-06T16:44:51,129 already explicitly excluding 'ClearMap.External.elastix.src.tools' via 2026-02-06T16:44:51,129 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-06T16:44:51,130 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-06T16:44:51,131 combination with a more fine grained `package-data` configuration. 2026-02-06T16:44:51,131 You can read more about "package data files" on setuptools documentation page: 2026-02-06T16:44:51,132 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-06T16:44:51,133 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-06T16:44:51,134 even if it does not contain any `.py` files. 2026-02-06T16:44:51,134 On the other hand, currently there is no concept of package data 2026-02-06T16:44:51,135 directory, all directories are treated like packages. 2026-02-06T16:44:51,135 ******************************************************************************** 2026-02-06T16:44:51,136 !! 2026-02-06T16:44:51,137 check.warn(importable) 2026-02-06T16:44:51,137 /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.External.geodesic_distance' is absent from the `packages` configuration. 2026-02-06T16:44:51,138 !! 2026-02-06T16:44:51,139 ******************************************************************************** 2026-02-06T16:44:51,139 ############################ 2026-02-06T16:44:51,140 # Package would be ignored # 2026-02-06T16:44:51,140 ############################ 2026-02-06T16:44:51,141 Python recognizes 'ClearMap.External.geodesic_distance' as an importable package[^1], 2026-02-06T16:44:51,141 but it is absent from setuptools' `packages` configuration. 2026-02-06T16:44:51,142 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-06T16:44:51,143 package, please make sure that 'ClearMap.External.geodesic_distance' is explicitly added 2026-02-06T16:44:51,143 to the `packages` configuration field. 2026-02-06T16:44:51,145 Alternatively, you can also rely on setuptools' discovery methods 2026-02-06T16:44:51,145 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-06T16:44:51,146 instead of `find_packages(...)`/`find:`). 2026-02-06T16:44:51,147 You can read more about "package discovery" on setuptools documentation page: 2026-02-06T16:44:51,148 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-06T16:44:51,149 If you don't want 'ClearMap.External.geodesic_distance' to be distributed and are 2026-02-06T16:44:51,150 already explicitly excluding 'ClearMap.External.geodesic_distance' via 2026-02-06T16:44:51,150 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-06T16:44:51,151 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-06T16:44:51,151 combination with a more fine grained `package-data` configuration. 2026-02-06T16:44:51,153 You can read more about "package data files" on setuptools documentation page: 2026-02-06T16:44:51,154 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-06T16:44:51,156 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-06T16:44:51,156 even if it does not contain any `.py` files. 2026-02-06T16:44:51,157 On the other hand, currently there is no concept of package data 2026-02-06T16:44:51,157 directory, all directories are treated like packages. 2026-02-06T16:44:51,158 ******************************************************************************** 2026-02-06T16:44:51,159 !! 2026-02-06T16:44:51,160 check.warn(importable) 2026-02-06T16:44:51,161 /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.GF_extras.clearmap1_GF' is absent from the `packages` configuration. 2026-02-06T16:44:51,161 !! 2026-02-06T16:44:51,162 ******************************************************************************** 2026-02-06T16:44:51,163 ############################ 2026-02-06T16:44:51,164 # Package would be ignored # 2026-02-06T16:44:51,165 ############################ 2026-02-06T16:44:51,165 Python recognizes 'ClearMap.GF_extras.clearmap1_GF' as an importable package[^1], 2026-02-06T16:44:51,166 but it is absent from setuptools' `packages` configuration. 2026-02-06T16:44:51,167 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-06T16:44:51,168 package, please make sure that 'ClearMap.GF_extras.clearmap1_GF' is explicitly added 2026-02-06T16:44:51,168 to the `packages` configuration field. 2026-02-06T16:44:51,169 Alternatively, you can also rely on setuptools' discovery methods 2026-02-06T16:44:51,169 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-06T16:44:51,170 instead of `find_packages(...)`/`find:`). 2026-02-06T16:44:51,171 You can read more about "package discovery" on setuptools documentation page: 2026-02-06T16:44:51,172 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-06T16:44:51,173 If you don't want 'ClearMap.GF_extras.clearmap1_GF' to be distributed and are 2026-02-06T16:44:51,173 already explicitly excluding 'ClearMap.GF_extras.clearmap1_GF' via 2026-02-06T16:44:51,174 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-06T16:44:51,174 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-06T16:44:51,175 combination with a more fine grained `package-data` configuration. 2026-02-06T16:44:51,176 You can read more about "package data files" on setuptools documentation page: 2026-02-06T16:44:51,177 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-06T16:44:51,178 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-06T16:44:51,179 even if it does not contain any `.py` files. 2026-02-06T16:44:51,179 On the other hand, currently there is no concept of package data 2026-02-06T16:44:51,180 directory, all directories are treated like packages. 2026-02-06T16:44:51,180 ******************************************************************************** 2026-02-06T16:44:51,181 !! 2026-02-06T16:44:51,182 check.warn(importable) 2026-02-06T16:44:51,182 /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.GF_extras.clearmap1_GF.Analysis' is absent from the `packages` configuration. 2026-02-06T16:44:51,182 !! 2026-02-06T16:44:51,184 ******************************************************************************** 2026-02-06T16:44:51,184 ############################ 2026-02-06T16:44:51,185 # Package would be ignored # 2026-02-06T16:44:51,185 ############################ 2026-02-06T16:44:51,186 Python recognizes 'ClearMap.GF_extras.clearmap1_GF.Analysis' as an importable package[^1], 2026-02-06T16:44:51,186 but it is absent from setuptools' `packages` configuration. 2026-02-06T16:44:51,188 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-06T16:44:51,188 package, please make sure that 'ClearMap.GF_extras.clearmap1_GF.Analysis' is explicitly added 2026-02-06T16:44:51,189 to the `packages` configuration field. 2026-02-06T16:44:51,190 Alternatively, you can also rely on setuptools' discovery methods 2026-02-06T16:44:51,191 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-06T16:44:51,191 instead of `find_packages(...)`/`find:`). 2026-02-06T16:44:51,192 You can read more about "package discovery" on setuptools documentation page: 2026-02-06T16:44:51,193 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-06T16:44:51,194 If you don't want 'ClearMap.GF_extras.clearmap1_GF.Analysis' to be distributed and are 2026-02-06T16:44:51,195 already explicitly excluding 'ClearMap.GF_extras.clearmap1_GF.Analysis' via 2026-02-06T16:44:51,195 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-06T16:44:51,196 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-06T16:44:51,196 combination with a more fine grained `package-data` configuration. 2026-02-06T16:44:51,197 You can read more about "package data files" on setuptools documentation page: 2026-02-06T16:44:51,198 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-06T16:44:51,199 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-06T16:44:51,199 even if it does not contain any `.py` files. 2026-02-06T16:44:51,200 On the other hand, currently there is no concept of package data 2026-02-06T16:44:51,200 directory, all directories are treated like packages. 2026-02-06T16:44:51,201 ******************************************************************************** 2026-02-06T16:44:51,202 !! 2026-02-06T16:44:51,202 check.warn(importable) 2026-02-06T16:44:51,203 /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.GF_extras.clearmap1_GF.ImageProcessing' is absent from the `packages` configuration. 2026-02-06T16:44:51,203 !! 2026-02-06T16:44:51,204 ******************************************************************************** 2026-02-06T16:44:51,205 ############################ 2026-02-06T16:44:51,205 # Package would be ignored # 2026-02-06T16:44:51,206 ############################ 2026-02-06T16:44:51,206 Python recognizes 'ClearMap.GF_extras.clearmap1_GF.ImageProcessing' as an importable package[^1], 2026-02-06T16:44:51,207 but it is absent from setuptools' `packages` configuration. 2026-02-06T16:44:51,208 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-06T16:44:51,208 package, please make sure that 'ClearMap.GF_extras.clearmap1_GF.ImageProcessing' is explicitly added 2026-02-06T16:44:51,209 to the `packages` configuration field. 2026-02-06T16:44:51,210 Alternatively, you can also rely on setuptools' discovery methods 2026-02-06T16:44:51,210 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-06T16:44:51,211 instead of `find_packages(...)`/`find:`). 2026-02-06T16:44:51,212 You can read more about "package discovery" on setuptools documentation page: 2026-02-06T16:44:51,213 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-06T16:44:51,214 If you don't want 'ClearMap.GF_extras.clearmap1_GF.ImageProcessing' to be distributed and are 2026-02-06T16:44:51,214 already explicitly excluding 'ClearMap.GF_extras.clearmap1_GF.ImageProcessing' via 2026-02-06T16:44:51,215 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-06T16:44:51,215 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-06T16:44:51,216 combination with a more fine grained `package-data` configuration. 2026-02-06T16:44:51,217 You can read more about "package data files" on setuptools documentation page: 2026-02-06T16:44:51,218 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-06T16:44:51,220 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-06T16:44:51,220 even if it does not contain any `.py` files. 2026-02-06T16:44:51,221 On the other hand, currently there is no concept of package data 2026-02-06T16:44:51,221 directory, all directories are treated like packages. 2026-02-06T16:44:51,222 ******************************************************************************** 2026-02-06T16:44:51,223 !! 2026-02-06T16:44:51,223 check.warn(importable) 2026-02-06T16:44:51,223 /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.GF_extras.clearmap1_GF.ImageProcessing.Filter' is absent from the `packages` configuration. 2026-02-06T16:44:51,224 !! 2026-02-06T16:44:51,225 ******************************************************************************** 2026-02-06T16:44:51,226 ############################ 2026-02-06T16:44:51,226 # Package would be ignored # 2026-02-06T16:44:51,226 ############################ 2026-02-06T16:44:51,227 Python recognizes 'ClearMap.GF_extras.clearmap1_GF.ImageProcessing.Filter' as an importable package[^1], 2026-02-06T16:44:51,227 but it is absent from setuptools' `packages` configuration. 2026-02-06T16:44:51,228 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-06T16:44:51,229 package, please make sure that 'ClearMap.GF_extras.clearmap1_GF.ImageProcessing.Filter' is explicitly added 2026-02-06T16:44:51,229 to the `packages` configuration field. 2026-02-06T16:44:51,230 Alternatively, you can also rely on setuptools' discovery methods 2026-02-06T16:44:51,231 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-06T16:44:51,231 instead of `find_packages(...)`/`find:`). 2026-02-06T16:44:51,232 You can read more about "package discovery" on setuptools documentation page: 2026-02-06T16:44:51,233 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-06T16:44:51,234 If you don't want 'ClearMap.GF_extras.clearmap1_GF.ImageProcessing.Filter' to be distributed and are 2026-02-06T16:44:51,235 already explicitly excluding 'ClearMap.GF_extras.clearmap1_GF.ImageProcessing.Filter' via 2026-02-06T16:44:51,235 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-06T16:44:51,236 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-06T16:44:51,236 combination with a more fine grained `package-data` configuration. 2026-02-06T16:44:51,238 You can read more about "package data files" on setuptools documentation page: 2026-02-06T16:44:51,239 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-06T16:44:51,241 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-06T16:44:51,241 even if it does not contain any `.py` files. 2026-02-06T16:44:51,242 On the other hand, currently there is no concept of package data 2026-02-06T16:44:51,242 directory, all directories are treated like packages. 2026-02-06T16:44:51,243 ******************************************************************************** 2026-02-06T16:44:51,244 !! 2026-02-06T16:44:51,244 check.warn(importable) 2026-02-06T16:44:51,245 /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.ImageProcessing.Filter.Rank._Todo.RankInterpolation' is absent from the `packages` configuration. 2026-02-06T16:44:51,246 !! 2026-02-06T16:44:51,247 ******************************************************************************** 2026-02-06T16:44:51,248 ############################ 2026-02-06T16:44:51,248 # Package would be ignored # 2026-02-06T16:44:51,249 ############################ 2026-02-06T16:44:51,249 Python recognizes 'ClearMap.ImageProcessing.Filter.Rank._Todo.RankInterpolation' as an importable package[^1], 2026-02-06T16:44:51,250 but it is absent from setuptools' `packages` configuration. 2026-02-06T16:44:51,251 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-06T16:44:51,251 package, please make sure that 'ClearMap.ImageProcessing.Filter.Rank._Todo.RankInterpolation' is explicitly added 2026-02-06T16:44:51,251 to the `packages` configuration field. 2026-02-06T16:44:51,252 Alternatively, you can also rely on setuptools' discovery methods 2026-02-06T16:44:51,253 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-06T16:44:51,253 instead of `find_packages(...)`/`find:`). 2026-02-06T16:44:51,254 You can read more about "package discovery" on setuptools documentation page: 2026-02-06T16:44:51,255 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-06T16:44:51,256 If you don't want 'ClearMap.ImageProcessing.Filter.Rank._Todo.RankInterpolation' to be distributed and are 2026-02-06T16:44:51,257 already explicitly excluding 'ClearMap.ImageProcessing.Filter.Rank._Todo.RankInterpolation' via 2026-02-06T16:44:51,257 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-06T16:44:51,258 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-06T16:44:51,258 combination with a more fine grained `package-data` configuration. 2026-02-06T16:44:51,259 You can read more about "package data files" on setuptools documentation page: 2026-02-06T16:44:51,260 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-06T16:44:51,262 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-06T16:44:51,262 even if it does not contain any `.py` files. 2026-02-06T16:44:51,263 On the other hand, currently there is no concept of package data 2026-02-06T16:44:51,263 directory, all directories are treated like packages. 2026-02-06T16:44:51,264 ******************************************************************************** 2026-02-06T16:44:51,265 !! 2026-02-06T16:44:51,265 check.warn(importable) 2026-02-06T16:44:51,266 /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.ImageProcessing.MachineLearning' is absent from the `packages` configuration. 2026-02-06T16:44:51,266 !! 2026-02-06T16:44:51,267 ******************************************************************************** 2026-02-06T16:44:51,268 ############################ 2026-02-06T16:44:51,268 # Package would be ignored # 2026-02-06T16:44:51,269 ############################ 2026-02-06T16:44:51,269 Python recognizes 'ClearMap.ImageProcessing.MachineLearning' as an importable package[^1], 2026-02-06T16:44:51,270 but it is absent from setuptools' `packages` configuration. 2026-02-06T16:44:51,271 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-06T16:44:51,272 package, please make sure that 'ClearMap.ImageProcessing.MachineLearning' is explicitly added 2026-02-06T16:44:51,272 to the `packages` configuration field. 2026-02-06T16:44:51,273 Alternatively, you can also rely on setuptools' discovery methods 2026-02-06T16:44:51,274 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-06T16:44:51,274 instead of `find_packages(...)`/`find:`). 2026-02-06T16:44:51,276 You can read more about "package discovery" on setuptools documentation page: 2026-02-06T16:44:51,277 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-06T16:44:51,278 If you don't want 'ClearMap.ImageProcessing.MachineLearning' to be distributed and are 2026-02-06T16:44:51,278 already explicitly excluding 'ClearMap.ImageProcessing.MachineLearning' via 2026-02-06T16:44:51,279 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-06T16:44:51,279 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-06T16:44:51,279 combination with a more fine grained `package-data` configuration. 2026-02-06T16:44:51,281 You can read more about "package data files" on setuptools documentation page: 2026-02-06T16:44:51,281 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-06T16:44:51,283 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-06T16:44:51,283 even if it does not contain any `.py` files. 2026-02-06T16:44:51,283 On the other hand, currently there is no concept of package data 2026-02-06T16:44:51,284 directory, all directories are treated like packages. 2026-02-06T16:44:51,284 ******************************************************************************** 2026-02-06T16:44:51,285 !! 2026-02-06T16:44:51,286 check.warn(importable) 2026-02-06T16:44:51,286 /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.ImageProcessing.MachineLearning.VesselFilling' is absent from the `packages` configuration. 2026-02-06T16:44:51,287 !! 2026-02-06T16:44:51,288 ******************************************************************************** 2026-02-06T16:44:51,288 ############################ 2026-02-06T16:44:51,289 # Package would be ignored # 2026-02-06T16:44:51,289 ############################ 2026-02-06T16:44:51,290 Python recognizes 'ClearMap.ImageProcessing.MachineLearning.VesselFilling' as an importable package[^1], 2026-02-06T16:44:51,290 but it is absent from setuptools' `packages` configuration. 2026-02-06T16:44:51,291 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-06T16:44:51,292 package, please make sure that 'ClearMap.ImageProcessing.MachineLearning.VesselFilling' is explicitly added 2026-02-06T16:44:51,292 to the `packages` configuration field. 2026-02-06T16:44:51,293 Alternatively, you can also rely on setuptools' discovery methods 2026-02-06T16:44:51,294 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-06T16:44:51,294 instead of `find_packages(...)`/`find:`). 2026-02-06T16:44:51,295 You can read more about "package discovery" on setuptools documentation page: 2026-02-06T16:44:51,296 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-06T16:44:51,297 If you don't want 'ClearMap.ImageProcessing.MachineLearning.VesselFilling' to be distributed and are 2026-02-06T16:44:51,298 already explicitly excluding 'ClearMap.ImageProcessing.MachineLearning.VesselFilling' via 2026-02-06T16:44:51,298 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-06T16:44:51,299 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-06T16:44:51,299 combination with a more fine grained `package-data` configuration. 2026-02-06T16:44:51,300 You can read more about "package data files" on setuptools documentation page: 2026-02-06T16:44:51,301 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-06T16:44:51,303 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-06T16:44:51,303 even if it does not contain any `.py` files. 2026-02-06T16:44:51,304 On the other hand, currently there is no concept of package data 2026-02-06T16:44:51,305 directory, all directories are treated like packages. 2026-02-06T16:44:51,305 ******************************************************************************** 2026-02-06T16:44:51,306 !! 2026-02-06T16:44:51,306 check.warn(importable) 2026-02-06T16:44:51,307 /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.ImageProcessing.MachineLearning.VesselFilling.Training' is absent from the `packages` configuration. 2026-02-06T16:44:51,307 !! 2026-02-06T16:44:51,308 ******************************************************************************** 2026-02-06T16:44:51,309 ############################ 2026-02-06T16:44:51,309 # Package would be ignored # 2026-02-06T16:44:51,309 ############################ 2026-02-06T16:44:51,310 Python recognizes 'ClearMap.ImageProcessing.MachineLearning.VesselFilling.Training' as an importable package[^1], 2026-02-06T16:44:51,310 but it is absent from setuptools' `packages` configuration. 2026-02-06T16:44:51,312 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-06T16:44:51,312 package, please make sure that 'ClearMap.ImageProcessing.MachineLearning.VesselFilling.Training' is explicitly added 2026-02-06T16:44:51,313 to the `packages` configuration field. 2026-02-06T16:44:51,314 Alternatively, you can also rely on setuptools' discovery methods 2026-02-06T16:44:51,314 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-06T16:44:51,315 instead of `find_packages(...)`/`find:`). 2026-02-06T16:44:51,316 You can read more about "package discovery" on setuptools documentation page: 2026-02-06T16:44:51,317 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-06T16:44:51,318 If you don't want 'ClearMap.ImageProcessing.MachineLearning.VesselFilling.Training' to be distributed and are 2026-02-06T16:44:51,319 already explicitly excluding 'ClearMap.ImageProcessing.MachineLearning.VesselFilling.Training' via 2026-02-06T16:44:51,319 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-06T16:44:51,320 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-06T16:44:51,320 combination with a more fine grained `package-data` configuration. 2026-02-06T16:44:51,321 You can read more about "package data files" on setuptools documentation page: 2026-02-06T16:44:51,322 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-06T16:44:51,324 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-06T16:44:51,325 even if it does not contain any `.py` files. 2026-02-06T16:44:51,326 On the other hand, currently there is no concept of package data 2026-02-06T16:44:51,326 directory, all directories are treated like packages. 2026-02-06T16:44:51,327 ******************************************************************************** 2026-02-06T16:44:51,328 !! 2026-02-06T16:44:51,329 check.warn(importable) 2026-02-06T16:44:51,329 /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.ImageProcessing.Thresholding._Todo.HysteresisThresholding' is absent from the `packages` configuration. 2026-02-06T16:44:51,330 !! 2026-02-06T16:44:51,332 ******************************************************************************** 2026-02-06T16:44:51,332 ############################ 2026-02-06T16:44:51,333 # Package would be ignored # 2026-02-06T16:44:51,334 ############################ 2026-02-06T16:44:51,334 Python recognizes 'ClearMap.ImageProcessing.Thresholding._Todo.HysteresisThresholding' as an importable package[^1], 2026-02-06T16:44:51,335 but it is absent from setuptools' `packages` configuration. 2026-02-06T16:44:51,336 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-06T16:44:51,336 package, please make sure that 'ClearMap.ImageProcessing.Thresholding._Todo.HysteresisThresholding' is explicitly added 2026-02-06T16:44:51,336 to the `packages` configuration field. 2026-02-06T16:44:51,337 Alternatively, you can also rely on setuptools' discovery methods 2026-02-06T16:44:51,338 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-06T16:44:51,338 instead of `find_packages(...)`/`find:`). 2026-02-06T16:44:51,339 You can read more about "package discovery" on setuptools documentation page: 2026-02-06T16:44:51,340 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-06T16:44:51,341 If you don't want 'ClearMap.ImageProcessing.Thresholding._Todo.HysteresisThresholding' to be distributed and are 2026-02-06T16:44:51,342 already explicitly excluding 'ClearMap.ImageProcessing.Thresholding._Todo.HysteresisThresholding' via 2026-02-06T16:44:51,342 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-06T16:44:51,343 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-06T16:44:51,343 combination with a more fine grained `package-data` configuration. 2026-02-06T16:44:51,344 You can read more about "package data files" on setuptools documentation page: 2026-02-06T16:44:51,345 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-06T16:44:51,347 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-06T16:44:51,347 even if it does not contain any `.py` files. 2026-02-06T16:44:51,348 On the other hand, currently there is no concept of package data 2026-02-06T16:44:51,348 directory, all directories are treated like packages. 2026-02-06T16:44:51,349 ******************************************************************************** 2026-02-06T16:44:51,350 !! 2026-02-06T16:44:51,350 check.warn(importable) 2026-02-06T16:44:51,351 /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.ImageProcessing.Thresholding._Todo.SeededThresholding' is absent from the `packages` configuration. 2026-02-06T16:44:51,352 !! 2026-02-06T16:44:51,353 ******************************************************************************** 2026-02-06T16:44:51,353 ############################ 2026-02-06T16:44:51,354 # Package would be ignored # 2026-02-06T16:44:51,354 ############################ 2026-02-06T16:44:51,355 Python recognizes 'ClearMap.ImageProcessing.Thresholding._Todo.SeededThresholding' as an importable package[^1], 2026-02-06T16:44:51,355 but it is absent from setuptools' `packages` configuration. 2026-02-06T16:44:51,356 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-06T16:44:51,357 package, please make sure that 'ClearMap.ImageProcessing.Thresholding._Todo.SeededThresholding' is explicitly added 2026-02-06T16:44:51,357 to the `packages` configuration field. 2026-02-06T16:44:51,359 Alternatively, you can also rely on setuptools' discovery methods 2026-02-06T16:44:51,359 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-06T16:44:51,360 instead of `find_packages(...)`/`find:`). 2026-02-06T16:44:51,361 You can read more about "package discovery" on setuptools documentation page: 2026-02-06T16:44:51,362 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-06T16:44:51,363 If you don't want 'ClearMap.ImageProcessing.Thresholding._Todo.SeededThresholding' to be distributed and are 2026-02-06T16:44:51,363 already explicitly excluding 'ClearMap.ImageProcessing.Thresholding._Todo.SeededThresholding' via 2026-02-06T16:44:51,364 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-06T16:44:51,364 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-06T16:44:51,364 combination with a more fine grained `package-data` configuration. 2026-02-06T16:44:51,365 You can read more about "package data files" on setuptools documentation page: 2026-02-06T16:44:51,366 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-06T16:44:51,368 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-06T16:44:51,368 even if it does not contain any `.py` files. 2026-02-06T16:44:51,369 On the other hand, currently there is no concept of package data 2026-02-06T16:44:51,369 directory, all directories are treated like packages. 2026-02-06T16:44:51,370 ******************************************************************************** 2026-02-06T16:44:51,371 !! 2026-02-06T16:44:51,371 check.warn(importable) 2026-02-06T16:44:51,372 /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.ParallelProcessing.DataProcessing._Old' is absent from the `packages` configuration. 2026-02-06T16:44:51,372 !! 2026-02-06T16:44:51,373 ******************************************************************************** 2026-02-06T16:44:51,374 ############################ 2026-02-06T16:44:51,374 # Package would be ignored # 2026-02-06T16:44:51,375 ############################ 2026-02-06T16:44:51,375 Python recognizes 'ClearMap.ParallelProcessing.DataProcessing._Old' as an importable package[^1], 2026-02-06T16:44:51,376 but it is absent from setuptools' `packages` configuration. 2026-02-06T16:44:51,377 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-06T16:44:51,377 package, please make sure that 'ClearMap.ParallelProcessing.DataProcessing._Old' is explicitly added 2026-02-06T16:44:51,378 to the `packages` configuration field. 2026-02-06T16:44:51,379 Alternatively, you can also rely on setuptools' discovery methods 2026-02-06T16:44:51,380 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-06T16:44:51,380 instead of `find_packages(...)`/`find:`). 2026-02-06T16:44:51,381 You can read more about "package discovery" on setuptools documentation page: 2026-02-06T16:44:51,382 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-06T16:44:51,384 If you don't want 'ClearMap.ParallelProcessing.DataProcessing._Old' to be distributed and are 2026-02-06T16:44:51,384 already explicitly excluding 'ClearMap.ParallelProcessing.DataProcessing._Old' via 2026-02-06T16:44:51,385 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-06T16:44:51,385 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-06T16:44:51,386 combination with a more fine grained `package-data` configuration. 2026-02-06T16:44:51,387 You can read more about "package data files" on setuptools documentation page: 2026-02-06T16:44:51,388 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-06T16:44:51,389 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-06T16:44:51,390 even if it does not contain any `.py` files. 2026-02-06T16:44:51,391 On the other hand, currently there is no concept of package data 2026-02-06T16:44:51,391 directory, all directories are treated like packages. 2026-02-06T16:44:51,392 ******************************************************************************** 2026-02-06T16:44:51,392 !! 2026-02-06T16:44:51,393 check.warn(importable) 2026-02-06T16:44:51,393 /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.Visualization.Matplotlib' is absent from the `packages` configuration. 2026-02-06T16:44:51,394 !! 2026-02-06T16:44:51,395 ******************************************************************************** 2026-02-06T16:44:51,395 ############################ 2026-02-06T16:44:51,396 # Package would be ignored # 2026-02-06T16:44:51,396 ############################ 2026-02-06T16:44:51,397 Python recognizes 'ClearMap.Visualization.Matplotlib' as an importable package[^1], 2026-02-06T16:44:51,397 but it is absent from setuptools' `packages` configuration. 2026-02-06T16:44:51,398 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-06T16:44:51,399 package, please make sure that 'ClearMap.Visualization.Matplotlib' is explicitly added 2026-02-06T16:44:51,399 to the `packages` configuration field. 2026-02-06T16:44:51,400 Alternatively, you can also rely on setuptools' discovery methods 2026-02-06T16:44:51,401 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-06T16:44:51,401 instead of `find_packages(...)`/`find:`). 2026-02-06T16:44:51,403 You can read more about "package discovery" on setuptools documentation page: 2026-02-06T16:44:51,404 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-06T16:44:51,405 If you don't want 'ClearMap.Visualization.Matplotlib' to be distributed and are 2026-02-06T16:44:51,405 already explicitly excluding 'ClearMap.Visualization.Matplotlib' via 2026-02-06T16:44:51,406 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-06T16:44:51,406 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-06T16:44:51,407 combination with a more fine grained `package-data` configuration. 2026-02-06T16:44:51,408 You can read more about "package data files" on setuptools documentation page: 2026-02-06T16:44:51,409 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-06T16:44:51,411 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-06T16:44:51,411 even if it does not contain any `.py` files. 2026-02-06T16:44:51,412 On the other hand, currently there is no concept of package data 2026-02-06T16:44:51,412 directory, all directories are treated like packages. 2026-02-06T16:44:51,413 ******************************************************************************** 2026-02-06T16:44:51,414 !! 2026-02-06T16:44:51,415 check.warn(importable) 2026-02-06T16:44:51,415 /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.Visualization.Mesh' is absent from the `packages` configuration. 2026-02-06T16:44:51,416 !! 2026-02-06T16:44:51,417 ******************************************************************************** 2026-02-06T16:44:51,418 ############################ 2026-02-06T16:44:51,418 # Package would be ignored # 2026-02-06T16:44:51,420 ############################ 2026-02-06T16:44:51,420 Python recognizes 'ClearMap.Visualization.Mesh' as an importable package[^1], 2026-02-06T16:44:51,421 but it is absent from setuptools' `packages` configuration. 2026-02-06T16:44:51,422 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-06T16:44:51,423 package, please make sure that 'ClearMap.Visualization.Mesh' is explicitly added 2026-02-06T16:44:51,424 to the `packages` configuration field. 2026-02-06T16:44:51,425 Alternatively, you can also rely on setuptools' discovery methods 2026-02-06T16:44:51,425 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-06T16:44:51,426 instead of `find_packages(...)`/`find:`). 2026-02-06T16:44:51,427 You can read more about "package discovery" on setuptools documentation page: 2026-02-06T16:44:51,428 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-06T16:44:51,429 If you don't want 'ClearMap.Visualization.Mesh' to be distributed and are 2026-02-06T16:44:51,429 already explicitly excluding 'ClearMap.Visualization.Mesh' via 2026-02-06T16:44:51,430 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-06T16:44:51,430 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-06T16:44:51,431 combination with a more fine grained `package-data` configuration. 2026-02-06T16:44:51,432 You can read more about "package data files" on setuptools documentation page: 2026-02-06T16:44:51,433 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-06T16:44:51,434 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-06T16:44:51,435 even if it does not contain any `.py` files. 2026-02-06T16:44:51,435 On the other hand, currently there is no concept of package data 2026-02-06T16:44:51,436 directory, all directories are treated like packages. 2026-02-06T16:44:51,436 ******************************************************************************** 2026-02-06T16:44:51,437 !! 2026-02-06T16:44:51,438 check.warn(importable) 2026-02-06T16:44:51,438 /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.Visualization.Qt' is absent from the `packages` configuration. 2026-02-06T16:44:51,439 !! 2026-02-06T16:44:51,440 ******************************************************************************** 2026-02-06T16:44:51,441 ############################ 2026-02-06T16:44:51,441 # Package would be ignored # 2026-02-06T16:44:51,442 ############################ 2026-02-06T16:44:51,442 Python recognizes 'ClearMap.Visualization.Qt' as an importable package[^1], 2026-02-06T16:44:51,443 but it is absent from setuptools' `packages` configuration. 2026-02-06T16:44:51,444 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-06T16:44:51,444 package, please make sure that 'ClearMap.Visualization.Qt' is explicitly added 2026-02-06T16:44:51,445 to the `packages` configuration field. 2026-02-06T16:44:51,446 Alternatively, you can also rely on setuptools' discovery methods 2026-02-06T16:44:51,447 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-06T16:44:51,447 instead of `find_packages(...)`/`find:`). 2026-02-06T16:44:51,448 You can read more about "package discovery" on setuptools documentation page: 2026-02-06T16:44:51,449 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-06T16:44:51,450 If you don't want 'ClearMap.Visualization.Qt' to be distributed and are 2026-02-06T16:44:51,451 already explicitly excluding 'ClearMap.Visualization.Qt' via 2026-02-06T16:44:51,452 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-06T16:44:51,452 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-06T16:44:51,453 combination with a more fine grained `package-data` configuration. 2026-02-06T16:44:51,454 You can read more about "package data files" on setuptools documentation page: 2026-02-06T16:44:51,455 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-06T16:44:51,456 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-06T16:44:51,457 even if it does not contain any `.py` files. 2026-02-06T16:44:51,457 On the other hand, currently there is no concept of package data 2026-02-06T16:44:51,458 directory, all directories are treated like packages. 2026-02-06T16:44:51,458 ******************************************************************************** 2026-02-06T16:44:51,459 !! 2026-02-06T16:44:51,459 check.warn(importable) 2026-02-06T16:44:51,460 /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.Visualization.Qt._Todo' is absent from the `packages` configuration. 2026-02-06T16:44:51,461 !! 2026-02-06T16:44:51,461 ******************************************************************************** 2026-02-06T16:44:51,462 ############################ 2026-02-06T16:44:51,462 # Package would be ignored # 2026-02-06T16:44:51,463 ############################ 2026-02-06T16:44:51,463 Python recognizes 'ClearMap.Visualization.Qt._Todo' as an importable package[^1], 2026-02-06T16:44:51,464 but it is absent from setuptools' `packages` configuration. 2026-02-06T16:44:51,465 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-06T16:44:51,465 package, please make sure that 'ClearMap.Visualization.Qt._Todo' is explicitly added 2026-02-06T16:44:51,466 to the `packages` configuration field. 2026-02-06T16:44:51,467 Alternatively, you can also rely on setuptools' discovery methods 2026-02-06T16:44:51,467 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-06T16:44:51,468 instead of `find_packages(...)`/`find:`). 2026-02-06T16:44:51,469 You can read more about "package discovery" on setuptools documentation page: 2026-02-06T16:44:51,470 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-06T16:44:51,471 If you don't want 'ClearMap.Visualization.Qt._Todo' to be distributed and are 2026-02-06T16:44:51,472 already explicitly excluding 'ClearMap.Visualization.Qt._Todo' via 2026-02-06T16:44:51,472 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-06T16:44:51,473 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-06T16:44:51,473 combination with a more fine grained `package-data` configuration. 2026-02-06T16:44:51,474 You can read more about "package data files" on setuptools documentation page: 2026-02-06T16:44:51,475 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-06T16:44:51,477 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-06T16:44:51,478 even if it does not contain any `.py` files. 2026-02-06T16:44:51,478 On the other hand, currently there is no concept of package data 2026-02-06T16:44:51,479 directory, all directories are treated like packages. 2026-02-06T16:44:51,479 ******************************************************************************** 2026-02-06T16:44:51,480 !! 2026-02-06T16:44:51,481 check.warn(importable) 2026-02-06T16:44:51,481 /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.Visualization.Qt._Todo.GUI' is absent from the `packages` configuration. 2026-02-06T16:44:51,482 !! 2026-02-06T16:44:51,483 ******************************************************************************** 2026-02-06T16:44:51,484 ############################ 2026-02-06T16:44:51,484 # Package would be ignored # 2026-02-06T16:44:51,484 ############################ 2026-02-06T16:44:51,485 Python recognizes 'ClearMap.Visualization.Qt._Todo.GUI' as an importable package[^1], 2026-02-06T16:44:51,485 but it is absent from setuptools' `packages` configuration. 2026-02-06T16:44:51,486 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-06T16:44:51,487 package, please make sure that 'ClearMap.Visualization.Qt._Todo.GUI' is explicitly added 2026-02-06T16:44:51,487 to the `packages` configuration field. 2026-02-06T16:44:51,488 Alternatively, you can also rely on setuptools' discovery methods 2026-02-06T16:44:51,489 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-06T16:44:51,489 instead of `find_packages(...)`/`find:`). 2026-02-06T16:44:51,490 You can read more about "package discovery" on setuptools documentation page: 2026-02-06T16:44:51,491 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-06T16:44:51,492 If you don't want 'ClearMap.Visualization.Qt._Todo.GUI' to be distributed and are 2026-02-06T16:44:51,493 already explicitly excluding 'ClearMap.Visualization.Qt._Todo.GUI' via 2026-02-06T16:44:51,493 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-06T16:44:51,494 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-06T16:44:51,494 combination with a more fine grained `package-data` configuration. 2026-02-06T16:44:51,495 You can read more about "package data files" on setuptools documentation page: 2026-02-06T16:44:51,496 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-06T16:44:51,498 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-06T16:44:51,498 even if it does not contain any `.py` files. 2026-02-06T16:44:51,499 On the other hand, currently there is no concept of package data 2026-02-06T16:44:51,499 directory, all directories are treated like packages. 2026-02-06T16:44:51,500 ******************************************************************************** 2026-02-06T16:44:51,501 !! 2026-02-06T16:44:51,501 check.warn(importable) 2026-02-06T16:44:51,502 /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.Visualization.Vispy' is absent from the `packages` configuration. 2026-02-06T16:44:51,502 !! 2026-02-06T16:44:51,504 ******************************************************************************** 2026-02-06T16:44:51,504 ############################ 2026-02-06T16:44:51,505 # Package would be ignored # 2026-02-06T16:44:51,505 ############################ 2026-02-06T16:44:51,506 Python recognizes 'ClearMap.Visualization.Vispy' as an importable package[^1], 2026-02-06T16:44:51,506 but it is absent from setuptools' `packages` configuration. 2026-02-06T16:44:51,508 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-06T16:44:51,508 package, please make sure that 'ClearMap.Visualization.Vispy' is explicitly added 2026-02-06T16:44:51,509 to the `packages` configuration field. 2026-02-06T16:44:51,510 Alternatively, you can also rely on setuptools' discovery methods 2026-02-06T16:44:51,511 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-06T16:44:51,511 instead of `find_packages(...)`/`find:`). 2026-02-06T16:44:51,512 You can read more about "package discovery" on setuptools documentation page: 2026-02-06T16:44:51,513 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-06T16:44:51,514 If you don't want 'ClearMap.Visualization.Vispy' to be distributed and are 2026-02-06T16:44:51,515 already explicitly excluding 'ClearMap.Visualization.Vispy' via 2026-02-06T16:44:51,515 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-06T16:44:51,516 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-06T16:44:51,516 combination with a more fine grained `package-data` configuration. 2026-02-06T16:44:51,517 You can read more about "package data files" on setuptools documentation page: 2026-02-06T16:44:51,518 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-06T16:44:51,519 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-06T16:44:51,520 even if it does not contain any `.py` files. 2026-02-06T16:44:51,520 On the other hand, currently there is no concept of package data 2026-02-06T16:44:51,521 directory, all directories are treated like packages. 2026-02-06T16:44:51,521 ******************************************************************************** 2026-02-06T16:44:51,523 !! 2026-02-06T16:44:51,523 check.warn(importable) 2026-02-06T16:44:51,524 /tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'ClearMap.Visualization._Todo' is absent from the `packages` configuration. 2026-02-06T16:44:51,524 !! 2026-02-06T16:44:51,525 ******************************************************************************** 2026-02-06T16:44:51,525 ############################ 2026-02-06T16:44:51,526 # Package would be ignored # 2026-02-06T16:44:51,526 ############################ 2026-02-06T16:44:51,527 Python recognizes 'ClearMap.Visualization._Todo' as an importable package[^1], 2026-02-06T16:44:51,527 but it is absent from setuptools' `packages` configuration. 2026-02-06T16:44:51,529 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-06T16:44:51,529 package, please make sure that 'ClearMap.Visualization._Todo' is explicitly added 2026-02-06T16:44:51,530 to the `packages` configuration field. 2026-02-06T16:44:51,531 Alternatively, you can also rely on setuptools' discovery methods 2026-02-06T16:44:51,531 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-06T16:44:51,532 instead of `find_packages(...)`/`find:`). 2026-02-06T16:44:51,533 You can read more about "package discovery" on setuptools documentation page: 2026-02-06T16:44:51,534 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-06T16:44:51,535 If you don't want 'ClearMap.Visualization._Todo' to be distributed and are 2026-02-06T16:44:51,536 already explicitly excluding 'ClearMap.Visualization._Todo' via 2026-02-06T16:44:51,537 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-06T16:44:51,537 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-06T16:44:51,538 combination with a more fine grained `package-data` configuration. 2026-02-06T16:44:51,539 You can read more about "package data files" on setuptools documentation page: 2026-02-06T16:44:51,540 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-06T16:44:51,542 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-06T16:44:51,543 even if it does not contain any `.py` files. 2026-02-06T16:44:51,543 On the other hand, currently there is no concept of package data 2026-02-06T16:44:51,544 directory, all directories are treated like packages. 2026-02-06T16:44:51,545 ******************************************************************************** 2026-02-06T16:44:51,545 !! 2026-02-06T16:44:51,546 check.warn(importable) 2026-02-06T16:44:51,546 creating build/lib.linux-armv7l-cpython-311/ClearMap/Alignment/Stitching/_Todo 2026-02-06T16:44:51,547 copying ClearMap/Alignment/Stitching/_Todo/StitchingRigid.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Alignment/Stitching/_Todo 2026-02-06T16:44:51,547 copying ClearMap/Alignment/Stitching/_Todo/StitchingTera.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Alignment/Stitching/_Todo 2026-02-06T16:44:51,548 creating build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Measurements/_Todo 2026-02-06T16:44:51,548 copying ClearMap/Analysis/Measurements/_Todo/Orientation.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Measurements/_Todo 2026-02-06T16:44:51,549 copying ClearMap/Analysis/Measurements/_Todo/OrientationCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/Analysis/Measurements/_Todo 2026-02-06T16:44:51,549 creating build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/MachineLearning 2026-02-06T16:44:51,550 copying ClearMap/ImageProcessing/MachineLearning/Torch.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/MachineLearning 2026-02-06T16:44:51,550 copying ClearMap/ImageProcessing/MachineLearning/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/MachineLearning 2026-02-06T16:44:51,551 creating build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/MachineLearning/VesselFilling 2026-02-06T16:44:51,551 copying ClearMap/ImageProcessing/MachineLearning/VesselFilling/VesselFilling.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/MachineLearning/VesselFilling 2026-02-06T16:44:51,552 copying ClearMap/ImageProcessing/MachineLearning/VesselFilling/VesselFillingNetwork.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/MachineLearning/VesselFilling 2026-02-06T16:44:51,552 copying ClearMap/ImageProcessing/MachineLearning/VesselFilling/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/MachineLearning/VesselFilling 2026-02-06T16:44:51,553 creating build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/MachineLearning/VesselFilling/Training 2026-02-06T16:44:51,553 copying ClearMap/ImageProcessing/MachineLearning/VesselFilling/Training/class_balancing_loss.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/MachineLearning/VesselFilling/Training 2026-02-06T16:44:51,554 copying ClearMap/ImageProcessing/MachineLearning/VesselFilling/Training/contrast_loss.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/MachineLearning/VesselFilling/Training 2026-02-06T16:44:51,554 copying ClearMap/ImageProcessing/MachineLearning/VesselFilling/Training/dataset.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/MachineLearning/VesselFilling/Training 2026-02-06T16:44:51,555 copying ClearMap/ImageProcessing/MachineLearning/VesselFilling/Training/visualize.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/MachineLearning/VesselFilling/Training 2026-02-06T16:44:51,555 copying ClearMap/ImageProcessing/Binary/FillingCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Binary 2026-02-06T16:44:51,556 copying ClearMap/ImageProcessing/Clipping/ClippingCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Clipping 2026-02-06T16:44:51,556 copying ClearMap/ImageProcessing/Differentiation/HessianCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Differentiation 2026-02-06T16:44:51,557 copying ClearMap/ImageProcessing/Filter/Rank/BilateralCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank 2026-02-06T16:44:51,558 copying ClearMap/ImageProcessing/Filter/Rank/ParametricCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank 2026-02-06T16:44:51,558 copying ClearMap/ImageProcessing/Filter/Rank/PercentileCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank 2026-02-06T16:44:51,559 copying ClearMap/ImageProcessing/Filter/Rank/RankCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank 2026-02-06T16:44:51,559 copying ClearMap/ImageProcessing/Filter/Rank/RankCoreCode.pxd -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank 2026-02-06T16:44:51,560 copying ClearMap/ImageProcessing/Filter/Rank/RankCoreCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank 2026-02-06T16:44:51,560 creating build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank/_Todo/RankInterpolation 2026-02-06T16:44:51,561 copying ClearMap/ImageProcessing/Filter/Rank/_Todo/RankInterpolation/RankCoreCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank/_Todo/RankInterpolation 2026-02-06T16:44:51,561 copying ClearMap/ImageProcessing/Filter/Rank/_Todo/RankInterpolation/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank/_Todo/RankInterpolation 2026-02-06T16:44:51,562 copying ClearMap/ImageProcessing/Thresholding/ThresholdingCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Thresholding 2026-02-06T16:44:51,562 creating build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Thresholding/_Todo/HysteresisThresholding 2026-02-06T16:44:51,562 copying ClearMap/ImageProcessing/Thresholding/_Todo/HysteresisThresholding/HysteresisThresholding.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Thresholding/_Todo/HysteresisThresholding 2026-02-06T16:44:51,563 copying ClearMap/ImageProcessing/Thresholding/_Todo/HysteresisThresholding/HysteresisThresholdingCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Thresholding/_Todo/HysteresisThresholding 2026-02-06T16:44:51,564 copying ClearMap/ImageProcessing/Thresholding/_Todo/HysteresisThresholding/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Thresholding/_Todo/HysteresisThresholding 2026-02-06T16:44:51,564 creating build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Thresholding/_Todo/SeededThresholding 2026-02-06T16:44:51,565 copying ClearMap/ImageProcessing/Thresholding/_Todo/SeededThresholding/SeededThresholding.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Thresholding/_Todo/SeededThresholding 2026-02-06T16:44:51,565 copying ClearMap/ImageProcessing/Thresholding/_Todo/SeededThresholding/SeededThresholdingCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Thresholding/_Todo/SeededThresholding 2026-02-06T16:44:51,566 copying ClearMap/ImageProcessing/Thresholding/_Todo/SeededThresholding/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Thresholding/_Todo/SeededThresholding 2026-02-06T16:44:51,566 copying ClearMap/ImageProcessing/Tracing/TraceCode.hpp -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Tracing 2026-02-06T16:44:51,567 copying ClearMap/ImageProcessing/Tracing/TraceCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Tracing 2026-02-06T16:44:51,567 copying ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing 2026-02-06T16:44:51,568 copying ClearMap/ParallelProcessing/DataProcessing/ConvolvePointListCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing 2026-02-06T16:44:51,569 copying ClearMap/ParallelProcessing/DataProcessing/DevolvePointListCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing 2026-02-06T16:44:51,569 copying ClearMap/ParallelProcessing/DataProcessing/MeasurePointListCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing 2026-02-06T16:44:51,570 copying ClearMap/ParallelProcessing/DataProcessing/StatisticsPointListCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing 2026-02-06T16:44:51,571 creating build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing/_Old 2026-02-06T16:44:51,571 copying ClearMap/ParallelProcessing/DataProcessing/_Old/ArrayIOCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing/_Old 2026-02-06T16:44:51,572 copying ClearMap/ParallelProcessing/DataProcessing/_Old/ArrayProcessing.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing/_Old 2026-02-06T16:44:51,572 copying ClearMap/ParallelProcessing/DataProcessing/_Old/ArrayProcessingCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing/_Old 2026-02-06T16:44:51,573 copying ClearMap/ParallelProcessing/DataProcessing/_Old/ArrayProcessingCode_New.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing/_Old 2026-02-06T16:44:51,574 copying ClearMap/ParallelProcessing/DataProcessing/_Old/ArrayProcessingCode_New_2.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing/_Old 2026-02-06T16:44:51,574 copying ClearMap/ParallelProcessing/DataProcessing/_Old/ArrayProcessing_New.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing/_Old 2026-02-06T16:44:51,575 copying ClearMap/ParallelProcessing/DataProcessing/_Old/ArrayProcessing_New_2.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing/_Old 2026-02-06T16:44:51,575 copying ClearMap/ParallelProcessing/DataProcessing/_Old/ArraylIO.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing/_Old 2026-02-06T16:44:51,576 copying ClearMap/ParallelProcessing/DataProcessing/_Old/LargeData.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing/_Old 2026-02-06T16:44:51,577 copying ClearMap/ParallelProcessing/DataProcessing/_Old/LargeDataCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing/_Old 2026-02-06T16:44:51,577 copying ClearMap/ParallelProcessing/DataProcessing/_Old/LineIteration.hpp -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing/_Old 2026-02-06T16:44:51,578 copying ClearMap/ParallelProcessing/DataProcessing/_Old/MeasureExpression.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing/_Old 2026-02-06T16:44:51,578 copying ClearMap/ParallelProcessing/DataProcessing/_Old/MeasureExpressionCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing/_Old 2026-02-06T16:44:51,579 copying ClearMap/ParallelProcessing/DataProcessing/_Old/cython_correlate.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing/_Old 2026-02-06T16:44:51,579 copying ClearMap/ParallelProcessing/DataProcessing/_Old/setup.py -> build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing/_Old 2026-02-06T16:44:51,580 creating build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF 2026-02-06T16:44:51,580 copying ClearMap/GF_extras/clearmap1_GF/IO_GF.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF 2026-02-06T16:44:51,581 copying ClearMap/GF_extras/clearmap1_GF/ParameterTools.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF 2026-02-06T16:44:51,582 copying ClearMap/GF_extras/clearmap1_GF/ProcessWriter.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF 2026-02-06T16:44:51,582 copying ClearMap/GF_extras/clearmap1_GF/RAW.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF 2026-02-06T16:44:51,583 copying ClearMap/GF_extras/clearmap1_GF/Settings.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF 2026-02-06T16:44:51,584 copying ClearMap/GF_extras/clearmap1_GF/TIF.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF 2026-02-06T16:44:51,584 copying ClearMap/GF_extras/clearmap1_GF/clearmap1_parameter_file.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF 2026-02-06T16:44:51,585 creating build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/Analysis 2026-02-06T16:44:51,586 copying ClearMap/GF_extras/clearmap1_GF/Analysis/Voxelization.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/Analysis 2026-02-06T16:44:51,586 copying ClearMap/GF_extras/clearmap1_GF/Analysis/VoxelizationCode.pyx -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/Analysis 2026-02-06T16:44:51,587 copying ClearMap/GF_extras/clearmap1_GF/Analysis/Voxelization_GF.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/Analysis 2026-02-06T16:44:51,587 creating build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing 2026-02-06T16:44:51,587 copying ClearMap/GF_extras/clearmap1_GF/ImageProcessing/BackgroundRemoval.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing 2026-02-06T16:44:51,588 copying ClearMap/GF_extras/clearmap1_GF/ImageProcessing/CellDetection.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing 2026-02-06T16:44:51,588 copying ClearMap/GF_extras/clearmap1_GF/ImageProcessing/CellDetection_GF.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing 2026-02-06T16:44:51,589 copying ClearMap/GF_extras/clearmap1_GF/ImageProcessing/CellSizeDetection.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing 2026-02-06T16:44:51,589 copying ClearMap/GF_extras/clearmap1_GF/ImageProcessing/GreyReconstruction.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing 2026-02-06T16:44:51,590 copying ClearMap/GF_extras/clearmap1_GF/ImageProcessing/IlluminationCorrection.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing 2026-02-06T16:44:51,590 copying ClearMap/GF_extras/clearmap1_GF/ImageProcessing/ImageStatistics.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing 2026-02-06T16:44:51,591 copying ClearMap/GF_extras/clearmap1_GF/ImageProcessing/MaximaDetection.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing 2026-02-06T16:44:51,592 copying ClearMap/GF_extras/clearmap1_GF/ImageProcessing/SpotDetection.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing 2026-02-06T16:44:51,592 copying ClearMap/GF_extras/clearmap1_GF/ImageProcessing/StackProcessing.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing 2026-02-06T16:44:51,593 copying ClearMap/GF_extras/clearmap1_GF/ImageProcessing/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing 2026-02-06T16:44:51,594 copying ClearMap/GF_extras/clearmap1_GF/ImageProcessing/parallel_processing_GF.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing 2026-02-06T16:44:51,594 copying ClearMap/GF_extras/clearmap1_GF/ImageProcessing/sequential_processing_GF.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing 2026-02-06T16:44:51,595 copying ClearMap/GF_extras/clearmap1_GF/ImageProcessing/sequential_processing_GF_v2.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing 2026-02-06T16:44:51,596 copying ClearMap/GF_extras/clearmap1_GF/ImageProcessing/spot_detection_processing_GF.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing 2026-02-06T16:44:51,596 creating build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing/Filter 2026-02-06T16:44:51,597 copying ClearMap/GF_extras/clearmap1_GF/ImageProcessing/Filter/Convolution.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing/Filter 2026-02-06T16:44:51,597 copying ClearMap/GF_extras/clearmap1_GF/ImageProcessing/Filter/DoGFilter.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing/Filter 2026-02-06T16:44:51,598 copying ClearMap/GF_extras/clearmap1_GF/ImageProcessing/Filter/FilterKernel.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing/Filter 2026-02-06T16:44:51,599 copying ClearMap/GF_extras/clearmap1_GF/ImageProcessing/Filter/LinearFilter.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing/Filter 2026-02-06T16:44:51,599 copying ClearMap/GF_extras/clearmap1_GF/ImageProcessing/Filter/StructureElement.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing/Filter 2026-02-06T16:44:51,600 copying ClearMap/GF_extras/clearmap1_GF/ImageProcessing/Filter/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/GF_extras/clearmap1_GF/ImageProcessing/Filter 2026-02-06T16:44:51,600 creating build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Matplotlib 2026-02-06T16:44:51,601 copying ClearMap/Visualization/Matplotlib/PlotUtils.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Matplotlib 2026-02-06T16:44:51,601 copying ClearMap/Visualization/Matplotlib/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Matplotlib 2026-02-06T16:44:51,602 creating build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Mesh 2026-02-06T16:44:51,602 copying ClearMap/Visualization/Mesh/IcoSphere.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Mesh 2026-02-06T16:44:51,603 copying ClearMap/Visualization/Mesh/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Mesh 2026-02-06T16:44:51,603 creating build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Qt 2026-02-06T16:44:51,604 copying ClearMap/Visualization/Qt/DataViewer.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Qt 2026-02-06T16:44:51,604 copying ClearMap/Visualization/Qt/Plot3d.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Qt 2026-02-06T16:44:51,605 copying ClearMap/Visualization/Qt/Utils.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Qt 2026-02-06T16:44:51,606 copying ClearMap/Visualization/Qt/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Qt 2026-02-06T16:44:51,606 creating build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Qt/_Todo 2026-02-06T16:44:51,607 copying ClearMap/Visualization/Qt/_Todo/ImageItem.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Qt/_Todo 2026-02-06T16:44:51,607 creating build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Qt/_Todo/GUI 2026-02-06T16:44:51,608 copying ClearMap/Visualization/Qt/_Todo/GUI/DataViewerSimple.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Qt/_Todo/GUI 2026-02-06T16:44:51,609 copying ClearMap/Visualization/Qt/_Todo/GUI/FileDialog.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Qt/_Todo/GUI 2026-02-06T16:44:51,609 copying ClearMap/Visualization/Qt/_Todo/GUI/GUI.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Qt/_Todo/GUI 2026-02-06T16:44:51,610 copying ClearMap/Visualization/Qt/_Todo/GUI/ImageProcessing.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Qt/_Todo/GUI 2026-02-06T16:44:51,611 copying ClearMap/Visualization/Qt/_Todo/GUI/Parameter.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Qt/_Todo/GUI 2026-02-06T16:44:51,611 copying ClearMap/Visualization/Qt/_Todo/GUI/ParameterItems.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Qt/_Todo/GUI 2026-02-06T16:44:51,612 copying ClearMap/Visualization/Qt/_Todo/GUI/PipelineViewer.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Qt/_Todo/GUI 2026-02-06T16:44:51,612 copying ClearMap/Visualization/Qt/_Todo/GUI/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Qt/_Todo/GUI 2026-02-06T16:44:51,613 creating build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Vispy 2026-02-06T16:44:51,614 copying ClearMap/Visualization/Vispy/GraphVisual.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Vispy 2026-02-06T16:44:51,614 copying ClearMap/Visualization/Vispy/Plot3d.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Vispy 2026-02-06T16:44:51,615 copying ClearMap/Visualization/Vispy/PlotGraph3d.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Vispy 2026-02-06T16:44:51,615 copying ClearMap/Visualization/Vispy/TurntableCamera.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Vispy 2026-02-06T16:44:51,615 copying ClearMap/Visualization/Vispy/VolumeVisual.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Vispy 2026-02-06T16:44:51,616 copying ClearMap/Visualization/Vispy/__init__.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/Vispy 2026-02-06T16:44:51,616 creating build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/_Todo 2026-02-06T16:44:51,617 copying ClearMap/Visualization/_Todo/Plot.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/_Todo 2026-02-06T16:44:51,617 copying ClearMap/Visualization/_Todo/plot_utils.py -> build/lib.linux-armv7l-cpython-311/ClearMap/Visualization/_Todo 2026-02-06T16:44:51,618 running build_ext 2026-02-06T16:44:51,618 building 'ClearMap.ImageProcessing.Binary.FillingCode' extension 2026-02-06T16:44:51,619 creating build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Binary 2026-02-06T16:44:51,619 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/tmp/pip-wheel-ddvfp2wa/clearmap-nmr_56a727a4b11c4396b20959892f6addae -I/usr/include/python3.11 -c ClearMap/ImageProcessing/Binary/FillingCode.cpp -o build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Binary/FillingCode.o -O3 -fopenmp -Wno-unused-variable -Wno-maybe-uninitialized -Wno-array-bounds 2026-02-06T16:45:12,535 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Binary/FillingCode.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Binary/FillingCode.cpython-311-arm-linux-gnueabihf.so -fopenmp 2026-02-06T16:45:12,861 building 'ClearMap.ImageProcessing.Clipping.ClippingCode' extension 2026-02-06T16:45:12,862 creating build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Clipping 2026-02-06T16:45:12,863 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/tmp/pip-wheel-ddvfp2wa/clearmap-nmr_56a727a4b11c4396b20959892f6addae -I/usr/include/python3.11 -c ClearMap/ImageProcessing/Clipping/ClippingCode.cpp -o build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Clipping/ClippingCode.o -O3 -fopenmp -Wno-unused-variable -Wno-maybe-uninitialized -Wno-array-bounds 2026-02-06T16:46:07,347 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Clipping/ClippingCode.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Clipping/ClippingCode.cpython-311-arm-linux-gnueabihf.so -fopenmp 2026-02-06T16:46:07,733 building 'ClearMap.ImageProcessing.Differentiation.HessianCode' extension 2026-02-06T16:46:07,734 creating build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Differentiation 2026-02-06T16:46:07,735 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/tmp/pip-wheel-ddvfp2wa/clearmap-nmr_56a727a4b11c4396b20959892f6addae -I/usr/include/python3.11 -c ClearMap/ImageProcessing/Differentiation/HessianCode.cpp -o build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Differentiation/HessianCode.o -O3 -fopenmp -Wno-unused-variable -Wno-maybe-uninitialized -Wno-array-bounds 2026-02-06T16:47:17,623 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Differentiation/HessianCode.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Differentiation/HessianCode.cpython-311-arm-linux-gnueabihf.so -fopenmp 2026-02-06T16:47:18,040 building 'ClearMap.ImageProcessing.Filter.Rank.RankCode' extension 2026-02-06T16:47:18,041 creating build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank 2026-02-06T16:47:18,042 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/tmp/pip-wheel-ddvfp2wa/clearmap-nmr_56a727a4b11c4396b20959892f6addae -I/usr/include/python3.11 -c ClearMap/ImageProcessing/Filter/Rank/RankCode.cpp -o build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank/RankCode.o -O3 -fopenmp -Wno-unused-variable -Wno-maybe-uninitialized -Wno-array-bounds 2026-02-06T16:52:46,843 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank/RankCode.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank/RankCode.cpython-311-arm-linux-gnueabihf.so -fopenmp 2026-02-06T16:52:47,690 building 'ClearMap.ImageProcessing.Filter.Rank.PercentileCode' extension 2026-02-06T16:52:47,691 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/tmp/pip-wheel-ddvfp2wa/clearmap-nmr_56a727a4b11c4396b20959892f6addae -I/usr/include/python3.11 -c ClearMap/ImageProcessing/Filter/Rank/PercentileCode.cpp -o build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank/PercentileCode.o -O3 -fopenmp -Wno-unused-variable -Wno-maybe-uninitialized -Wno-array-bounds 2026-02-06T16:55:24,853 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank/PercentileCode.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank/PercentileCode.cpython-311-arm-linux-gnueabihf.so -fopenmp 2026-02-06T16:55:25,468 building 'ClearMap.ImageProcessing.Filter.Rank.BilateralCode' extension 2026-02-06T16:55:25,469 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/tmp/pip-wheel-ddvfp2wa/clearmap-nmr_56a727a4b11c4396b20959892f6addae -I/usr/include/python3.11 -c ClearMap/ImageProcessing/Filter/Rank/BilateralCode.cpp -o build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank/BilateralCode.o -O3 -fopenmp -Wno-unused-variable -Wno-maybe-uninitialized -Wno-array-bounds 2026-02-06T16:56:52,734 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank/BilateralCode.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank/BilateralCode.cpython-311-arm-linux-gnueabihf.so -fopenmp 2026-02-06T16:56:53,076 building 'ClearMap.ImageProcessing.Filter.Rank.ParametricCode' extension 2026-02-06T16:56:53,077 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/tmp/pip-wheel-ddvfp2wa/clearmap-nmr_56a727a4b11c4396b20959892f6addae -I/usr/include/python3.11 -c ClearMap/ImageProcessing/Filter/Rank/ParametricCode.cpp -o build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank/ParametricCode.o -O3 -fopenmp -Wno-unused-variable -Wno-maybe-uninitialized -Wno-array-bounds 2026-02-06T16:56:56,911 ClearMap/ImageProcessing/Filter/Rank/ParametricCode.cpp: In function ‘void __pyx_fuse_0_0_0__pyx_f_8ClearMap_15ImageProcessing_6Filter_4Rank_14ParametricCode_kernel_lsac(__pyx_t_5numpy_uint8_t*, Py_ssize_t*, Py_ssize_t, __pyx_t_5numpy_uint8_t, Py_ssize_t, Py_ssize_t*, double*)’: 2026-02-06T16:56:56,911 ClearMap/ImageProcessing/Filter/Rank/ParametricCode.cpp:27821:44: warning: format ‘%f’ expects argument of type ‘double’, but argument 3 has type ‘int’ [-Wformat=] 2026-02-06T16:56:56,912 27821 | (void)(printf(((char *)"value,sink=%f,%f\n"), __pyx_v_total, (__pyx_v_sink[0]))); 2026-02-06T16:56:56,913 | ~^ ~~~~~~~~~~~~~~~~~ 2026-02-06T16:56:56,913 | | | 2026-02-06T16:56:56,914 | double int 2026-02-06T16:56:56,915 | %d 2026-02-06T16:56:56,921 ClearMap/ImageProcessing/Filter/Rank/ParametricCode.cpp: In function ‘void __pyx_fuse_0_0_1__pyx_f_8ClearMap_15ImageProcessing_6Filter_4Rank_14ParametricCode_kernel_lsac(__pyx_t_5numpy_uint8_t*, Py_ssize_t*, Py_ssize_t, __pyx_t_5numpy_uint16_t, Py_ssize_t, Py_ssize_t*, double*)’: 2026-02-06T16:56:56,921 ClearMap/ImageProcessing/Filter/Rank/ParametricCode.cpp:28530:44: warning: format ‘%f’ expects argument of type ‘double’, but argument 3 has type ‘int’ [-Wformat=] 2026-02-06T16:56:56,922 28530 | (void)(printf(((char *)"value,sink=%f,%f\n"), __pyx_v_total, (__pyx_v_sink[0]))); 2026-02-06T16:56:56,923 | ~^ ~~~~~~~~~~~~~~~~~ 2026-02-06T16:56:56,923 | | | 2026-02-06T16:56:56,924 | double int 2026-02-06T16:56:56,924 | %d 2026-02-06T16:56:56,931 ClearMap/ImageProcessing/Filter/Rank/ParametricCode.cpp: In function ‘void __pyx_fuse_0_0_2__pyx_f_8ClearMap_15ImageProcessing_6Filter_4Rank_14ParametricCode_kernel_lsac(__pyx_t_5numpy_uint8_t*, Py_ssize_t*, Py_ssize_t, __pyx_t_5numpy_int64_t, Py_ssize_t, Py_ssize_t*, double*)’: 2026-02-06T16:56:56,932 ClearMap/ImageProcessing/Filter/Rank/ParametricCode.cpp:29239:44: warning: format ‘%f’ expects argument of type ‘double’, but argument 3 has type ‘int’ [-Wformat=] 2026-02-06T16:56:56,932 29239 | (void)(printf(((char *)"value,sink=%f,%f\n"), __pyx_v_total, (__pyx_v_sink[0]))); 2026-02-06T16:56:56,933 | ~^ ~~~~~~~~~~~~~~~~~ 2026-02-06T16:56:56,934 | | | 2026-02-06T16:56:56,934 | double int 2026-02-06T16:56:56,934 | %d 2026-02-06T16:56:56,941 ClearMap/ImageProcessing/Filter/Rank/ParametricCode.cpp: In function ‘void __pyx_fuse_1_0_0__pyx_f_8ClearMap_15ImageProcessing_6Filter_4Rank_14ParametricCode_kernel_lsac(__pyx_t_5numpy_uint16_t*, Py_ssize_t*, Py_ssize_t, __pyx_t_5numpy_uint8_t, Py_ssize_t, Py_ssize_t*, double*)’: 2026-02-06T16:56:56,942 ClearMap/ImageProcessing/Filter/Rank/ParametricCode.cpp:29948:44: warning: format ‘%f’ expects argument of type ‘double’, but argument 3 has type ‘int’ [-Wformat=] 2026-02-06T16:56:56,942 29948 | (void)(printf(((char *)"value,sink=%f,%f\n"), __pyx_v_total, (__pyx_v_sink[0]))); 2026-02-06T16:56:56,943 | ~^ ~~~~~~~~~~~~~~~~~ 2026-02-06T16:56:56,943 | | | 2026-02-06T16:56:56,944 | double int 2026-02-06T16:56:56,944 | %d 2026-02-06T16:56:56,951 ClearMap/ImageProcessing/Filter/Rank/ParametricCode.cpp: In function ‘void __pyx_fuse_1_0_1__pyx_f_8ClearMap_15ImageProcessing_6Filter_4Rank_14ParametricCode_kernel_lsac(__pyx_t_5numpy_uint16_t*, Py_ssize_t*, Py_ssize_t, __pyx_t_5numpy_uint16_t, Py_ssize_t, Py_ssize_t*, double*)’: 2026-02-06T16:56:56,952 ClearMap/ImageProcessing/Filter/Rank/ParametricCode.cpp:30657:44: warning: format ‘%f’ expects argument of type ‘double’, but argument 3 has type ‘int’ [-Wformat=] 2026-02-06T16:56:56,952 30657 | (void)(printf(((char *)"value,sink=%f,%f\n"), __pyx_v_total, (__pyx_v_sink[0]))); 2026-02-06T16:56:56,953 | ~^ ~~~~~~~~~~~~~~~~~ 2026-02-06T16:56:56,954 | | | 2026-02-06T16:56:56,954 | double int 2026-02-06T16:56:56,955 | %d 2026-02-06T16:56:56,962 ClearMap/ImageProcessing/Filter/Rank/ParametricCode.cpp: In function ‘void __pyx_fuse_1_0_2__pyx_f_8ClearMap_15ImageProcessing_6Filter_4Rank_14ParametricCode_kernel_lsac(__pyx_t_5numpy_uint16_t*, Py_ssize_t*, Py_ssize_t, __pyx_t_5numpy_int64_t, Py_ssize_t, Py_ssize_t*, double*)’: 2026-02-06T16:56:56,963 ClearMap/ImageProcessing/Filter/Rank/ParametricCode.cpp:31366:44: warning: format ‘%f’ expects argument of type ‘double’, but argument 3 has type ‘int’ [-Wformat=] 2026-02-06T16:56:56,964 31366 | (void)(printf(((char *)"value,sink=%f,%f\n"), __pyx_v_total, (__pyx_v_sink[0]))); 2026-02-06T16:56:56,964 | ~^ ~~~~~~~~~~~~~~~~~ 2026-02-06T16:56:56,965 | | | 2026-02-06T16:56:56,966 | double int 2026-02-06T16:56:56,966 | %d 2026-02-06T16:56:56,973 ClearMap/ImageProcessing/Filter/Rank/ParametricCode.cpp: In function ‘void __pyx_fuse_2_0_0__pyx_f_8ClearMap_15ImageProcessing_6Filter_4Rank_14ParametricCode_kernel_lsac(__pyx_t_5numpy_int64_t*, Py_ssize_t*, Py_ssize_t, __pyx_t_5numpy_uint8_t, Py_ssize_t, Py_ssize_t*, double*)’: 2026-02-06T16:56:56,974 ClearMap/ImageProcessing/Filter/Rank/ParametricCode.cpp:32075:44: warning: format ‘%f’ expects argument of type ‘double’, but argument 3 has type ‘__pyx_t_5numpy_int64_t’ {aka ‘long long int’} [-Wformat=] 2026-02-06T16:56:56,975 32075 | (void)(printf(((char *)"value,sink=%f,%f\n"), __pyx_v_total, (__pyx_v_sink[0]))); 2026-02-06T16:56:56,975 | ~^ ~~~~~~~~~~~~~~~~~ 2026-02-06T16:56:56,976 | | | 2026-02-06T16:56:56,976 | double __pyx_t_5numpy_int64_t {aka long long int} 2026-02-06T16:56:56,977 | %lld 2026-02-06T16:56:56,984 ClearMap/ImageProcessing/Filter/Rank/ParametricCode.cpp: In function ‘void __pyx_fuse_2_0_1__pyx_f_8ClearMap_15ImageProcessing_6Filter_4Rank_14ParametricCode_kernel_lsac(__pyx_t_5numpy_int64_t*, Py_ssize_t*, Py_ssize_t, __pyx_t_5numpy_uint16_t, Py_ssize_t, Py_ssize_t*, double*)’: 2026-02-06T16:56:56,985 ClearMap/ImageProcessing/Filter/Rank/ParametricCode.cpp:32784:44: warning: format ‘%f’ expects argument of type ‘double’, but argument 3 has type ‘__pyx_t_5numpy_int64_t’ {aka ‘long long int’} [-Wformat=] 2026-02-06T16:56:56,985 32784 | (void)(printf(((char *)"value,sink=%f,%f\n"), __pyx_v_total, (__pyx_v_sink[0]))); 2026-02-06T16:56:56,986 | ~^ ~~~~~~~~~~~~~~~~~ 2026-02-06T16:56:56,986 | | | 2026-02-06T16:56:56,987 | double __pyx_t_5numpy_int64_t {aka long long int} 2026-02-06T16:56:56,988 | %lld 2026-02-06T16:56:56,995 ClearMap/ImageProcessing/Filter/Rank/ParametricCode.cpp: In function ‘void __pyx_fuse_2_0_2__pyx_f_8ClearMap_15ImageProcessing_6Filter_4Rank_14ParametricCode_kernel_lsac(__pyx_t_5numpy_int64_t*, Py_ssize_t*, Py_ssize_t, __pyx_t_5numpy_int64_t, Py_ssize_t, Py_ssize_t*, double*)’: 2026-02-06T16:56:56,996 ClearMap/ImageProcessing/Filter/Rank/ParametricCode.cpp:33493:44: warning: format ‘%f’ expects argument of type ‘double’, but argument 3 has type ‘__pyx_t_5numpy_int64_t’ {aka ‘long long int’} [-Wformat=] 2026-02-06T16:56:56,996 33493 | (void)(printf(((char *)"value,sink=%f,%f\n"), __pyx_v_total, (__pyx_v_sink[0]))); 2026-02-06T16:56:56,997 | ~^ ~~~~~~~~~~~~~~~~~ 2026-02-06T16:56:56,997 | | | 2026-02-06T16:56:56,998 | double __pyx_t_5numpy_int64_t {aka long long int} 2026-02-06T16:56:56,999 | %lld 2026-02-06T16:58:09,224 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank/ParametricCode.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Filter/Rank/ParametricCode.cpython-311-arm-linux-gnueabihf.so -fopenmp 2026-02-06T16:58:09,518 building 'ClearMap.ImageProcessing.Thresholding.ThresholdingCode' extension 2026-02-06T16:58:09,519 creating build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Thresholding 2026-02-06T16:58:09,520 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/tmp/pip-wheel-ddvfp2wa/clearmap-nmr_56a727a4b11c4396b20959892f6addae -I/usr/include/python3.11 -c ClearMap/ImageProcessing/Thresholding/ThresholdingCode.cpp -o build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Thresholding/ThresholdingCode.o -O3 -fopenmp -Wno-unused-variable -Wno-maybe-uninitialized -Wno-array-bounds 2026-02-06T16:59:47,761 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Thresholding/ThresholdingCode.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Thresholding/ThresholdingCode.cpython-311-arm-linux-gnueabihf.so -fopenmp 2026-02-06T16:59:48,236 building 'ClearMap.ImageProcessing.Tracing.TraceCode' extension 2026-02-06T16:59:48,237 creating build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Tracing 2026-02-06T16:59:48,237 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -IClearMap/ImageProcessing/Tracing -I/tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/tmp/pip-wheel-ddvfp2wa/clearmap-nmr_56a727a4b11c4396b20959892f6addae -I/usr/include/python3.11 -c ClearMap/ImageProcessing/Tracing/TraceCode.cpp -o build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Tracing/TraceCode.o -O3 -fopenmp -Wno-unused-variable -Wno-maybe-uninitialized -Wno-array-bounds 2026-02-06T16:59:50,680 In file included from ClearMap/ImageProcessing/Tracing/TraceCode.cpp:817: 2026-02-06T16:59:50,681 ClearMap/ImageProcessing/Tracing/TraceCode.hpp: In member function ‘std::vector<_Tp> Point3D::toVector() const’: 2026-02-06T16:59:50,682 ClearMap/ImageProcessing/Tracing/TraceCode.hpp:78:18: warning: empty parentheses were disambiguated as a function declaration [-Wvexing-parse] 2026-02-06T16:59:50,682 78 | vector v(); 2026-02-06T16:59:50,683 | ^~ 2026-02-06T17:00:28,029 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Tracing/TraceCode.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/ClearMap/ImageProcessing/Tracing/TraceCode.cpython-311-arm-linux-gnueabihf.so -fopenmp 2026-02-06T17:00:28,376 building 'ClearMap.ParallelProcessing.DataProcessing.ArrayProcessingCode' extension 2026-02-06T17:00:28,377 creating build/temp.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing 2026-02-06T17:00:28,379 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/tmp/pip-wheel-ddvfp2wa/clearmap-nmr_56a727a4b11c4396b20959892f6addae -I/usr/include/python3.11 -c ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp -o build/temp.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.o -O3 -fopenmp -Wno-unused-variable -Wno-maybe-uninitialized -Wno-array-bounds 2026-02-06T17:00:56,488 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp: In function ‘_ZL95__pyx_fuse_6__pyx_f_8ClearMap_18ParallelProcessing_14DataProcessing_19ArrayProcessingCode_write18__Pyx_memviewslicePciiii._omp_fn.0’: 2026-02-06T17:00:56,489 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:138474:33: warning: pointer may be used after ‘int fclose(FILE*)’ [-Wuse-after-free] 2026-02-06T17:00:56,490 138474 | #pragma omp for lastprivate(__pyx_v_fid) firstprivate(__pyx_v_p) lastprivate(__pyx_v_p) schedule(guided) 2026-02-06T17:00:56,490 | ^~~ 2026-02-06T17:00:56,491 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:138519:46: note: call to ‘int fclose(FILE*)’ here 2026-02-06T17:00:56,492 138519 | (void)(fclose(__pyx_v_fid)); 2026-02-06T17:00:56,492 | ~~~~~~~^~~~~~~~~~~~~~ 2026-02-06T17:00:56,567 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp: In function ‘_ZL95__pyx_fuse_5__pyx_f_8ClearMap_18ParallelProcessing_14DataProcessing_19ArrayProcessingCode_write18__Pyx_memviewslicePciiii._omp_fn.0’: 2026-02-06T17:00:56,568 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:137966:33: warning: pointer may be used after ‘int fclose(FILE*)’ [-Wuse-after-free] 2026-02-06T17:00:56,569 137966 | #pragma omp for lastprivate(__pyx_v_fid) firstprivate(__pyx_v_p) lastprivate(__pyx_v_p) schedule(guided) 2026-02-06T17:00:56,569 | ^~~ 2026-02-06T17:00:56,570 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:138011:46: note: call to ‘int fclose(FILE*)’ here 2026-02-06T17:00:56,571 138011 | (void)(fclose(__pyx_v_fid)); 2026-02-06T17:00:56,571 | ~~~~~~~^~~~~~~~~~~~~~ 2026-02-06T17:00:56,614 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp: In function ‘_ZL95__pyx_fuse_4__pyx_f_8ClearMap_18ParallelProcessing_14DataProcessing_19ArrayProcessingCode_write18__Pyx_memviewslicePciiii._omp_fn.0’: 2026-02-06T17:00:56,615 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:137458:33: warning: pointer may be used after ‘int fclose(FILE*)’ [-Wuse-after-free] 2026-02-06T17:00:56,616 137458 | #pragma omp for lastprivate(__pyx_v_fid) firstprivate(__pyx_v_p) lastprivate(__pyx_v_p) schedule(guided) 2026-02-06T17:00:56,616 | ^~~ 2026-02-06T17:00:56,617 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:137503:46: note: call to ‘int fclose(FILE*)’ here 2026-02-06T17:00:56,617 137503 | (void)(fclose(__pyx_v_fid)); 2026-02-06T17:00:56,618 | ~~~~~~~^~~~~~~~~~~~~~ 2026-02-06T17:00:56,666 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp: In function ‘_ZL95__pyx_fuse_3__pyx_f_8ClearMap_18ParallelProcessing_14DataProcessing_19ArrayProcessingCode_write18__Pyx_memviewslicePciiii._omp_fn.0’: 2026-02-06T17:00:56,666 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:136950:33: warning: pointer may be used after ‘int fclose(FILE*)’ [-Wuse-after-free] 2026-02-06T17:00:56,667 136950 | #pragma omp for lastprivate(__pyx_v_fid) firstprivate(__pyx_v_p) lastprivate(__pyx_v_p) schedule(guided) 2026-02-06T17:00:56,668 | ^~~ 2026-02-06T17:00:56,668 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:136995:46: note: call to ‘int fclose(FILE*)’ here 2026-02-06T17:00:56,669 136995 | (void)(fclose(__pyx_v_fid)); 2026-02-06T17:00:56,670 | ~~~~~~~^~~~~~~~~~~~~~ 2026-02-06T17:00:56,712 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp: In function ‘_ZL95__pyx_fuse_2__pyx_f_8ClearMap_18ParallelProcessing_14DataProcessing_19ArrayProcessingCode_write18__Pyx_memviewslicePciiii._omp_fn.0’: 2026-02-06T17:00:56,713 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:136442:33: warning: pointer may be used after ‘int fclose(FILE*)’ [-Wuse-after-free] 2026-02-06T17:00:56,713 136442 | #pragma omp for lastprivate(__pyx_v_fid) firstprivate(__pyx_v_p) lastprivate(__pyx_v_p) schedule(guided) 2026-02-06T17:00:56,714 | ^~~ 2026-02-06T17:00:56,715 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:136487:46: note: call to ‘int fclose(FILE*)’ here 2026-02-06T17:00:56,716 136487 | (void)(fclose(__pyx_v_fid)); 2026-02-06T17:00:56,716 | ~~~~~~~^~~~~~~~~~~~~~ 2026-02-06T17:00:56,758 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp: In function ‘_ZL95__pyx_fuse_1__pyx_f_8ClearMap_18ParallelProcessing_14DataProcessing_19ArrayProcessingCode_write18__Pyx_memviewslicePciiii._omp_fn.0’: 2026-02-06T17:00:56,759 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:135934:33: warning: pointer may be used after ‘int fclose(FILE*)’ [-Wuse-after-free] 2026-02-06T17:00:56,760 135934 | #pragma omp for lastprivate(__pyx_v_fid) firstprivate(__pyx_v_p) lastprivate(__pyx_v_p) schedule(guided) 2026-02-06T17:00:56,760 | ^~~ 2026-02-06T17:00:56,761 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:135979:46: note: call to ‘int fclose(FILE*)’ here 2026-02-06T17:00:56,761 135979 | (void)(fclose(__pyx_v_fid)); 2026-02-06T17:00:56,762 | ~~~~~~~^~~~~~~~~~~~~~ 2026-02-06T17:00:56,810 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp: In function ‘_ZL95__pyx_fuse_0__pyx_f_8ClearMap_18ParallelProcessing_14DataProcessing_19ArrayProcessingCode_write18__Pyx_memviewslicePciiii._omp_fn.0’: 2026-02-06T17:00:56,811 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:135426:33: warning: pointer may be used after ‘int fclose(FILE*)’ [-Wuse-after-free] 2026-02-06T17:00:56,811 135426 | #pragma omp for lastprivate(__pyx_v_fid) firstprivate(__pyx_v_p) lastprivate(__pyx_v_p) schedule(guided) 2026-02-06T17:00:56,812 | ^~~ 2026-02-06T17:00:56,813 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:135471:46: note: call to ‘int fclose(FILE*)’ here 2026-02-06T17:00:56,813 135471 | (void)(fclose(__pyx_v_fid)); 2026-02-06T17:00:56,814 | ~~~~~~~^~~~~~~~~~~~~~ 2026-02-06T17:00:56,857 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp: In function ‘_ZL94__pyx_fuse_6__pyx_f_8ClearMap_18ParallelProcessing_14DataProcessing_19ArrayProcessingCode_read18__Pyx_memviewslicePciiii._omp_fn.0’: 2026-02-06T17:00:56,858 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:134144:33: warning: pointer may be used after ‘int fclose(FILE*)’ [-Wuse-after-free] 2026-02-06T17:00:56,858 134144 | #pragma omp for lastprivate(__pyx_v_fid) firstprivate(__pyx_v_p) lastprivate(__pyx_v_p) schedule(guided) 2026-02-06T17:00:56,859 | ^~~ 2026-02-06T17:00:56,860 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:134189:46: note: call to ‘int fclose(FILE*)’ here 2026-02-06T17:00:56,861 134189 | (void)(fclose(__pyx_v_fid)); 2026-02-06T17:00:56,861 | ~~~~~~~^~~~~~~~~~~~~~ 2026-02-06T17:00:56,904 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp: In function ‘_ZL94__pyx_fuse_5__pyx_f_8ClearMap_18ParallelProcessing_14DataProcessing_19ArrayProcessingCode_read18__Pyx_memviewslicePciiii._omp_fn.0’: 2026-02-06T17:00:56,905 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:133636:33: warning: pointer may be used after ‘int fclose(FILE*)’ [-Wuse-after-free] 2026-02-06T17:00:56,906 133636 | #pragma omp for lastprivate(__pyx_v_fid) firstprivate(__pyx_v_p) lastprivate(__pyx_v_p) schedule(guided) 2026-02-06T17:00:56,907 | ^~~ 2026-02-06T17:00:56,907 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:133681:46: note: call to ‘int fclose(FILE*)’ here 2026-02-06T17:00:56,908 133681 | (void)(fclose(__pyx_v_fid)); 2026-02-06T17:00:56,909 | ~~~~~~~^~~~~~~~~~~~~~ 2026-02-06T17:00:56,951 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp: In function ‘_ZL94__pyx_fuse_4__pyx_f_8ClearMap_18ParallelProcessing_14DataProcessing_19ArrayProcessingCode_read18__Pyx_memviewslicePciiii._omp_fn.0’: 2026-02-06T17:00:56,951 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:133128:33: warning: pointer may be used after ‘int fclose(FILE*)’ [-Wuse-after-free] 2026-02-06T17:00:56,952 133128 | #pragma omp for lastprivate(__pyx_v_fid) firstprivate(__pyx_v_p) lastprivate(__pyx_v_p) schedule(guided) 2026-02-06T17:00:56,952 | ^~~ 2026-02-06T17:00:56,953 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:133173:46: note: call to ‘int fclose(FILE*)’ here 2026-02-06T17:00:56,954 133173 | (void)(fclose(__pyx_v_fid)); 2026-02-06T17:00:56,954 | ~~~~~~~^~~~~~~~~~~~~~ 2026-02-06T17:00:56,997 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp: In function ‘_ZL94__pyx_fuse_3__pyx_f_8ClearMap_18ParallelProcessing_14DataProcessing_19ArrayProcessingCode_read18__Pyx_memviewslicePciiii._omp_fn.0’: 2026-02-06T17:00:56,998 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:132620:33: warning: pointer may be used after ‘int fclose(FILE*)’ [-Wuse-after-free] 2026-02-06T17:00:56,999 132620 | #pragma omp for lastprivate(__pyx_v_fid) firstprivate(__pyx_v_p) lastprivate(__pyx_v_p) schedule(guided) 2026-02-06T17:00:56,999 | ^~~ 2026-02-06T17:00:57,000 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:132665:46: note: call to ‘int fclose(FILE*)’ here 2026-02-06T17:00:57,001 132665 | (void)(fclose(__pyx_v_fid)); 2026-02-06T17:00:57,001 | ~~~~~~~^~~~~~~~~~~~~~ 2026-02-06T17:00:57,045 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp: In function ‘_ZL94__pyx_fuse_2__pyx_f_8ClearMap_18ParallelProcessing_14DataProcessing_19ArrayProcessingCode_read18__Pyx_memviewslicePciiii._omp_fn.0’: 2026-02-06T17:00:57,045 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:132112:33: warning: pointer may be used after ‘int fclose(FILE*)’ [-Wuse-after-free] 2026-02-06T17:00:57,046 132112 | #pragma omp for lastprivate(__pyx_v_fid) firstprivate(__pyx_v_p) lastprivate(__pyx_v_p) schedule(guided) 2026-02-06T17:00:57,047 | ^~~ 2026-02-06T17:00:57,047 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:132157:46: note: call to ‘int fclose(FILE*)’ here 2026-02-06T17:00:57,050 132157 | (void)(fclose(__pyx_v_fid)); 2026-02-06T17:00:57,051 | ~~~~~~~^~~~~~~~~~~~~~ 2026-02-06T17:00:57,091 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp: In function ‘_ZL94__pyx_fuse_1__pyx_f_8ClearMap_18ParallelProcessing_14DataProcessing_19ArrayProcessingCode_read18__Pyx_memviewslicePciiii._omp_fn.0’: 2026-02-06T17:00:57,092 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:131604:33: warning: pointer may be used after ‘int fclose(FILE*)’ [-Wuse-after-free] 2026-02-06T17:00:57,093 131604 | #pragma omp for lastprivate(__pyx_v_fid) firstprivate(__pyx_v_p) lastprivate(__pyx_v_p) schedule(guided) 2026-02-06T17:00:57,093 | ^~~ 2026-02-06T17:00:57,094 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:131649:46: note: call to ‘int fclose(FILE*)’ here 2026-02-06T17:00:57,095 131649 | (void)(fclose(__pyx_v_fid)); 2026-02-06T17:00:57,096 | ~~~~~~~^~~~~~~~~~~~~~ 2026-02-06T17:00:57,138 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp: In function ‘_ZL94__pyx_fuse_0__pyx_f_8ClearMap_18ParallelProcessing_14DataProcessing_19ArrayProcessingCode_read18__Pyx_memviewslicePciiii._omp_fn.0’: 2026-02-06T17:00:57,139 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:131096:33: warning: pointer may be used after ‘int fclose(FILE*)’ [-Wuse-after-free] 2026-02-06T17:00:57,139 131096 | #pragma omp for lastprivate(__pyx_v_fid) firstprivate(__pyx_v_p) lastprivate(__pyx_v_p) schedule(guided) 2026-02-06T17:00:57,140 | ^~~ 2026-02-06T17:00:57,140 ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpp:131141:46: note: call to ‘int fclose(FILE*)’ here 2026-02-06T17:00:57,141 131141 | (void)(fclose(__pyx_v_fid)); 2026-02-06T17:00:57,142 | ~~~~~~~^~~~~~~~~~~~~~ 2026-02-06T17:04:33,880 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.cpython-311-arm-linux-gnueabihf.so -fopenmp 2026-02-06T17:04:35,155 building 'ClearMap.ParallelProcessing.DataProcessing.ConvolvePointListCode' extension 2026-02-06T17:04:35,157 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-k8tutqv9/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/tmp/pip-wheel-ddvfp2wa/clearmap-nmr_56a727a4b11c4396b20959892f6addae -I/usr/include/python3.11 -c ClearMap/ParallelProcessing/DataProcessing/ConvolvePointListCode.cpp -o build/temp.linux-armv7l-cpython-311/ClearMap/ParallelProcessing/DataProcessing/ConvolvePointListCode.o -O3 -fopenmp -Wno-unused-variable -Wno-maybe-uninitialized -Wno-array-bounds 2026-02-06T17:05:14,802 ClearMap/ParallelProcessing/DataProcessing/ConvolvePointListCode.cpp: In function ‘PyObject* __pyx_pw_8ClearMap_18ParallelProcessing_14DataProcessing_21ConvolvePointListCode_2805__pyx_fuse_0_2_4convolve_3d_indices(PyObject*, PyObject*, PyObject*)’: 2026-02-06T17:05:14,802 ClearMap/ParallelProcessing/DataProcessing/ConvolvePointListCode.cpp:668422: note: ‘-Wmisleading-indentation’ is disabled from this point onwards, since column-tracking was disabled due to the size of the code/headers 2026-02-06T17:05:14,803 668422 | else goto __pyx_L5_argtuple_error; 2026-02-06T17:05:14,804 | 2026-02-06T17:05:14,804 ClearMap/ParallelProcessing/DataProcessing/ConvolvePointListCode.cpp:668422: note: adding ‘-flarge-source-files’ will allow for more column-tracking support, at the expense of compilation time and memory 2026-02-06T17:05:41,691 virtual memory exhausted: Cannot allocate memory 2026-02-06T17:05:41,808 error: command '/usr/bin/arm-linux-gnueabihf-g++' failed with exit code 1 2026-02-06T17:05:41,985 ERROR: [present-rich] Building wheel for clearmap-nmr (pyproject.toml) exited with 1 2026-02-06T17:05:41,998 [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/lib/python3/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmpj1z5hzgy[/] 2026-02-06T17:05:41,999 [bold magenta]cwd[/]: /tmp/pip-wheel-ddvfp2wa/clearmap-nmr_56a727a4b11c4396b20959892f6addae 2026-02-06T17:05:41,999 Building wheel for clearmap-nmr (pyproject.toml): finished with status 'error' 2026-02-06T17:05:42,002 ERROR: Failed building wheel for clearmap-nmr 2026-02-06T17:05:42,005 Failed to build clearmap-nmr 2026-02-06T17:05:42,006 ERROR: Failed to build one or more wheels 2026-02-06T17:05:42,007 Exception information: 2026-02-06T17:05:42,007 Traceback (most recent call last): 2026-02-06T17:05:42,007 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper 2026-02-06T17:05:42,007 status = run_func(*args) 2026-02-06T17:05:42,007 ^^^^^^^^^^^^^^^ 2026-02-06T17:05:42,007 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 247, in wrapper 2026-02-06T17:05:42,007 return func(self, options, args) 2026-02-06T17:05:42,007 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2026-02-06T17:05:42,007 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 201, in run 2026-02-06T17:05:42,007 raise CommandError("Failed to build one or more wheels") 2026-02-06T17:05:42,007 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2026-02-06T17:05:42,012 Removed build tracker: '/tmp/pip-build-tracker-vap6mquf'