2026-02-08T23:52:15,714 Created temporary directory: /tmp/pip-ephem-wheel-cache-p86bew09 2026-02-08T23:52:15,716 Created temporary directory: /tmp/pip-build-tracker-4_nj8vs3 2026-02-08T23:52:15,716 Initialized build tracking at /tmp/pip-build-tracker-4_nj8vs3 2026-02-08T23:52:15,717 Created build tracker: /tmp/pip-build-tracker-4_nj8vs3 2026-02-08T23:52:15,717 Entered build tracker: /tmp/pip-build-tracker-4_nj8vs3 2026-02-08T23:52:15,718 Created temporary directory: /tmp/pip-wheel-_tozp2fc 2026-02-08T23:52:15,721 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-02-08T23:52:15,723 Created temporary directory: /tmp/pip-ephem-wheel-cache-f3ogz6q8 2026-02-08T23:52:15,748 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-02-08T23:52:15,751 2 location(s) to search for versions of gget: 2026-02-08T23:52:15,751 * https://pypi.org/simple/gget/ 2026-02-08T23:52:15,751 * https://www.piwheels.org/simple/gget/ 2026-02-08T23:52:15,752 Fetching project page and analyzing links: https://pypi.org/simple/gget/ 2026-02-08T23:52:15,753 Getting page https://pypi.org/simple/gget/ 2026-02-08T23:52:15,754 Found index url https://pypi.org/simple 2026-02-08T23:52:15,893 Fetched page https://pypi.org/simple/gget/ as application/vnd.pypi.simple.v1+json 2026-02-08T23:52:15,912 Found link https://files.pythonhosted.org/packages/8b/20/a382c7726054f8ca88f89189a305b60557ca97bdea3b6577ae53825eba8f/gget-0.0.4.tar.gz (from https://pypi.org/simple/gget/), version: 0.0.4 2026-02-08T23:52:15,913 Skipping link: No binaries permitted for gget: https://files.pythonhosted.org/packages/34/f6/25e412cd135165f296ce17e3a163afbf4dafaffff7124a958a4f572c0890/gget-0.0.5-py3-none-any.whl (from https://pypi.org/simple/gget/) 2026-02-08T23:52:15,914 Found link https://files.pythonhosted.org/packages/b3/c5/202f15f9566f39e31e5695d56d6f9f88310974738e6e3d11ae0425c6bd9f/gget-0.0.5.tar.gz (from https://pypi.org/simple/gget/), version: 0.0.5 2026-02-08T23:52:15,915 Skipping link: No binaries permitted for gget: https://files.pythonhosted.org/packages/81/91/7dd3b3c63a2111f255d2a34a99eb41fd133a7ffd582bfdff2162af67570b/gget-0.0.6-py3-none-any.whl (from https://pypi.org/simple/gget/) 2026-02-08T23:52:15,915 Found link https://files.pythonhosted.org/packages/9d/d9/c832f8df2eeed738138ec4f2c4b4db3b547ec754f2a2917dbb62709a49aa/gget-0.0.6.tar.gz (from https://pypi.org/simple/gget/), version: 0.0.6 2026-02-08T23:52:15,916 Skipping link: No binaries permitted for gget: 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analyzing links: https://www.piwheels.org/simple/gget/ 2026-02-08T23:52:15,996 Getting page https://www.piwheels.org/simple/gget/ 2026-02-08T23:52:15,997 Found index url https://www.piwheels.org/simple 2026-02-08T23:52:16,155 Fetched page https://www.piwheels.org/simple/gget/ as text/html 2026-02-08T23:52:16,158 Skipping link: No binaries permitted for gget: https://archive1.piwheels.org/simple/gget/gget-0.29.3-py3-none-any.whl#sha256=ae1d82b40dc5a97df415087202e03a676869d6f0b977e4c0b96ee366c5e49b58 (from https://www.piwheels.org/simple/gget/) (requires-python:>=3.7) 2026-02-08T23:52:16,159 Skipping link: No binaries permitted for gget: https://archive1.piwheels.org/simple/gget/gget-0.29.2-py3-none-any.whl#sha256=c025aa973fd650b16032f7a690f581a25b06d8128aece42ea7576a16e223c387 (from https://www.piwheels.org/simple/gget/) (requires-python:>=3.7) 2026-02-08T23:52:16,160 Skipping link: No binaries permitted for gget: 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not a file: https://www.piwheels.org/simple/gget/ 2026-02-08T23:52:16,162 Skipping link: not a file: https://pypi.org/simple/gget/ 2026-02-08T23:52:16,187 Given no hashes to check 1 links for project 'gget': discarding no candidates 2026-02-08T23:52:16,206 Collecting gget==0.30.0 2026-02-08T23:52:16,208 Created temporary directory: /tmp/pip-unpack-4vn_8kv1 2026-02-08T23:52:16,425 Downloading gget-0.30.0.tar.gz (78.9 MB) 2026-02-08T23:52:34,990 Added gget==0.30.0 from https://files.pythonhosted.org/packages/70/fe/e4fe8e2bb45597efd8eb2f59041281c9f3dedf88a4e1626c33bb281623bf/gget-0.30.0.tar.gz to build tracker '/tmp/pip-build-tracker-4_nj8vs3' 2026-02-08T23:52:34,994 Created temporary directory: /tmp/pip-build-env-qxxs5709 2026-02-08T23:52:34,998 Installing build dependencies: started 2026-02-08T23:52:34,999 Running command pip subprocess to install build dependencies 2026-02-08T23:52:36,141 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-02-08T23:52:36,745 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-02-08T23:52:36,768 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-02-08T23:52:38,514 Collecting setuptools>=42 2026-02-08T23:52:38,534 Using cached setuptools-82.0.0-py3-none-any.whl (1.0 MB) 2026-02-08T23:52:38,797 Collecting wheel 2026-02-08T23:52:38,803 Using cached wheel-0.46.3-py3-none-any.whl (30 kB) 2026-02-08T23:52:38,984 Collecting packaging>=24.0 2026-02-08T23:52:38,990 Using cached packaging-26.0-py3-none-any.whl (74 kB) 2026-02-08T23:52:41,983 Installing collected packages: setuptools, packaging, wheel 2026-02-08T23:52:45,456 Creating /tmp/pip-build-env-qxxs5709/overlay/local/bin 2026-02-08T23:52:45,458 changing mode of /tmp/pip-build-env-qxxs5709/overlay/local/bin/wheel to 755 2026-02-08T23:52:45,479 Successfully installed packaging-26.0 setuptools-82.0.0 wheel-0.46.3 2026-02-08T23:52:45,753 Installing build dependencies: finished with status 'done' 2026-02-08T23:52:45,760 Getting requirements to build wheel: started 2026-02-08T23:52:45,761 Running command Getting requirements to build wheel 2026-02-08T23:52:46,309 /tmp/pip-build-env-qxxs5709/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-02-08T23:52:46,310 !! 2026-02-08T23:52:46,311 ******************************************************************************** 2026-02-08T23:52:46,311 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-02-08T23:52:46,312 License :: OSI Approved :: BSD License 2026-02-08T23:52:46,313 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-08T23:52:46,313 ******************************************************************************** 2026-02-08T23:52:46,314 !! 2026-02-08T23:52:46,315 self._finalize_license_expression() 2026-02-08T23:52:46,364 running egg_info 2026-02-08T23:52:46,370 writing gget.egg-info/PKG-INFO 2026-02-08T23:52:46,374 writing dependency_links to gget.egg-info/dependency_links.txt 2026-02-08T23:52:46,375 writing entry points to gget.egg-info/entry_points.txt 2026-02-08T23:52:46,377 writing requirements to gget.egg-info/requires.txt 2026-02-08T23:52:46,378 writing top-level names to gget.egg-info/top_level.txt 2026-02-08T23:52:46,407 reading manifest file 'gget.egg-info/SOURCES.txt' 2026-02-08T23:52:46,415 reading manifest template 'MANIFEST.in' 2026-02-08T23:52:46,427 adding license file 'LICENSE' 2026-02-08T23:52:46,432 writing manifest file 'gget.egg-info/SOURCES.txt' 2026-02-08T23:52:46,520 Getting requirements to build wheel: finished with status 'done' 2026-02-08T23:52:46,523 Created temporary directory: /tmp/pip-modern-metadata-m50u15iv 2026-02-08T23:52:46,526 Preparing metadata (pyproject.toml): started 2026-02-08T23:52:46,527 Running command Preparing metadata (pyproject.toml) 2026-02-08T23:52:47,068 /tmp/pip-build-env-qxxs5709/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-02-08T23:52:47,069 !! 2026-02-08T23:52:47,070 ******************************************************************************** 2026-02-08T23:52:47,070 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-02-08T23:52:47,072 License :: OSI Approved :: BSD License 2026-02-08T23:52:47,073 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-08T23:52:47,073 ******************************************************************************** 2026-02-08T23:52:47,074 !! 2026-02-08T23:52:47,075 self._finalize_license_expression() 2026-02-08T23:52:47,095 running dist_info 2026-02-08T23:52:47,106 creating /tmp/pip-modern-metadata-m50u15iv/gget.egg-info 2026-02-08T23:52:47,107 writing /tmp/pip-modern-metadata-m50u15iv/gget.egg-info/PKG-INFO 2026-02-08T23:52:47,111 writing dependency_links to /tmp/pip-modern-metadata-m50u15iv/gget.egg-info/dependency_links.txt 2026-02-08T23:52:47,112 writing entry points to /tmp/pip-modern-metadata-m50u15iv/gget.egg-info/entry_points.txt 2026-02-08T23:52:47,114 writing requirements to /tmp/pip-modern-metadata-m50u15iv/gget.egg-info/requires.txt 2026-02-08T23:52:47,115 writing top-level names to /tmp/pip-modern-metadata-m50u15iv/gget.egg-info/top_level.txt 2026-02-08T23:52:47,116 writing manifest file '/tmp/pip-modern-metadata-m50u15iv/gget.egg-info/SOURCES.txt' 2026-02-08T23:52:47,141 reading manifest file '/tmp/pip-modern-metadata-m50u15iv/gget.egg-info/SOURCES.txt' 2026-02-08T23:52:47,143 reading manifest template 'MANIFEST.in' 2026-02-08T23:52:47,153 adding license file 'LICENSE' 2026-02-08T23:52:47,158 writing manifest file '/tmp/pip-modern-metadata-m50u15iv/gget.egg-info/SOURCES.txt' 2026-02-08T23:52:47,159 creating '/tmp/pip-modern-metadata-m50u15iv/gget-0.30.0.dist-info' 2026-02-08T23:52:47,284 Preparing metadata (pyproject.toml): finished with status 'done' 2026-02-08T23:52:47,289 Source in /tmp/pip-wheel-_tozp2fc/gget_72c7a9c7695146b6a937076da334d981 has version 0.30.0, which satisfies requirement gget==0.30.0 from https://files.pythonhosted.org/packages/70/fe/e4fe8e2bb45597efd8eb2f59041281c9f3dedf88a4e1626c33bb281623bf/gget-0.30.0.tar.gz 2026-02-08T23:52:47,290 Removed gget==0.30.0 from https://files.pythonhosted.org/packages/70/fe/e4fe8e2bb45597efd8eb2f59041281c9f3dedf88a4e1626c33bb281623bf/gget-0.30.0.tar.gz from build tracker '/tmp/pip-build-tracker-4_nj8vs3' 2026-02-08T23:52:47,297 Created temporary directory: /tmp/pip-unpack-05_iefl_ 2026-02-08T23:52:47,298 Building wheels for collected packages: gget 2026-02-08T23:52:47,302 Created temporary directory: /tmp/pip-wheel-xmu4dkte 2026-02-08T23:52:47,303 Destination directory: /tmp/pip-wheel-xmu4dkte 2026-02-08T23:52:47,305 Building wheel for gget (pyproject.toml): started 2026-02-08T23:52:47,306 Running command Building wheel for gget (pyproject.toml) 2026-02-08T23:52:47,829 /tmp/pip-build-env-qxxs5709/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-02-08T23:52:47,829 !! 2026-02-08T23:52:47,830 ******************************************************************************** 2026-02-08T23:52:47,831 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-02-08T23:52:47,832 License :: OSI Approved :: BSD License 2026-02-08T23:52:47,833 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-08T23:52:47,833 ******************************************************************************** 2026-02-08T23:52:47,834 !! 2026-02-08T23:52:47,835 self._finalize_license_expression() 2026-02-08T23:52:47,856 running bdist_wheel 2026-02-08T23:52:47,883 running build 2026-02-08T23:52:47,884 running build_py 2026-02-08T23:52:47,894 creating build/lib/gget 2026-02-08T23:52:47,896 copying gget/gget_seq.py -> build/lib/gget 2026-02-08T23:52:47,899 copying gget/gget_ref.py -> build/lib/gget 2026-02-08T23:52:47,902 copying gget/gget_cosmic.py -> build/lib/gget 2026-02-08T23:52:47,905 copying gget/__main__.py -> build/lib/gget 2026-02-08T23:52:47,907 copying gget/gget_setup.py -> build/lib/gget 2026-02-08T23:52:47,909 copying gget/gget_alphafold.py -> build/lib/gget 2026-02-08T23:52:47,912 copying gget/utils.py -> build/lib/gget 2026-02-08T23:52:47,915 copying gget/gget_mutate.py -> build/lib/gget 2026-02-08T23:52:47,920 copying gget/__init__.py -> build/lib/gget 2026-02-08T23:52:47,921 copying gget/gget_elm.py -> build/lib/gget 2026-02-08T23:52:47,924 copying gget/main.py -> build/lib/gget 2026-02-08T23:52:47,929 copying gget/gget_cellxgene.py -> build/lib/gget 2026-02-08T23:52:47,932 copying gget/gget_enrichr.py -> build/lib/gget 2026-02-08T23:52:47,935 copying gget/gget_8cube.py -> build/lib/gget 2026-02-08T23:52:47,937 copying gget/gget_gpt.py -> build/lib/gget 2026-02-08T23:52:47,939 copying gget/gget_blast.py -> build/lib/gget 2026-02-08T23:52:47,942 copying gget/gget_bgee.py -> build/lib/gget 2026-02-08T23:52:47,944 copying gget/compile.py -> build/lib/gget 2026-02-08T23:52:47,946 copying gget/gget_virus.py -> build/lib/gget 2026-02-08T23:52:47,953 copying gget/gget_blat.py -> build/lib/gget 2026-02-08T23:52:47,955 copying gget/gget_opentargets.py -> build/lib/gget 2026-02-08T23:52:47,958 copying gget/gget_archs4.py -> build/lib/gget 2026-02-08T23:52:47,961 copying gget/gget_muscle.py -> build/lib/gget 2026-02-08T23:52:47,963 copying gget/constants.py -> build/lib/gget 2026-02-08T23:52:47,965 copying gget/gget_cbio.py -> build/lib/gget 2026-02-08T23:52:47,969 copying gget/gget_pdb.py -> build/lib/gget 2026-02-08T23:52:47,971 copying gget/gget_info.py -> build/lib/gget 2026-02-08T23:52:47,974 copying gget/gget_diamond.py -> build/lib/gget 2026-02-08T23:52:47,976 copying gget/gget_search.py -> build/lib/gget 2026-02-08T23:52:47,978 running egg_info 2026-02-08T23:52:47,989 writing gget.egg-info/PKG-INFO 2026-02-08T23:52:47,992 writing dependency_links to gget.egg-info/dependency_links.txt 2026-02-08T23:52:47,993 writing entry points to gget.egg-info/entry_points.txt 2026-02-08T23:52:47,995 writing requirements to gget.egg-info/requires.txt 2026-02-08T23:52:47,996 writing top-level names to gget.egg-info/top_level.txt 2026-02-08T23:52:48,006 reading manifest file 'gget.egg-info/SOURCES.txt' 2026-02-08T23:52:48,012 reading manifest template 'MANIFEST.in' 2026-02-08T23:52:48,022 adding license file 'LICENSE' 2026-02-08T23:52:48,028 writing manifest file 'gget.egg-info/SOURCES.txt' 2026-02-08T23:52:48,030 /tmp/pip-build-env-qxxs5709/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'gget.bins.Darwin' is absent from the `packages` configuration. 2026-02-08T23:52:48,031 !! 2026-02-08T23:52:48,032 ******************************************************************************** 2026-02-08T23:52:48,032 ############################ 2026-02-08T23:52:48,033 # Package would be ignored # 2026-02-08T23:52:48,033 ############################ 2026-02-08T23:52:48,034 Python recognizes 'gget.bins.Darwin' as an importable package[^1], 2026-02-08T23:52:48,034 but it is absent from setuptools' `packages` configuration. 2026-02-08T23:52:48,035 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-08T23:52:48,036 package, please make sure that 'gget.bins.Darwin' is explicitly added 2026-02-08T23:52:48,036 to the `packages` configuration field. 2026-02-08T23:52:48,037 Alternatively, you can also rely on setuptools' discovery methods 2026-02-08T23:52:48,038 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-08T23:52:48,038 instead of `find_packages(...)`/`find:`). 2026-02-08T23:52:48,039 You can read more about "package discovery" on setuptools documentation page: 2026-02-08T23:52:48,040 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-08T23:52:48,042 If you don't want 'gget.bins.Darwin' to be distributed and are 2026-02-08T23:52:48,042 already explicitly excluding 'gget.bins.Darwin' via 2026-02-08T23:52:48,043 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-08T23:52:48,043 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-08T23:52:48,044 combination with a more fine grained `package-data` configuration. 2026-02-08T23:52:48,045 You can read more about "package data files" on setuptools documentation page: 2026-02-08T23:52:48,046 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-08T23:52:48,048 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-08T23:52:48,048 even if it does not contain any `.py` files. 2026-02-08T23:52:48,049 On the other hand, currently there is no concept of package data 2026-02-08T23:52:48,049 directory, all directories are treated like packages. 2026-02-08T23:52:48,050 ******************************************************************************** 2026-02-08T23:52:48,051 !! 2026-02-08T23:52:48,052 check.warn(importable) 2026-02-08T23:52:48,052 /tmp/pip-build-env-qxxs5709/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'gget.bins.Linux' is absent from the `packages` configuration. 2026-02-08T23:52:48,053 !! 2026-02-08T23:52:48,054 ******************************************************************************** 2026-02-08T23:52:48,054 ############################ 2026-02-08T23:52:48,055 # Package would be ignored # 2026-02-08T23:52:48,056 ############################ 2026-02-08T23:52:48,056 Python recognizes 'gget.bins.Linux' as an importable package[^1], 2026-02-08T23:52:48,057 but it is absent from setuptools' `packages` configuration. 2026-02-08T23:52:48,059 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-08T23:52:48,059 package, please make sure that 'gget.bins.Linux' is explicitly added 2026-02-08T23:52:48,059 to the `packages` configuration field. 2026-02-08T23:52:48,060 Alternatively, you can also rely on setuptools' discovery methods 2026-02-08T23:52:48,061 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-08T23:52:48,061 instead of `find_packages(...)`/`find:`). 2026-02-08T23:52:48,062 You can read more about "package discovery" on setuptools documentation page: 2026-02-08T23:52:48,063 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-08T23:52:48,064 If you don't want 'gget.bins.Linux' to be distributed and are 2026-02-08T23:52:48,064 already explicitly excluding 'gget.bins.Linux' via 2026-02-08T23:52:48,065 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-08T23:52:48,065 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-08T23:52:48,066 combination with a more fine grained `package-data` configuration. 2026-02-08T23:52:48,067 You can read more about "package data files" on setuptools documentation page: 2026-02-08T23:52:48,068 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-08T23:52:48,069 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-08T23:52:48,070 even if it does not contain any `.py` files. 2026-02-08T23:52:48,070 On the other hand, currently there is no concept of package data 2026-02-08T23:52:48,071 directory, all directories are treated like packages. 2026-02-08T23:52:48,071 ******************************************************************************** 2026-02-08T23:52:48,072 !! 2026-02-08T23:52:48,073 check.warn(importable) 2026-02-08T23:52:48,073 /tmp/pip-build-env-qxxs5709/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'gget.bins.Windows' is absent from the `packages` configuration. 2026-02-08T23:52:48,074 !! 2026-02-08T23:52:48,075 ******************************************************************************** 2026-02-08T23:52:48,076 ############################ 2026-02-08T23:52:48,076 # Package would be ignored # 2026-02-08T23:52:48,077 ############################ 2026-02-08T23:52:48,077 Python recognizes 'gget.bins.Windows' as an importable package[^1], 2026-02-08T23:52:48,078 but it is absent from setuptools' `packages` configuration. 2026-02-08T23:52:48,079 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-08T23:52:48,079 package, please make sure that 'gget.bins.Windows' is explicitly added 2026-02-08T23:52:48,080 to the `packages` configuration field. 2026-02-08T23:52:48,081 Alternatively, you can also rely on setuptools' discovery methods 2026-02-08T23:52:48,082 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-08T23:52:48,082 instead of `find_packages(...)`/`find:`). 2026-02-08T23:52:48,083 You can read more about "package discovery" on setuptools documentation page: 2026-02-08T23:52:48,084 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-08T23:52:48,086 If you don't want 'gget.bins.Windows' to be distributed and are 2026-02-08T23:52:48,086 already explicitly excluding 'gget.bins.Windows' via 2026-02-08T23:52:48,087 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-08T23:52:48,087 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-08T23:52:48,089 combination with a more fine grained `package-data` configuration. 2026-02-08T23:52:48,090 You can read more about "package data files" on setuptools documentation page: 2026-02-08T23:52:48,090 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-08T23:52:48,092 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-08T23:52:48,092 even if it does not contain any `.py` files. 2026-02-08T23:52:48,093 On the other hand, currently there is no concept of package data 2026-02-08T23:52:48,093 directory, all directories are treated like packages. 2026-02-08T23:52:48,093 ******************************************************************************** 2026-02-08T23:52:48,094 !! 2026-02-08T23:52:48,095 check.warn(importable) 2026-02-08T23:52:48,095 /tmp/pip-build-env-qxxs5709/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'gget.bins.alphafold' is absent from the `packages` configuration. 2026-02-08T23:52:48,096 !! 2026-02-08T23:52:48,096 ******************************************************************************** 2026-02-08T23:52:48,097 ############################ 2026-02-08T23:52:48,098 # Package would be ignored # 2026-02-08T23:52:48,098 ############################ 2026-02-08T23:52:48,099 Python recognizes 'gget.bins.alphafold' as an importable package[^1], 2026-02-08T23:52:48,099 but it is absent from setuptools' `packages` configuration. 2026-02-08T23:52:48,100 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-08T23:52:48,101 package, please make sure that 'gget.bins.alphafold' is explicitly added 2026-02-08T23:52:48,101 to the `packages` configuration field. 2026-02-08T23:52:48,102 Alternatively, you can also rely on setuptools' discovery methods 2026-02-08T23:52:48,103 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-08T23:52:48,104 instead of `find_packages(...)`/`find:`). 2026-02-08T23:52:48,105 You can read more about "package discovery" on setuptools documentation page: 2026-02-08T23:52:48,106 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-08T23:52:48,107 If you don't want 'gget.bins.alphafold' to be distributed and are 2026-02-08T23:52:48,108 already explicitly excluding 'gget.bins.alphafold' via 2026-02-08T23:52:48,108 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-08T23:52:48,109 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-08T23:52:48,109 combination with a more fine grained `package-data` configuration. 2026-02-08T23:52:48,111 You can read more about "package data files" on setuptools documentation page: 2026-02-08T23:52:48,112 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-08T23:52:48,113 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-08T23:52:48,114 even if it does not contain any `.py` files. 2026-02-08T23:52:48,115 On the other hand, currently there is no concept of package data 2026-02-08T23:52:48,115 directory, all directories are treated like packages. 2026-02-08T23:52:48,116 ******************************************************************************** 2026-02-08T23:52:48,117 !! 2026-02-08T23:52:48,117 check.warn(importable) 2026-02-08T23:52:48,118 /tmp/pip-build-env-qxxs5709/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'gget.constants' is absent from the `packages` configuration. 2026-02-08T23:52:48,119 !! 2026-02-08T23:52:48,120 ******************************************************************************** 2026-02-08T23:52:48,121 ############################ 2026-02-08T23:52:48,122 # Package would be ignored # 2026-02-08T23:52:48,122 ############################ 2026-02-08T23:52:48,122 Python recognizes 'gget.constants' as an importable package[^1], 2026-02-08T23:52:48,123 but it is absent from setuptools' `packages` configuration. 2026-02-08T23:52:48,124 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-08T23:52:48,124 package, please make sure that 'gget.constants' is explicitly added 2026-02-08T23:52:48,125 to the `packages` configuration field. 2026-02-08T23:52:48,126 Alternatively, you can also rely on setuptools' discovery methods 2026-02-08T23:52:48,126 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-08T23:52:48,127 instead of `find_packages(...)`/`find:`). 2026-02-08T23:52:48,128 You can read more about "package discovery" on setuptools documentation page: 2026-02-08T23:52:48,129 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-08T23:52:48,130 If you don't want 'gget.constants' to be distributed and are 2026-02-08T23:52:48,130 already explicitly excluding 'gget.constants' via 2026-02-08T23:52:48,130 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-08T23:52:48,131 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-08T23:52:48,131 combination with a more fine grained `package-data` configuration. 2026-02-08T23:52:48,132 You can read more about "package data files" on setuptools documentation page: 2026-02-08T23:52:48,133 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-08T23:52:48,135 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-08T23:52:48,136 even if it does not contain any `.py` files. 2026-02-08T23:52:48,136 On the other hand, currently there is no concept of package data 2026-02-08T23:52:48,137 directory, all directories are treated like packages. 2026-02-08T23:52:48,137 ******************************************************************************** 2026-02-08T23:52:48,139 !! 2026-02-08T23:52:48,139 check.warn(importable) 2026-02-08T23:52:48,140 creating build/lib/gget/bins/Darwin 2026-02-08T23:52:48,140 copying gget/bins/Darwin/datasets -> build/lib/gget/bins/Darwin 2026-02-08T23:52:48,585 copying gget/bins/Darwin/diamond -> build/lib/gget/bins/Darwin 2026-02-08T23:52:49,168 copying gget/bins/Darwin/jackhmmer -> build/lib/gget/bins/Darwin 2026-02-08T23:52:49,215 copying gget/bins/Darwin/license.txt -> build/lib/gget/bins/Darwin 2026-02-08T23:52:49,218 copying gget/bins/Darwin/muscle -> build/lib/gget/bins/Darwin 2026-02-08T23:52:49,273 creating build/lib/gget/bins/Linux 2026-02-08T23:52:49,274 copying gget/bins/Linux/datasets -> build/lib/gget/bins/Linux 2026-02-08T23:52:49,937 copying gget/bins/Linux/diamond -> build/lib/gget/bins/Linux 2026-02-08T23:52:52,571 copying gget/bins/Linux/jackhmmer -> build/lib/gget/bins/Linux 2026-02-08T23:52:52,591 copying gget/bins/Linux/license.txt -> build/lib/gget/bins/Linux 2026-02-08T23:52:52,594 copying gget/bins/Linux/muscle -> build/lib/gget/bins/Linux 2026-02-08T23:52:52,610 creating build/lib/gget/bins/Windows 2026-02-08T23:52:52,611 copying gget/bins/Windows/datasets.exe -> build/lib/gget/bins/Windows 2026-02-08T23:52:52,888 copying gget/bins/Windows/diamond.exe -> build/lib/gget/bins/Windows 2026-02-08T23:52:53,213 copying gget/bins/Windows/license.txt -> build/lib/gget/bins/Windows 2026-02-08T23:52:53,217 copying gget/bins/Windows/muscle.win64.exe -> build/lib/gget/bins/Windows 2026-02-08T23:52:53,233 creating build/lib/gget/bins/alphafold 2026-02-08T23:52:53,234 copying gget/bins/alphafold/LICENSE -> build/lib/gget/bins/alphafold 2026-02-08T23:52:53,237 copying gget/bins/alphafold/NOTICE -> build/lib/gget/bins/alphafold 2026-02-08T23:52:53,239 copying gget/bins/alphafold/stereo_chemical_props.txt -> build/lib/gget/bins/alphafold 2026-02-08T23:52:53,242 creating build/lib/gget/constants 2026-02-08T23:52:53,243 copying gget/constants/enrichr_bkg_genes.txt -> build/lib/gget/constants 2026-02-08T23:52:53,261 installing to build/bdist.linux-armv7l/wheel 2026-02-08T23:52:53,261 running install 2026-02-08T23:52:53,284 running install_lib 2026-02-08T23:52:53,295 creating build/bdist.linux-armv7l/wheel 2026-02-08T23:52:53,297 creating build/bdist.linux-armv7l/wheel/gget 2026-02-08T23:52:53,298 copying build/lib/gget/gget_seq.py -> build/bdist.linux-armv7l/wheel/./gget 2026-02-08T23:52:53,302 creating build/bdist.linux-armv7l/wheel/gget/constants 2026-02-08T23:52:53,302 copying build/lib/gget/constants/enrichr_bkg_genes.txt -> build/bdist.linux-armv7l/wheel/./gget/constants 2026-02-08T23:52:53,307 copying build/lib/gget/gget_ref.py -> build/bdist.linux-armv7l/wheel/./gget 2026-02-08T23:52:53,310 copying build/lib/gget/gget_cosmic.py -> build/bdist.linux-armv7l/wheel/./gget 2026-02-08T23:52:53,313 copying build/lib/gget/__main__.py -> build/bdist.linux-armv7l/wheel/./gget 2026-02-08T23:52:53,315 copying build/lib/gget/gget_setup.py -> build/bdist.linux-armv7l/wheel/./gget 2026-02-08T23:52:53,317 copying build/lib/gget/gget_alphafold.py -> build/bdist.linux-armv7l/wheel/./gget 2026-02-08T23:52:53,320 copying build/lib/gget/utils.py -> build/bdist.linux-armv7l/wheel/./gget 2026-02-08T23:52:53,323 copying build/lib/gget/gget_mutate.py -> build/bdist.linux-armv7l/wheel/./gget 2026-02-08T23:52:53,326 copying build/lib/gget/__init__.py -> build/bdist.linux-armv7l/wheel/./gget 2026-02-08T23:52:53,328 copying build/lib/gget/gget_elm.py -> build/bdist.linux-armv7l/wheel/./gget 2026-02-08T23:52:53,331 copying build/lib/gget/main.py -> build/bdist.linux-armv7l/wheel/./gget 2026-02-08T23:52:53,336 copying build/lib/gget/gget_cellxgene.py -> build/bdist.linux-armv7l/wheel/./gget 2026-02-08T23:52:53,338 copying build/lib/gget/gget_enrichr.py -> build/bdist.linux-armv7l/wheel/./gget 2026-02-08T23:52:53,341 copying build/lib/gget/gget_8cube.py -> build/bdist.linux-armv7l/wheel/./gget 2026-02-08T23:52:53,343 copying build/lib/gget/gget_gpt.py -> build/bdist.linux-armv7l/wheel/./gget 2026-02-08T23:52:53,345 copying build/lib/gget/gget_blast.py -> build/bdist.linux-armv7l/wheel/./gget 2026-02-08T23:52:53,348 copying build/lib/gget/gget_bgee.py -> build/bdist.linux-armv7l/wheel/./gget 2026-02-08T23:52:53,350 copying build/lib/gget/compile.py -> build/bdist.linux-armv7l/wheel/./gget 2026-02-08T23:52:53,352 copying build/lib/gget/gget_virus.py -> build/bdist.linux-armv7l/wheel/./gget 2026-02-08T23:52:53,357 copying build/lib/gget/gget_blat.py -> build/bdist.linux-armv7l/wheel/./gget 2026-02-08T23:52:53,360 copying build/lib/gget/gget_opentargets.py -> build/bdist.linux-armv7l/wheel/./gget 2026-02-08T23:52:53,362 copying build/lib/gget/gget_archs4.py -> build/bdist.linux-armv7l/wheel/./gget 2026-02-08T23:52:53,364 copying build/lib/gget/gget_muscle.py -> build/bdist.linux-armv7l/wheel/./gget 2026-02-08T23:52:53,367 copying build/lib/gget/constants.py -> build/bdist.linux-armv7l/wheel/./gget 2026-02-08T23:52:53,369 copying build/lib/gget/gget_cbio.py -> build/bdist.linux-armv7l/wheel/./gget 2026-02-08T23:52:53,372 copying build/lib/gget/gget_pdb.py -> build/bdist.linux-armv7l/wheel/./gget 2026-02-08T23:52:53,375 creating build/bdist.linux-armv7l/wheel/gget/bins 2026-02-08T23:52:53,376 creating build/bdist.linux-armv7l/wheel/gget/bins/Darwin 2026-02-08T23:52:53,378 copying build/lib/gget/bins/Darwin/license.txt -> build/bdist.linux-armv7l/wheel/./gget/bins/Darwin 2026-02-08T23:52:53,381 copying build/lib/gget/bins/Darwin/jackhmmer -> build/bdist.linux-armv7l/wheel/./gget/bins/Darwin 2026-02-08T23:52:53,398 copying build/lib/gget/bins/Darwin/diamond -> build/bdist.linux-armv7l/wheel/./gget/bins/Darwin 2026-02-08T23:52:53,686 copying build/lib/gget/bins/Darwin/datasets -> build/bdist.linux-armv7l/wheel/./gget/bins/Darwin 2026-02-08T23:52:54,881 copying build/lib/gget/bins/Darwin/muscle -> build/bdist.linux-armv7l/wheel/./gget/bins/Darwin 2026-02-08T23:52:54,899 creating build/bdist.linux-armv7l/wheel/gget/bins/Windows 2026-02-08T23:52:54,900 copying build/lib/gget/bins/Windows/muscle.win64.exe -> build/bdist.linux-armv7l/wheel/./gget/bins/Windows 2026-02-08T23:52:54,918 copying build/lib/gget/bins/Windows/license.txt -> build/bdist.linux-armv7l/wheel/./gget/bins/Windows 2026-02-08T23:52:54,920 copying build/lib/gget/bins/Windows/diamond.exe -> build/bdist.linux-armv7l/wheel/./gget/bins/Windows 2026-02-08T23:52:55,699 copying build/lib/gget/bins/Windows/datasets.exe -> build/bdist.linux-armv7l/wheel/./gget/bins/Windows 2026-02-08T23:52:56,387 creating build/bdist.linux-armv7l/wheel/gget/bins/alphafold 2026-02-08T23:52:56,388 copying build/lib/gget/bins/alphafold/stereo_chemical_props.txt -> build/bdist.linux-armv7l/wheel/./gget/bins/alphafold 2026-02-08T23:52:56,391 copying build/lib/gget/bins/alphafold/LICENSE -> build/bdist.linux-armv7l/wheel/./gget/bins/alphafold 2026-02-08T23:52:56,393 copying build/lib/gget/bins/alphafold/NOTICE -> build/bdist.linux-armv7l/wheel/./gget/bins/alphafold 2026-02-08T23:52:56,396 creating build/bdist.linux-armv7l/wheel/gget/bins/Linux 2026-02-08T23:52:56,397 copying build/lib/gget/bins/Linux/license.txt -> build/bdist.linux-armv7l/wheel/./gget/bins/Linux 2026-02-08T23:52:56,400 copying build/lib/gget/bins/Linux/jackhmmer -> build/bdist.linux-armv7l/wheel/./gget/bins/Linux 2026-02-08T23:52:56,431 copying build/lib/gget/bins/Linux/diamond -> build/bdist.linux-armv7l/wheel/./gget/bins/Linux 2026-02-08T23:52:57,948 copying build/lib/gget/bins/Linux/datasets -> build/bdist.linux-armv7l/wheel/./gget/bins/Linux 2026-02-08T23:52:58,226 copying build/lib/gget/bins/Linux/muscle -> build/bdist.linux-armv7l/wheel/./gget/bins/Linux 2026-02-08T23:52:58,241 copying build/lib/gget/gget_info.py -> build/bdist.linux-armv7l/wheel/./gget 2026-02-08T23:52:58,243 copying build/lib/gget/gget_diamond.py -> build/bdist.linux-armv7l/wheel/./gget 2026-02-08T23:52:58,246 copying build/lib/gget/gget_search.py -> build/bdist.linux-armv7l/wheel/./gget 2026-02-08T23:52:58,248 running install_egg_info 2026-02-08T23:52:58,262 Copying gget.egg-info to build/bdist.linux-armv7l/wheel/./gget-0.30.0-py3.11.egg-info 2026-02-08T23:52:58,275 running install_scripts 2026-02-08T23:52:58,286 creating build/bdist.linux-armv7l/wheel/gget-0.30.0.dist-info/WHEEL 2026-02-08T23:52:58,289 creating '/tmp/pip-wheel-xmu4dkte/.tmp-8coioqbx/gget-0.30.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-02-08T23:52:58,292 adding 'gget/__init__.py' 2026-02-08T23:52:58,293 adding 'gget/__main__.py' 2026-02-08T23:52:58,294 adding 'gget/compile.py' 2026-02-08T23:52:58,296 adding 'gget/constants.py' 2026-02-08T23:52:58,298 adding 'gget/gget_8cube.py' 2026-02-08T23:52:58,302 adding 'gget/gget_alphafold.py' 2026-02-08T23:52:58,304 adding 'gget/gget_archs4.py' 2026-02-08T23:52:58,306 adding 'gget/gget_bgee.py' 2026-02-08T23:52:58,308 adding 'gget/gget_blast.py' 2026-02-08T23:52:58,310 adding 'gget/gget_blat.py' 2026-02-08T23:52:58,315 adding 'gget/gget_cbio.py' 2026-02-08T23:52:58,317 adding 'gget/gget_cellxgene.py' 2026-02-08T23:52:58,321 adding 'gget/gget_cosmic.py' 2026-02-08T23:52:58,323 adding 'gget/gget_diamond.py' 2026-02-08T23:52:58,326 adding 'gget/gget_elm.py' 2026-02-08T23:52:58,328 adding 'gget/gget_enrichr.py' 2026-02-08T23:52:58,330 adding 'gget/gget_gpt.py' 2026-02-08T23:52:58,333 adding 'gget/gget_info.py' 2026-02-08T23:52:58,335 adding 'gget/gget_muscle.py' 2026-02-08T23:52:58,341 adding 'gget/gget_mutate.py' 2026-02-08T23:52:58,344 adding 'gget/gget_opentargets.py' 2026-02-08T23:52:58,345 adding 'gget/gget_pdb.py' 2026-02-08T23:52:58,348 adding 'gget/gget_ref.py' 2026-02-08T23:52:58,350 adding 'gget/gget_search.py' 2026-02-08T23:52:58,352 adding 'gget/gget_seq.py' 2026-02-08T23:52:58,355 adding 'gget/gget_setup.py' 2026-02-08T23:52:58,378 adding 'gget/gget_virus.py' 2026-02-08T23:52:58,390 adding 'gget/main.py' 2026-02-08T23:52:58,395 adding 'gget/utils.py' 2026-02-08T23:53:03,869 adding 'gget/bins/Darwin/datasets' 2026-02-08T23:53:05,585 adding 'gget/bins/Darwin/diamond' 2026-02-08T23:53:05,852 adding 'gget/bins/Darwin/jackhmmer' 2026-02-08T23:53:05,865 adding 'gget/bins/Darwin/license.txt' 2026-02-08T23:53:06,042 adding 'gget/bins/Darwin/muscle' 2026-02-08T23:53:08,806 adding 'gget/bins/Linux/datasets' 2026-02-08T23:53:24,063 adding 'gget/bins/Linux/diamond' 2026-02-08T23:53:24,905 adding 'gget/bins/Linux/jackhmmer' 2026-02-08T23:53:24,917 adding 'gget/bins/Linux/license.txt' 2026-02-08T23:53:25,083 adding 'gget/bins/Linux/muscle' 2026-02-08T23:53:28,116 adding 'gget/bins/Windows/datasets.exe' 2026-02-08T23:53:32,551 adding 'gget/bins/Windows/diamond.exe' 2026-02-08T23:53:32,702 adding 'gget/bins/Windows/license.txt' 2026-02-08T23:53:32,848 adding 'gget/bins/Windows/muscle.win64.exe' 2026-02-08T23:53:32,856 adding 'gget/bins/alphafold/LICENSE' 2026-02-08T23:53:32,858 adding 'gget/bins/alphafold/NOTICE' 2026-02-08T23:53:32,859 adding 'gget/bins/alphafold/stereo_chemical_props.txt' 2026-02-08T23:53:32,892 adding 'gget/constants/enrichr_bkg_genes.txt' 2026-02-08T23:53:32,896 adding 'gget-0.30.0.dist-info/licenses/LICENSE' 2026-02-08T23:53:32,897 adding 'gget-0.30.0.dist-info/METADATA' 2026-02-08T23:53:32,898 adding 'gget-0.30.0.dist-info/WHEEL' 2026-02-08T23:53:32,899 adding 'gget-0.30.0.dist-info/entry_points.txt' 2026-02-08T23:53:32,900 adding 'gget-0.30.0.dist-info/top_level.txt' 2026-02-08T23:53:32,901 adding 'gget-0.30.0.dist-info/RECORD' 2026-02-08T23:53:32,990 removing build/bdist.linux-armv7l/wheel 2026-02-08T23:53:33,271 Building wheel for gget (pyproject.toml): finished with status 'done' 2026-02-08T23:53:36,258 Created wheel for gget: filename=gget-0.30.0-py3-none-any.whl size=79264098 sha256=b347fe715136fb3fab4e3458920f8ca40e33e7b1d5095851305490f99fc819ab 2026-02-08T23:53:36,259 Stored in directory: /tmp/pip-ephem-wheel-cache-f3ogz6q8/wheels/ba/63/8b/57d5da4fab1fcbe9df17155fcf7a63f79b9ed50d3ccf4981a6 2026-02-08T23:53:36,296 Successfully built gget 2026-02-08T23:53:38,604 Removed build tracker: '/tmp/pip-build-tracker-4_nj8vs3'