2026-02-09T08:52:08,398 Created temporary directory: /tmp/pip-ephem-wheel-cache-wx4tq5ya 2026-02-09T08:52:08,400 Created temporary directory: /tmp/pip-build-tracker-w3z141nf 2026-02-09T08:52:08,400 Initialized build tracking at /tmp/pip-build-tracker-w3z141nf 2026-02-09T08:52:08,401 Created build tracker: /tmp/pip-build-tracker-w3z141nf 2026-02-09T08:52:08,401 Entered build tracker: /tmp/pip-build-tracker-w3z141nf 2026-02-09T08:52:08,402 Created temporary directory: /tmp/pip-wheel-qqef8_ej 2026-02-09T08:52:08,405 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-02-09T08:52:08,408 Created temporary directory: /tmp/pip-ephem-wheel-cache-fzyjni4f 2026-02-09T08:52:08,429 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-02-09T08:52:08,433 2 location(s) to search for versions of onecodex: 2026-02-09T08:52:08,433 * https://pypi.org/simple/onecodex/ 2026-02-09T08:52:08,433 * https://www.piwheels.org/simple/onecodex/ 2026-02-09T08:52:08,434 Fetching project page and analyzing links: https://pypi.org/simple/onecodex/ 2026-02-09T08:52:08,435 Getting page https://pypi.org/simple/onecodex/ 2026-02-09T08:52:08,436 Found index url https://pypi.org/simple 2026-02-09T08:52:08,758 Fetched page https://pypi.org/simple/onecodex/ as application/vnd.pypi.simple.v1+json 2026-02-09T08:52:08,774 Found link https://files.pythonhosted.org/packages/24/9c/73c8ee44a2cc65e1d62fcd0ba2a47860f6d038086b3f68a831ce1c387185/onecodex-0.0.1.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.0.1 2026-02-09T08:52:08,775 Found link https://files.pythonhosted.org/packages/9f/f7/19126a7a026e4d3d4b5dae5300563dd40eedde1ebd7c0ea45d63a5b4a5fa/onecodex-0.0.2.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.0.2 2026-02-09T08:52:08,776 Found link https://files.pythonhosted.org/packages/f1/fb/4bd94bcb3ab1b60d5012d87960cf512ba15e55a41604e4cf95b688c6663e/onecodex-0.0.3.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.0.3 2026-02-09T08:52:08,777 Found link https://files.pythonhosted.org/packages/72/d4/ecf6ce45289f863da44f3679a80890befaf777b56518e4e0687e103f9839/onecodex-0.0.4.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.0.4 2026-02-09T08:52:08,778 Found link https://files.pythonhosted.org/packages/d8/c1/fa293e0fca99ec13e7b102bf370531ac7f191841f86cbe4f49164faee3b1/onecodex-0.0.5.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.0.5 2026-02-09T08:52:08,778 Found link https://files.pythonhosted.org/packages/fd/bd/b242968f0032bfdaccc3b0e99351e06027dac68ab674be09885cae806460/onecodex-0.0.6.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.0.6 2026-02-09T08:52:08,779 Found link https://files.pythonhosted.org/packages/20/2e/d7f2cd658103b3f4fd995b058efa264add5f16eb83c208ea72963076d5f2/onecodex-0.0.7.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.0.7 2026-02-09T08:52:08,780 Found link https://files.pythonhosted.org/packages/2e/df/819bf3408acaef4ed99f2acef6d532e73a27c57031ca2bb5c76f4405d50a/onecodex-0.0.8.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.0.8 2026-02-09T08:52:08,781 Found link https://files.pythonhosted.org/packages/c8/32/87228c95b42bf63e56c4735afb93ee67f95188a5b48936a489b1390c97cd/onecodex-0.0.9.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.0.9 2026-02-09T08:52:08,781 Found link https://files.pythonhosted.org/packages/a3/1a/dcc608efe8f43446c671d58dcc3eb81edf9730bb90ab1a57b7a2315d67b4/onecodex-0.0.10.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.0.10 2026-02-09T08:52:08,782 Found link https://files.pythonhosted.org/packages/fa/cf/5d9bde531654457b5aad1c2612a830bc34f981ff288c1ba206a2e89152cf/onecodex-0.1.0.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.1.0 2026-02-09T08:52:08,783 Found link https://files.pythonhosted.org/packages/6a/66/8a636283b765fd9a02c111ea0094ff7206360245a22fd188fc7ba0b0fa4e/onecodex-0.1.1.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.1.1 2026-02-09T08:52:08,784 Found link https://files.pythonhosted.org/packages/82/b0/a7edb3d0fa23fd8d6c17e7dc2d90ae717a164f04d799ea00aa78af5441df/onecodex-0.1.2.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.1.2 2026-02-09T08:52:08,784 Found link https://files.pythonhosted.org/packages/24/d1/54d92de5608800360a596c150c291000b4d1804be08b9d3ef00b108f0132/onecodex-0.1.3.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.1.3 2026-02-09T08:52:08,785 Found link https://files.pythonhosted.org/packages/21/d5/846f358c3add03793ccd2d3e74b6c2fad2e9acea92fc2777e732a97652d0/onecodex-0.1.4.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.1.4 2026-02-09T08:52:08,785 Found link https://files.pythonhosted.org/packages/85/b8/546d5d950ef763ebf55e4e56149b006d102e3c4c8274dabbd402c9d7fe6b/onecodex-0.2.0a0.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.0a0 2026-02-09T08:52:08,786 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/e5/da/aea6d3115e6e56289c40bec0f0668bf57755d7cf575eb762c928576aa7f1/onecodex-0.2.0a1-py2.7.egg (from https://pypi.org/simple/onecodex/) 2026-02-09T08:52:08,787 Found link 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https://files.pythonhosted.org/packages/10/b1/e66762a2c9e67a0322bbcc96bb413f45749be315163392b79d3060e81649/onecodex-0.2.2.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.2 2026-02-09T08:52:08,790 Found link https://files.pythonhosted.org/packages/cf/0a/10be06247079528cdcfc25c01e6e6496be3c356f8e6ef3ddccb1c1b7816c/onecodex-0.2.3.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.3 2026-02-09T08:52:08,791 Found link https://files.pythonhosted.org/packages/82/32/595064f841cc9ea0ce6b2eebb4c1dfb18b081cc3e3550cebed1ef5fd5850/onecodex-0.2.4.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.4 2026-02-09T08:52:08,792 Found link https://files.pythonhosted.org/packages/3c/26/973ef4701d164d71900cfd4a11e3c85056a33af94b2a61a0906083098eb7/onecodex-0.2.5.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.5 2026-02-09T08:52:08,792 Found link https://files.pythonhosted.org/packages/6e/ae/8453a17f82c65f6c61f8178f81a557ee0dfb94cb525346d1594d65592b61/onecodex-0.2.6.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.6 2026-02-09T08:52:08,793 Found link https://files.pythonhosted.org/packages/5f/cb/d273e336e3cd507a551d9288f00f35fa0d6e82a01d932b820b00c63edf43/onecodex-0.2.7.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.7 2026-02-09T08:52:08,794 Found link https://files.pythonhosted.org/packages/bc/d9/34a3fdda441840eabcabe73cd8656db8d4ea5f4d1e1b77c88577a9910b1a/onecodex-0.2.8.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.8 2026-02-09T08:52:08,794 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/c4/f8/2c0dd006c8e65dcdb9dd5b3d34c38ed2d7bbc283debc760b0197ad5a2e9b/onecodex-0.2.9-py3.6.egg (from https://pypi.org/simple/onecodex/) 2026-02-09T08:52:08,795 Found link https://files.pythonhosted.org/packages/af/c2/c27f749fbe7ff040cbabf6921448a1f57e0687b6f8cab9b265bae0803030/onecodex-0.2.9.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.9 2026-02-09T08:52:08,795 Found link https://files.pythonhosted.org/packages/09/d9/e71331423eaf002ea99b1f4e7a61b167f6f8f4091e591c567f13c4df878a/onecodex-0.2.10.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.10 2026-02-09T08:52:08,796 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/8e/66/675d1c7ac150dda99fd9dd10f6e037aa3e71260a707505135c929120c818/onecodex-0.2.11-py2.7.egg (from https://pypi.org/simple/onecodex/) 2026-02-09T08:52:08,797 Found link https://files.pythonhosted.org/packages/61/3d/3bfc5c37fa0daddb13725a2cbc69418e0303a7af8a81ccc8d65ebc03713b/onecodex-0.2.11.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.11 2026-02-09T08:52:08,797 Found link https://files.pythonhosted.org/packages/84/97/d065263086b24cb4b74c104fd5c07384922cc81a32615ada074895088912/onecodex-0.2.12.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.12 2026-02-09T08:52:08,798 Found link https://files.pythonhosted.org/packages/95/1f/08fe44513e1d7015a9bda132762df927c1831b245de56b7a0a7447bd06b1/onecodex-0.2.13.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.13 2026-02-09T08:52:08,798 Found link https://files.pythonhosted.org/packages/89/72/8cf2d2a53515ae790ed8c304cf44c5c9376afa6f355f905301b51a045968/onecodex-0.2.14.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.14 2026-02-09T08:52:08,799 Found link https://files.pythonhosted.org/packages/d2/33/01ef57f7b9532ca79565e1fad4cffff2ea96847facf7cd09121aa0c9780c/onecodex-0.3.0.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.3.0 2026-02-09T08:52:08,800 Found link https://files.pythonhosted.org/packages/92/f1/20a29b09336a443c540d7fb710c9a9a77a860bbf4489407f306bc44e6d7a/onecodex-0.3.1.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.3.1 2026-02-09T08:52:08,800 Found link https://files.pythonhosted.org/packages/a1/94/aaf2d1c459b2a95645bde3466b9df0320f8a5190c05f808e5096948e3889/onecodex-0.4.0.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.4.0 2026-02-09T08:52:08,801 Found link https://files.pythonhosted.org/packages/00/51/9370127517278c891b95881cda1d25569a2942a007e6111534c544d7251d/onecodex-0.4.1.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.4.1 2026-02-09T08:52:08,802 Found link https://files.pythonhosted.org/packages/e3/5f/338c31066f5ff9145adc40c6e7bad1c61e2af1c7f6f19f9b1a10fb09cb79/onecodex-0.4.2.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.4.2 2026-02-09T08:52:08,802 Found link https://files.pythonhosted.org/packages/19/13/577ee6148607a6ba5182169dbc5b93b40afc470a86a27c9c6c01dbe5ef84/onecodex-0.4.3.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.4.3 2026-02-09T08:52:08,803 Found link https://files.pythonhosted.org/packages/3d/38/db4d7a8cbbd891818bc6da3ba3b65746d763038ec29bfd168f5696aea018/onecodex-0.4.4.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.4.4 2026-02-09T08:52:08,804 Found link https://files.pythonhosted.org/packages/c0/05/1c8e3be543c28d8f5a79bfd332dcc80a95b083bd478fede3aa692fc5fb5c/onecodex-0.4.5.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.4.5 2026-02-09T08:52:08,805 Found link https://files.pythonhosted.org/packages/f8/98/b7480b33c672eb2f3c76644bcdf3103e6bd9dd9838c78b90adc2f6ef23f0/onecodex-0.5.0.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.5.0 2026-02-09T08:52:08,805 Found link 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https://files.pythonhosted.org/packages/f0/ca/37e17d697175c93b6669f6eb783e5a49978abfe64b8ef923b5fe0fb4309a/onecodex-0.7.0.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.7.0 2026-02-09T08:52:08,814 Found link https://files.pythonhosted.org/packages/a2/8e/3d26edbef0aea6014df4e911713df25e32b742c3e3423b77fc845a54cf7c/onecodex-0.7.1.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.7.1 2026-02-09T08:52:08,815 Found link https://files.pythonhosted.org/packages/99/58/2bb966c49d731cabfde0889d7de9d9bd3b9d64b700f9aa7a697e2a12eb83/onecodex-0.7.2.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.7.2 2026-02-09T08:52:08,815 Found link https://files.pythonhosted.org/packages/fd/bf/97dc6445a5a33628fe2d2b22169c0fa5755fba3584861605b135ccb45f19/onecodex-0.8.0.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.8.0 2026-02-09T08:52:08,816 Found link 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https://www.piwheels.org/simple/onecodex/) 2026-02-09T08:52:09,070 Skipping link: not a file: https://www.piwheels.org/simple/onecodex/ 2026-02-09T08:52:09,071 Skipping link: not a file: https://pypi.org/simple/onecodex/ 2026-02-09T08:52:09,099 Given no hashes to check 1 links for project 'onecodex': discarding no candidates 2026-02-09T08:52:09,117 Collecting onecodex==0.19.4 2026-02-09T08:52:09,120 Created temporary directory: /tmp/pip-unpack-wnz_h3be 2026-02-09T08:52:09,731 Downloading onecodex-0.19.4.tar.gz (3.8 MB) 2026-02-09T08:52:10,882 Added onecodex==0.19.4 from https://files.pythonhosted.org/packages/3f/82/df6063f4783a17f6a43c31a369aa3b379f20a99c1a7efd3f68169edabce2/onecodex-0.19.4.tar.gz to build tracker '/tmp/pip-build-tracker-w3z141nf' 2026-02-09T08:52:10,890 Created temporary directory: /tmp/pip-build-env-0y38_jw4 2026-02-09T08:52:10,895 Installing build dependencies: started 2026-02-09T08:52:10,896 Running command pip subprocess to install build dependencies 2026-02-09T08:52:12,042 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-02-09T08:52:12,622 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-02-09T08:52:12,647 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-02-09T08:52:14,384 Collecting setuptools>=61.0 2026-02-09T08:52:14,404 Using cached setuptools-82.0.0-py3-none-any.whl (1.0 MB) 2026-02-09T08:52:14,782 Collecting setuptools-scm 2026-02-09T08:52:14,799 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-9.2.2-py3-none-any.whl (62 kB) 2026-02-09T08:52:14,994 Collecting packaging>=20 2026-02-09T08:52:15,001 Using cached packaging-26.0-py3-none-any.whl (74 kB) 2026-02-09T08:52:18,012 Installing collected packages: setuptools, packaging, setuptools-scm 2026-02-09T08:52:22,245 Creating /tmp/pip-build-env-0y38_jw4/overlay/local/bin 2026-02-09T08:52:22,247 changing mode of /tmp/pip-build-env-0y38_jw4/overlay/local/bin/setuptools-scm to 755 2026-02-09T08:52:22,271 Successfully installed packaging-26.0 setuptools-82.0.0 setuptools-scm-9.2.2 2026-02-09T08:52:22,560 Installing build dependencies: finished with status 'done' 2026-02-09T08:52:22,567 Getting requirements to build wheel: started 2026-02-09T08:52:22,568 Running command Getting requirements to build wheel 2026-02-09T08:52:23,190 toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section 2026-02-09T08:52:23,260 /tmp/pip-build-env-0y38_jw4/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-02-09T08:52:23,261 !! 2026-02-09T08:52:23,262 ******************************************************************************** 2026-02-09T08:52:23,263 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-02-09T08:52:23,264 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-02-09T08:52:23,264 or your builds will no longer be supported. 2026-02-09T08:52:23,265 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-09T08:52:23,266 ******************************************************************************** 2026-02-09T08:52:23,266 !! 2026-02-09T08:52:23,267 corresp(dist, value, root_dir) 2026-02-09T08:52:23,344 /tmp/pip-build-env-0y38_jw4/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-02-09T08:52:23,345 !! 2026-02-09T08:52:23,346 ******************************************************************************** 2026-02-09T08:52:23,346 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-02-09T08:52:23,347 License :: OSI Approved :: MIT License 2026-02-09T08:52:23,348 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-09T08:52:23,348 ******************************************************************************** 2026-02-09T08:52:23,349 !! 2026-02-09T08:52:23,350 dist._finalize_license_expression() 2026-02-09T08:52:23,351 /tmp/pip-build-env-0y38_jw4/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-02-09T08:52:23,351 !! 2026-02-09T08:52:23,352 ******************************************************************************** 2026-02-09T08:52:23,353 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-02-09T08:52:23,354 License :: OSI Approved :: MIT License 2026-02-09T08:52:23,355 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-09T08:52:23,356 ******************************************************************************** 2026-02-09T08:52:23,357 !! 2026-02-09T08:52:23,358 self._finalize_license_expression() 2026-02-09T08:52:23,359 running egg_info 2026-02-09T08:52:23,365 writing onecodex.egg-info/PKG-INFO 2026-02-09T08:52:23,374 writing dependency_links to onecodex.egg-info/dependency_links.txt 2026-02-09T08:52:23,376 writing entry points to onecodex.egg-info/entry_points.txt 2026-02-09T08:52:23,381 writing requirements to onecodex.egg-info/requires.txt 2026-02-09T08:52:23,382 writing top-level names to onecodex.egg-info/top_level.txt 2026-02-09T08:52:23,445 listing git files failed - pretending there aren't any 2026-02-09T08:52:23,452 reading manifest file 'onecodex.egg-info/SOURCES.txt' 2026-02-09T08:52:23,467 reading manifest template 'MANIFEST.in' 2026-02-09T08:52:23,470 warning: no files found matching 'pytest.ini' 2026-02-09T08:52:23,471 warning: no directories found matching 'licenses' 2026-02-09T08:52:23,471 adding license file 'LICENSE' 2026-02-09T08:52:23,480 writing manifest file 'onecodex.egg-info/SOURCES.txt' 2026-02-09T08:52:23,584 Getting requirements to build wheel: finished with status 'done' 2026-02-09T08:52:23,587 Created temporary directory: /tmp/pip-modern-metadata-4xmsegrh 2026-02-09T08:52:23,590 Preparing metadata (pyproject.toml): started 2026-02-09T08:52:23,591 Running command Preparing metadata (pyproject.toml) 2026-02-09T08:52:24,172 toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section 2026-02-09T08:52:24,225 /tmp/pip-build-env-0y38_jw4/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-02-09T08:52:24,226 !! 2026-02-09T08:52:24,227 ******************************************************************************** 2026-02-09T08:52:24,227 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-02-09T08:52:24,228 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-02-09T08:52:24,229 or your builds will no longer be supported. 2026-02-09T08:52:24,230 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-09T08:52:24,230 ******************************************************************************** 2026-02-09T08:52:24,231 !! 2026-02-09T08:52:24,232 corresp(dist, value, root_dir) 2026-02-09T08:52:24,305 /tmp/pip-build-env-0y38_jw4/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-02-09T08:52:24,305 !! 2026-02-09T08:52:24,306 ******************************************************************************** 2026-02-09T08:52:24,307 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-02-09T08:52:24,308 License :: OSI Approved :: MIT License 2026-02-09T08:52:24,309 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-09T08:52:24,310 ******************************************************************************** 2026-02-09T08:52:24,311 !! 2026-02-09T08:52:24,311 dist._finalize_license_expression() 2026-02-09T08:52:24,312 /tmp/pip-build-env-0y38_jw4/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-02-09T08:52:24,312 !! 2026-02-09T08:52:24,313 ******************************************************************************** 2026-02-09T08:52:24,314 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-02-09T08:52:24,315 License :: OSI Approved :: MIT License 2026-02-09T08:52:24,316 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-09T08:52:24,317 ******************************************************************************** 2026-02-09T08:52:24,318 !! 2026-02-09T08:52:24,318 self._finalize_license_expression() 2026-02-09T08:52:24,319 running dist_info 2026-02-09T08:52:24,331 creating /tmp/pip-modern-metadata-4xmsegrh/onecodex.egg-info 2026-02-09T08:52:24,332 writing /tmp/pip-modern-metadata-4xmsegrh/onecodex.egg-info/PKG-INFO 2026-02-09T08:52:24,343 writing dependency_links to /tmp/pip-modern-metadata-4xmsegrh/onecodex.egg-info/dependency_links.txt 2026-02-09T08:52:24,345 writing entry points to /tmp/pip-modern-metadata-4xmsegrh/onecodex.egg-info/entry_points.txt 2026-02-09T08:52:24,350 writing requirements to /tmp/pip-modern-metadata-4xmsegrh/onecodex.egg-info/requires.txt 2026-02-09T08:52:24,351 writing top-level names to /tmp/pip-modern-metadata-4xmsegrh/onecodex.egg-info/top_level.txt 2026-02-09T08:52:24,352 writing manifest file '/tmp/pip-modern-metadata-4xmsegrh/onecodex.egg-info/SOURCES.txt' 2026-02-09T08:52:24,407 listing git files failed - pretending there aren't any 2026-02-09T08:52:24,414 reading manifest file '/tmp/pip-modern-metadata-4xmsegrh/onecodex.egg-info/SOURCES.txt' 2026-02-09T08:52:24,416 reading manifest template 'MANIFEST.in' 2026-02-09T08:52:24,419 warning: no files found matching 'pytest.ini' 2026-02-09T08:52:24,420 warning: no directories found matching 'licenses' 2026-02-09T08:52:24,420 adding license file 'LICENSE' 2026-02-09T08:52:24,425 writing manifest file '/tmp/pip-modern-metadata-4xmsegrh/onecodex.egg-info/SOURCES.txt' 2026-02-09T08:52:24,426 creating '/tmp/pip-modern-metadata-4xmsegrh/onecodex-0.19.4.dist-info' 2026-02-09T08:52:24,561 Preparing metadata (pyproject.toml): finished with status 'done' 2026-02-09T08:52:24,566 Source in /tmp/pip-wheel-qqef8_ej/onecodex_9760b68850994e188c62d2e2dd2ac39a has version 0.19.4, which satisfies requirement onecodex==0.19.4 from https://files.pythonhosted.org/packages/3f/82/df6063f4783a17f6a43c31a369aa3b379f20a99c1a7efd3f68169edabce2/onecodex-0.19.4.tar.gz 2026-02-09T08:52:24,567 Removed onecodex==0.19.4 from https://files.pythonhosted.org/packages/3f/82/df6063f4783a17f6a43c31a369aa3b379f20a99c1a7efd3f68169edabce2/onecodex-0.19.4.tar.gz from build tracker '/tmp/pip-build-tracker-w3z141nf' 2026-02-09T08:52:24,575 Created temporary directory: /tmp/pip-unpack-xzjc22qy 2026-02-09T08:52:24,575 Building wheels for collected packages: onecodex 2026-02-09T08:52:24,580 Created temporary directory: /tmp/pip-wheel-hh7e5t5d 2026-02-09T08:52:24,581 Destination directory: /tmp/pip-wheel-hh7e5t5d 2026-02-09T08:52:24,583 Building wheel for onecodex (pyproject.toml): started 2026-02-09T08:52:24,587 Running command Building wheel for onecodex (pyproject.toml) 2026-02-09T08:52:25,171 toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section 2026-02-09T08:52:25,223 /tmp/pip-build-env-0y38_jw4/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-02-09T08:52:25,224 !! 2026-02-09T08:52:25,225 ******************************************************************************** 2026-02-09T08:52:25,226 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-02-09T08:52:25,227 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-02-09T08:52:25,227 or your builds will no longer be supported. 2026-02-09T08:52:25,228 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-09T08:52:25,229 ******************************************************************************** 2026-02-09T08:52:25,230 !! 2026-02-09T08:52:25,231 corresp(dist, value, root_dir) 2026-02-09T08:52:25,298 /tmp/pip-build-env-0y38_jw4/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-02-09T08:52:25,299 !! 2026-02-09T08:52:25,300 ******************************************************************************** 2026-02-09T08:52:25,301 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-02-09T08:52:25,302 License :: OSI Approved :: MIT License 2026-02-09T08:52:25,303 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-09T08:52:25,304 ******************************************************************************** 2026-02-09T08:52:25,305 !! 2026-02-09T08:52:25,306 dist._finalize_license_expression() 2026-02-09T08:52:25,307 /tmp/pip-build-env-0y38_jw4/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-02-09T08:52:25,307 !! 2026-02-09T08:52:25,309 ******************************************************************************** 2026-02-09T08:52:25,309 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-02-09T08:52:25,311 License :: OSI Approved :: MIT License 2026-02-09T08:52:25,312 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-09T08:52:25,313 ******************************************************************************** 2026-02-09T08:52:25,314 !! 2026-02-09T08:52:25,315 self._finalize_license_expression() 2026-02-09T08:52:25,315 running bdist_wheel 2026-02-09T08:52:25,330 running build 2026-02-09T08:52:25,331 running build_py 2026-02-09T08:52:25,338 creating build/lib/docs 2026-02-09T08:52:25,340 copying docs/conf.py -> build/lib/docs 2026-02-09T08:52:25,343 creating build/lib/onecodex 2026-02-09T08:52:25,345 copying onecodex/version.py -> build/lib/onecodex 2026-02-09T08:52:25,347 copying onecodex/cli.py -> build/lib/onecodex 2026-02-09T08:52:25,349 copying onecodex/metadata_upload.py -> build/lib/onecodex 2026-02-09T08:52:25,351 copying onecodex/stats.py -> build/lib/onecodex 2026-02-09T08:52:25,354 copying onecodex/dataframes.py -> build/lib/onecodex 2026-02-09T08:52:25,357 copying onecodex/__init__.py -> build/lib/onecodex 2026-02-09T08:52:25,359 copying onecodex/utils.py -> build/lib/onecodex 2026-02-09T08:52:25,362 copying onecodex/exceptions.py -> build/lib/onecodex 2026-02-09T08:52:25,364 copying onecodex/input_helpers.py -> build/lib/onecodex 2026-02-09T08:52:25,367 copying onecodex/taxonomy.py -> build/lib/onecodex 2026-02-09T08:52:25,369 copying onecodex/distance.py -> build/lib/onecodex 2026-02-09T08:52:25,371 copying onecodex/auth.py -> build/lib/onecodex 2026-02-09T08:52:25,374 copying onecodex/analyses.py -> build/lib/onecodex 2026-02-09T08:52:25,376 copying onecodex/api.py -> build/lib/onecodex 2026-02-09T08:52:25,380 creating build/lib/onecodex/lib 2026-02-09T08:52:25,381 copying onecodex/lib/files.py -> build/lib/onecodex/lib 2026-02-09T08:52:25,383 copying onecodex/lib/__init__.py -> build/lib/onecodex/lib 2026-02-09T08:52:25,385 copying onecodex/lib/download.py -> build/lib/onecodex/lib 2026-02-09T08:52:25,387 copying onecodex/lib/helpers.py -> build/lib/onecodex/lib 2026-02-09T08:52:25,389 copying onecodex/lib/enums.py -> build/lib/onecodex/lib 2026-02-09T08:52:25,391 copying onecodex/lib/upload.py -> build/lib/onecodex/lib 2026-02-09T08:52:25,393 copying onecodex/lib/auth.py -> build/lib/onecodex/lib 2026-02-09T08:52:25,396 creating build/lib/onecodex/models 2026-02-09T08:52:25,397 copying onecodex/models/base.py -> build/lib/onecodex/models 2026-02-09T08:52:25,400 copying onecodex/models/__init__.py -> build/lib/onecodex/models 2026-02-09T08:52:25,402 copying onecodex/models/genome.py -> build/lib/onecodex/models 2026-02-09T08:52:25,404 copying onecodex/models/helpers.py -> build/lib/onecodex/models 2026-02-09T08:52:25,407 copying onecodex/models/collection.py -> build/lib/onecodex/models 2026-02-09T08:52:25,410 copying onecodex/models/misc.py -> build/lib/onecodex/models 2026-02-09T08:52:25,412 copying onecodex/models/sample.py -> build/lib/onecodex/models 2026-02-09T08:52:25,414 copying onecodex/models/analysis.py -> build/lib/onecodex/models 2026-02-09T08:52:25,417 creating build/lib/onecodex/scripts 2026-02-09T08:52:25,418 copying onecodex/scripts/subset_reads.py -> build/lib/onecodex/scripts 2026-02-09T08:52:25,421 copying onecodex/scripts/__init__.py -> build/lib/onecodex/scripts 2026-02-09T08:52:25,423 copying onecodex/scripts/export_functional_metric.py -> build/lib/onecodex/scripts 2026-02-09T08:52:25,425 copying onecodex/scripts/interleave.py -> build/lib/onecodex/scripts 2026-02-09T08:52:25,428 creating build/lib/onecodex/notebooks 2026-02-09T08:52:25,429 copying onecodex/notebooks/__init__.py -> build/lib/onecodex/notebooks 2026-02-09T08:52:25,430 copying onecodex/notebooks/exporters.py -> build/lib/onecodex/notebooks 2026-02-09T08:52:25,433 copying onecodex/notebooks/report.py -> build/lib/onecodex/notebooks 2026-02-09T08:52:25,436 creating build/lib/onecodex/viz 2026-02-09T08:52:25,437 copying onecodex/viz/__init__.py -> build/lib/onecodex/viz 2026-02-09T08:52:25,440 copying onecodex/viz/_pca.py -> build/lib/onecodex/viz 2026-02-09T08:52:25,443 copying onecodex/viz/_primitives.py -> build/lib/onecodex/viz 2026-02-09T08:52:25,445 copying onecodex/viz/_heatmap.py -> build/lib/onecodex/viz 2026-02-09T08:52:25,448 copying onecodex/viz/_metadata.py -> build/lib/onecodex/viz 2026-02-09T08:52:25,451 copying onecodex/viz/_distance.py -> build/lib/onecodex/viz 2026-02-09T08:52:25,453 copying onecodex/viz/_functional.py -> build/lib/onecodex/viz 2026-02-09T08:52:25,456 copying onecodex/viz/_bargraph.py -> build/lib/onecodex/viz 2026-02-09T08:52:25,459 creating build/lib/onecodex/models/schemas 2026-02-09T08:52:25,460 copying onecodex/models/schemas/base.py -> build/lib/onecodex/models/schemas 2026-02-09T08:52:25,462 copying onecodex/models/schemas/__init__.py -> build/lib/onecodex/models/schemas 2026-02-09T08:52:25,464 copying onecodex/models/schemas/genome.py -> build/lib/onecodex/models/schemas 2026-02-09T08:52:25,466 copying onecodex/models/schemas/types.py -> build/lib/onecodex/models/schemas 2026-02-09T08:52:25,468 copying onecodex/models/schemas/misc.py -> build/lib/onecodex/models/schemas 2026-02-09T08:52:25,470 copying onecodex/models/schemas/sample.py -> build/lib/onecodex/models/schemas 2026-02-09T08:52:25,472 copying onecodex/models/schemas/analysis.py -> build/lib/onecodex/models/schemas 2026-02-09T08:52:25,475 creating build/lib/onecodex/viz/_custom_plots 2026-02-09T08:52:25,476 copying onecodex/viz/_custom_plots/metadata.py -> build/lib/onecodex/viz/_custom_plots 2026-02-09T08:52:25,478 copying onecodex/viz/_custom_plots/__init__.py -> build/lib/onecodex/viz/_custom_plots 2026-02-09T08:52:25,480 copying onecodex/viz/_custom_plots/utils.py -> build/lib/onecodex/viz/_custom_plots 2026-02-09T08:52:25,482 copying onecodex/viz/_custom_plots/collection.py -> build/lib/onecodex/viz/_custom_plots 2026-02-09T08:52:25,485 copying onecodex/viz/_custom_plots/export.py -> build/lib/onecodex/viz/_custom_plots 2026-02-09T08:52:25,487 copying onecodex/viz/_custom_plots/enums.py -> build/lib/onecodex/viz/_custom_plots 2026-02-09T08:52:25,490 copying onecodex/viz/_custom_plots/models.py -> build/lib/onecodex/viz/_custom_plots 2026-02-09T08:52:25,491 running egg_info 2026-02-09T08:52:25,503 writing onecodex.egg-info/PKG-INFO 2026-02-09T08:52:25,512 writing dependency_links to onecodex.egg-info/dependency_links.txt 2026-02-09T08:52:25,514 writing entry points to onecodex.egg-info/entry_points.txt 2026-02-09T08:52:25,519 writing requirements to onecodex.egg-info/requires.txt 2026-02-09T08:52:25,520 writing top-level names to onecodex.egg-info/top_level.txt 2026-02-09T08:52:25,563 listing git files failed - pretending there aren't any 2026-02-09T08:52:25,569 reading manifest file 'onecodex.egg-info/SOURCES.txt' 2026-02-09T08:52:25,580 reading manifest template 'MANIFEST.in' 2026-02-09T08:52:25,583 warning: no files found matching 'pytest.ini' 2026-02-09T08:52:25,583 warning: no directories found matching 'licenses' 2026-02-09T08:52:25,584 adding license file 'LICENSE' 2026-02-09T08:52:25,592 writing manifest file 'onecodex.egg-info/SOURCES.txt' 2026-02-09T08:52:25,605 creating build/lib/notebook_examples 2026-02-09T08:52:25,606 copying notebook_examples/example.ipynb -> build/lib/notebook_examples 2026-02-09T08:52:25,609 copying notebook_examples/notebooks_demo.ipynb -> build/lib/notebook_examples 2026-02-09T08:52:25,612 copying docs/.gitignore -> build/lib/docs 2026-02-09T08:52:25,615 copying docs/Makefile -> build/lib/docs 2026-02-09T08:52:25,617 copying docs/index.rst -> build/lib/docs 2026-02-09T08:52:25,619 copying docs/models.rst -> build/lib/docs 2026-02-09T08:52:25,621 copying docs/notebooks.rst -> build/lib/docs 2026-02-09T08:52:25,624 copying docs/readme.md -> build/lib/docs 2026-02-09T08:52:25,626 copying docs/requirements.txt -> build/lib/docs 2026-02-09T08:52:25,628 copying docs/sample_collection.rst -> build/lib/docs 2026-02-09T08:52:25,630 copying docs/statistics.rst -> build/lib/docs 2026-02-09T08:52:25,633 copying docs/taxonomy.rst -> build/lib/docs 2026-02-09T08:52:25,635 copying docs/visualization.rst -> build/lib/docs 2026-02-09T08:52:25,637 creating build/lib/docs/_static 2026-02-09T08:52:25,638 copying docs/_static/one_codex_logo.png -> build/lib/docs/_static 2026-02-09T08:52:25,641 creating build/lib/docs/notebook_examples 2026-02-09T08:52:25,642 copying docs/notebook_examples/notebooks_demo.ipynb -> build/lib/docs/notebook_examples 2026-02-09T08:52:25,645 creating build/lib/onecodex/assets 2026-02-09T08:52:25,646 copying onecodex/assets/notebook_template.css -> build/lib/onecodex/assets 2026-02-09T08:52:25,649 copying onecodex/assets/notebook_template.scss -> build/lib/onecodex/assets 2026-02-09T08:52:25,651 copying onecodex/assets/notebook_template.tpl -> build/lib/onecodex/assets 2026-02-09T08:52:25,653 copying onecodex/assets/one_codex_logo.png -> build/lib/onecodex/assets 2026-02-09T08:52:25,656 creating build/lib/onecodex/assets/fonts 2026-02-09T08:52:25,657 copying onecodex/assets/fonts/FiraSans-Light.otf -> build/lib/onecodex/assets/fonts 2026-02-09T08:52:25,664 copying onecodex/assets/fonts/FiraSans-Light.woff2 -> build/lib/onecodex/assets/fonts 2026-02-09T08:52:25,669 copying onecodex/assets/fonts/FiraSans-LightItalic.otf -> build/lib/onecodex/assets/fonts 2026-02-09T08:52:25,678 copying onecodex/assets/fonts/FiraSans-LightItalic.woff2 -> build/lib/onecodex/assets/fonts 2026-02-09T08:52:25,683 copying onecodex/assets/fonts/FiraSans-Medium.otf -> build/lib/onecodex/assets/fonts 2026-02-09T08:52:25,693 copying onecodex/assets/fonts/FiraSans-Medium.woff2 -> build/lib/onecodex/assets/fonts 2026-02-09T08:52:25,699 copying onecodex/assets/fonts/FiraSans-MediumItalic.otf -> build/lib/onecodex/assets/fonts 2026-02-09T08:52:25,708 copying onecodex/assets/fonts/FiraSans-MediumItalic.woff2 -> build/lib/onecodex/assets/fonts 2026-02-09T08:52:25,714 copying onecodex/assets/fonts/FiraSans-Regular.otf -> build/lib/onecodex/assets/fonts 2026-02-09T08:52:25,723 copying onecodex/assets/fonts/FiraSans-Regular.woff2 -> build/lib/onecodex/assets/fonts 2026-02-09T08:52:25,729 copying onecodex/assets/fonts/FiraSans-RegularItalic.otf -> build/lib/onecodex/assets/fonts 2026-02-09T08:52:25,738 copying onecodex/assets/fonts/FiraSans-RegularItalic.woff2 -> build/lib/onecodex/assets/fonts 2026-02-09T08:52:25,744 copying onecodex/assets/fonts/FiraSans-SemiBold.otf -> build/lib/onecodex/assets/fonts 2026-02-09T08:52:25,754 copying onecodex/assets/fonts/FiraSans-SemiBold.woff2 -> build/lib/onecodex/assets/fonts 2026-02-09T08:52:25,760 copying onecodex/assets/fonts/FiraSans-SemiBoldItalic.otf -> build/lib/onecodex/assets/fonts 2026-02-09T08:52:25,769 copying onecodex/assets/fonts/FiraSans-SemiBoldItalic.woff2 -> build/lib/onecodex/assets/fonts 2026-02-09T08:52:25,775 copying onecodex/assets/fonts/FiraSansCondensed-Regular.otf -> build/lib/onecodex/assets/fonts 2026-02-09T08:52:25,780 copying onecodex/assets/fonts/FiraSansCondensed-RegularItalic.otf -> build/lib/onecodex/assets/fonts 2026-02-09T08:52:25,784 copying onecodex/assets/fonts/FiraSansCondensed-SemiBold.otf -> build/lib/onecodex/assets/fonts 2026-02-09T08:52:25,788 copying onecodex/assets/fonts/FiraSansCondensed-SemiboldItalic.otf -> build/lib/onecodex/assets/fonts 2026-02-09T08:52:25,809 installing to build/bdist.linux-armv7l/wheel 2026-02-09T08:52:25,810 running install 2026-02-09T08:52:25,833 running install_lib 2026-02-09T08:52:25,840 creating build/bdist.linux-armv7l/wheel 2026-02-09T08:52:25,842 creating build/bdist.linux-armv7l/wheel/notebook_examples 2026-02-09T08:52:25,843 copying build/lib/notebook_examples/notebooks_demo.ipynb -> build/bdist.linux-armv7l/wheel/./notebook_examples 2026-02-09T08:52:25,846 copying build/lib/notebook_examples/example.ipynb -> build/bdist.linux-armv7l/wheel/./notebook_examples 2026-02-09T08:52:25,849 creating build/bdist.linux-armv7l/wheel/docs 2026-02-09T08:52:25,851 creating build/bdist.linux-armv7l/wheel/docs/_static 2026-02-09T08:52:25,852 copying build/lib/docs/_static/one_codex_logo.png -> build/bdist.linux-armv7l/wheel/./docs/_static 2026-02-09T08:52:25,855 copying build/lib/docs/readme.md -> build/bdist.linux-armv7l/wheel/./docs 2026-02-09T08:52:25,857 copying build/lib/docs/sample_collection.rst -> build/bdist.linux-armv7l/wheel/./docs 2026-02-09T08:52:25,859 copying build/lib/docs/Makefile -> build/bdist.linux-armv7l/wheel/./docs 2026-02-09T08:52:25,861 copying build/lib/docs/index.rst -> build/bdist.linux-armv7l/wheel/./docs 2026-02-09T08:52:25,862 copying build/lib/docs/requirements.txt -> build/bdist.linux-armv7l/wheel/./docs 2026-02-09T08:52:25,864 copying build/lib/docs/models.rst -> build/bdist.linux-armv7l/wheel/./docs 2026-02-09T08:52:25,867 creating build/bdist.linux-armv7l/wheel/docs/notebook_examples 2026-02-09T08:52:25,868 copying build/lib/docs/notebook_examples/notebooks_demo.ipynb -> build/bdist.linux-armv7l/wheel/./docs/notebook_examples 2026-02-09T08:52:25,870 copying build/lib/docs/visualization.rst -> build/bdist.linux-armv7l/wheel/./docs 2026-02-09T08:52:25,872 copying build/lib/docs/notebooks.rst -> build/bdist.linux-armv7l/wheel/./docs 2026-02-09T08:52:25,874 copying build/lib/docs/statistics.rst -> build/bdist.linux-armv7l/wheel/./docs 2026-02-09T08:52:25,876 copying build/lib/docs/.gitignore -> build/bdist.linux-armv7l/wheel/./docs 2026-02-09T08:52:25,878 copying build/lib/docs/taxonomy.rst -> build/bdist.linux-armv7l/wheel/./docs 2026-02-09T08:52:25,880 copying build/lib/docs/conf.py -> build/bdist.linux-armv7l/wheel/./docs 2026-02-09T08:52:25,882 creating build/bdist.linux-armv7l/wheel/onecodex 2026-02-09T08:52:25,883 copying build/lib/onecodex/version.py -> build/bdist.linux-armv7l/wheel/./onecodex 2026-02-09T08:52:25,885 copying build/lib/onecodex/cli.py -> build/bdist.linux-armv7l/wheel/./onecodex 2026-02-09T08:52:25,888 copying build/lib/onecodex/metadata_upload.py -> build/bdist.linux-armv7l/wheel/./onecodex 2026-02-09T08:52:25,890 copying build/lib/onecodex/stats.py -> build/bdist.linux-armv7l/wheel/./onecodex 2026-02-09T08:52:25,894 creating build/bdist.linux-armv7l/wheel/onecodex/lib 2026-02-09T08:52:25,895 copying build/lib/onecodex/lib/files.py -> build/bdist.linux-armv7l/wheel/./onecodex/lib 2026-02-09T08:52:25,897 copying build/lib/onecodex/lib/__init__.py -> build/bdist.linux-armv7l/wheel/./onecodex/lib 2026-02-09T08:52:25,899 copying build/lib/onecodex/lib/download.py -> build/bdist.linux-armv7l/wheel/./onecodex/lib 2026-02-09T08:52:25,901 copying build/lib/onecodex/lib/helpers.py -> build/bdist.linux-armv7l/wheel/./onecodex/lib 2026-02-09T08:52:25,903 copying build/lib/onecodex/lib/enums.py -> build/bdist.linux-armv7l/wheel/./onecodex/lib 2026-02-09T08:52:25,905 copying build/lib/onecodex/lib/upload.py -> build/bdist.linux-armv7l/wheel/./onecodex/lib 2026-02-09T08:52:25,908 copying build/lib/onecodex/lib/auth.py -> build/bdist.linux-armv7l/wheel/./onecodex/lib 2026-02-09T08:52:25,910 copying build/lib/onecodex/dataframes.py -> build/bdist.linux-armv7l/wheel/./onecodex 2026-02-09T08:52:25,912 copying build/lib/onecodex/__init__.py -> build/bdist.linux-armv7l/wheel/./onecodex 2026-02-09T08:52:25,914 copying build/lib/onecodex/utils.py -> build/bdist.linux-armv7l/wheel/./onecodex 2026-02-09T08:52:25,917 copying build/lib/onecodex/exceptions.py -> build/bdist.linux-armv7l/wheel/./onecodex 2026-02-09T08:52:25,920 creating build/bdist.linux-armv7l/wheel/onecodex/assets 2026-02-09T08:52:25,921 copying build/lib/onecodex/assets/notebook_template.scss -> build/bdist.linux-armv7l/wheel/./onecodex/assets 2026-02-09T08:52:25,923 copying build/lib/onecodex/assets/one_codex_logo.png -> build/bdist.linux-armv7l/wheel/./onecodex/assets 2026-02-09T08:52:25,926 copying build/lib/onecodex/assets/notebook_template.tpl -> build/bdist.linux-armv7l/wheel/./onecodex/assets 2026-02-09T08:52:25,928 copying build/lib/onecodex/assets/notebook_template.css -> build/bdist.linux-armv7l/wheel/./onecodex/assets 2026-02-09T08:52:25,931 creating build/bdist.linux-armv7l/wheel/onecodex/assets/fonts 2026-02-09T08:52:25,932 copying build/lib/onecodex/assets/fonts/FiraSans-SemiBoldItalic.woff2 -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2026-02-09T08:52:25,937 copying build/lib/onecodex/assets/fonts/FiraSans-Regular.woff2 -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2026-02-09T08:52:25,942 copying build/lib/onecodex/assets/fonts/FiraSans-LightItalic.otf -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2026-02-09T08:52:25,951 copying build/lib/onecodex/assets/fonts/FiraSans-RegularItalic.woff2 -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2026-02-09T08:52:25,957 copying build/lib/onecodex/assets/fonts/FiraSansCondensed-SemiBold.otf -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2026-02-09T08:52:25,962 copying build/lib/onecodex/assets/fonts/FiraSans-MediumItalic.woff2 -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2026-02-09T08:52:25,967 copying build/lib/onecodex/assets/fonts/FiraSans-RegularItalic.otf -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2026-02-09T08:52:25,977 copying build/lib/onecodex/assets/fonts/FiraSansCondensed-SemiboldItalic.otf -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2026-02-09T08:52:25,984 copying build/lib/onecodex/assets/fonts/FiraSans-MediumItalic.otf -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2026-02-09T08:52:25,993 copying build/lib/onecodex/assets/fonts/FiraSans-SemiBold.otf -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2026-02-09T08:52:26,003 copying build/lib/onecodex/assets/fonts/FiraSansCondensed-Regular.otf -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2026-02-09T08:52:26,008 copying build/lib/onecodex/assets/fonts/FiraSans-Light.otf -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2026-02-09T08:52:26,015 copying build/lib/onecodex/assets/fonts/FiraSans-Regular.otf -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2026-02-09T08:52:26,023 copying build/lib/onecodex/assets/fonts/FiraSans-Light.woff2 -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2026-02-09T08:52:26,029 copying build/lib/onecodex/assets/fonts/FiraSans-SemiBold.woff2 -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2026-02-09T08:52:26,034 copying build/lib/onecodex/assets/fonts/FiraSans-Medium.woff2 -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2026-02-09T08:52:26,039 copying build/lib/onecodex/assets/fonts/FiraSans-SemiBoldItalic.otf -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2026-02-09T08:52:26,048 copying build/lib/onecodex/assets/fonts/FiraSansCondensed-RegularItalic.otf -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2026-02-09T08:52:26,053 copying build/lib/onecodex/assets/fonts/FiraSans-Medium.otf -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2026-02-09T08:52:26,062 copying build/lib/onecodex/assets/fonts/FiraSans-LightItalic.woff2 -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2026-02-09T08:52:26,068 creating build/bdist.linux-armv7l/wheel/onecodex/models 2026-02-09T08:52:26,069 copying build/lib/onecodex/models/base.py -> build/bdist.linux-armv7l/wheel/./onecodex/models 2026-02-09T08:52:26,072 copying build/lib/onecodex/models/__init__.py -> build/bdist.linux-armv7l/wheel/./onecodex/models 2026-02-09T08:52:26,074 copying build/lib/onecodex/models/genome.py -> build/bdist.linux-armv7l/wheel/./onecodex/models 2026-02-09T08:52:26,077 copying build/lib/onecodex/models/helpers.py -> build/bdist.linux-armv7l/wheel/./onecodex/models 2026-02-09T08:52:26,079 copying build/lib/onecodex/models/collection.py -> build/bdist.linux-armv7l/wheel/./onecodex/models 2026-02-09T08:52:26,082 copying build/lib/onecodex/models/misc.py -> build/bdist.linux-armv7l/wheel/./onecodex/models 2026-02-09T08:52:26,085 creating build/bdist.linux-armv7l/wheel/onecodex/models/schemas 2026-02-09T08:52:26,086 copying build/lib/onecodex/models/schemas/base.py -> build/bdist.linux-armv7l/wheel/./onecodex/models/schemas 2026-02-09T08:52:26,088 copying build/lib/onecodex/models/schemas/__init__.py -> build/bdist.linux-armv7l/wheel/./onecodex/models/schemas 2026-02-09T08:52:26,090 copying build/lib/onecodex/models/schemas/genome.py -> build/bdist.linux-armv7l/wheel/./onecodex/models/schemas 2026-02-09T08:52:26,092 copying build/lib/onecodex/models/schemas/types.py -> build/bdist.linux-armv7l/wheel/./onecodex/models/schemas 2026-02-09T08:52:26,094 copying build/lib/onecodex/models/schemas/misc.py -> build/bdist.linux-armv7l/wheel/./onecodex/models/schemas 2026-02-09T08:52:26,096 copying build/lib/onecodex/models/schemas/sample.py -> build/bdist.linux-armv7l/wheel/./onecodex/models/schemas 2026-02-09T08:52:26,098 copying build/lib/onecodex/models/schemas/analysis.py -> build/bdist.linux-armv7l/wheel/./onecodex/models/schemas 2026-02-09T08:52:26,100 copying build/lib/onecodex/models/sample.py -> build/bdist.linux-armv7l/wheel/./onecodex/models 2026-02-09T08:52:26,102 copying build/lib/onecodex/models/analysis.py -> build/bdist.linux-armv7l/wheel/./onecodex/models 2026-02-09T08:52:26,105 copying build/lib/onecodex/input_helpers.py -> build/bdist.linux-armv7l/wheel/./onecodex 2026-02-09T08:52:26,107 copying build/lib/onecodex/taxonomy.py -> build/bdist.linux-armv7l/wheel/./onecodex 2026-02-09T08:52:26,110 copying build/lib/onecodex/distance.py -> build/bdist.linux-armv7l/wheel/./onecodex 2026-02-09T08:52:26,112 creating build/bdist.linux-armv7l/wheel/onecodex/scripts 2026-02-09T08:52:26,114 copying build/lib/onecodex/scripts/subset_reads.py -> build/bdist.linux-armv7l/wheel/./onecodex/scripts 2026-02-09T08:52:26,116 copying build/lib/onecodex/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/./onecodex/scripts 2026-02-09T08:52:26,118 copying build/lib/onecodex/scripts/export_functional_metric.py -> build/bdist.linux-armv7l/wheel/./onecodex/scripts 2026-02-09T08:52:26,120 copying build/lib/onecodex/scripts/interleave.py -> build/bdist.linux-armv7l/wheel/./onecodex/scripts 2026-02-09T08:52:26,122 copying build/lib/onecodex/auth.py -> build/bdist.linux-armv7l/wheel/./onecodex 2026-02-09T08:52:26,125 creating build/bdist.linux-armv7l/wheel/onecodex/notebooks 2026-02-09T08:52:26,126 copying build/lib/onecodex/notebooks/__init__.py -> build/bdist.linux-armv7l/wheel/./onecodex/notebooks 2026-02-09T08:52:26,128 copying build/lib/onecodex/notebooks/exporters.py -> build/bdist.linux-armv7l/wheel/./onecodex/notebooks 2026-02-09T08:52:26,130 copying build/lib/onecodex/notebooks/report.py -> build/bdist.linux-armv7l/wheel/./onecodex/notebooks 2026-02-09T08:52:26,134 creating build/bdist.linux-armv7l/wheel/onecodex/viz 2026-02-09T08:52:26,135 creating build/bdist.linux-armv7l/wheel/onecodex/viz/_custom_plots 2026-02-09T08:52:26,137 copying build/lib/onecodex/viz/_custom_plots/metadata.py -> build/bdist.linux-armv7l/wheel/./onecodex/viz/_custom_plots 2026-02-09T08:52:26,139 copying build/lib/onecodex/viz/_custom_plots/__init__.py -> build/bdist.linux-armv7l/wheel/./onecodex/viz/_custom_plots 2026-02-09T08:52:26,141 copying build/lib/onecodex/viz/_custom_plots/utils.py -> build/bdist.linux-armv7l/wheel/./onecodex/viz/_custom_plots 2026-02-09T08:52:26,143 copying build/lib/onecodex/viz/_custom_plots/collection.py -> build/bdist.linux-armv7l/wheel/./onecodex/viz/_custom_plots 2026-02-09T08:52:26,146 copying build/lib/onecodex/viz/_custom_plots/export.py -> build/bdist.linux-armv7l/wheel/./onecodex/viz/_custom_plots 2026-02-09T08:52:26,149 copying build/lib/onecodex/viz/_custom_plots/enums.py -> build/bdist.linux-armv7l/wheel/./onecodex/viz/_custom_plots 2026-02-09T08:52:26,151 copying build/lib/onecodex/viz/_custom_plots/models.py -> build/bdist.linux-armv7l/wheel/./onecodex/viz/_custom_plots 2026-02-09T08:52:26,153 copying build/lib/onecodex/viz/__init__.py -> build/bdist.linux-armv7l/wheel/./onecodex/viz 2026-02-09T08:52:26,155 copying build/lib/onecodex/viz/_pca.py -> build/bdist.linux-armv7l/wheel/./onecodex/viz 2026-02-09T08:52:26,158 copying build/lib/onecodex/viz/_primitives.py -> build/bdist.linux-armv7l/wheel/./onecodex/viz 2026-02-09T08:52:26,160 copying build/lib/onecodex/viz/_heatmap.py -> build/bdist.linux-armv7l/wheel/./onecodex/viz 2026-02-09T08:52:26,163 copying build/lib/onecodex/viz/_metadata.py -> build/bdist.linux-armv7l/wheel/./onecodex/viz 2026-02-09T08:52:26,165 copying build/lib/onecodex/viz/_distance.py -> build/bdist.linux-armv7l/wheel/./onecodex/viz 2026-02-09T08:52:26,168 copying build/lib/onecodex/viz/_functional.py -> build/bdist.linux-armv7l/wheel/./onecodex/viz 2026-02-09T08:52:26,170 copying build/lib/onecodex/viz/_bargraph.py -> build/bdist.linux-armv7l/wheel/./onecodex/viz 2026-02-09T08:52:26,173 copying build/lib/onecodex/analyses.py -> build/bdist.linux-armv7l/wheel/./onecodex 2026-02-09T08:52:26,176 copying build/lib/onecodex/api.py -> build/bdist.linux-armv7l/wheel/./onecodex 2026-02-09T08:52:26,178 running install_egg_info 2026-02-09T08:52:26,184 Copying onecodex.egg-info to build/bdist.linux-armv7l/wheel/./onecodex-0.19.4-py3.11.egg-info 2026-02-09T08:52:26,200 running install_scripts 2026-02-09T08:52:26,214 creating build/bdist.linux-armv7l/wheel/onecodex-0.19.4.dist-info/WHEEL 2026-02-09T08:52:26,216 creating '/tmp/pip-wheel-hh7e5t5d/.tmp-8l8dt7iz/onecodex-0.19.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-02-09T08:52:26,219 adding 'docs/.gitignore' 2026-02-09T08:52:26,220 adding 'docs/Makefile' 2026-02-09T08:52:26,222 adding 'docs/conf.py' 2026-02-09T08:52:26,223 adding 'docs/index.rst' 2026-02-09T08:52:26,224 adding 'docs/models.rst' 2026-02-09T08:52:26,226 adding 'docs/notebooks.rst' 2026-02-09T08:52:26,227 adding 'docs/readme.md' 2026-02-09T08:52:26,228 adding 'docs/requirements.txt' 2026-02-09T08:52:26,229 adding 'docs/sample_collection.rst' 2026-02-09T08:52:26,230 adding 'docs/statistics.rst' 2026-02-09T08:52:26,232 adding 'docs/taxonomy.rst' 2026-02-09T08:52:26,233 adding 'docs/visualization.rst' 2026-02-09T08:52:26,237 adding 'docs/_static/one_codex_logo.png' 2026-02-09T08:52:26,239 adding 'docs/notebook_examples/notebooks_demo.ipynb' 2026-02-09T08:52:26,242 adding 'notebook_examples/example.ipynb' 2026-02-09T08:52:26,243 adding 'notebook_examples/notebooks_demo.ipynb' 2026-02-09T08:52:26,245 adding 'onecodex/__init__.py' 2026-02-09T08:52:26,249 adding 'onecodex/analyses.py' 2026-02-09T08:52:26,250 adding 'onecodex/api.py' 2026-02-09T08:52:26,252 adding 'onecodex/auth.py' 2026-02-09T08:52:26,254 adding 'onecodex/cli.py' 2026-02-09T08:52:26,256 adding 'onecodex/dataframes.py' 2026-02-09T08:52:26,258 adding 'onecodex/distance.py' 2026-02-09T08:52:26,260 adding 'onecodex/exceptions.py' 2026-02-09T08:52:26,262 adding 'onecodex/input_helpers.py' 2026-02-09T08:52:26,263 adding 'onecodex/metadata_upload.py' 2026-02-09T08:52:26,266 adding 'onecodex/stats.py' 2026-02-09T08:52:26,267 adding 'onecodex/taxonomy.py' 2026-02-09T08:52:26,270 adding 'onecodex/utils.py' 2026-02-09T08:52:26,271 adding 'onecodex/version.py' 2026-02-09T08:52:26,273 adding 'onecodex/assets/notebook_template.css' 2026-02-09T08:52:26,275 adding 'onecodex/assets/notebook_template.scss' 2026-02-09T08:52:26,276 adding 'onecodex/assets/notebook_template.tpl' 2026-02-09T08:52:26,279 adding 'onecodex/assets/one_codex_logo.png' 2026-02-09T08:52:26,323 adding 'onecodex/assets/fonts/FiraSans-Light.otf' 2026-02-09T08:52:26,339 adding 'onecodex/assets/fonts/FiraSans-Light.woff2' 2026-02-09T08:52:26,383 adding 'onecodex/assets/fonts/FiraSans-LightItalic.otf' 2026-02-09T08:52:26,400 adding 'onecodex/assets/fonts/FiraSans-LightItalic.woff2' 2026-02-09T08:52:26,466 adding 'onecodex/assets/fonts/FiraSans-Medium.otf' 2026-02-09T08:52:26,490 adding 'onecodex/assets/fonts/FiraSans-Medium.woff2' 2026-02-09T08:52:26,543 adding 'onecodex/assets/fonts/FiraSans-MediumItalic.otf' 2026-02-09T08:52:26,560 adding 'onecodex/assets/fonts/FiraSans-MediumItalic.woff2' 2026-02-09T08:52:26,602 adding 'onecodex/assets/fonts/FiraSans-Regular.otf' 2026-02-09T08:52:26,618 adding 'onecodex/assets/fonts/FiraSans-Regular.woff2' 2026-02-09T08:52:26,663 adding 'onecodex/assets/fonts/FiraSans-RegularItalic.otf' 2026-02-09T08:52:26,680 adding 'onecodex/assets/fonts/FiraSans-RegularItalic.woff2' 2026-02-09T08:52:26,725 adding 'onecodex/assets/fonts/FiraSans-SemiBold.otf' 2026-02-09T08:52:26,742 adding 'onecodex/assets/fonts/FiraSans-SemiBold.woff2' 2026-02-09T08:52:26,788 adding 'onecodex/assets/fonts/FiraSans-SemiBoldItalic.otf' 2026-02-09T08:52:26,805 adding 'onecodex/assets/fonts/FiraSans-SemiBoldItalic.woff2' 2026-02-09T08:52:26,817 adding 'onecodex/assets/fonts/FiraSansCondensed-Regular.otf' 2026-02-09T08:52:26,828 adding 'onecodex/assets/fonts/FiraSansCondensed-RegularItalic.otf' 2026-02-09T08:52:26,840 adding 'onecodex/assets/fonts/FiraSansCondensed-SemiBold.otf' 2026-02-09T08:52:26,851 adding 'onecodex/assets/fonts/FiraSansCondensed-SemiboldItalic.otf' 2026-02-09T08:52:26,853 adding 'onecodex/lib/__init__.py' 2026-02-09T08:52:26,854 adding 'onecodex/lib/auth.py' 2026-02-09T08:52:26,856 adding 'onecodex/lib/download.py' 2026-02-09T08:52:26,857 adding 'onecodex/lib/enums.py' 2026-02-09T08:52:26,859 adding 'onecodex/lib/files.py' 2026-02-09T08:52:26,860 adding 'onecodex/lib/helpers.py' 2026-02-09T08:52:26,862 adding 'onecodex/lib/upload.py' 2026-02-09T08:52:26,864 adding 'onecodex/models/__init__.py' 2026-02-09T08:52:26,866 adding 'onecodex/models/analysis.py' 2026-02-09T08:52:26,869 adding 'onecodex/models/base.py' 2026-02-09T08:52:26,873 adding 'onecodex/models/collection.py' 2026-02-09T08:52:26,874 adding 'onecodex/models/genome.py' 2026-02-09T08:52:26,876 adding 'onecodex/models/helpers.py' 2026-02-09T08:52:26,877 adding 'onecodex/models/misc.py' 2026-02-09T08:52:26,879 adding 'onecodex/models/sample.py' 2026-02-09T08:52:26,881 adding 'onecodex/models/schemas/__init__.py' 2026-02-09T08:52:26,883 adding 'onecodex/models/schemas/analysis.py' 2026-02-09T08:52:26,884 adding 'onecodex/models/schemas/base.py' 2026-02-09T08:52:26,885 adding 'onecodex/models/schemas/genome.py' 2026-02-09T08:52:26,887 adding 'onecodex/models/schemas/misc.py' 2026-02-09T08:52:26,888 adding 'onecodex/models/schemas/sample.py' 2026-02-09T08:52:26,889 adding 'onecodex/models/schemas/types.py' 2026-02-09T08:52:26,891 adding 'onecodex/notebooks/__init__.py' 2026-02-09T08:52:26,893 adding 'onecodex/notebooks/exporters.py' 2026-02-09T08:52:26,895 adding 'onecodex/notebooks/report.py' 2026-02-09T08:52:26,897 adding 'onecodex/scripts/__init__.py' 2026-02-09T08:52:26,899 adding 'onecodex/scripts/export_functional_metric.py' 2026-02-09T08:52:26,900 adding 'onecodex/scripts/interleave.py' 2026-02-09T08:52:26,902 adding 'onecodex/scripts/subset_reads.py' 2026-02-09T08:52:26,904 adding 'onecodex/viz/__init__.py' 2026-02-09T08:52:26,907 adding 'onecodex/viz/_bargraph.py' 2026-02-09T08:52:26,909 adding 'onecodex/viz/_distance.py' 2026-02-09T08:52:26,911 adding 'onecodex/viz/_functional.py' 2026-02-09T08:52:26,913 adding 'onecodex/viz/_heatmap.py' 2026-02-09T08:52:26,915 adding 'onecodex/viz/_metadata.py' 2026-02-09T08:52:26,917 adding 'onecodex/viz/_pca.py' 2026-02-09T08:52:26,919 adding 'onecodex/viz/_primitives.py' 2026-02-09T08:52:26,921 adding 'onecodex/viz/_custom_plots/__init__.py' 2026-02-09T08:52:26,923 adding 'onecodex/viz/_custom_plots/collection.py' 2026-02-09T08:52:26,925 adding 'onecodex/viz/_custom_plots/enums.py' 2026-02-09T08:52:26,926 adding 'onecodex/viz/_custom_plots/export.py' 2026-02-09T08:52:26,927 adding 'onecodex/viz/_custom_plots/metadata.py' 2026-02-09T08:52:26,929 adding 'onecodex/viz/_custom_plots/models.py' 2026-02-09T08:52:26,930 adding 'onecodex/viz/_custom_plots/utils.py' 2026-02-09T08:52:26,933 adding 'onecodex-0.19.4.dist-info/licenses/LICENSE' 2026-02-09T08:52:26,935 adding 'onecodex-0.19.4.dist-info/METADATA' 2026-02-09T08:52:26,937 adding 'onecodex-0.19.4.dist-info/WHEEL' 2026-02-09T08:52:26,938 adding 'onecodex-0.19.4.dist-info/entry_points.txt' 2026-02-09T08:52:26,939 adding 'onecodex-0.19.4.dist-info/top_level.txt' 2026-02-09T08:52:26,941 adding 'onecodex-0.19.4.dist-info/RECORD' 2026-02-09T08:52:26,973 removing build/bdist.linux-armv7l/wheel 2026-02-09T08:52:27,103 Building wheel for onecodex (pyproject.toml): finished with status 'done' 2026-02-09T08:52:27,166 Created wheel for onecodex: filename=onecodex-0.19.4-py3-none-any.whl size=2985864 sha256=28e3485c432b436e786a7ea3f8aa30aa0a7ecc69dd9e99b7131ce8493ee06b1e 2026-02-09T08:52:27,167 Stored in directory: /tmp/pip-ephem-wheel-cache-fzyjni4f/wheels/50/e7/82/2c0de6f26e9d4bf79ba357dfc96b7eaa1bd34fef258b949be1 2026-02-09T08:52:27,184 Successfully built onecodex 2026-02-09T08:52:27,253 Removed build tracker: '/tmp/pip-build-tracker-w3z141nf'