2026-02-09T10:32:54,913 Created temporary directory: /tmp/pip-ephem-wheel-cache-5fij9bst
2026-02-09T10:32:54,915 Created temporary directory: /tmp/pip-build-tracker-qiea43d4
2026-02-09T10:32:54,916 Initialized build tracking at /tmp/pip-build-tracker-qiea43d4
2026-02-09T10:32:54,916 Created build tracker: /tmp/pip-build-tracker-qiea43d4
2026-02-09T10:32:54,916 Entered build tracker: /tmp/pip-build-tracker-qiea43d4
2026-02-09T10:32:54,917 Created temporary directory: /tmp/pip-wheel-s6k_f6pg
2026-02-09T10:32:54,920 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-02-09T10:32:54,922 Created temporary directory: /tmp/pip-ephem-wheel-cache-h7jxsw6h
2026-02-09T10:32:54,944 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-02-09T10:32:54,948 2 location(s) to search for versions of streamd:
2026-02-09T10:32:54,948 * https://pypi.org/simple/streamd/
2026-02-09T10:32:54,948 * https://www.piwheels.org/simple/streamd/
2026-02-09T10:32:54,948 Fetching project page and analyzing links: https://pypi.org/simple/streamd/
2026-02-09T10:32:54,949 Getting page https://pypi.org/simple/streamd/
2026-02-09T10:32:54,951 Found index url https://pypi.org/simple
2026-02-09T10:32:55,163 Fetched page https://pypi.org/simple/streamd/ as application/vnd.pypi.simple.v1+json
2026-02-09T10:32:55,167   Found link https://files.pythonhosted.org/packages/8d/96/dd06d3cfc2b8f66a791d39120d88fc8a735168ebc8ff7e5638850a02bdb7/streamd-0.2.4.tar.gz (from https://pypi.org/simple/streamd/) (requires-python:>=3.6), version: 0.2.4
2026-02-09T10:32:55,168   Found link https://files.pythonhosted.org/packages/3c/33/e67ff9cffede4a4390020db9ba6f6823898845e3c8bba06b3b5ff85c9c70/streamd-0.2.5.tar.gz (from https://pypi.org/simple/streamd/) (requires-python:>=3.6), version: 0.2.5
2026-02-09T10:32:55,169   Skipping link: No binaries permitted for streamd: https://files.pythonhosted.org/packages/44/4e/ff6c13b62f53b4037ae42649009dce5a32b8ac0ad0eac5eec3df5cfbb557/streamd-0.2.6-py3-none-any.whl (from https://pypi.org/simple/streamd/) (requires-python:>=3.6)
2026-02-09T10:32:55,170   Found link https://files.pythonhosted.org/packages/72/53/dc71d524afdcfe34821f994e1affe793bbc44b984a73134cdea2ef641300/streamd-0.2.6.tar.gz (from https://pypi.org/simple/streamd/) (requires-python:>=3.6), version: 0.2.6
2026-02-09T10:32:55,171   Skipping link: No binaries permitted for streamd: https://files.pythonhosted.org/packages/4f/10/22028ea2fffc91921a979a6e5ac95b1f2b490e16abb5942b8ed978990ef7/streamd-0.2.7-py3-none-any.whl (from https://pypi.org/simple/streamd/) (requires-python:>=3.6)
2026-02-09T10:32:55,172   Found link https://files.pythonhosted.org/packages/0f/8e/371666f0b05ae834174fb94cf0f7bd3871c13f87754cb346c767547c4fd6/streamd-0.2.7.tar.gz (from https://pypi.org/simple/streamd/) (requires-python:>=3.6), version: 0.2.7
2026-02-09T10:32:55,172   Skipping link: No binaries permitted for streamd: https://files.pythonhosted.org/packages/c2/f5/430a5c7a0d58e87a183780df143edaea3c8926826fbe74855b67dc603ac8/streamd-0.2.8-py3-none-any.whl (from https://pypi.org/simple/streamd/) (requires-python:>=3.6)
2026-02-09T10:32:55,173   Found link https://files.pythonhosted.org/packages/19/63/5b4a036a2830d533730fefed020bcd0451328786b9d3de3e28b3b4f9ce5a/streamd-0.2.8.tar.gz (from https://pypi.org/simple/streamd/) (requires-python:>=3.6), version: 0.2.8
2026-02-09T10:32:55,174   Skipping link: No binaries permitted for streamd: https://files.pythonhosted.org/packages/0d/0e/56e8fb1a84d82e7f36c107fd07d780f29b3be32de62ab14af1cd1ebf030b/streamd-0.2.9-py3-none-any.whl (from https://pypi.org/simple/streamd/) (requires-python:>=3.6)
2026-02-09T10:32:55,175   Found link https://files.pythonhosted.org/packages/4b/a2/ba16665fe440ea86118621cdcd0510b4d700139c70b1b2597469cbc652c5/streamd-0.2.9.tar.gz (from https://pypi.org/simple/streamd/) (requires-python:>=3.6), version: 0.2.9
2026-02-09T10:32:55,176   Skipping link: No binaries permitted for streamd: https://files.pythonhosted.org/packages/53/88/c0feb4fb4b51196ef79a72380bb22ec9b2e2f0674f034e2520aba9d563eb/streamd-0.3-py3-none-any.whl (from https://pypi.org/simple/streamd/) (requires-python:>=3.6)
2026-02-09T10:32:55,177   Found link https://files.pythonhosted.org/packages/bf/ba/70cf2cfbe64e43048424f29dd196db07250247d0aae797fb5a083054e3fe/streamd-0.3.tar.gz (from https://pypi.org/simple/streamd/) (requires-python:>=3.6), version: 0.3
2026-02-09T10:32:55,178   Skipping link: No binaries permitted for streamd: https://files.pythonhosted.org/packages/d9/8c/3204260f6b7c1a12eda43b914f90ea2a79e896c072dc6e9230ea1beae77a/streamd-0.4-py3-none-any.whl (from https://pypi.org/simple/streamd/) (requires-python:>=3.6)
2026-02-09T10:32:55,179   Found link https://files.pythonhosted.org/packages/bd/90/bae892ae6c75b409a16281d5d0c5f3cb6d68711e349160cf6a277e6ac164/streamd-0.4.tar.gz (from https://pypi.org/simple/streamd/) (requires-python:>=3.6), version: 0.4
2026-02-09T10:32:55,179   Skipping link: No binaries permitted for streamd: https://files.pythonhosted.org/packages/19/22/781e35e924eb021c95fcfd3301f7305d1a3a10c2bd3ad5c34eb2c2ff80b5/streamd-0.4.1-py3-none-any.whl (from https://pypi.org/simple/streamd/) (requires-python:>=3.6)
2026-02-09T10:32:55,180   Found link https://files.pythonhosted.org/packages/4b/52/a7c8d8f9516c8776a9c75ca0438e955cbc0899e6c12279080735dd580832/streamd-0.4.1.tar.gz (from https://pypi.org/simple/streamd/) (requires-python:>=3.6), version: 0.4.1
2026-02-09T10:32:55,181 Fetching project page and analyzing links: https://www.piwheels.org/simple/streamd/
2026-02-09T10:32:55,181 Getting page https://www.piwheels.org/simple/streamd/
2026-02-09T10:32:55,183 Found index url https://www.piwheels.org/simple
2026-02-09T10:32:55,336 Fetched page https://www.piwheels.org/simple/streamd/ as text/html
2026-02-09T10:32:55,339   Skipping link: No binaries permitted for streamd: https://archive1.piwheels.org/simple/streamd/streamd-0.4-py3-none-any.whl#sha256=afe1d3fb1d27b1f0bd3458d12ac85ed21d9eea86ae3f2a022a0a77607c5e5bb9 (from https://www.piwheels.org/simple/streamd/) (requires-python:>=3.6)
2026-02-09T10:32:55,340   Skipping link: No binaries permitted for streamd: https://archive1.piwheels.org/simple/streamd/streamd-0.3-py3-none-any.whl#sha256=2bf8c22e8b7ef687a394e66f26ce21ad2982fa8c67b633298d4e929f198753f2 (from https://www.piwheels.org/simple/streamd/) (requires-python:>=3.6)
2026-02-09T10:32:55,341   Skipping link: No binaries permitted for streamd: https://archive1.piwheels.org/simple/streamd/streamd-0.2.9-py3-none-any.whl#sha256=2f5cf07ac089ea46fefb860397b396a55254233e996ad7572c92226ed1d2dfc4 (from https://www.piwheels.org/simple/streamd/) (requires-python:>=3.6)
2026-02-09T10:32:55,341   Skipping link: No binaries permitted for streamd: https://archive1.piwheels.org/simple/streamd/streamd-0.2.8-py3-none-any.whl#sha256=a342054bdd211653becf34ee37509df59f9e3cc54a5ff152aff02627d172df19 (from https://www.piwheels.org/simple/streamd/) (requires-python:>=3.6)
2026-02-09T10:32:55,342   Skipping link: No binaries permitted for streamd: https://archive1.piwheels.org/simple/streamd/streamd-0.2.7-py3-none-any.whl#sha256=b7a066f4959ff075f96580ed0af8feed31c39d59ca32f5706f79c6503d02d3f7 (from https://www.piwheels.org/simple/streamd/) (requires-python:>=3.6)
2026-02-09T10:32:55,342   Skipping link: No binaries permitted for streamd: https://archive1.piwheels.org/simple/streamd/streamd-0.2.6-py3-none-any.whl#sha256=f7888c07d9836354ded91c5e344bbb7b1d4552d11e37e32321cde4b50262a040 (from https://www.piwheels.org/simple/streamd/) (requires-python:>=3.6)
2026-02-09T10:32:55,343   Skipping link: No binaries permitted for streamd: https://archive1.piwheels.org/simple/streamd/streamd-0.2.5-py3-none-any.whl#sha256=23e92bac46dff5622fbf91e611c2277c5c87967d2a26965933d6f33e03b63818 (from https://www.piwheels.org/simple/streamd/) (requires-python:>=3.6)
2026-02-09T10:32:55,344   Skipping link: No binaries permitted for streamd: https://archive1.piwheels.org/simple/streamd/streamd-0.2.4-py3-none-any.whl#sha256=411cca8c59b01f0e7b8e18520e025a61e135cc2a6db0f374d2d5b80b171dbb2e (from https://www.piwheels.org/simple/streamd/) (requires-python:>=3.6)
2026-02-09T10:32:55,344 Skipping link: not a file: https://www.piwheels.org/simple/streamd/
2026-02-09T10:32:55,345 Skipping link: not a file: https://pypi.org/simple/streamd/
2026-02-09T10:32:55,364 Given no hashes to check 1 links for project 'streamd': discarding no candidates
2026-02-09T10:32:55,382 Collecting streamd==0.4.1
2026-02-09T10:32:55,384   Created temporary directory: /tmp/pip-unpack-dc68_dx2
2026-02-09T10:32:55,594   Downloading streamd-0.4.1.tar.gz (168 kB)
2026-02-09T10:32:55,827   Added streamd==0.4.1 from https://files.pythonhosted.org/packages/4b/52/a7c8d8f9516c8776a9c75ca0438e955cbc0899e6c12279080735dd580832/streamd-0.4.1.tar.gz to build tracker '/tmp/pip-build-tracker-qiea43d4'
2026-02-09T10:32:55,829   Running setup.py (path:/tmp/pip-wheel-s6k_f6pg/streamd_fd6b8dc57f1746cd86662317187d4600/setup.py) egg_info for package streamd
2026-02-09T10:32:55,830   Created temporary directory: /tmp/pip-pip-egg-info-5s_7_att
2026-02-09T10:32:55,830   Preparing metadata (setup.py): started
2026-02-09T10:32:55,831   Running command python setup.py egg_info
2026-02-09T10:32:56,756   running egg_info
2026-02-09T10:32:56,783   creating /tmp/pip-pip-egg-info-5s_7_att/streamd.egg-info
2026-02-09T10:32:56,784   writing /tmp/pip-pip-egg-info-5s_7_att/streamd.egg-info/PKG-INFO
2026-02-09T10:32:56,788   writing dependency_links to /tmp/pip-pip-egg-info-5s_7_att/streamd.egg-info/dependency_links.txt
2026-02-09T10:32:56,790   writing entry points to /tmp/pip-pip-egg-info-5s_7_att/streamd.egg-info/entry_points.txt
2026-02-09T10:32:56,792   writing requirements to /tmp/pip-pip-egg-info-5s_7_att/streamd.egg-info/requires.txt
2026-02-09T10:32:56,793   writing top-level names to /tmp/pip-pip-egg-info-5s_7_att/streamd.egg-info/top_level.txt
2026-02-09T10:32:56,794   writing manifest file '/tmp/pip-pip-egg-info-5s_7_att/streamd.egg-info/SOURCES.txt'
2026-02-09T10:32:56,891   reading manifest file '/tmp/pip-pip-egg-info-5s_7_att/streamd.egg-info/SOURCES.txt'
2026-02-09T10:32:56,893   reading manifest template 'MANIFEST.in'
2026-02-09T10:32:56,898   adding license file 'LICENSE.txt'
2026-02-09T10:32:56,902   writing manifest file '/tmp/pip-pip-egg-info-5s_7_att/streamd.egg-info/SOURCES.txt'
2026-02-09T10:32:57,010   Preparing metadata (setup.py): finished with status 'done'
2026-02-09T10:32:57,013   Source in /tmp/pip-wheel-s6k_f6pg/streamd_fd6b8dc57f1746cd86662317187d4600 has version 0.4.1, which satisfies requirement streamd==0.4.1 from https://files.pythonhosted.org/packages/4b/52/a7c8d8f9516c8776a9c75ca0438e955cbc0899e6c12279080735dd580832/streamd-0.4.1.tar.gz
2026-02-09T10:32:57,015   Removed streamd==0.4.1 from https://files.pythonhosted.org/packages/4b/52/a7c8d8f9516c8776a9c75ca0438e955cbc0899e6c12279080735dd580832/streamd-0.4.1.tar.gz from build tracker '/tmp/pip-build-tracker-qiea43d4'
2026-02-09T10:32:57,020 Created temporary directory: /tmp/pip-unpack-5ixg7nmc
2026-02-09T10:32:57,021 Building wheels for collected packages: streamd
2026-02-09T10:32:57,025   Created temporary directory: /tmp/pip-wheel-v3ic9hbk
2026-02-09T10:32:57,026   Building wheel for streamd (setup.py): started
2026-02-09T10:32:57,027   Destination directory: /tmp/pip-wheel-v3ic9hbk
2026-02-09T10:32:57,027   Running command python setup.py bdist_wheel
2026-02-09T10:32:57,880   running bdist_wheel
2026-02-09T10:32:58,014   running build
2026-02-09T10:32:58,015   running build_py
2026-02-09T10:32:58,049   creating build/lib/streamd
2026-02-09T10:32:58,051   copying streamd/run_md.py -> build/lib/streamd
2026-02-09T10:32:58,055   copying streamd/run_gbsa.py -> build/lib/streamd
2026-02-09T10:32:58,059   copying streamd/__init__.py -> build/lib/streamd
2026-02-09T10:32:58,062   creating build/lib/streamd/tests
2026-02-09T10:32:58,063   copying streamd/tests/preparation_test.py -> build/lib/streamd/tests
2026-02-09T10:32:58,066   copying streamd/tests/plot_build_test.py -> build/lib/streamd/tests
2026-02-09T10:32:58,068   copying streamd/tests/conftest.py -> build/lib/streamd/tests
2026-02-09T10:32:58,072   copying streamd/tests/gbsa_test.py -> build/lib/streamd/tests
2026-02-09T10:32:58,074   copying streamd/tests/config_cli_test.py -> build/lib/streamd/tests
2026-02-09T10:32:58,076   copying streamd/tests/analysis_test.py -> build/lib/streamd/tests
2026-02-09T10:32:58,079   copying streamd/tests/import_test.py -> build/lib/streamd/tests
2026-02-09T10:32:58,081   copying streamd/tests/prolif_test.py -> build/lib/streamd/tests
2026-02-09T10:32:58,083   copying streamd/tests/md_test.py -> build/lib/streamd/tests
2026-02-09T10:32:58,085   copying streamd/tests/__init__.py -> build/lib/streamd/tests
2026-02-09T10:32:58,087   copying streamd/tests/system_name_test.py -> build/lib/streamd/tests
2026-02-09T10:32:58,089   copying streamd/tests/decomp_dat_parser_test.py -> build/lib/streamd/tests
2026-02-09T10:32:58,092   creating build/lib/streamd/mcpbpy_md
2026-02-09T10:32:58,093   copying streamd/mcpbpy_md/mcbpy_md.py -> build/lib/streamd/mcpbpy_md
2026-02-09T10:32:58,095   copying streamd/mcpbpy_md/__init__.py -> build/lib/streamd/mcpbpy_md
2026-02-09T10:32:58,098   creating build/lib/streamd/scripts
2026-02-09T10:32:58,099   copying streamd/scripts/prepare_Gaussian_input.py -> build/lib/streamd/scripts
2026-02-09T10:32:58,101   copying streamd/scripts/getcharge.py -> build/lib/streamd/scripts
2026-02-09T10:32:58,103   copying streamd/scripts/pmed_amb2gmx.py -> build/lib/streamd/scripts
2026-02-09T10:32:58,105   copying streamd/scripts/pdb2mol.py -> build/lib/streamd/scripts
2026-02-09T10:32:58,107   copying streamd/scripts/mol2_fix_coordsbonds.py -> build/lib/streamd/scripts
2026-02-09T10:32:58,109   copying streamd/scripts/__init__.py -> build/lib/streamd/scripts
2026-02-09T10:32:58,111   creating build/lib/streamd/prolif
2026-02-09T10:32:58,113   copying streamd/prolif/prolif2png.py -> build/lib/streamd/prolif
2026-02-09T10:32:58,115   copying streamd/prolif/prolif_frame_map.py -> build/lib/streamd/prolif
2026-02-09T10:32:58,118   copying streamd/prolif/run_prolif.py -> build/lib/streamd/prolif
2026-02-09T10:32:58,120   copying streamd/prolif/__init__.py -> build/lib/streamd/prolif
2026-02-09T10:32:58,123   creating build/lib/streamd/analysis
2026-02-09T10:32:58,124   copying streamd/analysis/run_analysis.py -> build/lib/streamd/analysis
2026-02-09T10:32:58,126   copying streamd/analysis/xvg2png.py -> build/lib/streamd/analysis
2026-02-09T10:32:58,129   copying streamd/analysis/md_system_analysis.py -> build/lib/streamd/analysis
2026-02-09T10:32:58,131   copying streamd/analysis/plot_build.py -> build/lib/streamd/analysis
2026-02-09T10:32:58,134   copying streamd/analysis/__init__.py -> build/lib/streamd/analysis
2026-02-09T10:32:58,136   creating build/lib/streamd/preparation
2026-02-09T10:32:58,137   copying streamd/preparation/nonstandard_solvent_preparation.py -> build/lib/streamd/preparation
2026-02-09T10:32:58,139   copying streamd/preparation/md_files_preparation.py -> build/lib/streamd/preparation
2026-02-09T10:32:58,142   copying streamd/preparation/complex_preparation.py -> build/lib/streamd/preparation
2026-02-09T10:32:58,145   copying streamd/preparation/mcpbpy_preparation.py -> build/lib/streamd/preparation
2026-02-09T10:32:58,147   copying streamd/preparation/ligand_preparation.py -> build/lib/streamd/preparation
2026-02-09T10:32:58,150   copying streamd/preparation/__init__.py -> build/lib/streamd/preparation
2026-02-09T10:32:58,152   creating build/lib/streamd/utils
2026-02-09T10:32:58,153   copying streamd/utils/dask_init.py -> build/lib/streamd/utils
2026-02-09T10:32:58,156   copying streamd/utils/utils.py -> build/lib/streamd/utils
2026-02-09T10:32:58,159   copying streamd/utils/__init__.py -> build/lib/streamd/utils
2026-02-09T10:32:58,161   running egg_info
2026-02-09T10:32:58,190   writing streamd.egg-info/PKG-INFO
2026-02-09T10:32:58,193   writing dependency_links to streamd.egg-info/dependency_links.txt
2026-02-09T10:32:58,195   writing entry points to streamd.egg-info/entry_points.txt
2026-02-09T10:32:58,198   writing requirements to streamd.egg-info/requires.txt
2026-02-09T10:32:58,199   writing top-level names to streamd.egg-info/top_level.txt
2026-02-09T10:32:58,236   reading manifest file 'streamd.egg-info/SOURCES.txt'
2026-02-09T10:32:58,242   reading manifest template 'MANIFEST.in'
2026-02-09T10:32:58,246   adding license file 'LICENSE.txt'
2026-02-09T10:32:58,251   writing manifest file 'streamd.egg-info/SOURCES.txt'
2026-02-09T10:32:58,253   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'streamd.example' is absent from the `packages` configuration.
2026-02-09T10:32:58,254   !!

2026-02-09T10:32:58,255           ********************************************************************************
2026-02-09T10:32:58,255           ############################
2026-02-09T10:32:58,256           # Package would be ignored #
2026-02-09T10:32:58,256           ############################
2026-02-09T10:32:58,257           Python recognizes 'streamd.example' as an importable package[^1],
2026-02-09T10:32:58,257           but it is absent from setuptools' `packages` configuration.

2026-02-09T10:32:58,258           This leads to an ambiguous overall configuration. If you want to distribute this
2026-02-09T10:32:58,259           package, please make sure that 'streamd.example' is explicitly added
2026-02-09T10:32:58,259           to the `packages` configuration field.

2026-02-09T10:32:58,260           Alternatively, you can also rely on setuptools' discovery methods
2026-02-09T10:32:58,261           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-02-09T10:32:58,261           instead of `find_packages(...)`/`find:`).

2026-02-09T10:32:58,262           You can read more about "package discovery" on setuptools documentation page:

2026-02-09T10:32:58,263           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-02-09T10:32:58,265           If you don't want 'streamd.example' to be distributed and are
2026-02-09T10:32:58,265           already explicitly excluding 'streamd.example' via
2026-02-09T10:32:58,266           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-02-09T10:32:58,266           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-02-09T10:32:58,267           combination with a more fine grained `package-data` configuration.

2026-02-09T10:32:58,268           You can read more about "package data files" on setuptools documentation page:

2026-02-09T10:32:58,269           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-02-09T10:32:58,271           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-02-09T10:32:58,271                 even if it does not contain any `.py` files.
2026-02-09T10:32:58,272                 On the other hand, currently there is no concept of package data
2026-02-09T10:32:58,272                 directory, all directories are treated like packages.
2026-02-09T10:32:58,273           ********************************************************************************

2026-02-09T10:32:58,274   !!
2026-02-09T10:32:58,274     check.warn(importable)
2026-02-09T10:32:58,275   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'streamd.scripts.com' is absent from the `packages` configuration.
2026-02-09T10:32:58,275   !!

2026-02-09T10:32:58,276           ********************************************************************************
2026-02-09T10:32:58,277           ############################
2026-02-09T10:32:58,278           # Package would be ignored #
2026-02-09T10:32:58,278           ############################
2026-02-09T10:32:58,279           Python recognizes 'streamd.scripts.com' as an importable package[^1],
2026-02-09T10:32:58,279           but it is absent from setuptools' `packages` configuration.

2026-02-09T10:32:58,281           This leads to an ambiguous overall configuration. If you want to distribute this
2026-02-09T10:32:58,282           package, please make sure that 'streamd.scripts.com' is explicitly added
2026-02-09T10:32:58,282           to the `packages` configuration field.

2026-02-09T10:32:58,283           Alternatively, you can also rely on setuptools' discovery methods
2026-02-09T10:32:58,284           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-02-09T10:32:58,284           instead of `find_packages(...)`/`find:`).

2026-02-09T10:32:58,285           You can read more about "package discovery" on setuptools documentation page:

2026-02-09T10:32:58,286           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-02-09T10:32:58,287           If you don't want 'streamd.scripts.com' to be distributed and are
2026-02-09T10:32:58,288           already explicitly excluding 'streamd.scripts.com' via
2026-02-09T10:32:58,288           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-02-09T10:32:58,289           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-02-09T10:32:58,290           combination with a more fine grained `package-data` configuration.

2026-02-09T10:32:58,291           You can read more about "package data files" on setuptools documentation page:

2026-02-09T10:32:58,292           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-02-09T10:32:58,293           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-02-09T10:32:58,294                 even if it does not contain any `.py` files.
2026-02-09T10:32:58,295                 On the other hand, currently there is no concept of package data
2026-02-09T10:32:58,295                 directory, all directories are treated like packages.
2026-02-09T10:32:58,296           ********************************************************************************

2026-02-09T10:32:58,302   !!
2026-02-09T10:32:58,302     check.warn(importable)
2026-02-09T10:32:58,303   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'streamd.scripts.gbsa' is absent from the `packages` configuration.
2026-02-09T10:32:58,304   !!

2026-02-09T10:32:58,305           ********************************************************************************
2026-02-09T10:32:58,306           ############################
2026-02-09T10:32:58,307           # Package would be ignored #
2026-02-09T10:32:58,308           ############################
2026-02-09T10:32:58,309           Python recognizes 'streamd.scripts.gbsa' as an importable package[^1],
2026-02-09T10:32:58,309           but it is absent from setuptools' `packages` configuration.

2026-02-09T10:32:58,310           This leads to an ambiguous overall configuration. If you want to distribute this
2026-02-09T10:32:58,311           package, please make sure that 'streamd.scripts.gbsa' is explicitly added
2026-02-09T10:32:58,311           to the `packages` configuration field.

2026-02-09T10:32:58,312           Alternatively, you can also rely on setuptools' discovery methods
2026-02-09T10:32:58,313           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-02-09T10:32:58,313           instead of `find_packages(...)`/`find:`).

2026-02-09T10:32:58,314           You can read more about "package discovery" on setuptools documentation page:

2026-02-09T10:32:58,315           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-02-09T10:32:58,316           If you don't want 'streamd.scripts.gbsa' to be distributed and are
2026-02-09T10:32:58,317           already explicitly excluding 'streamd.scripts.gbsa' via
2026-02-09T10:32:58,317           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-02-09T10:32:58,318           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-02-09T10:32:58,318           combination with a more fine grained `package-data` configuration.

2026-02-09T10:32:58,320           You can read more about "package data files" on setuptools documentation page:

2026-02-09T10:32:58,320           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-02-09T10:32:58,322           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-02-09T10:32:58,322                 even if it does not contain any `.py` files.
2026-02-09T10:32:58,323                 On the other hand, currently there is no concept of package data
2026-02-09T10:32:58,323                 directory, all directories are treated like packages.
2026-02-09T10:32:58,324           ********************************************************************************

2026-02-09T10:32:58,324   !!
2026-02-09T10:32:58,325     check.warn(importable)
2026-02-09T10:32:58,325   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'streamd.scripts.mcpbpy_scripts' is absent from the `packages` configuration.
2026-02-09T10:32:58,326   !!

2026-02-09T10:32:58,327           ********************************************************************************
2026-02-09T10:32:58,327           ############################
2026-02-09T10:32:58,328           # Package would be ignored #
2026-02-09T10:32:58,328           ############################
2026-02-09T10:32:58,328           Python recognizes 'streamd.scripts.mcpbpy_scripts' as an importable package[^1],
2026-02-09T10:32:58,329           but it is absent from setuptools' `packages` configuration.

2026-02-09T10:32:58,330           This leads to an ambiguous overall configuration. If you want to distribute this
2026-02-09T10:32:58,330           package, please make sure that 'streamd.scripts.mcpbpy_scripts' is explicitly added
2026-02-09T10:32:58,331           to the `packages` configuration field.

2026-02-09T10:32:58,332           Alternatively, you can also rely on setuptools' discovery methods
2026-02-09T10:32:58,332           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-02-09T10:32:58,333           instead of `find_packages(...)`/`find:`).

2026-02-09T10:32:58,334           You can read more about "package discovery" on setuptools documentation page:

2026-02-09T10:32:58,334           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-02-09T10:32:58,335           If you don't want 'streamd.scripts.mcpbpy_scripts' to be distributed and are
2026-02-09T10:32:58,336           already explicitly excluding 'streamd.scripts.mcpbpy_scripts' via
2026-02-09T10:32:58,336           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-02-09T10:32:58,337           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-02-09T10:32:58,337           combination with a more fine grained `package-data` configuration.

2026-02-09T10:32:58,339           You can read more about "package data files" on setuptools documentation page:

2026-02-09T10:32:58,340           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-02-09T10:32:58,341           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-02-09T10:32:58,342                 even if it does not contain any `.py` files.
2026-02-09T10:32:58,342                 On the other hand, currently there is no concept of package data
2026-02-09T10:32:58,343                 directory, all directories are treated like packages.
2026-02-09T10:32:58,343           ********************************************************************************

2026-02-09T10:32:58,344   !!
2026-02-09T10:32:58,345     check.warn(importable)
2026-02-09T10:32:58,346   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'streamd.scripts.mdp' is absent from the `packages` configuration.
2026-02-09T10:32:58,346   !!

2026-02-09T10:32:58,347           ********************************************************************************
2026-02-09T10:32:58,348           ############################
2026-02-09T10:32:58,348           # Package would be ignored #
2026-02-09T10:32:58,349           ############################
2026-02-09T10:32:58,349           Python recognizes 'streamd.scripts.mdp' as an importable package[^1],
2026-02-09T10:32:58,350           but it is absent from setuptools' `packages` configuration.

2026-02-09T10:32:58,350           This leads to an ambiguous overall configuration. If you want to distribute this
2026-02-09T10:32:58,351           package, please make sure that 'streamd.scripts.mdp' is explicitly added
2026-02-09T10:32:58,351           to the `packages` configuration field.

2026-02-09T10:32:58,352           Alternatively, you can also rely on setuptools' discovery methods
2026-02-09T10:32:58,352           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-02-09T10:32:58,353           instead of `find_packages(...)`/`find:`).

2026-02-09T10:32:58,354           You can read more about "package discovery" on setuptools documentation page:

2026-02-09T10:32:58,354           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-02-09T10:32:58,355           If you don't want 'streamd.scripts.mdp' to be distributed and are
2026-02-09T10:32:58,356           already explicitly excluding 'streamd.scripts.mdp' via
2026-02-09T10:32:58,356           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-02-09T10:32:58,357           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-02-09T10:32:58,357           combination with a more fine grained `package-data` configuration.

2026-02-09T10:32:58,358           You can read more about "package data files" on setuptools documentation page:

2026-02-09T10:32:58,359           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-02-09T10:32:58,360           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-02-09T10:32:58,361                 even if it does not contain any `.py` files.
2026-02-09T10:32:58,361                 On the other hand, currently there is no concept of package data
2026-02-09T10:32:58,362                 directory, all directories are treated like packages.
2026-02-09T10:32:58,362           ********************************************************************************

2026-02-09T10:32:58,363   !!
2026-02-09T10:32:58,364     check.warn(importable)
2026-02-09T10:32:58,364   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'streamd.scripts.script_sh' is absent from the `packages` configuration.
2026-02-09T10:32:58,365   !!

2026-02-09T10:32:58,366           ********************************************************************************
2026-02-09T10:32:58,366           ############################
2026-02-09T10:32:58,367           # Package would be ignored #
2026-02-09T10:32:58,368           ############################
2026-02-09T10:32:58,368           Python recognizes 'streamd.scripts.script_sh' as an importable package[^1],
2026-02-09T10:32:58,369           but it is absent from setuptools' `packages` configuration.

2026-02-09T10:32:58,370           This leads to an ambiguous overall configuration. If you want to distribute this
2026-02-09T10:32:58,370           package, please make sure that 'streamd.scripts.script_sh' is explicitly added
2026-02-09T10:32:58,371           to the `packages` configuration field.

2026-02-09T10:32:58,372           Alternatively, you can also rely on setuptools' discovery methods
2026-02-09T10:32:58,372           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-02-09T10:32:58,373           instead of `find_packages(...)`/`find:`).

2026-02-09T10:32:58,374           You can read more about "package discovery" on setuptools documentation page:

2026-02-09T10:32:58,375           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-02-09T10:32:58,376           If you don't want 'streamd.scripts.script_sh' to be distributed and are
2026-02-09T10:32:58,377           already explicitly excluding 'streamd.scripts.script_sh' via
2026-02-09T10:32:58,378           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-02-09T10:32:58,378           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-02-09T10:32:58,379           combination with a more fine grained `package-data` configuration.

2026-02-09T10:32:58,379           You can read more about "package data files" on setuptools documentation page:

2026-02-09T10:32:58,380           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-02-09T10:32:58,381           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-02-09T10:32:58,382                 even if it does not contain any `.py` files.
2026-02-09T10:32:58,382                 On the other hand, currently there is no concept of package data
2026-02-09T10:32:58,383                 directory, all directories are treated like packages.
2026-02-09T10:32:58,383           ********************************************************************************

2026-02-09T10:32:58,384   !!
2026-02-09T10:32:58,384     check.warn(importable)
2026-02-09T10:32:58,385   creating build/lib/streamd/example
2026-02-09T10:32:58,385   copying streamd/example/instructions.txt -> build/lib/streamd/example
2026-02-09T10:32:58,386   copying streamd/example/ligand.mol -> build/lib/streamd/example
2026-02-09T10:32:58,386   copying streamd/example/protein_HIS.pdb -> build/lib/streamd/example
2026-02-09T10:32:58,387   copying streamd/scripts/tleap.in -> build/lib/streamd/scripts
2026-02-09T10:32:58,387   creating build/lib/streamd/scripts/com
2026-02-09T10:32:58,388   copying streamd/scripts/com/1.com -> build/lib/streamd/scripts/com
2026-02-09T10:32:58,388   copying streamd/scripts/com/2.com -> build/lib/streamd/scripts/com
2026-02-09T10:32:58,389   copying streamd/scripts/com/3.com -> build/lib/streamd/scripts/com
2026-02-09T10:32:58,389   creating build/lib/streamd/scripts/gbsa
2026-02-09T10:32:58,390   copying streamd/scripts/gbsa/mmpbsa.in -> build/lib/streamd/scripts/gbsa
2026-02-09T10:32:58,390   creating build/lib/streamd/scripts/mcpbpy_scripts
2026-02-09T10:32:58,391   copying streamd/scripts/mcpbpy_scripts/protein.in -> build/lib/streamd/scripts/mcpbpy_scripts
2026-02-09T10:32:58,392   creating build/lib/streamd/scripts/mdp
2026-02-09T10:32:58,392   copying streamd/scripts/mdp/ions.mdp -> build/lib/streamd/scripts/mdp
2026-02-09T10:32:58,392   copying streamd/scripts/mdp/md.mdp -> build/lib/streamd/scripts/mdp
2026-02-09T10:32:58,393   copying streamd/scripts/mdp/minim.mdp -> build/lib/streamd/scripts/mdp
2026-02-09T10:32:58,394   copying streamd/scripts/mdp/npt.mdp -> build/lib/streamd/scripts/mdp
2026-02-09T10:32:58,394   copying streamd/scripts/mdp/nvt.mdp -> build/lib/streamd/scripts/mdp
2026-02-09T10:32:58,395   creating build/lib/streamd/scripts/script_sh
2026-02-09T10:32:58,395   copying streamd/scripts/script_sh/continue_md.sh -> build/lib/streamd/scripts/script_sh
2026-02-09T10:32:58,396   copying streamd/scripts/script_sh/equlibration.sh -> build/lib/streamd/scripts/script_sh
2026-02-09T10:32:58,396   copying streamd/scripts/script_sh/ligand_mol2prep.sh -> build/lib/streamd/scripts/script_sh
2026-02-09T10:32:58,397   copying streamd/scripts/script_sh/ligand_mol2prep_by_gaussian.sh -> build/lib/streamd/scripts/script_sh
2026-02-09T10:32:58,397   copying streamd/scripts/script_sh/ligand_prep.sh -> build/lib/streamd/scripts/script_sh
2026-02-09T10:32:58,398   copying streamd/scripts/script_sh/md.sh -> build/lib/streamd/scripts/script_sh
2026-02-09T10:32:58,398   copying streamd/scripts/script_sh/md_analysis.sh -> build/lib/streamd/scripts/script_sh
2026-02-09T10:32:58,399   copying streamd/scripts/script_sh/md_ligand_analysis.sh -> build/lib/streamd/scripts/script_sh
2026-02-09T10:32:58,400   copying streamd/scripts/script_sh/solv_ions.sh -> build/lib/streamd/scripts/script_sh
2026-02-09T10:32:58,400   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2026-02-09T10:32:58,401   !!

2026-02-09T10:32:58,402           ********************************************************************************
2026-02-09T10:32:58,402           Please avoid running ``setup.py`` directly.
2026-02-09T10:32:58,403           Instead, use pypa/build, pypa/installer or other
2026-02-09T10:32:58,403           standards-based tools.

2026-02-09T10:32:58,404           This deprecation is overdue, please update your project and remove deprecated
2026-02-09T10:32:58,405           calls to avoid build errors in the future.

2026-02-09T10:32:58,405           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2026-02-09T10:32:58,406           ********************************************************************************

2026-02-09T10:32:58,407   !!
2026-02-09T10:32:58,407     self.initialize_options()
2026-02-09T10:32:58,427   installing to build/bdist.linux-armv7l/wheel
2026-02-09T10:32:58,428   running install
2026-02-09T10:32:58,451   running install_lib
2026-02-09T10:32:58,478   creating build/bdist.linux-armv7l/wheel
2026-02-09T10:32:58,480   creating build/bdist.linux-armv7l/wheel/streamd
2026-02-09T10:32:58,482   creating build/bdist.linux-armv7l/wheel/streamd/tests
2026-02-09T10:32:58,483   copying build/lib/streamd/tests/preparation_test.py -> build/bdist.linux-armv7l/wheel/./streamd/tests
2026-02-09T10:32:58,485   copying build/lib/streamd/tests/plot_build_test.py -> build/bdist.linux-armv7l/wheel/./streamd/tests
2026-02-09T10:32:58,487   copying build/lib/streamd/tests/conftest.py -> build/bdist.linux-armv7l/wheel/./streamd/tests
2026-02-09T10:32:58,490   copying build/lib/streamd/tests/gbsa_test.py -> build/bdist.linux-armv7l/wheel/./streamd/tests
2026-02-09T10:32:58,492   copying build/lib/streamd/tests/config_cli_test.py -> build/bdist.linux-armv7l/wheel/./streamd/tests
2026-02-09T10:32:58,494   copying build/lib/streamd/tests/analysis_test.py -> build/bdist.linux-armv7l/wheel/./streamd/tests
2026-02-09T10:32:58,496   copying build/lib/streamd/tests/import_test.py -> build/bdist.linux-armv7l/wheel/./streamd/tests
2026-02-09T10:32:58,498   copying build/lib/streamd/tests/prolif_test.py -> build/bdist.linux-armv7l/wheel/./streamd/tests
2026-02-09T10:32:58,500   copying build/lib/streamd/tests/md_test.py -> build/bdist.linux-armv7l/wheel/./streamd/tests
2026-02-09T10:32:58,503   copying build/lib/streamd/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./streamd/tests
2026-02-09T10:32:58,504   copying build/lib/streamd/tests/system_name_test.py -> build/bdist.linux-armv7l/wheel/./streamd/tests
2026-02-09T10:32:58,506   copying build/lib/streamd/tests/decomp_dat_parser_test.py -> build/bdist.linux-armv7l/wheel/./streamd/tests
2026-02-09T10:32:58,509   creating build/bdist.linux-armv7l/wheel/streamd/mcpbpy_md
2026-02-09T10:32:58,510   copying build/lib/streamd/mcpbpy_md/mcbpy_md.py -> build/bdist.linux-armv7l/wheel/./streamd/mcpbpy_md
2026-02-09T10:32:58,512   copying build/lib/streamd/mcpbpy_md/__init__.py -> build/bdist.linux-armv7l/wheel/./streamd/mcpbpy_md
2026-02-09T10:32:58,514   copying build/lib/streamd/run_md.py -> build/bdist.linux-armv7l/wheel/./streamd
2026-02-09T10:32:58,517   copying build/lib/streamd/run_gbsa.py -> build/bdist.linux-armv7l/wheel/./streamd
2026-02-09T10:32:58,520   creating build/bdist.linux-armv7l/wheel/streamd/scripts
2026-02-09T10:32:58,522   creating build/bdist.linux-armv7l/wheel/streamd/scripts/mcpbpy_scripts
2026-02-09T10:32:58,523   copying build/lib/streamd/scripts/mcpbpy_scripts/protein.in -> build/bdist.linux-armv7l/wheel/./streamd/scripts/mcpbpy_scripts
2026-02-09T10:32:58,525   copying build/lib/streamd/scripts/prepare_Gaussian_input.py -> build/bdist.linux-armv7l/wheel/./streamd/scripts
2026-02-09T10:32:58,527   creating build/bdist.linux-armv7l/wheel/streamd/scripts/mdp
2026-02-09T10:32:58,528   copying build/lib/streamd/scripts/mdp/md.mdp -> build/bdist.linux-armv7l/wheel/./streamd/scripts/mdp
2026-02-09T10:32:58,531   copying build/lib/streamd/scripts/mdp/nvt.mdp -> build/bdist.linux-armv7l/wheel/./streamd/scripts/mdp
2026-02-09T10:32:58,533   copying build/lib/streamd/scripts/mdp/minim.mdp -> build/bdist.linux-armv7l/wheel/./streamd/scripts/mdp
2026-02-09T10:32:58,534   copying build/lib/streamd/scripts/mdp/npt.mdp -> build/bdist.linux-armv7l/wheel/./streamd/scripts/mdp
2026-02-09T10:32:58,536   copying build/lib/streamd/scripts/mdp/ions.mdp -> build/bdist.linux-armv7l/wheel/./streamd/scripts/mdp
2026-02-09T10:32:58,538   copying build/lib/streamd/scripts/tleap.in -> build/bdist.linux-armv7l/wheel/./streamd/scripts
2026-02-09T10:32:58,541   creating build/bdist.linux-armv7l/wheel/streamd/scripts/com
2026-02-09T10:32:58,542   copying build/lib/streamd/scripts/com/2.com -> build/bdist.linux-armv7l/wheel/./streamd/scripts/com
2026-02-09T10:32:58,543   copying build/lib/streamd/scripts/com/3.com -> build/bdist.linux-armv7l/wheel/./streamd/scripts/com
2026-02-09T10:32:58,546   copying build/lib/streamd/scripts/com/1.com -> build/bdist.linux-armv7l/wheel/./streamd/scripts/com
2026-02-09T10:32:58,547   copying build/lib/streamd/scripts/getcharge.py -> build/bdist.linux-armv7l/wheel/./streamd/scripts
2026-02-09T10:32:58,550   creating build/bdist.linux-armv7l/wheel/streamd/scripts/gbsa
2026-02-09T10:32:58,551   copying build/lib/streamd/scripts/gbsa/mmpbsa.in -> build/bdist.linux-armv7l/wheel/./streamd/scripts/gbsa
2026-02-09T10:32:58,553   copying build/lib/streamd/scripts/pmed_amb2gmx.py -> build/bdist.linux-armv7l/wheel/./streamd/scripts
2026-02-09T10:32:58,555   creating build/bdist.linux-armv7l/wheel/streamd/scripts/script_sh
2026-02-09T10:32:58,556   copying build/lib/streamd/scripts/script_sh/solv_ions.sh -> build/bdist.linux-armv7l/wheel/./streamd/scripts/script_sh
2026-02-09T10:32:58,558   copying build/lib/streamd/scripts/script_sh/ligand_mol2prep.sh -> build/bdist.linux-armv7l/wheel/./streamd/scripts/script_sh
2026-02-09T10:32:58,560   copying build/lib/streamd/scripts/script_sh/ligand_prep.sh -> build/bdist.linux-armv7l/wheel/./streamd/scripts/script_sh
2026-02-09T10:32:58,562   copying build/lib/streamd/scripts/script_sh/equlibration.sh -> build/bdist.linux-armv7l/wheel/./streamd/scripts/script_sh
2026-02-09T10:32:58,564   copying build/lib/streamd/scripts/script_sh/md_ligand_analysis.sh -> build/bdist.linux-armv7l/wheel/./streamd/scripts/script_sh
2026-02-09T10:32:58,566   copying build/lib/streamd/scripts/script_sh/ligand_mol2prep_by_gaussian.sh -> build/bdist.linux-armv7l/wheel/./streamd/scripts/script_sh
2026-02-09T10:32:58,568   copying build/lib/streamd/scripts/script_sh/continue_md.sh -> build/bdist.linux-armv7l/wheel/./streamd/scripts/script_sh
2026-02-09T10:32:58,569   copying build/lib/streamd/scripts/script_sh/md_analysis.sh -> build/bdist.linux-armv7l/wheel/./streamd/scripts/script_sh
2026-02-09T10:32:58,571   copying build/lib/streamd/scripts/script_sh/md.sh -> build/bdist.linux-armv7l/wheel/./streamd/scripts/script_sh
2026-02-09T10:32:58,573   copying build/lib/streamd/scripts/pdb2mol.py -> build/bdist.linux-armv7l/wheel/./streamd/scripts
2026-02-09T10:32:58,575   copying build/lib/streamd/scripts/mol2_fix_coordsbonds.py -> build/bdist.linux-armv7l/wheel/./streamd/scripts
2026-02-09T10:32:58,578   copying build/lib/streamd/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/./streamd/scripts
2026-02-09T10:32:58,580   creating build/bdist.linux-armv7l/wheel/streamd/prolif
2026-02-09T10:32:58,581   copying build/lib/streamd/prolif/prolif2png.py -> build/bdist.linux-armv7l/wheel/./streamd/prolif
2026-02-09T10:32:58,584   copying build/lib/streamd/prolif/prolif_frame_map.py -> build/bdist.linux-armv7l/wheel/./streamd/prolif
2026-02-09T10:32:58,586   copying build/lib/streamd/prolif/run_prolif.py -> build/bdist.linux-armv7l/wheel/./streamd/prolif
2026-02-09T10:32:58,590   copying build/lib/streamd/prolif/__init__.py -> build/bdist.linux-armv7l/wheel/./streamd/prolif
2026-02-09T10:32:58,592   creating build/bdist.linux-armv7l/wheel/streamd/analysis
2026-02-09T10:32:58,593   copying build/lib/streamd/analysis/run_analysis.py -> build/bdist.linux-armv7l/wheel/./streamd/analysis
2026-02-09T10:32:58,596   copying build/lib/streamd/analysis/xvg2png.py -> build/bdist.linux-armv7l/wheel/./streamd/analysis
2026-02-09T10:32:58,598   copying build/lib/streamd/analysis/md_system_analysis.py -> build/bdist.linux-armv7l/wheel/./streamd/analysis
2026-02-09T10:32:58,601   copying build/lib/streamd/analysis/plot_build.py -> build/bdist.linux-armv7l/wheel/./streamd/analysis
2026-02-09T10:32:58,603   copying build/lib/streamd/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/./streamd/analysis
2026-02-09T10:32:58,605   creating build/bdist.linux-armv7l/wheel/streamd/example
2026-02-09T10:32:58,607   copying build/lib/streamd/example/protein_HIS.pdb -> build/bdist.linux-armv7l/wheel/./streamd/example
2026-02-09T10:32:58,622   copying build/lib/streamd/example/instructions.txt -> build/bdist.linux-armv7l/wheel/./streamd/example
2026-02-09T10:32:58,623   copying build/lib/streamd/example/ligand.mol -> build/bdist.linux-armv7l/wheel/./streamd/example
2026-02-09T10:32:58,625   copying build/lib/streamd/__init__.py -> build/bdist.linux-armv7l/wheel/./streamd
2026-02-09T10:32:58,628   creating build/bdist.linux-armv7l/wheel/streamd/preparation
2026-02-09T10:32:58,629   copying build/lib/streamd/preparation/nonstandard_solvent_preparation.py -> build/bdist.linux-armv7l/wheel/./streamd/preparation
2026-02-09T10:32:58,631   copying build/lib/streamd/preparation/md_files_preparation.py -> build/bdist.linux-armv7l/wheel/./streamd/preparation
2026-02-09T10:32:58,633   copying build/lib/streamd/preparation/complex_preparation.py -> build/bdist.linux-armv7l/wheel/./streamd/preparation
2026-02-09T10:32:58,635   copying build/lib/streamd/preparation/mcpbpy_preparation.py -> build/bdist.linux-armv7l/wheel/./streamd/preparation
2026-02-09T10:32:58,638   copying build/lib/streamd/preparation/ligand_preparation.py -> build/bdist.linux-armv7l/wheel/./streamd/preparation
2026-02-09T10:32:58,640   copying build/lib/streamd/preparation/__init__.py -> build/bdist.linux-armv7l/wheel/./streamd/preparation
2026-02-09T10:32:58,643   creating build/bdist.linux-armv7l/wheel/streamd/utils
2026-02-09T10:32:58,644   copying build/lib/streamd/utils/dask_init.py -> build/bdist.linux-armv7l/wheel/./streamd/utils
2026-02-09T10:32:58,646   copying build/lib/streamd/utils/utils.py -> build/bdist.linux-armv7l/wheel/./streamd/utils
2026-02-09T10:32:58,649   copying build/lib/streamd/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./streamd/utils
2026-02-09T10:32:58,650   running install_egg_info
2026-02-09T10:32:58,686   Copying streamd.egg-info to build/bdist.linux-armv7l/wheel/./streamd-0.4.1-py3.11.egg-info
2026-02-09T10:32:58,698   running install_scripts
2026-02-09T10:32:58,711   creating build/bdist.linux-armv7l/wheel/streamd-0.4.1.dist-info/WHEEL
2026-02-09T10:32:58,713   creating '/tmp/pip-wheel-v3ic9hbk/streamd-0.4.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-02-09T10:32:58,716   adding 'streamd/__init__.py'
2026-02-09T10:32:58,720   adding 'streamd/run_gbsa.py'
2026-02-09T10:32:58,727   adding 'streamd/run_md.py'
2026-02-09T10:32:58,729   adding 'streamd/analysis/__init__.py'
2026-02-09T10:32:58,731   adding 'streamd/analysis/md_system_analysis.py'
2026-02-09T10:32:58,732   adding 'streamd/analysis/plot_build.py'
2026-02-09T10:32:58,735   adding 'streamd/analysis/run_analysis.py'
2026-02-09T10:32:58,737   adding 'streamd/analysis/xvg2png.py'
2026-02-09T10:32:58,738   adding 'streamd/example/instructions.txt'
2026-02-09T10:32:58,740   adding 'streamd/example/ligand.mol'
2026-02-09T10:32:58,802   adding 'streamd/example/protein_HIS.pdb'
2026-02-09T10:32:58,806   adding 'streamd/mcpbpy_md/__init__.py'
2026-02-09T10:32:58,807   adding 'streamd/mcpbpy_md/mcbpy_md.py'
2026-02-09T10:32:58,809   adding 'streamd/preparation/__init__.py'
2026-02-09T10:32:58,811   adding 'streamd/preparation/complex_preparation.py'
2026-02-09T10:32:58,813   adding 'streamd/preparation/ligand_preparation.py'
2026-02-09T10:32:58,816   adding 'streamd/preparation/mcpbpy_preparation.py'
2026-02-09T10:32:58,818   adding 'streamd/preparation/md_files_preparation.py'
2026-02-09T10:32:58,819   adding 'streamd/preparation/nonstandard_solvent_preparation.py'
2026-02-09T10:32:58,821   adding 'streamd/prolif/__init__.py'
2026-02-09T10:32:58,822   adding 'streamd/prolif/prolif2png.py'
2026-02-09T10:32:58,824   adding 'streamd/prolif/prolif_frame_map.py'
2026-02-09T10:32:58,826   adding 'streamd/prolif/run_prolif.py'
2026-02-09T10:32:58,828   adding 'streamd/scripts/__init__.py'
2026-02-09T10:32:58,829   adding 'streamd/scripts/getcharge.py'
2026-02-09T10:32:58,831   adding 'streamd/scripts/mol2_fix_coordsbonds.py'
2026-02-09T10:32:58,832   adding 'streamd/scripts/pdb2mol.py'
2026-02-09T10:32:58,833   adding 'streamd/scripts/pmed_amb2gmx.py'
2026-02-09T10:32:58,835   adding 'streamd/scripts/prepare_Gaussian_input.py'
2026-02-09T10:32:58,836   adding 'streamd/scripts/tleap.in'
2026-02-09T10:32:58,838   adding 'streamd/scripts/com/1.com'
2026-02-09T10:32:58,839   adding 'streamd/scripts/com/2.com'
2026-02-09T10:32:58,840   adding 'streamd/scripts/com/3.com'
2026-02-09T10:32:58,842   adding 'streamd/scripts/gbsa/mmpbsa.in'
2026-02-09T10:32:58,844   adding 'streamd/scripts/mcpbpy_scripts/protein.in'
2026-02-09T10:32:58,845   adding 'streamd/scripts/mdp/ions.mdp'
2026-02-09T10:32:58,847   adding 'streamd/scripts/mdp/md.mdp'
2026-02-09T10:32:58,848   adding 'streamd/scripts/mdp/minim.mdp'
2026-02-09T10:32:58,849   adding 'streamd/scripts/mdp/npt.mdp'
2026-02-09T10:32:58,851   adding 'streamd/scripts/mdp/nvt.mdp'
2026-02-09T10:32:58,853   adding 'streamd/scripts/script_sh/continue_md.sh'
2026-02-09T10:32:58,854   adding 'streamd/scripts/script_sh/equlibration.sh'
2026-02-09T10:32:58,855   adding 'streamd/scripts/script_sh/ligand_mol2prep.sh'
2026-02-09T10:32:58,856   adding 'streamd/scripts/script_sh/ligand_mol2prep_by_gaussian.sh'
2026-02-09T10:32:58,857   adding 'streamd/scripts/script_sh/ligand_prep.sh'
2026-02-09T10:32:58,859   adding 'streamd/scripts/script_sh/md.sh'
2026-02-09T10:32:58,860   adding 'streamd/scripts/script_sh/md_analysis.sh'
2026-02-09T10:32:58,861   adding 'streamd/scripts/script_sh/md_ligand_analysis.sh'
2026-02-09T10:32:58,862   adding 'streamd/scripts/script_sh/solv_ions.sh'
2026-02-09T10:32:58,864   adding 'streamd/tests/__init__.py'
2026-02-09T10:32:58,866   adding 'streamd/tests/analysis_test.py'
2026-02-09T10:32:58,867   adding 'streamd/tests/config_cli_test.py'
2026-02-09T10:32:58,869   adding 'streamd/tests/conftest.py'
2026-02-09T10:32:58,870   adding 'streamd/tests/decomp_dat_parser_test.py'
2026-02-09T10:32:58,872   adding 'streamd/tests/gbsa_test.py'
2026-02-09T10:32:58,873   adding 'streamd/tests/import_test.py'
2026-02-09T10:32:58,875   adding 'streamd/tests/md_test.py'
2026-02-09T10:32:58,876   adding 'streamd/tests/plot_build_test.py'
2026-02-09T10:32:58,877   adding 'streamd/tests/preparation_test.py'
2026-02-09T10:32:58,879   adding 'streamd/tests/prolif_test.py'
2026-02-09T10:32:58,880   adding 'streamd/tests/system_name_test.py'
2026-02-09T10:32:58,882   adding 'streamd/utils/__init__.py'
2026-02-09T10:32:58,883   adding 'streamd/utils/dask_init.py'
2026-02-09T10:32:58,885   adding 'streamd/utils/utils.py'
2026-02-09T10:32:58,888   adding 'streamd-0.4.1.dist-info/licenses/LICENSE.txt'
2026-02-09T10:32:58,889   adding 'streamd-0.4.1.dist-info/METADATA'
2026-02-09T10:32:58,890   adding 'streamd-0.4.1.dist-info/WHEEL'
2026-02-09T10:32:58,891   adding 'streamd-0.4.1.dist-info/entry_points.txt'
2026-02-09T10:32:58,892   adding 'streamd-0.4.1.dist-info/top_level.txt'
2026-02-09T10:32:58,894   adding 'streamd-0.4.1.dist-info/RECORD'
2026-02-09T10:32:58,897   removing build/bdist.linux-armv7l/wheel
2026-02-09T10:32:59,028   Building wheel for streamd (setup.py): finished with status 'done'
2026-02-09T10:32:59,033   Created wheel for streamd: filename=streamd-0.4.1-py3-none-any.whl size=189166 sha256=c80c87fbbc88e6ba69ce26cafce92ef19566c7349fd066d1e69e520d768b6f07
2026-02-09T10:32:59,034   Stored in directory: /tmp/pip-ephem-wheel-cache-h7jxsw6h/wheels/7a/3c/6b/c40dd90e2e691d95e48f9738ef065647d23a30dc49a00bac2b
2026-02-09T10:32:59,047 Successfully built streamd
2026-02-09T10:32:59,054 Removed build tracker: '/tmp/pip-build-tracker-qiea43d4'