2026-02-09T16:21:54,539 Created temporary directory: /tmp/pip-ephem-wheel-cache-58u9pudb 2026-02-09T16:21:54,541 Created temporary directory: /tmp/pip-build-tracker-jzwy7h56 2026-02-09T16:21:54,541 Initialized build tracking at /tmp/pip-build-tracker-jzwy7h56 2026-02-09T16:21:54,542 Created build tracker: /tmp/pip-build-tracker-jzwy7h56 2026-02-09T16:21:54,542 Entered build tracker: /tmp/pip-build-tracker-jzwy7h56 2026-02-09T16:21:54,543 Created temporary directory: /tmp/pip-wheel-qahh06pw 2026-02-09T16:21:54,547 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-02-09T16:21:54,549 Created temporary directory: /tmp/pip-ephem-wheel-cache-ns3eic4g 2026-02-09T16:21:54,577 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-02-09T16:21:54,581 2 location(s) to search for versions of cool-seq-tool: 2026-02-09T16:21:54,581 * https://pypi.org/simple/cool-seq-tool/ 2026-02-09T16:21:54,581 * https://www.piwheels.org/simple/cool-seq-tool/ 2026-02-09T16:21:54,582 Fetching project page and analyzing links: https://pypi.org/simple/cool-seq-tool/ 2026-02-09T16:21:54,582 Getting page https://pypi.org/simple/cool-seq-tool/ 2026-02-09T16:21:54,584 Found index url https://pypi.org/simple 2026-02-09T16:21:54,802 Fetched page https://pypi.org/simple/cool-seq-tool/ as application/vnd.pypi.simple.v1+json 2026-02-09T16:21:54,819 Skipping link: No binaries permitted for cool-seq-tool: https://files.pythonhosted.org/packages/fa/06/a3365ef2f3aa1e7370d16a48e8f058ba6f924d314e1f1e84d8fda49c0085/cool_seq_tool-0.1.4-py3-none-any.whl (from https://pypi.org/simple/cool-seq-tool/) (requires-python:>=3.8) 2026-02-09T16:21:54,821 Found link https://files.pythonhosted.org/packages/c0/ca/6a1e8e05147b03a4ddfcecfeee10e744bb25afe636633e5d1749189760bd/cool_seq_tool-0.1.4.tar.gz (from https://pypi.org/simple/cool-seq-tool/) (requires-python:>=3.8), version: 0.1.4 2026-02-09T16:21:54,821 Skipping link: No binaries permitted for cool-seq-tool: https://files.pythonhosted.org/packages/02/21/8d61ea0ffb7c583c3348e7ef0bc98ac57fc386410c2488bfbb3b770133d2/cool_seq_tool-0.1.5-py3-none-any.whl (from https://pypi.org/simple/cool-seq-tool/) (requires-python:>=3.8) 2026-02-09T16:21:54,822 Found link https://files.pythonhosted.org/packages/0a/bf/88f64dd3906c3ac1a79b3d72f11ca950ce3028bea0e114f526432cfdfb86/cool_seq_tool-0.1.5.tar.gz (from https://pypi.org/simple/cool-seq-tool/) 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https://www.piwheels.org/simple/cool-seq-tool/) (requires-python:>=3.8) 2026-02-09T16:21:55,119 Skipping link: No binaries permitted for cool-seq-tool: https://archive1.piwheels.org/simple/cool-seq-tool/cool_seq_tool-0.1.4-py3-none-any.whl#sha256=99837ef6073c54c2795f87af602a31fb916f37a7c1b365962a9e13f9049b0c3d (from https://www.piwheels.org/simple/cool-seq-tool/) (requires-python:>=3.8) 2026-02-09T16:21:55,120 Skipping link: not a file: https://www.piwheels.org/simple/cool-seq-tool/ 2026-02-09T16:21:55,120 Skipping link: not a file: https://pypi.org/simple/cool-seq-tool/ 2026-02-09T16:21:55,144 Given no hashes to check 1 links for project 'cool-seq-tool': discarding no candidates 2026-02-09T16:21:55,162 Collecting cool-seq-tool==0.15.3 2026-02-09T16:21:55,164 Created temporary directory: /tmp/pip-unpack-gnox2sk_ 2026-02-09T16:21:55,382 Downloading cool_seq_tool-0.15.3.tar.gz (4.4 MB) 2026-02-09T16:21:57,076 Added cool-seq-tool==0.15.3 from https://files.pythonhosted.org/packages/8f/f3/cc0c0241e9df001e71ae5622a5a1d0b22ac0fb8d1f7a43832d7136a5a610/cool_seq_tool-0.15.3.tar.gz to build tracker '/tmp/pip-build-tracker-jzwy7h56' 2026-02-09T16:21:57,083 Created temporary directory: /tmp/pip-build-env-f9ipev_l 2026-02-09T16:21:57,088 Installing build dependencies: started 2026-02-09T16:21:57,089 Running command pip subprocess to install build dependencies 2026-02-09T16:21:58,216 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-02-09T16:21:58,830 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-02-09T16:21:58,853 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-02-09T16:22:00,607 Collecting setuptools>=64 2026-02-09T16:22:00,627 Using cached setuptools-82.0.0-py3-none-any.whl (1.0 MB) 2026-02-09T16:22:00,994 Collecting setuptools_scm>=8 2026-02-09T16:22:01,011 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-9.2.2-py3-none-any.whl (62 kB) 2026-02-09T16:22:01,209 Collecting packaging>=20 2026-02-09T16:22:01,229 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-02-09T16:22:04,247 Installing collected packages: setuptools, packaging, setuptools_scm 2026-02-09T16:22:08,597 Creating /tmp/pip-build-env-f9ipev_l/overlay/local/bin 2026-02-09T16:22:08,600 changing mode of /tmp/pip-build-env-f9ipev_l/overlay/local/bin/setuptools-scm to 755 2026-02-09T16:22:08,624 Successfully installed packaging-26.0 setuptools-82.0.0 setuptools_scm-9.2.2 2026-02-09T16:22:08,906 Installing build dependencies: finished with status 'done' 2026-02-09T16:22:08,914 Getting requirements to build wheel: started 2026-02-09T16:22:08,915 Running command Getting requirements to build wheel 2026-02-09T16:22:09,697 running egg_info 2026-02-09T16:22:09,704 writing src/cool_seq_tool.egg-info/PKG-INFO 2026-02-09T16:22:09,712 writing dependency_links to src/cool_seq_tool.egg-info/dependency_links.txt 2026-02-09T16:22:09,716 writing requirements to src/cool_seq_tool.egg-info/requires.txt 2026-02-09T16:22:09,717 writing top-level names to src/cool_seq_tool.egg-info/top_level.txt 2026-02-09T16:22:09,768 listing git files failed - pretending there aren't any 2026-02-09T16:22:09,773 reading manifest file 'src/cool_seq_tool.egg-info/SOURCES.txt' 2026-02-09T16:22:09,781 adding license file 'LICENSE' 2026-02-09T16:22:09,786 writing manifest file 'src/cool_seq_tool.egg-info/SOURCES.txt' 2026-02-09T16:22:09,888 Getting requirements to build wheel: finished with status 'done' 2026-02-09T16:22:09,891 Created temporary directory: /tmp/pip-modern-metadata-a7atbmup 2026-02-09T16:22:09,894 Preparing metadata (pyproject.toml): started 2026-02-09T16:22:09,895 Running command Preparing metadata (pyproject.toml) 2026-02-09T16:22:10,609 running dist_info 2026-02-09T16:22:10,621 creating /tmp/pip-modern-metadata-a7atbmup/cool_seq_tool.egg-info 2026-02-09T16:22:10,622 writing /tmp/pip-modern-metadata-a7atbmup/cool_seq_tool.egg-info/PKG-INFO 2026-02-09T16:22:10,630 writing dependency_links to /tmp/pip-modern-metadata-a7atbmup/cool_seq_tool.egg-info/dependency_links.txt 2026-02-09T16:22:10,634 writing requirements to /tmp/pip-modern-metadata-a7atbmup/cool_seq_tool.egg-info/requires.txt 2026-02-09T16:22:10,635 writing top-level names to /tmp/pip-modern-metadata-a7atbmup/cool_seq_tool.egg-info/top_level.txt 2026-02-09T16:22:10,637 writing manifest file '/tmp/pip-modern-metadata-a7atbmup/cool_seq_tool.egg-info/SOURCES.txt' 2026-02-09T16:22:10,680 listing git files failed - pretending there aren't any 2026-02-09T16:22:10,685 reading manifest file '/tmp/pip-modern-metadata-a7atbmup/cool_seq_tool.egg-info/SOURCES.txt' 2026-02-09T16:22:10,687 adding license file 'LICENSE' 2026-02-09T16:22:10,690 writing manifest file '/tmp/pip-modern-metadata-a7atbmup/cool_seq_tool.egg-info/SOURCES.txt' 2026-02-09T16:22:10,691 creating '/tmp/pip-modern-metadata-a7atbmup/cool_seq_tool-0.15.3.dist-info' 2026-02-09T16:22:10,822 Preparing metadata (pyproject.toml): finished with status 'done' 2026-02-09T16:22:10,827 Source in /tmp/pip-wheel-qahh06pw/cool-seq-tool_d172946e5e7640a6b9a6af3f5dbf959d has version 0.15.3, which satisfies requirement cool-seq-tool==0.15.3 from https://files.pythonhosted.org/packages/8f/f3/cc0c0241e9df001e71ae5622a5a1d0b22ac0fb8d1f7a43832d7136a5a610/cool_seq_tool-0.15.3.tar.gz 2026-02-09T16:22:10,828 Removed cool-seq-tool==0.15.3 from https://files.pythonhosted.org/packages/8f/f3/cc0c0241e9df001e71ae5622a5a1d0b22ac0fb8d1f7a43832d7136a5a610/cool_seq_tool-0.15.3.tar.gz from build tracker '/tmp/pip-build-tracker-jzwy7h56' 2026-02-09T16:22:10,834 Created temporary directory: /tmp/pip-unpack-l8_le8ny 2026-02-09T16:22:10,834 Building wheels for collected packages: cool-seq-tool 2026-02-09T16:22:10,839 Created temporary directory: /tmp/pip-wheel-w_qmw_ae 2026-02-09T16:22:10,840 Destination directory: /tmp/pip-wheel-w_qmw_ae 2026-02-09T16:22:10,842 Building wheel for cool-seq-tool (pyproject.toml): started 2026-02-09T16:22:10,843 Running command Building wheel for cool-seq-tool (pyproject.toml) 2026-02-09T16:22:11,569 running bdist_wheel 2026-02-09T16:22:11,591 running build 2026-02-09T16:22:11,592 running build_py 2026-02-09T16:22:11,599 creating build/lib/cool_seq_tool 2026-02-09T16:22:11,601 copying src/cool_seq_tool/app.py -> build/lib/cool_seq_tool 2026-02-09T16:22:11,604 copying src/cool_seq_tool/schemas.py -> build/lib/cool_seq_tool 2026-02-09T16:22:11,606 copying src/cool_seq_tool/utils.py -> build/lib/cool_seq_tool 2026-02-09T16:22:11,608 copying src/cool_seq_tool/__init__.py -> build/lib/cool_seq_tool 2026-02-09T16:22:11,611 creating build/lib/cool_seq_tool/handlers 2026-02-09T16:22:11,612 copying src/cool_seq_tool/handlers/seqrepo_access.py -> build/lib/cool_seq_tool/handlers 2026-02-09T16:22:11,614 copying src/cool_seq_tool/handlers/__init__.py -> build/lib/cool_seq_tool/handlers 2026-02-09T16:22:11,617 creating build/lib/cool_seq_tool/sources 2026-02-09T16:22:11,618 copying src/cool_seq_tool/sources/transcript_mappings.py -> build/lib/cool_seq_tool/sources 2026-02-09T16:22:11,621 copying src/cool_seq_tool/sources/uta_database.py -> build/lib/cool_seq_tool/sources 2026-02-09T16:22:11,624 copying src/cool_seq_tool/sources/mane_transcript_mappings.py -> build/lib/cool_seq_tool/sources 2026-02-09T16:22:11,626 copying src/cool_seq_tool/sources/__init__.py -> build/lib/cool_seq_tool/sources 2026-02-09T16:22:11,629 creating build/lib/cool_seq_tool/mappers 2026-02-09T16:22:11,630 copying src/cool_seq_tool/mappers/liftover.py -> build/lib/cool_seq_tool/mappers 2026-02-09T16:22:11,631 copying src/cool_seq_tool/mappers/exon_genomic_coords.py -> build/lib/cool_seq_tool/mappers 2026-02-09T16:22:11,634 copying src/cool_seq_tool/mappers/feature_overlap.py -> build/lib/cool_seq_tool/mappers 2026-02-09T16:22:11,637 copying src/cool_seq_tool/mappers/alignment.py -> build/lib/cool_seq_tool/mappers 2026-02-09T16:22:11,639 copying src/cool_seq_tool/mappers/__init__.py -> build/lib/cool_seq_tool/mappers 2026-02-09T16:22:11,641 copying src/cool_seq_tool/mappers/mane_transcript.py -> build/lib/cool_seq_tool/mappers 2026-02-09T16:22:11,645 creating build/lib/cool_seq_tool/resources 2026-02-09T16:22:11,646 copying src/cool_seq_tool/resources/status.py -> build/lib/cool_seq_tool/resources 2026-02-09T16:22:11,648 copying src/cool_seq_tool/resources/data_files.py -> build/lib/cool_seq_tool/resources 2026-02-09T16:22:11,651 copying src/cool_seq_tool/resources/__init__.py -> build/lib/cool_seq_tool/resources 2026-02-09T16:22:11,652 running egg_info 2026-02-09T16:22:11,664 writing src/cool_seq_tool.egg-info/PKG-INFO 2026-02-09T16:22:11,671 writing dependency_links to src/cool_seq_tool.egg-info/dependency_links.txt 2026-02-09T16:22:11,675 writing requirements to src/cool_seq_tool.egg-info/requires.txt 2026-02-09T16:22:11,676 writing top-level names to src/cool_seq_tool.egg-info/top_level.txt 2026-02-09T16:22:11,710 listing git files failed - pretending there aren't any 2026-02-09T16:22:11,715 reading manifest file 'src/cool_seq_tool.egg-info/SOURCES.txt' 2026-02-09T16:22:11,719 adding license file 'LICENSE' 2026-02-09T16:22:11,724 writing manifest file 'src/cool_seq_tool.egg-info/SOURCES.txt' 2026-02-09T16:22:11,729 copying src/cool_seq_tool/resources/transcript_mapping.tsv -> build/lib/cool_seq_tool/resources 2026-02-09T16:22:12,111 installing to build/bdist.linux-armv7l/wheel 2026-02-09T16:22:12,112 running install 2026-02-09T16:22:12,136 running install_lib 2026-02-09T16:22:12,143 creating build/bdist.linux-armv7l/wheel 2026-02-09T16:22:12,146 creating build/bdist.linux-armv7l/wheel/cool_seq_tool 2026-02-09T16:22:12,147 copying build/lib/cool_seq_tool/app.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool 2026-02-09T16:22:12,151 creating build/bdist.linux-armv7l/wheel/cool_seq_tool/handlers 2026-02-09T16:22:12,152 copying build/lib/cool_seq_tool/handlers/seqrepo_access.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/handlers 2026-02-09T16:22:12,155 copying build/lib/cool_seq_tool/handlers/__init__.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/handlers 2026-02-09T16:22:12,157 copying build/lib/cool_seq_tool/schemas.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool 2026-02-09T16:22:12,160 creating build/bdist.linux-armv7l/wheel/cool_seq_tool/sources 2026-02-09T16:22:12,161 copying build/lib/cool_seq_tool/sources/transcript_mappings.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/sources 2026-02-09T16:22:12,164 copying build/lib/cool_seq_tool/sources/uta_database.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/sources 2026-02-09T16:22:12,167 copying build/lib/cool_seq_tool/sources/mane_transcript_mappings.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/sources 2026-02-09T16:22:12,169 copying build/lib/cool_seq_tool/sources/__init__.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/sources 2026-02-09T16:22:12,172 creating build/bdist.linux-armv7l/wheel/cool_seq_tool/mappers 2026-02-09T16:22:12,173 copying build/lib/cool_seq_tool/mappers/liftover.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/mappers 2026-02-09T16:22:12,176 copying build/lib/cool_seq_tool/mappers/exon_genomic_coords.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/mappers 2026-02-09T16:22:12,179 copying build/lib/cool_seq_tool/mappers/feature_overlap.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/mappers 2026-02-09T16:22:12,181 copying build/lib/cool_seq_tool/mappers/alignment.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/mappers 2026-02-09T16:22:12,184 copying build/lib/cool_seq_tool/mappers/__init__.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/mappers 2026-02-09T16:22:12,186 copying build/lib/cool_seq_tool/mappers/mane_transcript.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/mappers 2026-02-09T16:22:12,189 copying build/lib/cool_seq_tool/utils.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool 2026-02-09T16:22:12,192 creating build/bdist.linux-armv7l/wheel/cool_seq_tool/resources 2026-02-09T16:22:12,193 copying build/lib/cool_seq_tool/resources/transcript_mapping.tsv -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/resources 2026-02-09T16:22:12,546 copying build/lib/cool_seq_tool/resources/status.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/resources 2026-02-09T16:22:12,548 copying build/lib/cool_seq_tool/resources/data_files.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/resources 2026-02-09T16:22:12,551 copying build/lib/cool_seq_tool/resources/__init__.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/resources 2026-02-09T16:22:12,553 copying build/lib/cool_seq_tool/__init__.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool 2026-02-09T16:22:12,555 running install_egg_info 2026-02-09T16:22:12,561 Copying src/cool_seq_tool.egg-info to build/bdist.linux-armv7l/wheel/./cool_seq_tool-0.15.3-py3.11.egg-info 2026-02-09T16:22:12,571 running install_scripts 2026-02-09T16:22:12,581 creating build/bdist.linux-armv7l/wheel/cool_seq_tool-0.15.3.dist-info/WHEEL 2026-02-09T16:22:12,584 creating '/tmp/pip-wheel-w_qmw_ae/.tmp-m3e8ka5x/cool_seq_tool-0.15.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-02-09T16:22:12,587 adding 'cool_seq_tool/__init__.py' 2026-02-09T16:22:12,589 adding 'cool_seq_tool/app.py' 2026-02-09T16:22:12,591 adding 'cool_seq_tool/schemas.py' 2026-02-09T16:22:12,592 adding 'cool_seq_tool/utils.py' 2026-02-09T16:22:12,594 adding 'cool_seq_tool/handlers/__init__.py' 2026-02-09T16:22:12,596 adding 'cool_seq_tool/handlers/seqrepo_access.py' 2026-02-09T16:22:12,598 adding 'cool_seq_tool/mappers/__init__.py' 2026-02-09T16:22:12,600 adding 'cool_seq_tool/mappers/alignment.py' 2026-02-09T16:22:12,607 adding 'cool_seq_tool/mappers/exon_genomic_coords.py' 2026-02-09T16:22:12,609 adding 'cool_seq_tool/mappers/feature_overlap.py' 2026-02-09T16:22:12,611 adding 'cool_seq_tool/mappers/liftover.py' 2026-02-09T16:22:12,616 adding 'cool_seq_tool/mappers/mane_transcript.py' 2026-02-09T16:22:12,619 adding 'cool_seq_tool/resources/__init__.py' 2026-02-09T16:22:12,620 adding 'cool_seq_tool/resources/data_files.py' 2026-02-09T16:22:12,622 adding 'cool_seq_tool/resources/status.py' 2026-02-09T16:22:15,225 adding 'cool_seq_tool/resources/transcript_mapping.tsv' 2026-02-09T16:22:15,377 adding 'cool_seq_tool/sources/__init__.py' 2026-02-09T16:22:15,379 adding 'cool_seq_tool/sources/mane_transcript_mappings.py' 2026-02-09T16:22:15,381 adding 'cool_seq_tool/sources/transcript_mappings.py' 2026-02-09T16:22:15,386 adding 'cool_seq_tool/sources/uta_database.py' 2026-02-09T16:22:15,389 adding 'cool_seq_tool-0.15.3.dist-info/licenses/LICENSE' 2026-02-09T16:22:15,390 adding 'cool_seq_tool-0.15.3.dist-info/METADATA' 2026-02-09T16:22:15,392 adding 'cool_seq_tool-0.15.3.dist-info/WHEEL' 2026-02-09T16:22:15,393 adding 'cool_seq_tool-0.15.3.dist-info/top_level.txt' 2026-02-09T16:22:15,395 adding 'cool_seq_tool-0.15.3.dist-info/RECORD' 2026-02-09T16:22:15,440 removing build/bdist.linux-armv7l/wheel 2026-02-09T16:22:15,558 Building wheel for cool-seq-tool (pyproject.toml): finished with status 'done' 2026-02-09T16:22:15,639 Created wheel for cool-seq-tool: filename=cool_seq_tool-0.15.3-py3-none-any.whl size=4046153 sha256=fa7ca5a4a6e4b20524139f240a4d65f2ec7fd3466644cec8c5e2890c84d3df60 2026-02-09T16:22:15,640 Stored in directory: /tmp/pip-ephem-wheel-cache-ns3eic4g/wheels/a8/b4/52/bc8c0c5184df3ece35d240860814272017d658981c6ab5f8a9 2026-02-09T16:22:15,653 Successfully built cool-seq-tool 2026-02-09T16:22:15,753 Removed build tracker: '/tmp/pip-build-tracker-jzwy7h56'