2026-02-09T19:31:51,165 Created temporary directory: /tmp/pip-ephem-wheel-cache-x6xbfhd3 2026-02-09T19:31:51,167 Created temporary directory: /tmp/pip-build-tracker-dzecefxr 2026-02-09T19:31:51,168 Initialized build tracking at /tmp/pip-build-tracker-dzecefxr 2026-02-09T19:31:51,168 Created build tracker: /tmp/pip-build-tracker-dzecefxr 2026-02-09T19:31:51,169 Entered build tracker: /tmp/pip-build-tracker-dzecefxr 2026-02-09T19:31:51,170 Created temporary directory: /tmp/pip-wheel-odmkhwdu 2026-02-09T19:31:51,172 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-02-09T19:31:51,175 Created temporary directory: /tmp/pip-ephem-wheel-cache-y7gzlxl6 2026-02-09T19:31:51,197 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-02-09T19:31:51,201 2 location(s) to search for versions of graphein: 2026-02-09T19:31:51,201 * https://pypi.org/simple/graphein/ 2026-02-09T19:31:51,201 * https://www.piwheels.org/simple/graphein/ 2026-02-09T19:31:51,201 Fetching project page and analyzing links: https://pypi.org/simple/graphein/ 2026-02-09T19:31:51,202 Getting page https://pypi.org/simple/graphein/ 2026-02-09T19:31:51,203 Found index url https://pypi.org/simple 2026-02-09T19:31:51,419 Fetched page https://pypi.org/simple/graphein/ as application/vnd.pypi.simple.v1+json 2026-02-09T19:31:51,428 Skipping link: No binaries permitted for graphein: https://files.pythonhosted.org/packages/e1/df/4eceb1f0a4e2a15f293a3af97dbad5fbec1483b742f813d176d522e6b2f2/graphein-1.0.0-py2.py3-none-any.whl (from https://pypi.org/simple/graphein/) (requires-python:>=3.7) 2026-02-09T19:31:51,429 Skipping link: No binaries permitted for graphein: https://files.pythonhosted.org/packages/1c/3c/721d31295bb62f80bd0601f5ec7ea1eed16e300cdeed67e551d11a0b9f28/graphein-1.0.0-py3-none-any.whl (from https://pypi.org/simple/graphein/) (requires-python:>=3.7) 2026-02-09T19:31:51,430 Found link https://files.pythonhosted.org/packages/a3/03/5013dd08bf808fa89c2611704525a11c650edaf537025db2c8e78141d662/graphein-1.0.0.tar.gz (from https://pypi.org/simple/graphein/) (requires-python:>=3.7), version: 1.0.0 2026-02-09T19:31:51,430 Skipping link: No binaries permitted for graphein: https://files.pythonhosted.org/packages/80/eb/4bd4946bb40dbb31386c574d1508098f24c654799d31efe56663106d2511/graphein-1.0.1-py2.py3-none-any.whl (from https://pypi.org/simple/graphein/) (requires-python:>=3.7) 2026-02-09T19:31:51,431 Found link https://files.pythonhosted.org/packages/89/6f/b26df468555a0d20537d8b6ee1f4fe4d9eaa0ac64e05c1231af0af2c3416/graphein-1.0.1.tar.gz (from https://pypi.org/simple/graphein/) (requires-python:>=3.7), version: 1.0.1 2026-02-09T19:31:51,432 Skipping link: No binaries permitted for graphein: https://files.pythonhosted.org/packages/06/e9/3f5486c9a20e79df858093d1a8a0d9f413aced6f8130b4b42d0aeed220ea/graphein-1.0.2-py2.py3-none-any.whl (from https://pypi.org/simple/graphein/) (requires-python:>=3.8) 2026-02-09T19:31:51,433 Found link https://files.pythonhosted.org/packages/72/5d/3e72490e7e504342a76fc520bd69c1af6550d13fe99f889767883adb5f76/graphein-1.0.2.tar.gz (from https://pypi.org/simple/graphein/) (requires-python:>=3.8), version: 1.0.2 2026-02-09T19:31:51,434 Skipping link: No binaries permitted for graphein: https://files.pythonhosted.org/packages/1d/da/cee96b84a42b058926a265f5336fcfd1b0ebb88762df7a2299d52382ce02/graphein-1.0.3-py2.py3-none-any.whl (from https://pypi.org/simple/graphein/) (requires-python:>=3.8) 2026-02-09T19:31:51,434 Skipping link: No binaries permitted for graphein: https://files.pythonhosted.org/packages/98/f8/5c7e88d681fca9c214bc4e212840e281cf01e11c1b1288abac2600bba83d/graphein-1.0.3-py3-none-any.whl (from https://pypi.org/simple/graphein/) (requires-python:>=3.8) 2026-02-09T19:31:51,435 Found link https://files.pythonhosted.org/packages/c0/4d/dcd09f879f83b6f76e8259529f268b53ba92e30075328b6000d12dc446f0/graphein-1.0.3.tar.gz (from https://pypi.org/simple/graphein/) (requires-python:>=3.8), version: 1.0.3 2026-02-09T19:31:51,437 Skipping link: No binaries permitted for graphein: https://files.pythonhosted.org/packages/67/ae/36d0f9a5d30ceb0948cfb14760194e2af3ec17cad898263500cea6a87c38/graphein-1.0.4-py3-none-any.whl (from https://pypi.org/simple/graphein/) (requires-python:>=3.8) 2026-02-09T19:31:51,437 Found link https://files.pythonhosted.org/packages/7c/d2/52f3e53b623ec02094c2c4f9f6709b653af510fceb8c3afa5dc856c877e2/graphein-1.0.5.tar.gz (from https://pypi.org/simple/graphein/) (requires-python:>=3.8), version: 1.0.5 2026-02-09T19:31:51,438 Found link https://files.pythonhosted.org/packages/ff/4e/f070a0a35583587d2f65c2a6c6279b47061037ece6f56e3ad5cf64ffb001/graphein-1.0.6.tar.gz (from https://pypi.org/simple/graphein/) (requires-python:>=3.8), version: 1.0.6 2026-02-09T19:31:51,439 Found link https://files.pythonhosted.org/packages/c0/1e/86942109d65323cdef5992c3189ef29adaf5a1df2af77f83235fa2bef5d4/graphein-1.0.7.tar.gz (from https://pypi.org/simple/graphein/) (requires-python:>=3.8), version: 1.0.7 2026-02-09T19:31:51,440 Found link https://files.pythonhosted.org/packages/88/19/ba458423a3873907a29173aec9ef8e88807c09f47419055b49ac07b6054f/graphein-1.0.8.tar.gz (from https://pypi.org/simple/graphein/) (requires-python:>=3.8), version: 1.0.8 2026-02-09T19:31:51,441 Found link https://files.pythonhosted.org/packages/76/d6/290a9c52c47a9a2bf7ced78e3d5629100b0c29982affc27dfc8975109b67/graphein-1.0.9.tar.gz (from https://pypi.org/simple/graphein/) (requires-python:>=3.8), version: 1.0.9 2026-02-09T19:31:51,442 Found link https://files.pythonhosted.org/packages/3b/d7/f1a9e9d4ce008c1e89ee4f45964c83ffb1ebad056d72da758efe373a99be/graphein-1.0.10.tar.gz (from https://pypi.org/simple/graphein/) (requires-python:>=3.8), version: 1.0.10 2026-02-09T19:31:51,442 Found link https://files.pythonhosted.org/packages/da/65/f548cc2ca933290ad03d8e9d397d3be7a7c594804025430841b8dc122c8c/graphein-1.0.11.tar.gz (from https://pypi.org/simple/graphein/) (requires-python:>=3.7), version: 1.0.11 2026-02-09T19:31:51,443 Found link https://files.pythonhosted.org/packages/b6/87/af6e9742d294a247570b7880f071d1a83f3533d72c830abb179bd5dd6220/graphein-1.1.0.tar.gz (from https://pypi.org/simple/graphein/) (requires-python:>=3.7), version: 1.1.0 2026-02-09T19:31:51,444 Found link https://files.pythonhosted.org/packages/30/6a/bbd45a4d98796c419ca59a308f5c922114c8e62b9d4f82a1870e845bfb8d/graphein-1.1.1.tar.gz (from https://pypi.org/simple/graphein/) (requires-python:>=3.7), version: 1.1.1 2026-02-09T19:31:51,445 Found link https://files.pythonhosted.org/packages/11/47/0b277447627af7b09c80f8a3076d41fda8586be9005e58d9a13b2ecd9661/graphein-1.2.0.tar.gz (from https://pypi.org/simple/graphein/) (requires-python:>=3.7), version: 1.2.0 2026-02-09T19:31:51,446 Found link https://files.pythonhosted.org/packages/2f/96/51a1b3136a26034d251ad616a11f85eeb6da18fdaec6a4b56e512f484d8d/graphein-1.2.1.tar.gz (from https://pypi.org/simple/graphein/) (requires-python:>=3.7), version: 1.2.1 2026-02-09T19:31:51,447 Found link https://files.pythonhosted.org/packages/c0/01/cd844bc433848e2c7867558e96461b4af35754f113ce12c61164b580277a/graphein-1.3.0.tar.gz (from https://pypi.org/simple/graphein/) (requires-python:>=3.7), version: 1.3.0 2026-02-09T19:31:51,448 Found link https://files.pythonhosted.org/packages/f3/00/6e7d2fe8344a32b6151fa5a21eea77808cb3cd74ed950a7e2bc936930aba/graphein-1.4.0.tar.gz (from https://pypi.org/simple/graphein/) (requires-python:>=3.7), version: 1.4.0 2026-02-09T19:31:51,449 Found link https://files.pythonhosted.org/packages/2c/d4/89d0285deed910d312fb8e7568e1771866494516502e53f3d90177b0e9ec/graphein-1.5.0rc1.tar.gz (from https://pypi.org/simple/graphein/) (requires-python:>=3.7), version: 1.5.0rc1 2026-02-09T19:31:51,450 Found link https://files.pythonhosted.org/packages/db/42/93c7581283fdafdb03ffe7d22c9fa07cba62430a628d626ad16a0bb85ec4/graphein-1.5.0.tar.gz (from https://pypi.org/simple/graphein/) (requires-python:>=3.7), version: 1.5.0 2026-02-09T19:31:51,451 Found link https://files.pythonhosted.org/packages/74/c9/8f9058bd6a4ac752c8ebf9c9d3bf0f75a2e5233873ec9ebc8865c0cc08a0/graphein-1.5.1.tar.gz (from https://pypi.org/simple/graphein/) (requires-python:>=3.7), version: 1.5.1 2026-02-09T19:31:51,452 Found link https://files.pythonhosted.org/packages/d1/1e/212b70b04e33e3ca00d06b007a6f5d23a9e75ab162095541bc5ea196d998/graphein-1.5.2.tar.gz (from https://pypi.org/simple/graphein/) (requires-python:>=3.7), version: 1.5.2 2026-02-09T19:31:51,453 Found link https://files.pythonhosted.org/packages/c3/31/044538dea617f3c1c1fb9f9a00fb6d2c1960aebb3a3db279c4cda5ad9930/graphein-1.6.0.tar.gz (from https://pypi.org/simple/graphein/) (requires-python:>=3.7), version: 1.6.0 2026-02-09T19:31:51,453 Skipping link: No binaries permitted for graphein: https://files.pythonhosted.org/packages/cd/9b/8dac9dcbd80c85bd03e18564431caa316662dba88ea56f35680b522b62e2/graphein-1.7.0-py3-none-any.whl (from https://pypi.org/simple/graphein/) (requires-python:>=3.7) 2026-02-09T19:31:51,454 Found link https://files.pythonhosted.org/packages/a7/be/af71315a7518c5041fcbf81c0bc2d61dcca01ca9e7d7c5bed0c88945e5c4/graphein-1.7.0.tar.gz (from https://pypi.org/simple/graphein/) (requires-python:>=3.7), version: 1.7.0 2026-02-09T19:31:51,455 Skipping link: No binaries permitted for graphein: https://files.pythonhosted.org/packages/b2/86/fd344b21c04767e04ac9a1f117733dce3e4c7acc916286bf46d711b255f4/graphein-1.7.1-py3-none-any.whl (from https://pypi.org/simple/graphein/) (requires-python:>=3.7) 2026-02-09T19:31:51,455 Found link https://files.pythonhosted.org/packages/38/21/ca09d5b0da007cb04324ca44812072a69f324089c548376d6fea64225ced/graphein-1.7.1.tar.gz (from https://pypi.org/simple/graphein/) (requires-python:>=3.7), version: 1.7.1 2026-02-09T19:31:51,456 Skipping link: No binaries permitted for graphein: https://files.pythonhosted.org/packages/2c/fa/2173d493dd9085eb33fc571f4d5e221e7011f13ef21282b9c07c9fab1c51/graphein-1.7.2-py3-none-any.whl (from https://pypi.org/simple/graphein/) (requires-python:>=3.7) 2026-02-09T19:31:51,457 Found link https://files.pythonhosted.org/packages/84/33/c97c738fd140abf661e4f697ad199c6daa109c6892c0928efb26dde23c5c/graphein-1.7.2.tar.gz (from https://pypi.org/simple/graphein/) (requires-python:>=3.7), version: 1.7.2 2026-02-09T19:31:51,457 Skipping link: No binaries permitted for graphein: https://files.pythonhosted.org/packages/3e/e5/13a75c55180ae616eec887bc27f16ef1e5c657417a407e8af3dbb6d18fa1/graphein-1.7.3-py3-none-any.whl (from https://pypi.org/simple/graphein/) (requires-python:>=3.7) 2026-02-09T19:31:51,458 Found link https://files.pythonhosted.org/packages/60/da/0176172d07ad8457528b13227c0facf44faf1ef94da3f64433b81c2728b9/graphein-1.7.3.tar.gz (from https://pypi.org/simple/graphein/) (requires-python:>=3.7), version: 1.7.3 2026-02-09T19:31:51,459 Skipping link: No binaries permitted for graphein: https://files.pythonhosted.org/packages/62/e4/da2fa735a1c1411dabc81979b0028c8251a49b9b6dadded2869f71d3a48b/graphein-1.7.4-py3-none-any.whl (from https://pypi.org/simple/graphein/) (requires-python:>=3.7) 2026-02-09T19:31:51,460 Found link https://files.pythonhosted.org/packages/8c/3b/1ba211a3e977822048504e2c4746c2c32af8cb57fd61a46a19f91b64bb90/graphein-1.7.4.tar.gz (from https://pypi.org/simple/graphein/) (requires-python:>=3.7), version: 1.7.4 2026-02-09T19:31:51,460 Skipping link: No binaries permitted for graphein: https://files.pythonhosted.org/packages/c9/a0/a5f4fbce63a6e3343d0587cd0e04de9fd360a2a5ab1ea64a74ffa1df8d05/graphein-1.7.5-py3-none-any.whl (from https://pypi.org/simple/graphein/) (requires-python:>=3.7) 2026-02-09T19:31:51,461 Found link https://files.pythonhosted.org/packages/74/52/acee292b3e83443beb191cbf27ad7d35a544171b90fd1a37aa50eca7b6d4/graphein-1.7.5.tar.gz (from https://pypi.org/simple/graphein/) (requires-python:>=3.7), version: 1.7.5 2026-02-09T19:31:51,462 Skipping link: No binaries permitted for graphein: https://files.pythonhosted.org/packages/7a/f5/ad17ab8c952601b2501c310f4710c04e79dc1b3e469ac7ecf6d27b94978b/graphein-1.7.6-py3-none-any.whl (from https://pypi.org/simple/graphein/) (requires-python:>=3.7) 2026-02-09T19:31:51,463 Found link https://files.pythonhosted.org/packages/24/92/744f91fa67216fdaa36648cedb2b3736cf6f3a8370c4b49a672bc87926b9/graphein-1.7.6.tar.gz (from https://pypi.org/simple/graphein/) (requires-python:>=3.7), version: 1.7.6 2026-02-09T19:31:51,464 Skipping link: No binaries permitted for graphein: https://files.pythonhosted.org/packages/70/5a/23be3e8d1bfbcb9dec698cfd18e208acc2f4864ff9f3b6ffb257c53eaf24/graphein-1.7.7-py3-none-any.whl (from https://pypi.org/simple/graphein/) (requires-python:>=3.7) 2026-02-09T19:31:51,465 Found link https://files.pythonhosted.org/packages/a8/f8/09b261b437a1a9a2c73a7e31fc3b128e713600e3046a828996409aafc46a/graphein-1.7.7.tar.gz (from https://pypi.org/simple/graphein/) (requires-python:>=3.7), version: 1.7.7 2026-02-09T19:31:51,465 Skipping link: No binaries permitted for graphein: https://files.pythonhosted.org/packages/d3/bf/33fdca9dc53195e8d6bcfa391c2204562ff4f856548d6c779d4a1fb7a268/graphein-1.7.8-py3-none-any.whl (from https://pypi.org/simple/graphein/) (requires-python:>=3.7) 2026-02-09T19:31:51,466 Found link https://files.pythonhosted.org/packages/8a/cb/d86a870869a5ded1f63817b79a4e6b8c77ee245b63ffd032047346024f18/graphein-1.7.8.tar.gz (from https://pypi.org/simple/graphein/) (requires-python:>=3.7), version: 1.7.8 2026-02-09T19:31:51,467 Fetching project page and analyzing links: https://www.piwheels.org/simple/graphein/ 2026-02-09T19:31:51,468 Getting page https://www.piwheels.org/simple/graphein/ 2026-02-09T19:31:51,469 Found index url https://www.piwheels.org/simple 2026-02-09T19:31:51,630 Fetched page https://www.piwheels.org/simple/graphein/ as text/html 2026-02-09T19:31:51,637 Skipping link: No binaries permitted for graphein: https://archive1.piwheels.org/simple/graphein/graphein-1.7.7-py3-none-any.whl#sha256=e9160320379e73b1f0904e4fa43c603cd04ff36103d38823d0e4cb313bb9dd13 (from https://www.piwheels.org/simple/graphein/) (requires-python:>=3.7) 2026-02-09T19:31:51,638 Skipping link: No binaries permitted for graphein: https://archive1.piwheels.org/simple/graphein/graphein-1.7.6-py3-none-any.whl#sha256=d7a882e02af1921d6d89feca31e366842e62b25c5bba5c523d2cd64b1fe585c4 (from https://www.piwheels.org/simple/graphein/) (requires-python:>=3.7) 2026-02-09T19:31:51,639 Skipping link: No binaries permitted for graphein: https://archive1.piwheels.org/simple/graphein/graphein-1.7.5-py3-none-any.whl#sha256=b0a923592708da89a88dcfaa66871043c474df1dad4733bb15d91527da2ef13b (from https://www.piwheels.org/simple/graphein/) (requires-python:>=3.7) 2026-02-09T19:31:51,639 Skipping link: No binaries permitted for graphein: https://archive1.piwheels.org/simple/graphein/graphein-1.7.4-py3-none-any.whl#sha256=c873862a327e015338e4d418c6c7ab809f1f733782e7010d6cf3d4ecc33ff35a (from https://www.piwheels.org/simple/graphein/) (requires-python:>=3.7) 2026-02-09T19:31:51,640 Skipping link: No binaries permitted for graphein: https://archive1.piwheels.org/simple/graphein/graphein-1.7.3-py3-none-any.whl#sha256=ade7464d09dbdd7f1b3284a5bff710b99b5dacc21b283929711f8ce902bdd147 (from https://www.piwheels.org/simple/graphein/) (requires-python:>=3.7) 2026-02-09T19:31:51,640 Skipping link: No binaries permitted for graphein: https://archive1.piwheels.org/simple/graphein/graphein-1.7.2-py3-none-any.whl#sha256=028c70d02c2a3905b4d2d6d445b2d4b08fc0b4b06667748f13e893cbe41bfad6 (from https://www.piwheels.org/simple/graphein/) (requires-python:>=3.7) 2026-02-09T19:31:51,641 Skipping link: No binaries permitted for graphein: https://archive1.piwheels.org/simple/graphein/graphein-1.7.1-py3-none-any.whl#sha256=8e86a4414758f740f81a962612da96bca0740ecd2ee3b65d79319e99ccae47c5 (from https://www.piwheels.org/simple/graphein/) (requires-python:>=3.7) 2026-02-09T19:31:51,641 Skipping link: No binaries permitted for graphein: https://archive1.piwheels.org/simple/graphein/graphein-1.7.0-py3-none-any.whl#sha256=5dd837d98c038df0016a5f919023c3979ed5828cc4e4ebbb8eec483fddee4629 (from https://www.piwheels.org/simple/graphein/) (requires-python:>=3.7) 2026-02-09T19:31:51,642 Skipping link: No binaries permitted for graphein: https://archive1.piwheels.org/simple/graphein/graphein-1.6.0-py3-none-any.whl#sha256=3c960d4d4f10122d6d9b1fa7355d9019fff3c182950431c6a3ce1dbebc53bec8 (from https://www.piwheels.org/simple/graphein/) (requires-python:>=3.7) 2026-02-09T19:31:51,643 Skipping link: No binaries permitted for graphein: https://archive1.piwheels.org/simple/graphein/graphein-1.5.2-py3-none-any.whl#sha256=bcefdab946088af523250c7d4c4c31b8c95a028539c0da708883d7d0a7d64082 (from https://www.piwheels.org/simple/graphein/) (requires-python:>=3.7) 2026-02-09T19:31:51,643 Skipping link: No binaries permitted for graphein: https://archive1.piwheels.org/simple/graphein/graphein-1.5.1-py3-none-any.whl#sha256=fd5be5dedc0de1a63d2b78478e30dd7a4a66ec7715e01bcce28d766c14dfcc8a (from https://www.piwheels.org/simple/graphein/) (requires-python:>=3.7) 2026-02-09T19:31:51,644 Skipping link: No binaries permitted for graphein: https://archive1.piwheels.org/simple/graphein/graphein-1.5.0-py3-none-any.whl#sha256=369fdfbb26c4024f794aea3e0ded6275bc3915a787cfcbc74cb616a205e47bc7 (from https://www.piwheels.org/simple/graphein/) (requires-python:>=3.7) 2026-02-09T19:31:51,644 Skipping link: No binaries permitted for graphein: https://archive1.piwheels.org/simple/graphein/graphein-1.5.0rc1-py3-none-any.whl#sha256=39c065073e4e319423a24c307778355037a6e01fec5105db0d004d9a2aaa4ee7 (from https://www.piwheels.org/simple/graphein/) (requires-python:>=3.7) 2026-02-09T19:31:51,645 Skipping link: No binaries permitted for graphein: https://archive1.piwheels.org/simple/graphein/graphein-1.4.0-py3-none-any.whl#sha256=47c9f1af8010e0630d84661c65cc864839c5b9de29efb6b87cba83f80baf3dd9 (from https://www.piwheels.org/simple/graphein/) (requires-python:>=3.7) 2026-02-09T19:31:51,645 Skipping link: No binaries permitted for graphein: https://archive1.piwheels.org/simple/graphein/graphein-1.3.0-py3-none-any.whl#sha256=3f3d8d40d7fe0e41321485c59beb446e1059c20230130f65e05f41f42a7f2cfd (from https://www.piwheels.org/simple/graphein/) (requires-python:>=3.7) 2026-02-09T19:31:51,646 Skipping link: No binaries permitted for graphein: https://archive1.piwheels.org/simple/graphein/graphein-1.2.1-py3-none-any.whl#sha256=64a567e969c56d176d660a920fbc594f8e57145381f0adc508aa8823eac9fbc5 (from https://www.piwheels.org/simple/graphein/) (requires-python:>=3.7) 2026-02-09T19:31:51,646 Skipping link: No binaries permitted for graphein: https://archive1.piwheels.org/simple/graphein/graphein-1.2.0-py3-none-any.whl#sha256=81d9684e0d94db3d9c119d3adec4d8eaf463035b61d81358a7840ddf2a3df274 (from https://www.piwheels.org/simple/graphein/) (requires-python:>=3.7) 2026-02-09T19:31:51,647 Skipping link: No binaries permitted for graphein: https://archive1.piwheels.org/simple/graphein/graphein-1.1.1-py3-none-any.whl#sha256=9d3678d7349525649efd7af810b18d5e580ca98f849f53af8a3d7a999f2dc989 (from https://www.piwheels.org/simple/graphein/) (requires-python:>=3.7) 2026-02-09T19:31:51,647 Skipping link: No binaries permitted for graphein: https://archive1.piwheels.org/simple/graphein/graphein-1.1.0-py3-none-any.whl#sha256=e4f90ee7406bd6ce50d7293f4d316ca12d47937c25b3d56f3d04eaabdafb7277 (from https://www.piwheels.org/simple/graphein/) (requires-python:>=3.7) 2026-02-09T19:31:51,648 Skipping link: No binaries permitted for graphein: https://archive1.piwheels.org/simple/graphein/graphein-1.0.11-py3-none-any.whl#sha256=c85e28c500dae9f61bef8c2b207a972cdcb7df71e664aab7554d9d1e626f7daa (from https://www.piwheels.org/simple/graphein/) (requires-python:>=3.7) 2026-02-09T19:31:51,649 Skipping link: No binaries permitted for graphein: https://archive1.piwheels.org/simple/graphein/graphein-1.0.10-py3-none-any.whl#sha256=679777e536b5a16495ac2832b91b51fb002948e550f85bba211c262d9309ea87 (from https://www.piwheels.org/simple/graphein/) (requires-python:>=3.8) 2026-02-09T19:31:51,649 Skipping link: No binaries permitted for graphein: https://archive1.piwheels.org/simple/graphein/graphein-1.0.9-py3-none-any.whl#sha256=6fb031e0ae5af3c2d5b89021e514dd634f60dfa16c110dc4f3b78106236357f1 (from https://www.piwheels.org/simple/graphein/) (requires-python:>=3.8) 2026-02-09T19:31:51,650 Skipping link: No binaries permitted for graphein: https://archive1.piwheels.org/simple/graphein/graphein-1.0.8-py3-none-any.whl#sha256=4513712c33b366001e166bedc7ec0ea9a10dfde0aa4745c7e94d154625da8108 (from https://www.piwheels.org/simple/graphein/) (requires-python:>=3.8) 2026-02-09T19:31:51,650 Skipping link: not a file: https://www.piwheels.org/simple/graphein/ 2026-02-09T19:31:51,651 Skipping link: not a file: https://pypi.org/simple/graphein/ 2026-02-09T19:31:51,673 Given no hashes to check 1 links for project 'graphein': discarding no candidates 2026-02-09T19:31:51,692 Collecting graphein==1.7.8 2026-02-09T19:31:51,694 Created temporary directory: /tmp/pip-unpack-tqxsaxw6 2026-02-09T19:31:51,832 Downloading graphein-1.7.8.tar.gz (264 kB) 2026-02-09T19:31:52,330 Added graphein==1.7.8 from https://files.pythonhosted.org/packages/8a/cb/d86a870869a5ded1f63817b79a4e6b8c77ee245b63ffd032047346024f18/graphein-1.7.8.tar.gz to build tracker '/tmp/pip-build-tracker-dzecefxr' 2026-02-09T19:31:52,336 Created temporary directory: /tmp/pip-build-env-0lw35ihj 2026-02-09T19:31:52,341 Installing build dependencies: started 2026-02-09T19:31:52,342 Running command pip subprocess to install build dependencies 2026-02-09T19:31:53,499 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-02-09T19:31:54,129 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-02-09T19:31:54,153 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-02-09T19:31:55,980 Collecting setuptools>=40.8.0 2026-02-09T19:31:55,999 Using cached setuptools-82.0.0-py3-none-any.whl (1.0 MB) 2026-02-09T19:31:56,274 Collecting wheel 2026-02-09T19:31:56,291 Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB) 2026-02-09T19:31:56,480 Collecting packaging>=24.0 2026-02-09T19:31:56,498 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-02-09T19:31:59,529 Installing collected packages: setuptools, packaging, wheel 2026-02-09T19:32:03,001 Creating /tmp/pip-build-env-0lw35ihj/overlay/local/bin 2026-02-09T19:32:03,003 changing mode of /tmp/pip-build-env-0lw35ihj/overlay/local/bin/wheel to 755 2026-02-09T19:32:03,023 Successfully installed packaging-26.0 setuptools-82.0.0 wheel-0.46.3 2026-02-09T19:32:03,300 Installing build dependencies: finished with status 'done' 2026-02-09T19:32:03,306 Getting requirements to build wheel: started 2026-02-09T19:32:03,308 Running command Getting requirements to build wheel 2026-02-09T19:32:03,946 /tmp/pip-build-env-0lw35ihj/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-02-09T19:32:03,947 !! 2026-02-09T19:32:03,948 ******************************************************************************** 2026-02-09T19:32:03,948 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-02-09T19:32:03,949 License :: OSI Approved :: MIT License 2026-02-09T19:32:03,950 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-09T19:32:03,951 ******************************************************************************** 2026-02-09T19:32:03,952 !! 2026-02-09T19:32:03,953 self._finalize_license_expression() 2026-02-09T19:32:03,972 {'all': {'biovec', 2026-02-09T19:32:03,972 'black', 2026-02-09T19:32:03,973 'einops', 2026-02-09T19:32:03,973 'flake8', 2026-02-09T19:32:03,974 'foldcomp', 2026-02-09T19:32:03,974 'hypothesis', 2026-02-09T19:32:03,975 'interrogate', 2026-02-09T19:32:03,975 'isort', 2026-02-09T19:32:03,975 'mpl_chord_diagram==0.3.2', 2026-02-09T19:32:03,976 'nbstripout', 2026-02-09T19:32:03,976 'nbval', 2026-02-09T19:32:03,977 'nest_asyncio', 2026-02-09T19:32:03,977 'pandoc', 2026-02-09T19:32:03,978 'pre-commit', 2026-02-09T19:32:03,978 'propy3', 2026-02-09T19:32:03,978 'pyaaisc', 2026-02-09T19:32:03,979 'pycodestyle', 2026-02-09T19:32:03,979 'pydocstyle', 2026-02-09T19:32:03,980 'pytest', 2026-02-09T19:32:03,980 'pytest-cov', 2026-02-09T19:32:03,981 'pytest-xdist', 2026-02-09T19:32:03,981 'rdkit', 2026-02-09T19:32:03,982 'selfies', 2026-02-09T19:32:03,982 'smilite'}, 2026-02-09T19:32:03,982 'dev': ['black', 2026-02-09T19:32:03,983 'flake8', 2026-02-09T19:32:03,983 'hypothesis', 2026-02-09T19:32:03,984 'interrogate', 2026-02-09T19:32:03,984 'isort', 2026-02-09T19:32:03,985 'nbstripout', 2026-02-09T19:32:03,985 'nbval', 2026-02-09T19:32:03,986 'pandoc', 2026-02-09T19:32:03,986 'pre-commit', 2026-02-09T19:32:03,987 'pycodestyle', 2026-02-09T19:32:03,987 'pydocstyle', 2026-02-09T19:32:03,988 'pytest', 2026-02-09T19:32:03,988 'pytest-cov', 2026-02-09T19:32:03,989 'pytest-xdist'], 2026-02-09T19:32:03,989 'extras': ['biovec', 2026-02-09T19:32:03,990 'propy3', 2026-02-09T19:32:03,991 'pyaaisc', 2026-02-09T19:32:03,991 'mpl_chord_diagram==0.3.2', 2026-02-09T19:32:03,992 'rdkit', 2026-02-09T19:32:03,992 'selfies', 2026-02-09T19:32:03,993 'smilite', 2026-02-09T19:32:03,993 'einops', 2026-02-09T19:32:03,994 'foldcomp', 2026-02-09T19:32:03,994 'nest_asyncio']} 2026-02-09T19:32:03,995 running egg_info 2026-02-09T19:32:03,996 writing graphein.egg-info/PKG-INFO 2026-02-09T19:32:03,997 writing dependency_links to graphein.egg-info/dependency_links.txt 2026-02-09T19:32:03,999 writing entry points to graphein.egg-info/entry_points.txt 2026-02-09T19:32:04,005 writing requirements to graphein.egg-info/requires.txt 2026-02-09T19:32:04,006 writing top-level names to graphein.egg-info/top_level.txt 2026-02-09T19:32:04,117 reading manifest file 'graphein.egg-info/SOURCES.txt' 2026-02-09T19:32:04,128 reading manifest template 'MANIFEST.in' 2026-02-09T19:32:04,130 adding license file 'LICENSE' 2026-02-09T19:32:04,139 writing manifest file 'graphein.egg-info/SOURCES.txt' 2026-02-09T19:32:04,229 Getting requirements to build wheel: finished with status 'done' 2026-02-09T19:32:04,233 Created temporary directory: /tmp/pip-modern-metadata-ew5_wm0q 2026-02-09T19:32:04,235 Preparing metadata (pyproject.toml): started 2026-02-09T19:32:04,236 Running command Preparing metadata (pyproject.toml) 2026-02-09T19:32:04,798 /tmp/pip-build-env-0lw35ihj/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-02-09T19:32:04,798 !! 2026-02-09T19:32:04,799 ******************************************************************************** 2026-02-09T19:32:04,800 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-02-09T19:32:04,801 License :: OSI Approved :: MIT License 2026-02-09T19:32:04,802 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-09T19:32:04,803 ******************************************************************************** 2026-02-09T19:32:04,805 !! 2026-02-09T19:32:04,805 self._finalize_license_expression() 2026-02-09T19:32:04,825 {'all': {'biovec', 2026-02-09T19:32:04,826 'black', 2026-02-09T19:32:04,826 'einops', 2026-02-09T19:32:04,827 'flake8', 2026-02-09T19:32:04,827 'foldcomp', 2026-02-09T19:32:04,828 'hypothesis', 2026-02-09T19:32:04,828 'interrogate', 2026-02-09T19:32:04,829 'isort', 2026-02-09T19:32:04,829 'mpl_chord_diagram==0.3.2', 2026-02-09T19:32:04,829 'nbstripout', 2026-02-09T19:32:04,830 'nbval', 2026-02-09T19:32:04,830 'nest_asyncio', 2026-02-09T19:32:04,831 'pandoc', 2026-02-09T19:32:04,831 'pre-commit', 2026-02-09T19:32:04,832 'propy3', 2026-02-09T19:32:04,832 'pyaaisc', 2026-02-09T19:32:04,833 'pycodestyle', 2026-02-09T19:32:04,833 'pydocstyle', 2026-02-09T19:32:04,834 'pytest', 2026-02-09T19:32:04,834 'pytest-cov', 2026-02-09T19:32:04,835 'pytest-xdist', 2026-02-09T19:32:04,835 'rdkit', 2026-02-09T19:32:04,835 'selfies', 2026-02-09T19:32:04,836 'smilite'}, 2026-02-09T19:32:04,836 'dev': ['black', 2026-02-09T19:32:04,837 'flake8', 2026-02-09T19:32:04,837 'hypothesis', 2026-02-09T19:32:04,838 'interrogate', 2026-02-09T19:32:04,838 'isort', 2026-02-09T19:32:04,839 'nbstripout', 2026-02-09T19:32:04,839 'nbval', 2026-02-09T19:32:04,840 'pandoc', 2026-02-09T19:32:04,840 'pre-commit', 2026-02-09T19:32:04,841 'pycodestyle', 2026-02-09T19:32:04,841 'pydocstyle', 2026-02-09T19:32:04,842 'pytest', 2026-02-09T19:32:04,842 'pytest-cov', 2026-02-09T19:32:04,843 'pytest-xdist'], 2026-02-09T19:32:04,843 'extras': ['biovec', 2026-02-09T19:32:04,844 'propy3', 2026-02-09T19:32:04,845 'pyaaisc', 2026-02-09T19:32:04,845 'mpl_chord_diagram==0.3.2', 2026-02-09T19:32:04,846 'rdkit', 2026-02-09T19:32:04,846 'selfies', 2026-02-09T19:32:04,847 'smilite', 2026-02-09T19:32:04,848 'einops', 2026-02-09T19:32:04,848 'foldcomp', 2026-02-09T19:32:04,849 'nest_asyncio']} 2026-02-09T19:32:04,849 running dist_info 2026-02-09T19:32:04,850 creating /tmp/pip-modern-metadata-ew5_wm0q/graphein.egg-info 2026-02-09T19:32:04,851 writing /tmp/pip-modern-metadata-ew5_wm0q/graphein.egg-info/PKG-INFO 2026-02-09T19:32:04,858 writing dependency_links to /tmp/pip-modern-metadata-ew5_wm0q/graphein.egg-info/dependency_links.txt 2026-02-09T19:32:04,859 writing entry points to /tmp/pip-modern-metadata-ew5_wm0q/graphein.egg-info/entry_points.txt 2026-02-09T19:32:04,866 writing requirements to /tmp/pip-modern-metadata-ew5_wm0q/graphein.egg-info/requires.txt 2026-02-09T19:32:04,867 writing top-level names to /tmp/pip-modern-metadata-ew5_wm0q/graphein.egg-info/top_level.txt 2026-02-09T19:32:04,868 writing manifest file '/tmp/pip-modern-metadata-ew5_wm0q/graphein.egg-info/SOURCES.txt' 2026-02-09T19:32:04,952 reading manifest file '/tmp/pip-modern-metadata-ew5_wm0q/graphein.egg-info/SOURCES.txt' 2026-02-09T19:32:04,954 reading manifest template 'MANIFEST.in' 2026-02-09T19:32:04,956 adding license file 'LICENSE' 2026-02-09T19:32:04,963 writing manifest file '/tmp/pip-modern-metadata-ew5_wm0q/graphein.egg-info/SOURCES.txt' 2026-02-09T19:32:04,964 creating '/tmp/pip-modern-metadata-ew5_wm0q/graphein-1.7.8.dist-info' 2026-02-09T19:32:05,092 Preparing metadata (pyproject.toml): finished with status 'done' 2026-02-09T19:32:05,099 Source in /tmp/pip-wheel-odmkhwdu/graphein_60c969bf009d40a782997f5a1a432b02 has version 1.7.8, which satisfies requirement graphein==1.7.8 from https://files.pythonhosted.org/packages/8a/cb/d86a870869a5ded1f63817b79a4e6b8c77ee245b63ffd032047346024f18/graphein-1.7.8.tar.gz 2026-02-09T19:32:05,100 Removed graphein==1.7.8 from https://files.pythonhosted.org/packages/8a/cb/d86a870869a5ded1f63817b79a4e6b8c77ee245b63ffd032047346024f18/graphein-1.7.8.tar.gz from build tracker '/tmp/pip-build-tracker-dzecefxr' 2026-02-09T19:32:05,109 Created temporary directory: /tmp/pip-unpack-0norijkx 2026-02-09T19:32:05,110 Building wheels for collected packages: graphein 2026-02-09T19:32:05,114 Created temporary directory: /tmp/pip-wheel-voncumzh 2026-02-09T19:32:05,115 Destination directory: /tmp/pip-wheel-voncumzh 2026-02-09T19:32:05,117 Building wheel for graphein (pyproject.toml): started 2026-02-09T19:32:05,118 Running command Building wheel for graphein (pyproject.toml) 2026-02-09T19:32:05,675 /tmp/pip-build-env-0lw35ihj/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-02-09T19:32:05,675 !! 2026-02-09T19:32:05,676 ******************************************************************************** 2026-02-09T19:32:05,677 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-02-09T19:32:05,678 License :: OSI Approved :: MIT License 2026-02-09T19:32:05,679 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-09T19:32:05,679 ******************************************************************************** 2026-02-09T19:32:05,680 !! 2026-02-09T19:32:05,680 self._finalize_license_expression() 2026-02-09T19:32:05,702 {'all': {'biovec', 2026-02-09T19:32:05,703 'black', 2026-02-09T19:32:05,703 'einops', 2026-02-09T19:32:05,704 'flake8', 2026-02-09T19:32:05,704 'foldcomp', 2026-02-09T19:32:05,705 'hypothesis', 2026-02-09T19:32:05,706 'interrogate', 2026-02-09T19:32:05,706 'isort', 2026-02-09T19:32:05,707 'mpl_chord_diagram==0.3.2', 2026-02-09T19:32:05,708 'nbstripout', 2026-02-09T19:32:05,708 'nbval', 2026-02-09T19:32:05,709 'nest_asyncio', 2026-02-09T19:32:05,709 'pandoc', 2026-02-09T19:32:05,710 'pre-commit', 2026-02-09T19:32:05,710 'propy3', 2026-02-09T19:32:05,711 'pyaaisc', 2026-02-09T19:32:05,711 'pycodestyle', 2026-02-09T19:32:05,711 'pydocstyle', 2026-02-09T19:32:05,712 'pytest', 2026-02-09T19:32:05,712 'pytest-cov', 2026-02-09T19:32:05,713 'pytest-xdist', 2026-02-09T19:32:05,714 'rdkit', 2026-02-09T19:32:05,714 'selfies', 2026-02-09T19:32:05,715 'smilite'}, 2026-02-09T19:32:05,715 'dev': ['black', 2026-02-09T19:32:05,716 'flake8', 2026-02-09T19:32:05,716 'hypothesis', 2026-02-09T19:32:05,717 'interrogate', 2026-02-09T19:32:05,717 'isort', 2026-02-09T19:32:05,718 'nbstripout', 2026-02-09T19:32:05,719 'nbval', 2026-02-09T19:32:05,719 'pandoc', 2026-02-09T19:32:05,720 'pre-commit', 2026-02-09T19:32:05,720 'pycodestyle', 2026-02-09T19:32:05,721 'pydocstyle', 2026-02-09T19:32:05,721 'pytest', 2026-02-09T19:32:05,721 'pytest-cov', 2026-02-09T19:32:05,722 'pytest-xdist'], 2026-02-09T19:32:05,723 'extras': ['biovec', 2026-02-09T19:32:05,723 'propy3', 2026-02-09T19:32:05,724 'pyaaisc', 2026-02-09T19:32:05,724 'mpl_chord_diagram==0.3.2', 2026-02-09T19:32:05,725 'rdkit', 2026-02-09T19:32:05,725 'selfies', 2026-02-09T19:32:05,726 'smilite', 2026-02-09T19:32:05,726 'einops', 2026-02-09T19:32:05,727 'foldcomp', 2026-02-09T19:32:05,727 'nest_asyncio']} 2026-02-09T19:32:05,728 running bdist_wheel 2026-02-09T19:32:05,734 running build 2026-02-09T19:32:05,735 running build_py 2026-02-09T19:32:05,744 creating build/lib/graphein 2026-02-09T19:32:05,746 copying graphein/__init__.py -> build/lib/graphein 2026-02-09T19:32:05,748 copying graphein/cli.py -> build/lib/graphein 2026-02-09T19:32:05,751 creating build/lib/tests 2026-02-09T19:32:05,752 copying tests/__init__.py -> build/lib/tests 2026-02-09T19:32:05,753 copying tests/conftest.py -> build/lib/tests 2026-02-09T19:32:05,755 copying tests/test_graphein.py -> build/lib/tests 2026-02-09T19:32:05,757 creating build/lib/graphein/protein 2026-02-09T19:32:05,758 copying graphein/protein/__init__.py -> build/lib/graphein/protein 2026-02-09T19:32:05,760 copying graphein/protein/config.py -> build/lib/graphein/protein 2026-02-09T19:32:05,762 copying graphein/protein/subgraphs.py -> build/lib/graphein/protein 2026-02-09T19:32:05,765 copying graphein/protein/resi_atoms.py -> build/lib/graphein/protein 2026-02-09T19:32:05,768 copying graphein/protein/visualisation.py -> build/lib/graphein/protein 2026-02-09T19:32:05,771 copying graphein/protein/meshes.py -> build/lib/graphein/protein 2026-02-09T19:32:05,773 copying graphein/protein/analysis.py -> build/lib/graphein/protein 2026-02-09T19:32:05,775 copying graphein/protein/utils.py -> build/lib/graphein/protein 2026-02-09T19:32:05,778 copying graphein/protein/graphs.py -> build/lib/graphein/protein 2026-02-09T19:32:05,781 copying graphein/protein/folding_utils.py -> build/lib/graphein/protein 2026-02-09T19:32:05,783 creating build/lib/graphein/molecule 2026-02-09T19:32:05,784 copying graphein/molecule/__init__.py -> build/lib/graphein/molecule 2026-02-09T19:32:05,786 copying graphein/molecule/config.py -> build/lib/graphein/molecule 2026-02-09T19:32:05,788 copying graphein/molecule/chembl.py -> build/lib/graphein/molecule 2026-02-09T19:32:05,790 copying graphein/molecule/atoms.py -> build/lib/graphein/molecule 2026-02-09T19:32:05,792 copying graphein/molecule/zinc.py -> build/lib/graphein/molecule 2026-02-09T19:32:05,794 copying graphein/molecule/visualisation.py -> build/lib/graphein/molecule 2026-02-09T19:32:05,796 copying graphein/molecule/utils.py -> build/lib/graphein/molecule 2026-02-09T19:32:05,799 copying graphein/molecule/graphs.py -> build/lib/graphein/molecule 2026-02-09T19:32:05,802 creating build/lib/graphein/rna 2026-02-09T19:32:05,803 copying graphein/rna/__init__.py -> build/lib/graphein/rna 2026-02-09T19:32:05,804 copying graphein/rna/config.py -> build/lib/graphein/rna 2026-02-09T19:32:05,806 copying graphein/rna/nussinov.py -> build/lib/graphein/rna 2026-02-09T19:32:05,809 copying graphein/rna/subgraphs.py -> build/lib/graphein/rna 2026-02-09T19:32:05,811 copying graphein/rna/visualisation.py -> build/lib/graphein/rna 2026-02-09T19:32:05,813 copying graphein/rna/constants.py -> build/lib/graphein/rna 2026-02-09T19:32:05,815 copying graphein/rna/utils.py -> build/lib/graphein/rna 2026-02-09T19:32:05,817 copying graphein/rna/graphs.py -> build/lib/graphein/rna 2026-02-09T19:32:05,820 creating build/lib/graphein/testing 2026-02-09T19:32:05,821 copying graphein/testing/__init__.py -> build/lib/graphein/testing 2026-02-09T19:32:05,823 copying graphein/testing/utils.py -> build/lib/graphein/testing 2026-02-09T19:32:05,826 creating build/lib/graphein/ppi 2026-02-09T19:32:05,827 copying graphein/ppi/parse_biogrid.py -> build/lib/graphein/ppi 2026-02-09T19:32:05,829 copying graphein/ppi/__init__.py -> build/lib/graphein/ppi 2026-02-09T19:32:05,831 copying graphein/ppi/edges.py -> build/lib/graphein/ppi 2026-02-09T19:32:05,832 copying graphein/ppi/config.py -> build/lib/graphein/ppi 2026-02-09T19:32:05,835 copying graphein/ppi/graph_metadata.py -> build/lib/graphein/ppi 2026-02-09T19:32:05,837 copying graphein/ppi/visualisation.py -> build/lib/graphein/ppi 2026-02-09T19:32:05,839 copying graphein/ppi/parse_stringdb.py -> build/lib/graphein/ppi 2026-02-09T19:32:05,842 copying graphein/ppi/graphs.py -> build/lib/graphein/ppi 2026-02-09T19:32:05,844 creating build/lib/graphein/utils 2026-02-09T19:32:05,845 copying graphein/utils/__init__.py -> build/lib/graphein/utils 2026-02-09T19:32:05,847 copying graphein/utils/dependencies.py -> build/lib/graphein/utils 2026-02-09T19:32:05,849 copying graphein/utils/config.py -> build/lib/graphein/utils 2026-02-09T19:32:05,851 copying graphein/utils/config_parser.py -> build/lib/graphein/utils 2026-02-09T19:32:05,853 copying graphein/utils/utils.py -> build/lib/graphein/utils 2026-02-09T19:32:05,856 creating build/lib/graphein/grn 2026-02-09T19:32:05,856 copying graphein/grn/parse_trrust.py -> build/lib/graphein/grn 2026-02-09T19:32:05,859 copying graphein/grn/__init__.py -> build/lib/graphein/grn 2026-02-09T19:32:05,860 copying graphein/grn/edges.py -> build/lib/graphein/grn 2026-02-09T19:32:05,862 copying graphein/grn/config.py -> build/lib/graphein/grn 2026-02-09T19:32:05,864 copying graphein/grn/graphs.py -> build/lib/graphein/grn 2026-02-09T19:32:05,866 copying graphein/grn/parse_regnetwork.py -> build/lib/graphein/grn 2026-02-09T19:32:05,869 creating build/lib/graphein/ml 2026-02-09T19:32:05,870 copying graphein/ml/__init__.py -> build/lib/graphein/ml 2026-02-09T19:32:05,871 copying graphein/ml/visualisation.py -> build/lib/graphein/ml 2026-02-09T19:32:05,874 copying graphein/ml/conversion.py -> build/lib/graphein/ml 2026-02-09T19:32:05,876 copying graphein/ml/clustering.py -> build/lib/graphein/ml 2026-02-09T19:32:05,879 copying graphein/ml/utils.py -> build/lib/graphein/ml 2026-02-09T19:32:05,881 copying graphein/ml/diffusion.py -> build/lib/graphein/ml 2026-02-09T19:32:05,883 creating build/lib/graphein/protein/features 2026-02-09T19:32:05,884 copying graphein/protein/features/__init__.py -> build/lib/graphein/protein/features 2026-02-09T19:32:05,885 copying graphein/protein/features/utils.py -> build/lib/graphein/protein/features 2026-02-09T19:32:05,888 creating build/lib/graphein/protein/tensor 2026-02-09T19:32:05,889 copying graphein/protein/tensor/reconstruction.py -> build/lib/graphein/protein/tensor 2026-02-09T19:32:05,891 copying graphein/protein/tensor/dataloader.py -> build/lib/graphein/protein/tensor 2026-02-09T19:32:05,893 copying graphein/protein/tensor/__init__.py -> build/lib/graphein/protein/tensor 2026-02-09T19:32:05,895 copying graphein/protein/tensor/sequence.py -> build/lib/graphein/protein/tensor 2026-02-09T19:32:05,898 copying graphein/protein/tensor/data.py -> build/lib/graphein/protein/tensor 2026-02-09T19:32:05,901 copying graphein/protein/tensor/edges.py -> build/lib/graphein/protein/tensor 2026-02-09T19:32:05,903 copying graphein/protein/tensor/angles.py -> build/lib/graphein/protein/tensor 2026-02-09T19:32:05,906 copying graphein/protein/tensor/pnerf.py -> build/lib/graphein/protein/tensor 2026-02-09T19:32:05,908 copying graphein/protein/tensor/plot.py -> build/lib/graphein/protein/tensor 2026-02-09T19:32:05,910 copying graphein/protein/tensor/representation.py -> build/lib/graphein/protein/tensor 2026-02-09T19:32:05,912 copying graphein/protein/tensor/io.py -> build/lib/graphein/protein/tensor 2026-02-09T19:32:05,915 copying graphein/protein/tensor/types.py -> build/lib/graphein/protein/tensor 2026-02-09T19:32:05,917 copying graphein/protein/tensor/dataset.py -> build/lib/graphein/protein/tensor 2026-02-09T19:32:05,920 copying graphein/protein/tensor/geometry.py -> build/lib/graphein/protein/tensor 2026-02-09T19:32:05,923 copying graphein/protein/tensor/testing.py -> build/lib/graphein/protein/tensor 2026-02-09T19:32:05,925 creating build/lib/graphein/protein/edges 2026-02-09T19:32:05,926 copying graphein/protein/edges/__init__.py -> build/lib/graphein/protein/edges 2026-02-09T19:32:05,928 copying graphein/protein/edges/distance.py -> build/lib/graphein/protein/edges 2026-02-09T19:32:05,931 copying graphein/protein/edges/intramolecular.py -> build/lib/graphein/protein/edges 2026-02-09T19:32:05,933 copying graphein/protein/edges/atomic.py -> build/lib/graphein/protein/edges 2026-02-09T19:32:05,936 creating build/lib/graphein/protein/features/graph 2026-02-09T19:32:05,937 copying graphein/protein/features/graph/dynamics.py -> build/lib/graphein/protein/features/graph 2026-02-09T19:32:05,939 copying graphein/protein/features/graph/__init__.py -> build/lib/graphein/protein/features/graph 2026-02-09T19:32:05,941 copying graphein/protein/features/graph/structure.py -> build/lib/graphein/protein/features/graph 2026-02-09T19:32:05,943 creating build/lib/graphein/protein/features/sequence 2026-02-09T19:32:05,944 copying graphein/protein/features/sequence/propy.py -> build/lib/graphein/protein/features/sequence 2026-02-09T19:32:05,947 copying graphein/protein/features/sequence/__init__.py -> build/lib/graphein/protein/features/sequence 2026-02-09T19:32:05,949 copying graphein/protein/features/sequence/sequence.py -> build/lib/graphein/protein/features/sequence 2026-02-09T19:32:05,951 copying graphein/protein/features/sequence/embeddings.py -> build/lib/graphein/protein/features/sequence 2026-02-09T19:32:05,953 copying graphein/protein/features/sequence/utils.py -> build/lib/graphein/protein/features/sequence 2026-02-09T19:32:05,956 creating build/lib/graphein/protein/features/data 2026-02-09T19:32:05,957 copying graphein/protein/features/data/__init__.py -> build/lib/graphein/protein/features/data 2026-02-09T19:32:05,959 creating build/lib/graphein/protein/features/nodes 2026-02-09T19:32:05,960 copying graphein/protein/features/nodes/__init__.py -> build/lib/graphein/protein/features/nodes 2026-02-09T19:32:05,962 copying graphein/protein/features/nodes/dssp.py -> build/lib/graphein/protein/features/nodes 2026-02-09T19:32:05,964 copying graphein/protein/features/nodes/amino_acid.py -> build/lib/graphein/protein/features/nodes 2026-02-09T19:32:05,966 copying graphein/protein/features/nodes/geometry.py -> build/lib/graphein/protein/features/nodes 2026-02-09T19:32:05,968 copying graphein/protein/features/nodes/aaindex.py -> build/lib/graphein/protein/features/nodes 2026-02-09T19:32:05,971 creating build/lib/graphein/protein/features/pretrained_models 2026-02-09T19:32:05,972 copying graphein/protein/features/pretrained_models/__init__.py -> build/lib/graphein/protein/features/pretrained_models 2026-02-09T19:32:05,974 creating build/lib/graphein/molecule/features 2026-02-09T19:32:05,975 copying graphein/molecule/features/__init__.py -> build/lib/graphein/molecule/features 2026-02-09T19:32:05,977 creating build/lib/graphein/molecule/edges 2026-02-09T19:32:05,978 copying graphein/molecule/edges/__init__.py -> build/lib/graphein/molecule/edges 2026-02-09T19:32:05,980 copying graphein/molecule/edges/distance.py -> build/lib/graphein/molecule/edges 2026-02-09T19:32:05,983 copying graphein/molecule/edges/atomic.py -> build/lib/graphein/molecule/edges 2026-02-09T19:32:05,985 creating build/lib/graphein/molecule/features/graph 2026-02-09T19:32:05,986 copying graphein/molecule/features/graph/molecule.py -> build/lib/graphein/molecule/features/graph 2026-02-09T19:32:05,988 copying graphein/molecule/features/graph/__init__.py -> build/lib/graphein/molecule/features/graph 2026-02-09T19:32:05,991 creating build/lib/graphein/molecule/features/nodes 2026-02-09T19:32:05,992 copying graphein/molecule/features/nodes/__init__.py -> build/lib/graphein/molecule/features/nodes 2026-02-09T19:32:05,994 copying graphein/molecule/features/nodes/atom_type.py -> build/lib/graphein/molecule/features/nodes 2026-02-09T19:32:05,997 creating build/lib/graphein/molecule/features/edges 2026-02-09T19:32:05,998 copying graphein/molecule/features/edges/__init__.py -> build/lib/graphein/molecule/features/edges 2026-02-09T19:32:06,000 copying graphein/molecule/features/edges/bonds.py -> build/lib/graphein/molecule/features/edges 2026-02-09T19:32:06,002 creating build/lib/graphein/rna/features 2026-02-09T19:32:06,003 copying graphein/rna/features/__init__.py -> build/lib/graphein/rna/features 2026-02-09T19:32:06,005 copying graphein/rna/features/atom.py -> build/lib/graphein/rna/features 2026-02-09T19:32:06,007 creating build/lib/graphein/rna/edges 2026-02-09T19:32:06,008 copying graphein/rna/edges/__init__.py -> build/lib/graphein/rna/edges 2026-02-09T19:32:06,010 copying graphein/rna/edges/distance.py -> build/lib/graphein/rna/edges 2026-02-09T19:32:06,012 copying graphein/rna/edges/base_pairing.py -> build/lib/graphein/rna/edges 2026-02-09T19:32:06,014 copying graphein/rna/edges/atomic.py -> build/lib/graphein/rna/edges 2026-02-09T19:32:06,017 creating build/lib/graphein/ppi/features 2026-02-09T19:32:06,018 copying graphein/ppi/features/__init__.py -> build/lib/graphein/ppi/features 2026-02-09T19:32:06,019 copying graphein/ppi/features/node_features.py -> build/lib/graphein/ppi/features 2026-02-09T19:32:06,021 creating build/lib/graphein/utils/pymol 2026-02-09T19:32:06,022 copying graphein/utils/pymol/__init__.py -> build/lib/graphein/utils/pymol 2026-02-09T19:32:06,024 copying graphein/utils/pymol/core.py -> build/lib/graphein/utils/pymol 2026-02-09T19:32:06,026 copying graphein/utils/pymol/compat.py -> build/lib/graphein/utils/pymol 2026-02-09T19:32:06,028 creating build/lib/graphein/grn/features 2026-02-09T19:32:06,029 copying graphein/grn/features/__init__.py -> build/lib/graphein/grn/features 2026-02-09T19:32:06,031 copying graphein/grn/features/node_features.py -> build/lib/graphein/grn/features 2026-02-09T19:32:06,034 creating build/lib/graphein/ml/metrics 2026-02-09T19:32:06,035 copying graphein/ml/metrics/gdt.py -> build/lib/graphein/ml/metrics 2026-02-09T19:32:06,038 copying graphein/ml/metrics/tm_score.py -> build/lib/graphein/ml/metrics 2026-02-09T19:32:06,041 copying graphein/ml/metrics/__init__.py -> build/lib/graphein/ml/metrics 2026-02-09T19:32:06,043 creating build/lib/graphein/ml/datasets 2026-02-09T19:32:06,044 copying graphein/ml/datasets/foldcomp_dataset.py -> build/lib/graphein/ml/datasets 2026-02-09T19:32:06,047 copying graphein/ml/datasets/__init__.py -> build/lib/graphein/ml/datasets 2026-02-09T19:32:06,049 copying graphein/ml/datasets/torch_geometric_dataset.py -> build/lib/graphein/ml/datasets 2026-02-09T19:32:06,052 copying graphein/ml/datasets/pdb_data.py -> build/lib/graphein/ml/datasets 2026-02-09T19:32:06,056 creating build/lib/tests/protein 2026-02-09T19:32:06,057 copying tests/protein/test_utils.py -> build/lib/tests/protein 2026-02-09T19:32:06,059 copying tests/protein/__init__.py -> build/lib/tests/protein 2026-02-09T19:32:06,060 copying tests/protein/test_graphs.py -> build/lib/tests/protein 2026-02-09T19:32:06,063 copying tests/protein/test_subgraphs.py -> build/lib/tests/protein 2026-02-09T19:32:06,066 creating build/lib/tests/rna 2026-02-09T19:32:06,067 copying tests/rna/__init__.py -> build/lib/tests/rna 2026-02-09T19:32:06,069 copying tests/rna/test_graphs.py -> build/lib/tests/rna 2026-02-09T19:32:06,071 copying tests/rna/test_subgraphs.py -> build/lib/tests/rna 2026-02-09T19:32:06,073 copying tests/rna/test_nussinov.py -> build/lib/tests/rna 2026-02-09T19:32:06,075 creating build/lib/tests/testing 2026-02-09T19:32:06,076 copying tests/testing/__init__.py -> build/lib/tests/testing 2026-02-09T19:32:06,078 copying tests/testing/utils.py -> build/lib/tests/testing 2026-02-09T19:32:06,080 creating build/lib/tests/datasets 2026-02-09T19:32:06,081 copying tests/datasets/__init__.py -> build/lib/tests/datasets 2026-02-09T19:32:06,083 copying tests/datasets/pdb_data.py -> build/lib/tests/datasets 2026-02-09T19:32:06,086 creating build/lib/tests/ppi 2026-02-09T19:32:06,087 copying tests/ppi/__init__.py -> build/lib/tests/ppi 2026-02-09T19:32:06,088 copying tests/ppi/test_graphs.py -> build/lib/tests/ppi 2026-02-09T19:32:06,091 creating build/lib/tests/utils 2026-02-09T19:32:06,092 copying tests/utils/test_yml_parser.py -> build/lib/tests/utils 2026-02-09T19:32:06,094 copying tests/utils/__init__.py -> build/lib/tests/utils 2026-02-09T19:32:06,096 copying tests/utils/test_cli.py -> build/lib/tests/utils 2026-02-09T19:32:06,098 creating build/lib/tests/grn 2026-02-09T19:32:06,099 copying tests/grn/__init__.py -> build/lib/tests/grn 2026-02-09T19:32:06,100 copying tests/grn/test_graphs.py -> build/lib/tests/grn 2026-02-09T19:32:06,103 creating build/lib/tests/ml 2026-02-09T19:32:06,104 copying tests/ml/test_conversion.py -> build/lib/tests/ml 2026-02-09T19:32:06,106 copying tests/ml/__init__.py -> build/lib/tests/ml 2026-02-09T19:32:06,107 copying tests/ml/test_torch_geometric_dataset.py -> build/lib/tests/ml 2026-02-09T19:32:06,110 creating build/lib/tests/protein/nodes 2026-02-09T19:32:06,110 copying tests/protein/nodes/__init__.py -> build/lib/tests/protein/nodes 2026-02-09T19:32:06,113 creating build/lib/tests/protein/tensor 2026-02-09T19:32:06,114 copying tests/protein/tensor/test_io.py -> build/lib/tests/protein/tensor 2026-02-09T19:32:06,116 copying tests/protein/tensor/__init__.py -> build/lib/tests/protein/tensor 2026-02-09T19:32:06,117 copying tests/protein/tensor/test_reconstruction.py -> build/lib/tests/protein/tensor 2026-02-09T19:32:06,119 copying tests/protein/tensor/test_sequence.py -> build/lib/tests/protein/tensor 2026-02-09T19:32:06,121 copying tests/protein/tensor/test_data.py -> build/lib/tests/protein/tensor 2026-02-09T19:32:06,123 copying tests/protein/tensor/test_angles.py -> build/lib/tests/protein/tensor 2026-02-09T19:32:06,125 copying tests/protein/tensor/test_geometry.py -> build/lib/tests/protein/tensor 2026-02-09T19:32:06,127 copying tests/protein/tensor/test_representation.py -> build/lib/tests/protein/tensor 2026-02-09T19:32:06,129 creating build/lib/tests/protein/edges 2026-02-09T19:32:06,130 copying tests/protein/edges/__init__.py -> build/lib/tests/protein/edges 2026-02-09T19:32:06,132 copying tests/protein/edges/test_distance.py -> build/lib/tests/protein/edges 2026-02-09T19:32:06,135 creating build/lib/tests/protein/nodes/features 2026-02-09T19:32:06,136 copying tests/protein/nodes/features/__init__.py -> build/lib/tests/protein/nodes/features 2026-02-09T19:32:06,138 copying tests/protein/nodes/features/test_dssp.py -> build/lib/tests/protein/nodes/features 2026-02-09T19:32:06,140 copying tests/protein/nodes/features/test_geometry.py -> build/lib/tests/protein/nodes/features 2026-02-09T19:32:06,142 copying tests/protein/nodes/features/test_amino_acid.py -> build/lib/tests/protein/nodes/features 2026-02-09T19:32:06,145 running egg_info 2026-02-09T19:32:06,156 writing graphein.egg-info/PKG-INFO 2026-02-09T19:32:06,172 writing dependency_links to graphein.egg-info/dependency_links.txt 2026-02-09T19:32:06,173 writing entry points to graphein.egg-info/entry_points.txt 2026-02-09T19:32:06,179 writing requirements to graphein.egg-info/requires.txt 2026-02-09T19:32:06,180 writing top-level names to graphein.egg-info/top_level.txt 2026-02-09T19:32:06,242 reading manifest file 'graphein.egg-info/SOURCES.txt' 2026-02-09T19:32:06,253 reading manifest template 'MANIFEST.in' 2026-02-09T19:32:06,254 adding license file 'LICENSE' 2026-02-09T19:32:06,264 writing manifest file 'graphein.egg-info/SOURCES.txt' 2026-02-09T19:32:06,303 copying graphein/protein/features/nodes/amino_acid_properties.csv -> build/lib/graphein/protein/features/nodes 2026-02-09T19:32:06,305 copying graphein/protein/features/nodes/meiler_embeddings.csv -> build/lib/graphein/protein/features/nodes 2026-02-09T19:32:06,337 installing to build/bdist.linux-armv7l/wheel 2026-02-09T19:32:06,338 running install 2026-02-09T19:32:06,361 running install_lib 2026-02-09T19:32:06,369 creating build/bdist.linux-armv7l/wheel 2026-02-09T19:32:06,372 creating build/bdist.linux-armv7l/wheel/graphein 2026-02-09T19:32:06,374 creating build/bdist.linux-armv7l/wheel/graphein/protein 2026-02-09T19:32:06,375 copying build/lib/graphein/protein/__init__.py -> build/bdist.linux-armv7l/wheel/./graphein/protein 2026-02-09T19:32:06,377 copying build/lib/graphein/protein/config.py -> build/bdist.linux-armv7l/wheel/./graphein/protein 2026-02-09T19:32:06,379 copying build/lib/graphein/protein/subgraphs.py -> build/bdist.linux-armv7l/wheel/./graphein/protein 2026-02-09T19:32:06,383 copying build/lib/graphein/protein/resi_atoms.py -> build/bdist.linux-armv7l/wheel/./graphein/protein 2026-02-09T19:32:06,386 copying build/lib/graphein/protein/visualisation.py -> build/bdist.linux-armv7l/wheel/./graphein/protein 2026-02-09T19:32:06,390 creating build/bdist.linux-armv7l/wheel/graphein/protein/features 2026-02-09T19:32:06,392 creating build/bdist.linux-armv7l/wheel/graphein/protein/features/graph 2026-02-09T19:32:06,394 copying build/lib/graphein/protein/features/graph/dynamics.py -> build/bdist.linux-armv7l/wheel/./graphein/protein/features/graph 2026-02-09T19:32:06,396 copying build/lib/graphein/protein/features/graph/__init__.py -> build/bdist.linux-armv7l/wheel/./graphein/protein/features/graph 2026-02-09T19:32:06,398 copying build/lib/graphein/protein/features/graph/structure.py -> build/bdist.linux-armv7l/wheel/./graphein/protein/features/graph 2026-02-09T19:32:06,400 copying build/lib/graphein/protein/features/__init__.py -> build/bdist.linux-armv7l/wheel/./graphein/protein/features 2026-02-09T19:32:06,402 creating build/bdist.linux-armv7l/wheel/graphein/protein/features/sequence 2026-02-09T19:32:06,404 copying build/lib/graphein/protein/features/sequence/propy.py -> build/bdist.linux-armv7l/wheel/./graphein/protein/features/sequence 2026-02-09T19:32:06,407 copying build/lib/graphein/protein/features/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/./graphein/protein/features/sequence 2026-02-09T19:32:06,409 copying build/lib/graphein/protein/features/sequence/sequence.py -> build/bdist.linux-armv7l/wheel/./graphein/protein/features/sequence 2026-02-09T19:32:06,411 copying build/lib/graphein/protein/features/sequence/embeddings.py -> build/bdist.linux-armv7l/wheel/./graphein/protein/features/sequence 2026-02-09T19:32:06,414 copying build/lib/graphein/protein/features/sequence/utils.py -> build/bdist.linux-armv7l/wheel/./graphein/protein/features/sequence 2026-02-09T19:32:06,417 creating build/bdist.linux-armv7l/wheel/graphein/protein/features/data 2026-02-09T19:32:06,419 copying build/lib/graphein/protein/features/data/__init__.py -> build/bdist.linux-armv7l/wheel/./graphein/protein/features/data 2026-02-09T19:32:06,422 creating build/bdist.linux-armv7l/wheel/graphein/protein/features/nodes 2026-02-09T19:32:06,423 copying build/lib/graphein/protein/features/nodes/__init__.py -> build/bdist.linux-armv7l/wheel/./graphein/protein/features/nodes 2026-02-09T19:32:06,425 copying build/lib/graphein/protein/features/nodes/dssp.py -> build/bdist.linux-armv7l/wheel/./graphein/protein/features/nodes 2026-02-09T19:32:06,428 copying build/lib/graphein/protein/features/nodes/meiler_embeddings.csv -> build/bdist.linux-armv7l/wheel/./graphein/protein/features/nodes 2026-02-09T19:32:06,430 copying build/lib/graphein/protein/features/nodes/amino_acid.py -> build/bdist.linux-armv7l/wheel/./graphein/protein/features/nodes 2026-02-09T19:32:06,433 copying build/lib/graphein/protein/features/nodes/amino_acid_properties.csv -> build/bdist.linux-armv7l/wheel/./graphein/protein/features/nodes 2026-02-09T19:32:06,435 copying build/lib/graphein/protein/features/nodes/geometry.py -> build/bdist.linux-armv7l/wheel/./graphein/protein/features/nodes 2026-02-09T19:32:06,438 copying build/lib/graphein/protein/features/nodes/aaindex.py -> build/bdist.linux-armv7l/wheel/./graphein/protein/features/nodes 2026-02-09T19:32:06,441 creating build/bdist.linux-armv7l/wheel/graphein/protein/features/pretrained_models 2026-02-09T19:32:06,443 copying build/lib/graphein/protein/features/pretrained_models/__init__.py -> build/bdist.linux-armv7l/wheel/./graphein/protein/features/pretrained_models 2026-02-09T19:32:06,445 copying build/lib/graphein/protein/features/utils.py -> build/bdist.linux-armv7l/wheel/./graphein/protein/features 2026-02-09T19:32:06,447 copying build/lib/graphein/protein/meshes.py -> build/bdist.linux-armv7l/wheel/./graphein/protein 2026-02-09T19:32:06,450 copying build/lib/graphein/protein/analysis.py -> build/bdist.linux-armv7l/wheel/./graphein/protein 2026-02-09T19:32:06,454 creating build/bdist.linux-armv7l/wheel/graphein/protein/tensor 2026-02-09T19:32:06,455 copying build/lib/graphein/protein/tensor/reconstruction.py -> build/bdist.linux-armv7l/wheel/./graphein/protein/tensor 2026-02-09T19:32:06,459 copying build/lib/graphein/protein/tensor/dataloader.py -> build/bdist.linux-armv7l/wheel/./graphein/protein/tensor 2026-02-09T19:32:06,461 copying build/lib/graphein/protein/tensor/__init__.py -> build/bdist.linux-armv7l/wheel/./graphein/protein/tensor 2026-02-09T19:32:06,463 copying build/lib/graphein/protein/tensor/sequence.py -> build/bdist.linux-armv7l/wheel/./graphein/protein/tensor 2026-02-09T19:32:06,465 copying build/lib/graphein/protein/tensor/data.py -> build/bdist.linux-armv7l/wheel/./graphein/protein/tensor 2026-02-09T19:32:06,469 copying build/lib/graphein/protein/tensor/edges.py -> build/bdist.linux-armv7l/wheel/./graphein/protein/tensor 2026-02-09T19:32:06,472 copying build/lib/graphein/protein/tensor/angles.py -> build/bdist.linux-armv7l/wheel/./graphein/protein/tensor 2026-02-09T19:32:06,475 copying build/lib/graphein/protein/tensor/pnerf.py -> build/bdist.linux-armv7l/wheel/./graphein/protein/tensor 2026-02-09T19:32:06,478 copying build/lib/graphein/protein/tensor/plot.py -> build/bdist.linux-armv7l/wheel/./graphein/protein/tensor 2026-02-09T19:32:06,480 copying build/lib/graphein/protein/tensor/representation.py -> build/bdist.linux-armv7l/wheel/./graphein/protein/tensor 2026-02-09T19:32:06,483 copying build/lib/graphein/protein/tensor/io.py -> build/bdist.linux-armv7l/wheel/./graphein/protein/tensor 2026-02-09T19:32:06,486 copying build/lib/graphein/protein/tensor/types.py -> build/bdist.linux-armv7l/wheel/./graphein/protein/tensor 2026-02-09T19:32:06,488 copying build/lib/graphein/protein/tensor/dataset.py -> build/bdist.linux-armv7l/wheel/./graphein/protein/tensor 2026-02-09T19:32:06,491 copying build/lib/graphein/protein/tensor/geometry.py -> build/bdist.linux-armv7l/wheel/./graphein/protein/tensor 2026-02-09T19:32:06,494 copying build/lib/graphein/protein/tensor/testing.py -> build/bdist.linux-armv7l/wheel/./graphein/protein/tensor 2026-02-09T19:32:06,496 copying build/lib/graphein/protein/utils.py -> build/bdist.linux-armv7l/wheel/./graphein/protein 2026-02-09T19:32:06,499 copying build/lib/graphein/protein/graphs.py -> build/bdist.linux-armv7l/wheel/./graphein/protein 2026-02-09T19:32:06,502 copying build/lib/graphein/protein/folding_utils.py -> build/bdist.linux-armv7l/wheel/./graphein/protein 2026-02-09T19:32:06,505 creating build/bdist.linux-armv7l/wheel/graphein/protein/edges 2026-02-09T19:32:06,506 copying build/lib/graphein/protein/edges/__init__.py -> build/bdist.linux-armv7l/wheel/./graphein/protein/edges 2026-02-09T19:32:06,508 copying build/lib/graphein/protein/edges/distance.py -> build/bdist.linux-armv7l/wheel/./graphein/protein/edges 2026-02-09T19:32:06,511 copying build/lib/graphein/protein/edges/intramolecular.py -> build/bdist.linux-armv7l/wheel/./graphein/protein/edges 2026-02-09T19:32:06,514 copying build/lib/graphein/protein/edges/atomic.py -> build/bdist.linux-armv7l/wheel/./graphein/protein/edges 2026-02-09T19:32:06,517 creating build/bdist.linux-armv7l/wheel/graphein/molecule 2026-02-09T19:32:06,518 copying build/lib/graphein/molecule/__init__.py -> build/bdist.linux-armv7l/wheel/./graphein/molecule 2026-02-09T19:32:06,520 copying build/lib/graphein/molecule/config.py -> build/bdist.linux-armv7l/wheel/./graphein/molecule 2026-02-09T19:32:06,522 copying build/lib/graphein/molecule/chembl.py -> build/bdist.linux-armv7l/wheel/./graphein/molecule 2026-02-09T19:32:06,524 copying build/lib/graphein/molecule/atoms.py -> build/bdist.linux-armv7l/wheel/./graphein/molecule 2026-02-09T19:32:06,527 copying build/lib/graphein/molecule/zinc.py -> build/bdist.linux-armv7l/wheel/./graphein/molecule 2026-02-09T19:32:06,529 copying build/lib/graphein/molecule/visualisation.py -> build/bdist.linux-armv7l/wheel/./graphein/molecule 2026-02-09T19:32:06,532 creating build/bdist.linux-armv7l/wheel/graphein/molecule/features 2026-02-09T19:32:06,534 creating build/bdist.linux-armv7l/wheel/graphein/molecule/features/graph 2026-02-09T19:32:06,536 copying build/lib/graphein/molecule/features/graph/molecule.py -> build/bdist.linux-armv7l/wheel/./graphein/molecule/features/graph 2026-02-09T19:32:06,538 copying build/lib/graphein/molecule/features/graph/__init__.py -> build/bdist.linux-armv7l/wheel/./graphein/molecule/features/graph 2026-02-09T19:32:06,540 copying build/lib/graphein/molecule/features/__init__.py -> build/bdist.linux-armv7l/wheel/./graphein/molecule/features 2026-02-09T19:32:06,543 creating build/bdist.linux-armv7l/wheel/graphein/molecule/features/nodes 2026-02-09T19:32:06,544 copying build/lib/graphein/molecule/features/nodes/__init__.py -> build/bdist.linux-armv7l/wheel/./graphein/molecule/features/nodes 2026-02-09T19:32:06,546 copying build/lib/graphein/molecule/features/nodes/atom_type.py -> build/bdist.linux-armv7l/wheel/./graphein/molecule/features/nodes 2026-02-09T19:32:06,549 creating build/bdist.linux-armv7l/wheel/graphein/molecule/features/edges 2026-02-09T19:32:06,550 copying build/lib/graphein/molecule/features/edges/__init__.py -> build/bdist.linux-armv7l/wheel/./graphein/molecule/features/edges 2026-02-09T19:32:06,552 copying build/lib/graphein/molecule/features/edges/bonds.py -> build/bdist.linux-armv7l/wheel/./graphein/molecule/features/edges 2026-02-09T19:32:06,555 copying build/lib/graphein/molecule/utils.py -> build/bdist.linux-armv7l/wheel/./graphein/molecule 2026-02-09T19:32:06,558 copying build/lib/graphein/molecule/graphs.py -> build/bdist.linux-armv7l/wheel/./graphein/molecule 2026-02-09T19:32:06,561 creating build/bdist.linux-armv7l/wheel/graphein/molecule/edges 2026-02-09T19:32:06,562 copying build/lib/graphein/molecule/edges/__init__.py -> build/bdist.linux-armv7l/wheel/./graphein/molecule/edges 2026-02-09T19:32:06,564 copying build/lib/graphein/molecule/edges/distance.py -> build/bdist.linux-armv7l/wheel/./graphein/molecule/edges 2026-02-09T19:32:06,566 copying build/lib/graphein/molecule/edges/atomic.py -> build/bdist.linux-armv7l/wheel/./graphein/molecule/edges 2026-02-09T19:32:06,569 creating build/bdist.linux-armv7l/wheel/graphein/rna 2026-02-09T19:32:06,570 copying build/lib/graphein/rna/__init__.py -> build/bdist.linux-armv7l/wheel/./graphein/rna 2026-02-09T19:32:06,572 copying build/lib/graphein/rna/config.py -> build/bdist.linux-armv7l/wheel/./graphein/rna 2026-02-09T19:32:06,574 copying build/lib/graphein/rna/nussinov.py -> build/bdist.linux-armv7l/wheel/./graphein/rna 2026-02-09T19:32:06,577 copying build/lib/graphein/rna/subgraphs.py -> build/bdist.linux-armv7l/wheel/./graphein/rna 2026-02-09T19:32:06,580 copying build/lib/graphein/rna/visualisation.py -> build/bdist.linux-armv7l/wheel/./graphein/rna 2026-02-09T19:32:06,583 creating build/bdist.linux-armv7l/wheel/graphein/rna/features 2026-02-09T19:32:06,584 copying build/lib/graphein/rna/features/__init__.py -> build/bdist.linux-armv7l/wheel/./graphein/rna/features 2026-02-09T19:32:06,586 copying build/lib/graphein/rna/features/atom.py -> build/bdist.linux-armv7l/wheel/./graphein/rna/features 2026-02-09T19:32:06,588 copying build/lib/graphein/rna/constants.py -> build/bdist.linux-armv7l/wheel/./graphein/rna 2026-02-09T19:32:06,590 copying build/lib/graphein/rna/utils.py -> build/bdist.linux-armv7l/wheel/./graphein/rna 2026-02-09T19:32:06,592 copying build/lib/graphein/rna/graphs.py -> build/bdist.linux-armv7l/wheel/./graphein/rna 2026-02-09T19:32:06,595 creating build/bdist.linux-armv7l/wheel/graphein/rna/edges 2026-02-09T19:32:06,596 copying build/lib/graphein/rna/edges/__init__.py -> build/bdist.linux-armv7l/wheel/./graphein/rna/edges 2026-02-09T19:32:06,598 copying build/lib/graphein/rna/edges/distance.py -> build/bdist.linux-armv7l/wheel/./graphein/rna/edges 2026-02-09T19:32:06,600 copying build/lib/graphein/rna/edges/base_pairing.py -> build/bdist.linux-armv7l/wheel/./graphein/rna/edges 2026-02-09T19:32:06,603 copying build/lib/graphein/rna/edges/atomic.py -> build/bdist.linux-armv7l/wheel/./graphein/rna/edges 2026-02-09T19:32:06,605 copying build/lib/graphein/__init__.py -> build/bdist.linux-armv7l/wheel/./graphein 2026-02-09T19:32:06,608 creating build/bdist.linux-armv7l/wheel/graphein/testing 2026-02-09T19:32:06,609 copying build/lib/graphein/testing/__init__.py -> build/bdist.linux-armv7l/wheel/./graphein/testing 2026-02-09T19:32:06,611 copying build/lib/graphein/testing/utils.py -> build/bdist.linux-armv7l/wheel/./graphein/testing 2026-02-09T19:32:06,613 copying build/lib/graphein/cli.py -> build/bdist.linux-armv7l/wheel/./graphein 2026-02-09T19:32:06,616 creating build/bdist.linux-armv7l/wheel/graphein/ppi 2026-02-09T19:32:06,617 copying build/lib/graphein/ppi/parse_biogrid.py -> build/bdist.linux-armv7l/wheel/./graphein/ppi 2026-02-09T19:32:06,619 copying build/lib/graphein/ppi/__init__.py -> build/bdist.linux-armv7l/wheel/./graphein/ppi 2026-02-09T19:32:06,621 copying build/lib/graphein/ppi/edges.py -> build/bdist.linux-armv7l/wheel/./graphein/ppi 2026-02-09T19:32:06,623 copying build/lib/graphein/ppi/config.py -> build/bdist.linux-armv7l/wheel/./graphein/ppi 2026-02-09T19:32:06,625 copying build/lib/graphein/ppi/graph_metadata.py -> build/bdist.linux-armv7l/wheel/./graphein/ppi 2026-02-09T19:32:06,627 copying build/lib/graphein/ppi/visualisation.py -> build/bdist.linux-armv7l/wheel/./graphein/ppi 2026-02-09T19:32:06,630 creating build/bdist.linux-armv7l/wheel/graphein/ppi/features 2026-02-09T19:32:06,631 copying build/lib/graphein/ppi/features/__init__.py -> build/bdist.linux-armv7l/wheel/./graphein/ppi/features 2026-02-09T19:32:06,633 copying build/lib/graphein/ppi/features/node_features.py -> build/bdist.linux-armv7l/wheel/./graphein/ppi/features 2026-02-09T19:32:06,635 copying build/lib/graphein/ppi/parse_stringdb.py -> build/bdist.linux-armv7l/wheel/./graphein/ppi 2026-02-09T19:32:06,638 copying build/lib/graphein/ppi/graphs.py -> build/bdist.linux-armv7l/wheel/./graphein/ppi 2026-02-09T19:32:06,641 creating build/bdist.linux-armv7l/wheel/graphein/utils 2026-02-09T19:32:06,642 copying build/lib/graphein/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./graphein/utils 2026-02-09T19:32:06,644 copying build/lib/graphein/utils/dependencies.py -> build/bdist.linux-armv7l/wheel/./graphein/utils 2026-02-09T19:32:06,646 copying build/lib/graphein/utils/config.py -> build/bdist.linux-armv7l/wheel/./graphein/utils 2026-02-09T19:32:06,648 copying build/lib/graphein/utils/config_parser.py -> build/bdist.linux-armv7l/wheel/./graphein/utils 2026-02-09T19:32:06,651 creating build/bdist.linux-armv7l/wheel/graphein/utils/pymol 2026-02-09T19:32:06,652 copying build/lib/graphein/utils/pymol/__init__.py -> build/bdist.linux-armv7l/wheel/./graphein/utils/pymol 2026-02-09T19:32:06,654 copying build/lib/graphein/utils/pymol/core.py -> build/bdist.linux-armv7l/wheel/./graphein/utils/pymol 2026-02-09T19:32:06,656 copying build/lib/graphein/utils/pymol/compat.py -> build/bdist.linux-armv7l/wheel/./graphein/utils/pymol 2026-02-09T19:32:06,658 copying build/lib/graphein/utils/utils.py -> build/bdist.linux-armv7l/wheel/./graphein/utils 2026-02-09T19:32:06,661 creating build/bdist.linux-armv7l/wheel/graphein/grn 2026-02-09T19:32:06,662 copying build/lib/graphein/grn/parse_trrust.py -> build/bdist.linux-armv7l/wheel/./graphein/grn 2026-02-09T19:32:06,665 copying build/lib/graphein/grn/__init__.py -> build/bdist.linux-armv7l/wheel/./graphein/grn 2026-02-09T19:32:06,667 copying build/lib/graphein/grn/edges.py -> build/bdist.linux-armv7l/wheel/./graphein/grn 2026-02-09T19:32:06,669 copying build/lib/graphein/grn/config.py -> build/bdist.linux-armv7l/wheel/./graphein/grn 2026-02-09T19:32:06,671 creating build/bdist.linux-armv7l/wheel/graphein/grn/features 2026-02-09T19:32:06,672 copying build/lib/graphein/grn/features/__init__.py -> build/bdist.linux-armv7l/wheel/./graphein/grn/features 2026-02-09T19:32:06,674 copying build/lib/graphein/grn/features/node_features.py -> build/bdist.linux-armv7l/wheel/./graphein/grn/features 2026-02-09T19:32:06,676 copying build/lib/graphein/grn/graphs.py -> build/bdist.linux-armv7l/wheel/./graphein/grn 2026-02-09T19:32:06,678 copying build/lib/graphein/grn/parse_regnetwork.py -> build/bdist.linux-armv7l/wheel/./graphein/grn 2026-02-09T19:32:06,681 creating build/bdist.linux-armv7l/wheel/graphein/ml 2026-02-09T19:32:06,682 copying build/lib/graphein/ml/__init__.py -> build/bdist.linux-armv7l/wheel/./graphein/ml 2026-02-09T19:32:06,684 creating build/bdist.linux-armv7l/wheel/graphein/ml/metrics 2026-02-09T19:32:06,686 copying build/lib/graphein/ml/metrics/gdt.py -> build/bdist.linux-armv7l/wheel/./graphein/ml/metrics 2026-02-09T19:32:06,688 copying build/lib/graphein/ml/metrics/tm_score.py -> build/bdist.linux-armv7l/wheel/./graphein/ml/metrics 2026-02-09T19:32:06,689 copying build/lib/graphein/ml/metrics/__init__.py -> build/bdist.linux-armv7l/wheel/./graphein/ml/metrics 2026-02-09T19:32:06,692 creating build/bdist.linux-armv7l/wheel/graphein/ml/datasets 2026-02-09T19:32:06,693 copying build/lib/graphein/ml/datasets/foldcomp_dataset.py -> build/bdist.linux-armv7l/wheel/./graphein/ml/datasets 2026-02-09T19:32:06,696 copying build/lib/graphein/ml/datasets/__init__.py -> build/bdist.linux-armv7l/wheel/./graphein/ml/datasets 2026-02-09T19:32:06,698 copying build/lib/graphein/ml/datasets/torch_geometric_dataset.py -> build/bdist.linux-armv7l/wheel/./graphein/ml/datasets 2026-02-09T19:32:06,701 copying build/lib/graphein/ml/datasets/pdb_data.py -> build/bdist.linux-armv7l/wheel/./graphein/ml/datasets 2026-02-09T19:32:06,704 copying build/lib/graphein/ml/visualisation.py -> build/bdist.linux-armv7l/wheel/./graphein/ml 2026-02-09T19:32:06,707 copying build/lib/graphein/ml/conversion.py -> build/bdist.linux-armv7l/wheel/./graphein/ml 2026-02-09T19:32:06,709 copying build/lib/graphein/ml/clustering.py -> build/bdist.linux-armv7l/wheel/./graphein/ml 2026-02-09T19:32:06,712 copying build/lib/graphein/ml/utils.py -> build/bdist.linux-armv7l/wheel/./graphein/ml 2026-02-09T19:32:06,714 copying build/lib/graphein/ml/diffusion.py -> build/bdist.linux-armv7l/wheel/./graphein/ml 2026-02-09T19:32:06,716 creating build/bdist.linux-armv7l/wheel/tests 2026-02-09T19:32:06,718 creating build/bdist.linux-armv7l/wheel/tests/protein 2026-02-09T19:32:06,719 copying build/lib/tests/protein/test_utils.py -> build/bdist.linux-armv7l/wheel/./tests/protein 2026-02-09T19:32:06,721 copying build/lib/tests/protein/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/protein 2026-02-09T19:32:06,724 creating build/bdist.linux-armv7l/wheel/tests/protein/nodes 2026-02-09T19:32:06,725 copying build/lib/tests/protein/nodes/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/protein/nodes 2026-02-09T19:32:06,727 creating build/bdist.linux-armv7l/wheel/tests/protein/nodes/features 2026-02-09T19:32:06,728 copying build/lib/tests/protein/nodes/features/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/protein/nodes/features 2026-02-09T19:32:06,730 copying build/lib/tests/protein/nodes/features/test_dssp.py -> build/bdist.linux-armv7l/wheel/./tests/protein/nodes/features 2026-02-09T19:32:06,732 copying build/lib/tests/protein/nodes/features/test_geometry.py -> build/bdist.linux-armv7l/wheel/./tests/protein/nodes/features 2026-02-09T19:32:06,735 copying build/lib/tests/protein/nodes/features/test_amino_acid.py -> build/bdist.linux-armv7l/wheel/./tests/protein/nodes/features 2026-02-09T19:32:06,737 copying build/lib/tests/protein/test_graphs.py -> build/bdist.linux-armv7l/wheel/./tests/protein 2026-02-09T19:32:06,740 creating build/bdist.linux-armv7l/wheel/tests/protein/tensor 2026-02-09T19:32:06,741 copying build/lib/tests/protein/tensor/test_io.py -> build/bdist.linux-armv7l/wheel/./tests/protein/tensor 2026-02-09T19:32:06,743 copying build/lib/tests/protein/tensor/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/protein/tensor 2026-02-09T19:32:06,745 copying build/lib/tests/protein/tensor/test_reconstruction.py -> build/bdist.linux-armv7l/wheel/./tests/protein/tensor 2026-02-09T19:32:06,747 copying build/lib/tests/protein/tensor/test_sequence.py -> build/bdist.linux-armv7l/wheel/./tests/protein/tensor 2026-02-09T19:32:06,749 copying build/lib/tests/protein/tensor/test_data.py -> build/bdist.linux-armv7l/wheel/./tests/protein/tensor 2026-02-09T19:32:06,750 copying build/lib/tests/protein/tensor/test_angles.py -> build/bdist.linux-armv7l/wheel/./tests/protein/tensor 2026-02-09T19:32:06,753 copying build/lib/tests/protein/tensor/test_geometry.py -> build/bdist.linux-armv7l/wheel/./tests/protein/tensor 2026-02-09T19:32:06,755 copying build/lib/tests/protein/tensor/test_representation.py -> build/bdist.linux-armv7l/wheel/./tests/protein/tensor 2026-02-09T19:32:06,757 copying build/lib/tests/protein/test_subgraphs.py -> build/bdist.linux-armv7l/wheel/./tests/protein 2026-02-09T19:32:06,760 creating build/bdist.linux-armv7l/wheel/tests/protein/edges 2026-02-09T19:32:06,761 copying build/lib/tests/protein/edges/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/protein/edges 2026-02-09T19:32:06,762 copying build/lib/tests/protein/edges/test_distance.py -> build/bdist.linux-armv7l/wheel/./tests/protein/edges 2026-02-09T19:32:06,765 creating build/bdist.linux-armv7l/wheel/tests/rna 2026-02-09T19:32:06,766 copying build/lib/tests/rna/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/rna 2026-02-09T19:32:06,768 copying build/lib/tests/rna/test_graphs.py -> build/bdist.linux-armv7l/wheel/./tests/rna 2026-02-09T19:32:06,770 copying build/lib/tests/rna/test_subgraphs.py -> build/bdist.linux-armv7l/wheel/./tests/rna 2026-02-09T19:32:06,772 copying build/lib/tests/rna/test_nussinov.py -> build/bdist.linux-armv7l/wheel/./tests/rna 2026-02-09T19:32:06,774 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./tests 2026-02-09T19:32:06,776 creating build/bdist.linux-armv7l/wheel/tests/testing 2026-02-09T19:32:06,777 copying build/lib/tests/testing/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/testing 2026-02-09T19:32:06,779 copying build/lib/tests/testing/utils.py -> build/bdist.linux-armv7l/wheel/./tests/testing 2026-02-09T19:32:06,781 creating build/bdist.linux-armv7l/wheel/tests/datasets 2026-02-09T19:32:06,782 copying build/lib/tests/datasets/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/datasets 2026-02-09T19:32:06,784 copying build/lib/tests/datasets/pdb_data.py -> build/bdist.linux-armv7l/wheel/./tests/datasets 2026-02-09T19:32:06,786 copying build/lib/tests/conftest.py -> build/bdist.linux-armv7l/wheel/./tests 2026-02-09T19:32:06,788 creating build/bdist.linux-armv7l/wheel/tests/ppi 2026-02-09T19:32:06,790 copying build/lib/tests/ppi/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/ppi 2026-02-09T19:32:06,791 copying build/lib/tests/ppi/test_graphs.py -> build/bdist.linux-armv7l/wheel/./tests/ppi 2026-02-09T19:32:06,794 creating build/bdist.linux-armv7l/wheel/tests/utils 2026-02-09T19:32:06,795 copying build/lib/tests/utils/test_yml_parser.py -> build/bdist.linux-armv7l/wheel/./tests/utils 2026-02-09T19:32:06,797 copying build/lib/tests/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/utils 2026-02-09T19:32:06,798 copying build/lib/tests/utils/test_cli.py -> build/bdist.linux-armv7l/wheel/./tests/utils 2026-02-09T19:32:06,801 creating build/bdist.linux-armv7l/wheel/tests/grn 2026-02-09T19:32:06,802 copying build/lib/tests/grn/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/grn 2026-02-09T19:32:06,803 copying build/lib/tests/grn/test_graphs.py -> build/bdist.linux-armv7l/wheel/./tests/grn 2026-02-09T19:32:06,805 copying build/lib/tests/test_graphein.py -> build/bdist.linux-armv7l/wheel/./tests 2026-02-09T19:32:06,808 creating build/bdist.linux-armv7l/wheel/tests/ml 2026-02-09T19:32:06,809 copying build/lib/tests/ml/test_conversion.py -> build/bdist.linux-armv7l/wheel/./tests/ml 2026-02-09T19:32:06,811 copying build/lib/tests/ml/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/ml 2026-02-09T19:32:06,813 copying build/lib/tests/ml/test_torch_geometric_dataset.py -> build/bdist.linux-armv7l/wheel/./tests/ml 2026-02-09T19:32:06,815 running install_egg_info 2026-02-09T19:32:06,828 Copying graphein.egg-info to build/bdist.linux-armv7l/wheel/./graphein-1.7.8-py3.11.egg-info 2026-02-09T19:32:06,841 running install_scripts 2026-02-09T19:32:06,853 creating build/bdist.linux-armv7l/wheel/graphein-1.7.8.dist-info/WHEEL 2026-02-09T19:32:06,856 creating '/tmp/pip-wheel-voncumzh/.tmp-pbzqku1c/graphein-1.7.8-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-02-09T19:32:06,859 adding 'graphein/__init__.py' 2026-02-09T19:32:06,860 adding 'graphein/cli.py' 2026-02-09T19:32:06,862 adding 'graphein/grn/__init__.py' 2026-02-09T19:32:06,863 adding 'graphein/grn/config.py' 2026-02-09T19:32:06,865 adding 'graphein/grn/edges.py' 2026-02-09T19:32:06,866 adding 'graphein/grn/graphs.py' 2026-02-09T19:32:06,868 adding 'graphein/grn/parse_regnetwork.py' 2026-02-09T19:32:06,869 adding 'graphein/grn/parse_trrust.py' 2026-02-09T19:32:06,871 adding 'graphein/grn/features/__init__.py' 2026-02-09T19:32:06,872 adding 'graphein/grn/features/node_features.py' 2026-02-09T19:32:06,874 adding 'graphein/ml/__init__.py' 2026-02-09T19:32:06,877 adding 'graphein/ml/clustering.py' 2026-02-09T19:32:06,879 adding 'graphein/ml/conversion.py' 2026-02-09T19:32:06,881 adding 'graphein/ml/diffusion.py' 2026-02-09T19:32:06,882 adding 'graphein/ml/utils.py' 2026-02-09T19:32:06,884 adding 'graphein/ml/visualisation.py' 2026-02-09T19:32:06,885 adding 'graphein/ml/datasets/__init__.py' 2026-02-09T19:32:06,888 adding 'graphein/ml/datasets/foldcomp_dataset.py' 2026-02-09T19:32:06,896 adding 'graphein/ml/datasets/pdb_data.py' 2026-02-09T19:32:06,899 adding 'graphein/ml/datasets/torch_geometric_dataset.py' 2026-02-09T19:32:06,901 adding 'graphein/ml/metrics/__init__.py' 2026-02-09T19:32:06,902 adding 'graphein/ml/metrics/gdt.py' 2026-02-09T19:32:06,904 adding 'graphein/ml/metrics/tm_score.py' 2026-02-09T19:32:06,906 adding 'graphein/molecule/__init__.py' 2026-02-09T19:32:06,907 adding 'graphein/molecule/atoms.py' 2026-02-09T19:32:06,909 adding 'graphein/molecule/chembl.py' 2026-02-09T19:32:06,910 adding 'graphein/molecule/config.py' 2026-02-09T19:32:06,912 adding 'graphein/molecule/graphs.py' 2026-02-09T19:32:06,914 adding 'graphein/molecule/utils.py' 2026-02-09T19:32:06,916 adding 'graphein/molecule/visualisation.py' 2026-02-09T19:32:06,917 adding 'graphein/molecule/zinc.py' 2026-02-09T19:32:06,919 adding 'graphein/molecule/edges/__init__.py' 2026-02-09T19:32:06,920 adding 'graphein/molecule/edges/atomic.py' 2026-02-09T19:32:06,922 adding 'graphein/molecule/edges/distance.py' 2026-02-09T19:32:06,923 adding 'graphein/molecule/features/__init__.py' 2026-02-09T19:32:06,925 adding 'graphein/molecule/features/edges/__init__.py' 2026-02-09T19:32:06,927 adding 'graphein/molecule/features/edges/bonds.py' 2026-02-09T19:32:06,928 adding 'graphein/molecule/features/graph/__init__.py' 2026-02-09T19:32:06,929 adding 'graphein/molecule/features/graph/molecule.py' 2026-02-09T19:32:06,931 adding 'graphein/molecule/features/nodes/__init__.py' 2026-02-09T19:32:06,933 adding 'graphein/molecule/features/nodes/atom_type.py' 2026-02-09T19:32:06,935 adding 'graphein/ppi/__init__.py' 2026-02-09T19:32:06,936 adding 'graphein/ppi/config.py' 2026-02-09T19:32:06,938 adding 'graphein/ppi/edges.py' 2026-02-09T19:32:06,939 adding 'graphein/ppi/graph_metadata.py' 2026-02-09T19:32:06,941 adding 'graphein/ppi/graphs.py' 2026-02-09T19:32:06,943 adding 'graphein/ppi/parse_biogrid.py' 2026-02-09T19:32:06,944 adding 'graphein/ppi/parse_stringdb.py' 2026-02-09T19:32:06,946 adding 'graphein/ppi/visualisation.py' 2026-02-09T19:32:06,948 adding 'graphein/ppi/features/__init__.py' 2026-02-09T19:32:06,949 adding 'graphein/ppi/features/node_features.py' 2026-02-09T19:32:06,951 adding 'graphein/protein/__init__.py' 2026-02-09T19:32:06,953 adding 'graphein/protein/analysis.py' 2026-02-09T19:32:06,955 adding 'graphein/protein/config.py' 2026-02-09T19:32:06,957 adding 'graphein/protein/folding_utils.py' 2026-02-09T19:32:06,962 adding 'graphein/protein/graphs.py' 2026-02-09T19:32:06,964 adding 'graphein/protein/meshes.py' 2026-02-09T19:32:06,970 adding 'graphein/protein/resi_atoms.py' 2026-02-09T19:32:06,973 adding 'graphein/protein/subgraphs.py' 2026-02-09T19:32:06,976 adding 'graphein/protein/utils.py' 2026-02-09T19:32:06,980 adding 'graphein/protein/visualisation.py' 2026-02-09T19:32:06,982 adding 'graphein/protein/edges/__init__.py' 2026-02-09T19:32:06,985 adding 'graphein/protein/edges/atomic.py' 2026-02-09T19:32:06,990 adding 'graphein/protein/edges/distance.py' 2026-02-09T19:32:06,992 adding 'graphein/protein/edges/intramolecular.py' 2026-02-09T19:32:06,994 adding 'graphein/protein/features/__init__.py' 2026-02-09T19:32:06,995 adding 'graphein/protein/features/utils.py' 2026-02-09T19:32:06,996 adding 'graphein/protein/features/data/__init__.py' 2026-02-09T19:32:06,998 adding 'graphein/protein/features/graph/__init__.py' 2026-02-09T19:32:06,999 adding 'graphein/protein/features/graph/dynamics.py' 2026-02-09T19:32:07,000 adding 'graphein/protein/features/graph/structure.py' 2026-02-09T19:32:07,002 adding 'graphein/protein/features/nodes/__init__.py' 2026-02-09T19:32:07,003 adding 'graphein/protein/features/nodes/aaindex.py' 2026-02-09T19:32:07,005 adding 'graphein/protein/features/nodes/amino_acid.py' 2026-02-09T19:32:07,007 adding 'graphein/protein/features/nodes/amino_acid_properties.csv' 2026-02-09T19:32:07,009 adding 'graphein/protein/features/nodes/dssp.py' 2026-02-09T19:32:07,011 adding 'graphein/protein/features/nodes/geometry.py' 2026-02-09T19:32:07,012 adding 'graphein/protein/features/nodes/meiler_embeddings.csv' 2026-02-09T19:32:07,013 adding 'graphein/protein/features/pretrained_models/__init__.py' 2026-02-09T19:32:07,015 adding 'graphein/protein/features/sequence/__init__.py' 2026-02-09T19:32:07,017 adding 'graphein/protein/features/sequence/embeddings.py' 2026-02-09T19:32:07,020 adding 'graphein/protein/features/sequence/propy.py' 2026-02-09T19:32:07,022 adding 'graphein/protein/features/sequence/sequence.py' 2026-02-09T19:32:07,024 adding 'graphein/protein/features/sequence/utils.py' 2026-02-09T19:32:07,026 adding 'graphein/protein/tensor/__init__.py' 2026-02-09T19:32:07,028 adding 'graphein/protein/tensor/angles.py' 2026-02-09T19:32:07,033 adding 'graphein/protein/tensor/data.py' 2026-02-09T19:32:07,035 adding 'graphein/protein/tensor/dataloader.py' 2026-02-09T19:32:07,037 adding 'graphein/protein/tensor/dataset.py' 2026-02-09T19:32:07,039 adding 'graphein/protein/tensor/edges.py' 2026-02-09T19:32:07,041 adding 'graphein/protein/tensor/geometry.py' 2026-02-09T19:32:07,044 adding 'graphein/protein/tensor/io.py' 2026-02-09T19:32:07,046 adding 'graphein/protein/tensor/plot.py' 2026-02-09T19:32:07,048 adding 'graphein/protein/tensor/pnerf.py' 2026-02-09T19:32:07,050 adding 'graphein/protein/tensor/reconstruction.py' 2026-02-09T19:32:07,051 adding 'graphein/protein/tensor/representation.py' 2026-02-09T19:32:07,053 adding 'graphein/protein/tensor/sequence.py' 2026-02-09T19:32:07,055 adding 'graphein/protein/tensor/testing.py' 2026-02-09T19:32:07,056 adding 'graphein/protein/tensor/types.py' 2026-02-09T19:32:07,058 adding 'graphein/rna/__init__.py' 2026-02-09T19:32:07,059 adding 'graphein/rna/config.py' 2026-02-09T19:32:07,061 adding 'graphein/rna/constants.py' 2026-02-09T19:32:07,063 adding 'graphein/rna/graphs.py' 2026-02-09T19:32:07,065 adding 'graphein/rna/nussinov.py' 2026-02-09T19:32:07,066 adding 'graphein/rna/subgraphs.py' 2026-02-09T19:32:07,068 adding 'graphein/rna/utils.py' 2026-02-09T19:32:07,069 adding 'graphein/rna/visualisation.py' 2026-02-09T19:32:07,071 adding 'graphein/rna/edges/__init__.py' 2026-02-09T19:32:07,072 adding 'graphein/rna/edges/atomic.py' 2026-02-09T19:32:07,074 adding 'graphein/rna/edges/base_pairing.py' 2026-02-09T19:32:07,075 adding 'graphein/rna/edges/distance.py' 2026-02-09T19:32:07,077 adding 'graphein/rna/features/__init__.py' 2026-02-09T19:32:07,078 adding 'graphein/rna/features/atom.py' 2026-02-09T19:32:07,080 adding 'graphein/testing/__init__.py' 2026-02-09T19:32:07,082 adding 'graphein/testing/utils.py' 2026-02-09T19:32:07,083 adding 'graphein/utils/__init__.py' 2026-02-09T19:32:07,084 adding 'graphein/utils/config.py' 2026-02-09T19:32:07,086 adding 'graphein/utils/config_parser.py' 2026-02-09T19:32:07,087 adding 'graphein/utils/dependencies.py' 2026-02-09T19:32:07,089 adding 'graphein/utils/utils.py' 2026-02-09T19:32:07,091 adding 'graphein/utils/pymol/__init__.py' 2026-02-09T19:32:07,092 adding 'graphein/utils/pymol/compat.py' 2026-02-09T19:32:07,093 adding 'graphein/utils/pymol/core.py' 2026-02-09T19:32:07,096 adding 'graphein-1.7.8.dist-info/licenses/LICENSE' 2026-02-09T19:32:07,098 adding 'tests/__init__.py' 2026-02-09T19:32:07,099 adding 'tests/conftest.py' 2026-02-09T19:32:07,100 adding 'tests/test_graphein.py' 2026-02-09T19:32:07,102 adding 'tests/datasets/__init__.py' 2026-02-09T19:32:07,103 adding 'tests/datasets/pdb_data.py' 2026-02-09T19:32:07,105 adding 'tests/grn/__init__.py' 2026-02-09T19:32:07,106 adding 'tests/grn/test_graphs.py' 2026-02-09T19:32:07,108 adding 'tests/ml/__init__.py' 2026-02-09T19:32:07,109 adding 'tests/ml/test_conversion.py' 2026-02-09T19:32:07,110 adding 'tests/ml/test_torch_geometric_dataset.py' 2026-02-09T19:32:07,112 adding 'tests/ppi/__init__.py' 2026-02-09T19:32:07,113 adding 'tests/ppi/test_graphs.py' 2026-02-09T19:32:07,115 adding 'tests/protein/__init__.py' 2026-02-09T19:32:07,117 adding 'tests/protein/test_graphs.py' 2026-02-09T19:32:07,119 adding 'tests/protein/test_subgraphs.py' 2026-02-09T19:32:07,120 adding 'tests/protein/test_utils.py' 2026-02-09T19:32:07,122 adding 'tests/protein/edges/__init__.py' 2026-02-09T19:32:07,124 adding 'tests/protein/edges/test_distance.py' 2026-02-09T19:32:07,126 adding 'tests/protein/nodes/__init__.py' 2026-02-09T19:32:07,128 adding 'tests/protein/nodes/features/__init__.py' 2026-02-09T19:32:07,129 adding 'tests/protein/nodes/features/test_amino_acid.py' 2026-02-09T19:32:07,130 adding 'tests/protein/nodes/features/test_dssp.py' 2026-02-09T19:32:07,132 adding 'tests/protein/nodes/features/test_geometry.py' 2026-02-09T19:32:07,134 adding 'tests/protein/tensor/__init__.py' 2026-02-09T19:32:07,135 adding 'tests/protein/tensor/test_angles.py' 2026-02-09T19:32:07,136 adding 'tests/protein/tensor/test_data.py' 2026-02-09T19:32:07,137 adding 'tests/protein/tensor/test_geometry.py' 2026-02-09T19:32:07,139 adding 'tests/protein/tensor/test_io.py' 2026-02-09T19:32:07,140 adding 'tests/protein/tensor/test_reconstruction.py' 2026-02-09T19:32:07,141 adding 'tests/protein/tensor/test_representation.py' 2026-02-09T19:32:07,143 adding 'tests/protein/tensor/test_sequence.py' 2026-02-09T19:32:07,145 adding 'tests/rna/__init__.py' 2026-02-09T19:32:07,146 adding 'tests/rna/test_graphs.py' 2026-02-09T19:32:07,147 adding 'tests/rna/test_nussinov.py' 2026-02-09T19:32:07,149 adding 'tests/rna/test_subgraphs.py' 2026-02-09T19:32:07,150 adding 'tests/testing/__init__.py' 2026-02-09T19:32:07,152 adding 'tests/testing/utils.py' 2026-02-09T19:32:07,153 adding 'tests/utils/__init__.py' 2026-02-09T19:32:07,155 adding 'tests/utils/test_cli.py' 2026-02-09T19:32:07,156 adding 'tests/utils/test_yml_parser.py' 2026-02-09T19:32:07,158 adding 'graphein-1.7.8.dist-info/METADATA' 2026-02-09T19:32:07,159 adding 'graphein-1.7.8.dist-info/WHEEL' 2026-02-09T19:32:07,160 adding 'graphein-1.7.8.dist-info/entry_points.txt' 2026-02-09T19:32:07,161 adding 'graphein-1.7.8.dist-info/top_level.txt' 2026-02-09T19:32:07,164 adding 'graphein-1.7.8.dist-info/RECORD' 2026-02-09T19:32:07,170 removing build/bdist.linux-armv7l/wheel 2026-02-09T19:32:07,321 Building wheel for graphein (pyproject.toml): finished with status 'done' 2026-02-09T19:32:07,332 Created wheel for graphein: filename=graphein-1.7.8-py3-none-any.whl size=317040 sha256=afc5d8e3505dc1b657b9bdb932fc2149c654e029ccfac6c2eca623a634ebc5c2 2026-02-09T19:32:07,334 Stored in directory: /tmp/pip-ephem-wheel-cache-y7gzlxl6/wheels/33/d4/79/b0b0551d9d8f76622ded2ffd7dd3240c04356b715de5998f05 2026-02-09T19:32:07,354 Successfully built graphein 2026-02-09T19:32:07,365 Removed build tracker: '/tmp/pip-build-tracker-dzecefxr'