2026-02-10T05:38:32,946 Created temporary directory: /tmp/pip-ephem-wheel-cache-jmpfjbnv
2026-02-10T05:38:32,948 Created temporary directory: /tmp/pip-build-tracker-pmverxpn
2026-02-10T05:38:32,949 Initialized build tracking at /tmp/pip-build-tracker-pmverxpn
2026-02-10T05:38:32,949 Created build tracker: /tmp/pip-build-tracker-pmverxpn
2026-02-10T05:38:32,949 Entered build tracker: /tmp/pip-build-tracker-pmverxpn
2026-02-10T05:38:32,950 Created temporary directory: /tmp/pip-wheel-vp7f8aqa
2026-02-10T05:38:32,953 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-02-10T05:38:32,956 Created temporary directory: /tmp/pip-ephem-wheel-cache-_mki1un2
2026-02-10T05:38:32,977 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-02-10T05:38:32,980 2 location(s) to search for versions of torchref:
2026-02-10T05:38:32,980 * https://pypi.org/simple/torchref/
2026-02-10T05:38:32,980 * https://www.piwheels.org/simple/torchref/
2026-02-10T05:38:32,981 Fetching project page and analyzing links: https://pypi.org/simple/torchref/
2026-02-10T05:38:32,982 Getting page https://pypi.org/simple/torchref/
2026-02-10T05:38:32,983 Found index url https://pypi.org/simple
2026-02-10T05:38:33,130 Fetched page https://pypi.org/simple/torchref/ as application/vnd.pypi.simple.v1+json
2026-02-10T05:38:33,132   Skipping link: No binaries permitted for torchref: https://files.pythonhosted.org/packages/64/ac/2604e364cc5df69ccdc7f3c9f0cdccaf9c51e96c4d622e64b508ed42d102/torchref-0.3.0-py3-none-any.whl (from https://pypi.org/simple/torchref/) (requires-python:>=3.9)
2026-02-10T05:38:33,133   Found link https://files.pythonhosted.org/packages/73/7f/9c1e4112b5dd16c6712d7a8542a20f84bfd290f42c79dbcc4124a4df4ec9/torchref-0.3.0.tar.gz (from https://pypi.org/simple/torchref/) (requires-python:>=3.9), version: 0.3.0
2026-02-10T05:38:33,134   Skipping link: No binaries permitted for torchref: https://files.pythonhosted.org/packages/2c/60/fa60e785ed08bc2e5a786869b7143e31881874cf9e87a83b7602322bb6e5/torchref-0.3.1-py3-none-any.whl (from https://pypi.org/simple/torchref/) (requires-python:>=3.9)
2026-02-10T05:38:33,135   Found link https://files.pythonhosted.org/packages/70/0e/584b23bda864347754d7b0c9fcced9ee05dc5f7d3424d8cfd74717b6bb2f/torchref-0.3.1.tar.gz (from https://pypi.org/simple/torchref/) (requires-python:>=3.9), version: 0.3.1
2026-02-10T05:38:33,135   Skipping link: No binaries permitted for torchref: https://files.pythonhosted.org/packages/e8/b3/f063b38c335c7b0c625fd7306e6b594e5ff453ab41b33317decaa6feadc3/torchref-0.3.2-py3-none-any.whl (from https://pypi.org/simple/torchref/) (requires-python:>=3.9)
2026-02-10T05:38:33,136   Found link https://files.pythonhosted.org/packages/da/78/277f71170bd394e88380562379e2fe3b292acd3eb6d95ce110671da4ef59/torchref-0.3.2.tar.gz (from https://pypi.org/simple/torchref/) (requires-python:>=3.9), version: 0.3.2
2026-02-10T05:38:33,137 Fetching project page and analyzing links: https://www.piwheels.org/simple/torchref/
2026-02-10T05:38:33,138 Getting page https://www.piwheels.org/simple/torchref/
2026-02-10T05:38:33,139 Found index url https://www.piwheels.org/simple
2026-02-10T05:38:33,305 Fetched page https://www.piwheels.org/simple/torchref/ as text/html
2026-02-10T05:38:33,306   Skipping link: No binaries permitted for torchref: https://www.piwheels.org/simple/torchref/torchref-0.3.0-py3-none-any.whl#sha256=3032f506e2c816e7e7638e151ed6e70bf0f6b0213e92f8f790dce96c53c0d65f (from https://www.piwheels.org/simple/torchref/) (requires-python:>=3.9)
2026-02-10T05:38:33,307 Skipping link: not a file: https://www.piwheels.org/simple/torchref/
2026-02-10T05:38:33,308 Skipping link: not a file: https://pypi.org/simple/torchref/
2026-02-10T05:38:33,326 Given no hashes to check 1 links for project 'torchref': discarding no candidates
2026-02-10T05:38:33,344 Collecting torchref==0.3.1
2026-02-10T05:38:33,347   Created temporary directory: /tmp/pip-unpack-yasv1_l1
2026-02-10T05:38:33,491   Downloading torchref-0.3.1.tar.gz (401 kB)
2026-02-10T05:38:33,904   Added torchref==0.3.1 from https://files.pythonhosted.org/packages/70/0e/584b23bda864347754d7b0c9fcced9ee05dc5f7d3424d8cfd74717b6bb2f/torchref-0.3.1.tar.gz to build tracker '/tmp/pip-build-tracker-pmverxpn'
2026-02-10T05:38:33,909   Created temporary directory: /tmp/pip-build-env-l6duvw8x
2026-02-10T05:38:33,914   Installing build dependencies: started
2026-02-10T05:38:33,915   Running command pip subprocess to install build dependencies
2026-02-10T05:38:35,088   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-02-10T05:38:35,632   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-02-10T05:38:35,655   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-02-10T05:38:37,439   Collecting setuptools>=42
2026-02-10T05:38:37,458     Using cached setuptools-82.0.0-py3-none-any.whl (1.0 MB)
2026-02-10T05:38:37,732   Collecting wheel
2026-02-10T05:38:37,748     Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB)
2026-02-10T05:38:37,931   Collecting packaging>=24.0
2026-02-10T05:38:37,949     Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB)
2026-02-10T05:38:40,935   Installing collected packages: setuptools, packaging, wheel
2026-02-10T05:38:44,245     Creating /tmp/pip-build-env-l6duvw8x/overlay/local/bin
2026-02-10T05:38:44,247     changing mode of /tmp/pip-build-env-l6duvw8x/overlay/local/bin/wheel to 755
2026-02-10T05:38:44,268   Successfully installed packaging-26.0 setuptools-82.0.0 wheel-0.46.3
2026-02-10T05:38:44,547   Installing build dependencies: finished with status 'done'
2026-02-10T05:38:44,554   Getting requirements to build wheel: started
2026-02-10T05:38:44,555   Running command Getting requirements to build wheel
2026-02-10T05:38:45,252   running egg_info
2026-02-10T05:38:45,257   writing torchref.egg-info/PKG-INFO
2026-02-10T05:38:45,263   writing dependency_links to torchref.egg-info/dependency_links.txt
2026-02-10T05:38:45,265   writing entry points to torchref.egg-info/entry_points.txt
2026-02-10T05:38:45,269   writing requirements to torchref.egg-info/requires.txt
2026-02-10T05:38:45,270   writing top-level names to torchref.egg-info/top_level.txt
2026-02-10T05:38:45,313   reading manifest file 'torchref.egg-info/SOURCES.txt'
2026-02-10T05:38:45,321   adding license file 'LICENSE'
2026-02-10T05:38:45,329   writing manifest file 'torchref.egg-info/SOURCES.txt'
2026-02-10T05:38:45,427   Getting requirements to build wheel: finished with status 'done'
2026-02-10T05:38:45,430   Created temporary directory: /tmp/pip-modern-metadata-zxz165fw
2026-02-10T05:38:45,432   Preparing metadata (pyproject.toml): started
2026-02-10T05:38:45,433   Running command Preparing metadata (pyproject.toml)
2026-02-10T05:38:46,080   running dist_info
2026-02-10T05:38:46,090   creating /tmp/pip-modern-metadata-zxz165fw/torchref.egg-info
2026-02-10T05:38:46,091   writing /tmp/pip-modern-metadata-zxz165fw/torchref.egg-info/PKG-INFO
2026-02-10T05:38:46,097   writing dependency_links to /tmp/pip-modern-metadata-zxz165fw/torchref.egg-info/dependency_links.txt
2026-02-10T05:38:46,099   writing entry points to /tmp/pip-modern-metadata-zxz165fw/torchref.egg-info/entry_points.txt
2026-02-10T05:38:46,103   writing requirements to /tmp/pip-modern-metadata-zxz165fw/torchref.egg-info/requires.txt
2026-02-10T05:38:46,104   writing top-level names to /tmp/pip-modern-metadata-zxz165fw/torchref.egg-info/top_level.txt
2026-02-10T05:38:46,105   writing manifest file '/tmp/pip-modern-metadata-zxz165fw/torchref.egg-info/SOURCES.txt'
2026-02-10T05:38:46,142   reading manifest file '/tmp/pip-modern-metadata-zxz165fw/torchref.egg-info/SOURCES.txt'
2026-02-10T05:38:46,143   adding license file 'LICENSE'
2026-02-10T05:38:46,149   writing manifest file '/tmp/pip-modern-metadata-zxz165fw/torchref.egg-info/SOURCES.txt'
2026-02-10T05:38:46,151   creating '/tmp/pip-modern-metadata-zxz165fw/torchref-0.3.1.dist-info'
2026-02-10T05:38:46,275   Preparing metadata (pyproject.toml): finished with status 'done'
2026-02-10T05:38:46,280   Source in /tmp/pip-wheel-vp7f8aqa/torchref_d211824bee9849c8aa143988bf39ef3f has version 0.3.1, which satisfies requirement torchref==0.3.1 from https://files.pythonhosted.org/packages/70/0e/584b23bda864347754d7b0c9fcced9ee05dc5f7d3424d8cfd74717b6bb2f/torchref-0.3.1.tar.gz
2026-02-10T05:38:46,281   Removed torchref==0.3.1 from https://files.pythonhosted.org/packages/70/0e/584b23bda864347754d7b0c9fcced9ee05dc5f7d3424d8cfd74717b6bb2f/torchref-0.3.1.tar.gz from build tracker '/tmp/pip-build-tracker-pmverxpn'
2026-02-10T05:38:46,286 WARNING: The candidate selected for download or install is a yanked version: 'torchref' candidate (version 0.3.1 at https://files.pythonhosted.org/packages/70/0e/584b23bda864347754d7b0c9fcced9ee05dc5f7d3424d8cfd74717b6bb2f/torchref-0.3.1.tar.gz (from https://pypi.org/simple/torchref/) (requires-python:>=3.9))
2026-02-10T05:38:46,286 Reason for being yanked: Deprecated, Minor bug in refinement loops
2026-02-10T05:38:46,289 Created temporary directory: /tmp/pip-unpack-gitypmme
2026-02-10T05:38:46,289 Building wheels for collected packages: torchref
2026-02-10T05:38:46,293   Created temporary directory: /tmp/pip-wheel-1j96v89o
2026-02-10T05:38:46,294   Destination directory: /tmp/pip-wheel-1j96v89o
2026-02-10T05:38:46,296   Building wheel for torchref (pyproject.toml): started
2026-02-10T05:38:46,297   Running command Building wheel for torchref (pyproject.toml)
2026-02-10T05:38:46,932   running bdist_wheel
2026-02-10T05:38:46,949   running build
2026-02-10T05:38:46,949   running build_py
2026-02-10T05:38:46,955   creating build/lib/torchref
2026-02-10T05:38:46,957   copying torchref/__init__.py -> build/lib/torchref
2026-02-10T05:38:46,959   copying torchref/_bootstrap.py -> build/lib/torchref
2026-02-10T05:38:46,961   copying torchref/config.py -> build/lib/torchref
2026-02-10T05:38:46,964   creating build/lib/torchref/restraints
2026-02-10T05:38:46,965   copying torchref/restraints/builders_numba.py -> build/lib/torchref/restraints
2026-02-10T05:38:46,968   copying torchref/restraints/__init__.py -> build/lib/torchref/restraints
2026-02-10T05:38:46,970   copying torchref/restraints/restraints_new.py -> build/lib/torchref/restraints
2026-02-10T05:38:46,974   copying torchref/restraints/restraints.py -> build/lib/torchref/restraints
2026-02-10T05:38:46,980   copying torchref/restraints/restraints_helper.py -> build/lib/torchref/restraints
2026-02-10T05:38:46,982   copying torchref/restraints/builders.py -> build/lib/torchref/restraints
2026-02-10T05:38:46,986   copying torchref/restraints/builders_fast.py -> build/lib/torchref/restraints
2026-02-10T05:38:46,990   creating build/lib/torchref/symmetry
2026-02-10T05:38:46,991   copying torchref/symmetry/grid_utils.py -> build/lib/torchref/symmetry
2026-02-10T05:38:46,993   copying torchref/symmetry/__init__.py -> build/lib/torchref/symmetry
2026-02-10T05:38:46,995   copying torchref/symmetry/cell.py -> build/lib/torchref/symmetry
2026-02-10T05:38:46,999   copying torchref/symmetry/spacegroup.py -> build/lib/torchref/symmetry
2026-02-10T05:38:47,002   copying torchref/symmetry/reciprocal_symmetry.py -> build/lib/torchref/symmetry
2026-02-10T05:38:47,005   copying torchref/symmetry/map_symmetry_interpolation.py -> build/lib/torchref/symmetry
2026-02-10T05:38:47,008   copying torchref/symmetry/map_symmetry.py -> build/lib/torchref/symmetry
2026-02-10T05:38:47,010   copying torchref/symmetry/symmetry.py -> build/lib/torchref/symmetry
2026-02-10T05:38:47,012   creating build/lib/torchref/scaling
2026-02-10T05:38:47,013   copying torchref/scaling/scaler.py -> build/lib/torchref/scaling
2026-02-10T05:38:47,016   copying torchref/scaling/__init__.py -> build/lib/torchref/scaling
2026-02-10T05:38:47,018   copying torchref/scaling/scaler_base.py -> build/lib/torchref/scaling
2026-02-10T05:38:47,021   copying torchref/scaling/solvent_new.py -> build/lib/torchref/scaling
2026-02-10T05:38:47,023   creating build/lib/torchref/refinement
2026-02-10T05:38:47,024   copying torchref/refinement/optimizers.py -> build/lib/torchref/refinement
2026-02-10T05:38:47,026   copying torchref/refinement/__init__.py -> build/lib/torchref/refinement
2026-02-10T05:38:47,028   copying torchref/refinement/base_refinement.py -> build/lib/torchref/refinement
2026-02-10T05:38:47,031   copying torchref/refinement/loss_state.py -> build/lib/torchref/refinement
2026-02-10T05:38:47,033   copying torchref/refinement/lbfgs_refinement.py -> build/lib/torchref/refinement
2026-02-10T05:38:47,036   creating build/lib/torchref/base
2026-02-10T05:38:47,037   copying torchref/base/french_wilson.py -> build/lib/torchref/base
2026-02-10T05:38:47,040   copying torchref/base/math_numpy.py -> build/lib/torchref/base
2026-02-10T05:38:47,043   copying torchref/base/math_torch.py -> build/lib/torchref/base
2026-02-10T05:38:47,045   copying torchref/base/__init__.py -> build/lib/torchref/base
2026-02-10T05:38:47,048   copying torchref/base/CCTBX_related.py -> build/lib/torchref/base
2026-02-10T05:38:47,049   copying torchref/base/get_scattering_factor_torch.py -> build/lib/torchref/base
2026-02-10T05:38:47,052   creating build/lib/torchref/utils
2026-02-10T05:38:47,053   copying torchref/utils/pse.py -> build/lib/torchref/utils
2026-02-10T05:38:47,055   copying torchref/utils/stats.py -> build/lib/torchref/utils
2026-02-10T05:38:47,057   copying torchref/utils/__init__.py -> build/lib/torchref/utils
2026-02-10T05:38:47,059   copying torchref/utils/utils.py -> build/lib/torchref/utils
2026-02-10T05:38:47,062   copying torchref/utils/hyperparameters.py -> build/lib/torchref/utils
2026-02-10T05:38:47,064   copying torchref/utils/gradnorm.py -> build/lib/torchref/utils
2026-02-10T05:38:47,066   copying torchref/utils/debug_utils.py -> build/lib/torchref/utils
2026-02-10T05:38:47,069   creating build/lib/torchref/cli
2026-02-10T05:38:47,070   copying torchref/cli/refine_screened.py -> build/lib/torchref/cli
2026-02-10T05:38:47,072   copying torchref/cli/refine.py -> build/lib/torchref/cli
2026-02-10T05:38:47,075   copying torchref/cli/refine_everything_policy.py -> build/lib/torchref/cli
2026-02-10T05:38:47,077   copying torchref/cli/__init__.py -> build/lib/torchref/cli
2026-02-10T05:38:47,079   copying torchref/cli/refine_everything_hyperparameters.py -> build/lib/torchref/cli
2026-02-10T05:38:47,082   copying torchref/cli/refine_everything_static.py -> build/lib/torchref/cli
2026-02-10T05:38:47,084   copying torchref/cli/refine_everything_random_weights.py -> build/lib/torchref/cli
2026-02-10T05:38:47,086   copying torchref/cli/refine_everything.py -> build/lib/torchref/cli
2026-02-10T05:38:47,089   creating build/lib/torchref/alignment
2026-02-10T05:38:47,090   copying torchref/alignment/distributions.py -> build/lib/torchref/alignment
2026-02-10T05:38:47,093   copying torchref/alignment/__init__.py -> build/lib/torchref/alignment
2026-02-10T05:38:47,095   copying torchref/alignment/translation.py -> build/lib/torchref/alignment
2026-02-10T05:38:47,097   copying torchref/alignment/transform.py -> build/lib/torchref/alignment
2026-02-10T05:38:47,099   copying torchref/alignment/pipeline.py -> build/lib/torchref/alignment
2026-02-10T05:38:47,102   copying torchref/alignment/ball_transform.py -> build/lib/torchref/alignment
2026-02-10T05:38:47,105   copying torchref/alignment/clashscore.py -> build/lib/torchref/alignment
2026-02-10T05:38:47,108   copying torchref/alignment/jax_subpixel_peaks.py -> build/lib/torchref/alignment
2026-02-10T05:38:47,110   copying torchref/alignment/sampling.py -> build/lib/torchref/alignment
2026-02-10T05:38:47,112   copying torchref/alignment/rigid_body.py -> build/lib/torchref/alignment
2026-02-10T05:38:47,115   creating build/lib/torchref/io
2026-02-10T05:38:47,116   copying torchref/io/data_router.py -> build/lib/torchref/io
2026-02-10T05:38:47,118   copying torchref/io/__init__.py -> build/lib/torchref/io
2026-02-10T05:38:47,120   copying torchref/io/pdb.py -> build/lib/torchref/io
2026-02-10T05:38:47,122   copying torchref/io/cif.py -> build/lib/torchref/io
2026-02-10T05:38:47,124   copying torchref/io/mtz.py -> build/lib/torchref/io
2026-02-10T05:38:47,126   copying torchref/io/cif_readers.py -> build/lib/torchref/io
2026-02-10T05:38:47,130   creating build/lib/torchref/model
2026-02-10T05:38:47,131   copying torchref/model/parameter_wrappers.py -> build/lib/torchref/model
2026-02-10T05:38:47,136   copying torchref/model/fft.py -> build/lib/torchref/model
2026-02-10T05:38:47,138   copying torchref/model/__init__.py -> build/lib/torchref/model
2026-02-10T05:38:47,140   copying torchref/model/simple_model.py -> build/lib/torchref/model
2026-02-10T05:38:47,142   copying torchref/model/model_ft.py -> build/lib/torchref/model
2026-02-10T05:38:47,145   copying torchref/model/model.py -> build/lib/torchref/model
2026-02-10T05:38:47,148   creating build/lib/torchref/refinement/targets
2026-02-10T05:38:47,149   copying torchref/refinement/targets/combined_targets.py -> build/lib/torchref/refinement/targets
2026-02-10T05:38:47,152   copying torchref/refinement/targets/__init__.py -> build/lib/torchref/refinement/targets
2026-02-10T05:38:47,154   copying torchref/refinement/targets/targets.py -> build/lib/torchref/refinement/targets
2026-02-10T05:38:47,157   creating build/lib/torchref/refinement/weighting
2026-02-10T05:38:47,158   copying torchref/refinement/weighting/component_weighting.py -> build/lib/torchref/refinement/weighting
2026-02-10T05:38:47,161   copying torchref/refinement/weighting/__init__.py -> build/lib/torchref/refinement/weighting
2026-02-10T05:38:47,163   copying torchref/refinement/weighting/es_policy_training.py -> build/lib/torchref/refinement/weighting
2026-02-10T05:38:47,166   copying torchref/refinement/weighting/base_weighting.py -> build/lib/torchref/refinement/weighting
2026-02-10T05:38:47,168   copying torchref/refinement/weighting/policy_weighting.py -> build/lib/torchref/refinement/weighting
2026-02-10T05:38:47,171   copying torchref/refinement/weighting/random_weighting.py -> build/lib/torchref/refinement/weighting
2026-02-10T05:38:47,174   creating build/lib/torchref/base/fourier
2026-02-10T05:38:47,175   copying torchref/base/fourier/fft.py -> build/lib/torchref/base/fourier
2026-02-10T05:38:47,177   copying torchref/base/fourier/__init__.py -> build/lib/torchref/base/fourier
2026-02-10T05:38:47,179   copying torchref/base/fourier/grid.py -> build/lib/torchref/base/fourier
2026-02-10T05:38:47,182   creating build/lib/torchref/base/coordinates
2026-02-10T05:38:47,183   copying torchref/base/coordinates/transforms_torch.py -> build/lib/torchref/base/coordinates
2026-02-10T05:38:47,185   copying torchref/base/coordinates/__init__.py -> build/lib/torchref/base/coordinates
2026-02-10T05:38:47,186   copying torchref/base/coordinates/transforms_numpy.py -> build/lib/torchref/base/coordinates
2026-02-10T05:38:47,188   copying torchref/base/coordinates/periodic_boundary.py -> build/lib/torchref/base/coordinates
2026-02-10T05:38:47,191   creating build/lib/torchref/base/scattering
2026-02-10T05:38:47,192   copying torchref/base/scattering/__init__.py -> build/lib/torchref/base/scattering
2026-02-10T05:38:47,193   copying torchref/base/scattering/itc92.py -> build/lib/torchref/base/scattering
2026-02-10T05:38:47,196   creating build/lib/torchref/base/metrics
2026-02-10T05:38:47,197   copying torchref/base/metrics/rfactor.py -> build/lib/torchref/base/metrics
2026-02-10T05:38:47,200   copying torchref/base/metrics/__init__.py -> build/lib/torchref/base/metrics
2026-02-10T05:38:47,201   copying torchref/base/metrics/loss.py -> build/lib/torchref/base/metrics
2026-02-10T05:38:47,204   creating build/lib/torchref/base/structure_factors
2026-02-10T05:38:47,205   copying torchref/base/structure_factors/__init__.py -> build/lib/torchref/base/structure_factors
2026-02-10T05:38:47,207   copying torchref/base/structure_factors/corrections.py -> build/lib/torchref/base/structure_factors
2026-02-10T05:38:47,209   copying torchref/base/structure_factors/isotropic.py -> build/lib/torchref/base/structure_factors
2026-02-10T05:38:47,210   copying torchref/base/structure_factors/anisotropic.py -> build/lib/torchref/base/structure_factors
2026-02-10T05:38:47,213   creating build/lib/torchref/base/alignment
2026-02-10T05:38:47,214   copying torchref/base/alignment/__init__.py -> build/lib/torchref/base/alignment
2026-02-10T05:38:47,216   copying torchref/base/alignment/scoring.py -> build/lib/torchref/base/alignment
2026-02-10T05:38:47,217   copying torchref/base/alignment/superposition.py -> build/lib/torchref/base/alignment
2026-02-10T05:38:47,220   copying torchref/base/alignment/rotation.py -> build/lib/torchref/base/alignment
2026-02-10T05:38:47,222   copying torchref/base/alignment/normalization.py -> build/lib/torchref/base/alignment
2026-02-10T05:38:47,225   creating build/lib/torchref/base/reciprocal
2026-02-10T05:38:47,226   copying torchref/base/reciprocal/hkl.py -> build/lib/torchref/base/reciprocal
2026-02-10T05:38:47,229   copying torchref/base/reciprocal/__init__.py -> build/lib/torchref/base/reciprocal
2026-02-10T05:38:47,231   copying torchref/base/reciprocal/interpolation.py -> build/lib/torchref/base/reciprocal
2026-02-10T05:38:47,233   copying torchref/base/reciprocal/grid_operations.py -> build/lib/torchref/base/reciprocal
2026-02-10T05:38:47,235   copying torchref/base/reciprocal/symmetry.py -> build/lib/torchref/base/reciprocal
2026-02-10T05:38:47,237   copying torchref/base/reciprocal/basis.py -> build/lib/torchref/base/reciprocal
2026-02-10T05:38:47,240   creating build/lib/torchref/base/kernels
2026-02-10T05:38:47,241   copying torchref/base/kernels/__init__.py -> build/lib/torchref/base/kernels
2026-02-10T05:38:47,243   copying torchref/base/kernels/jit_kernel_vectorized_add_to_map.py -> build/lib/torchref/base/kernels
2026-02-10T05:38:47,246   copying torchref/base/kernels/optimized_ops.py -> build/lib/torchref/base/kernels
2026-02-10T05:38:47,249   creating build/lib/torchref/base/electron_density
2026-02-10T05:38:47,250   copying torchref/base/electron_density/__init__.py -> build/lib/torchref/base/electron_density
2026-02-10T05:38:47,252   copying torchref/base/electron_density/map_building.py -> build/lib/torchref/base/electron_density
2026-02-10T05:38:47,254   copying torchref/base/electron_density/solvent_mask.py -> build/lib/torchref/base/electron_density
2026-02-10T05:38:47,256   copying torchref/base/electron_density/voxel_utils.py -> build/lib/torchref/base/electron_density
2026-02-10T05:38:47,259   creating build/lib/torchref/io/datasets
2026-02-10T05:38:47,260   copying torchref/io/datasets/base.py -> build/lib/torchref/io/datasets
2026-02-10T05:38:47,262   copying torchref/io/datasets/__init__.py -> build/lib/torchref/io/datasets
2026-02-10T05:38:47,264   copying torchref/io/datasets/collection.py -> build/lib/torchref/io/datasets
2026-02-10T05:38:47,267   copying torchref/io/datasets/reflection_data.py -> build/lib/torchref/io/datasets
2026-02-10T05:38:47,271   running egg_info
2026-02-10T05:38:47,280   writing torchref.egg-info/PKG-INFO
2026-02-10T05:38:47,286   writing dependency_links to torchref.egg-info/dependency_links.txt
2026-02-10T05:38:47,288   writing entry points to torchref.egg-info/entry_points.txt
2026-02-10T05:38:47,291   writing requirements to torchref.egg-info/requires.txt
2026-02-10T05:38:47,292   writing top-level names to torchref.egg-info/top_level.txt
2026-02-10T05:38:47,319   reading manifest file 'torchref.egg-info/SOURCES.txt'
2026-02-10T05:38:47,327   adding license file 'LICENSE'
2026-02-10T05:38:47,334   writing manifest file 'torchref.egg-info/SOURCES.txt'
2026-02-10T05:38:47,365   installing to build/bdist.linux-armv7l/wheel
2026-02-10T05:38:47,366   running install
2026-02-10T05:38:47,389   running install_lib
2026-02-10T05:38:47,394   creating build/bdist.linux-armv7l/wheel
2026-02-10T05:38:47,396   creating build/bdist.linux-armv7l/wheel/torchref
2026-02-10T05:38:47,398   creating build/bdist.linux-armv7l/wheel/torchref/restraints
2026-02-10T05:38:47,399   copying build/lib/torchref/restraints/builders_numba.py -> build/bdist.linux-armv7l/wheel/./torchref/restraints
2026-02-10T05:38:47,402   copying build/lib/torchref/restraints/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/restraints
2026-02-10T05:38:47,404   copying build/lib/torchref/restraints/restraints_new.py -> build/bdist.linux-armv7l/wheel/./torchref/restraints
2026-02-10T05:38:47,407   copying build/lib/torchref/restraints/restraints.py -> build/bdist.linux-armv7l/wheel/./torchref/restraints
2026-02-10T05:38:47,412   copying build/lib/torchref/restraints/restraints_helper.py -> build/bdist.linux-armv7l/wheel/./torchref/restraints
2026-02-10T05:38:47,414   copying build/lib/torchref/restraints/builders.py -> build/bdist.linux-armv7l/wheel/./torchref/restraints
2026-02-10T05:38:47,418   copying build/lib/torchref/restraints/builders_fast.py -> build/bdist.linux-armv7l/wheel/./torchref/restraints
2026-02-10T05:38:47,421   creating build/bdist.linux-armv7l/wheel/torchref/symmetry
2026-02-10T05:38:47,422   copying build/lib/torchref/symmetry/grid_utils.py -> build/bdist.linux-armv7l/wheel/./torchref/symmetry
2026-02-10T05:38:47,425   copying build/lib/torchref/symmetry/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/symmetry
2026-02-10T05:38:47,426   copying build/lib/torchref/symmetry/cell.py -> build/bdist.linux-armv7l/wheel/./torchref/symmetry
2026-02-10T05:38:47,429   copying build/lib/torchref/symmetry/spacegroup.py -> build/bdist.linux-armv7l/wheel/./torchref/symmetry
2026-02-10T05:38:47,431   copying build/lib/torchref/symmetry/reciprocal_symmetry.py -> build/bdist.linux-armv7l/wheel/./torchref/symmetry
2026-02-10T05:38:47,434   copying build/lib/torchref/symmetry/map_symmetry_interpolation.py -> build/bdist.linux-armv7l/wheel/./torchref/symmetry
2026-02-10T05:38:47,437   copying build/lib/torchref/symmetry/map_symmetry.py -> build/bdist.linux-armv7l/wheel/./torchref/symmetry
2026-02-10T05:38:47,439   copying build/lib/torchref/symmetry/symmetry.py -> build/bdist.linux-armv7l/wheel/./torchref/symmetry
2026-02-10T05:38:47,441   copying build/lib/torchref/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref
2026-02-10T05:38:47,443   creating build/bdist.linux-armv7l/wheel/torchref/scaling
2026-02-10T05:38:47,444   copying build/lib/torchref/scaling/scaler.py -> build/bdist.linux-armv7l/wheel/./torchref/scaling
2026-02-10T05:38:47,447   copying build/lib/torchref/scaling/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/scaling
2026-02-10T05:38:47,449   copying build/lib/torchref/scaling/scaler_base.py -> build/bdist.linux-armv7l/wheel/./torchref/scaling
2026-02-10T05:38:47,451   copying build/lib/torchref/scaling/solvent_new.py -> build/bdist.linux-armv7l/wheel/./torchref/scaling
2026-02-10T05:38:47,455   creating build/bdist.linux-armv7l/wheel/torchref/refinement
2026-02-10T05:38:47,456   copying build/lib/torchref/refinement/optimizers.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement
2026-02-10T05:38:47,458   copying build/lib/torchref/refinement/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement
2026-02-10T05:38:47,460   creating build/bdist.linux-armv7l/wheel/torchref/refinement/targets
2026-02-10T05:38:47,461   copying build/lib/torchref/refinement/targets/combined_targets.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets
2026-02-10T05:38:47,464   copying build/lib/torchref/refinement/targets/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets
2026-02-10T05:38:47,465   copying build/lib/torchref/refinement/targets/targets.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets
2026-02-10T05:38:47,469   copying build/lib/torchref/refinement/base_refinement.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement
2026-02-10T05:38:47,472   creating build/bdist.linux-armv7l/wheel/torchref/refinement/weighting
2026-02-10T05:38:47,473   copying build/lib/torchref/refinement/weighting/component_weighting.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/weighting
2026-02-10T05:38:47,476   copying build/lib/torchref/refinement/weighting/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/weighting
2026-02-10T05:38:47,478   copying build/lib/torchref/refinement/weighting/es_policy_training.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/weighting
2026-02-10T05:38:47,480   copying build/lib/torchref/refinement/weighting/base_weighting.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/weighting
2026-02-10T05:38:47,482   copying build/lib/torchref/refinement/weighting/policy_weighting.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/weighting
2026-02-10T05:38:47,484   copying build/lib/torchref/refinement/weighting/random_weighting.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/weighting
2026-02-10T05:38:47,487   copying build/lib/torchref/refinement/loss_state.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement
2026-02-10T05:38:47,489   copying build/lib/torchref/refinement/lbfgs_refinement.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement
2026-02-10T05:38:47,493   creating build/bdist.linux-armv7l/wheel/torchref/base
2026-02-10T05:38:47,494   copying build/lib/torchref/base/french_wilson.py -> build/bdist.linux-armv7l/wheel/./torchref/base
2026-02-10T05:38:47,496   copying build/lib/torchref/base/math_numpy.py -> build/bdist.linux-armv7l/wheel/./torchref/base
2026-02-10T05:38:47,500   creating build/bdist.linux-armv7l/wheel/torchref/base/fourier
2026-02-10T05:38:47,501   copying build/lib/torchref/base/fourier/fft.py -> build/bdist.linux-armv7l/wheel/./torchref/base/fourier
2026-02-10T05:38:47,503   copying build/lib/torchref/base/fourier/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base/fourier
2026-02-10T05:38:47,505   copying build/lib/torchref/base/fourier/grid.py -> build/bdist.linux-armv7l/wheel/./torchref/base/fourier
2026-02-10T05:38:47,507   copying build/lib/torchref/base/math_torch.py -> build/bdist.linux-armv7l/wheel/./torchref/base
2026-02-10T05:38:47,509   copying build/lib/torchref/base/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base
2026-02-10T05:38:47,512   creating build/bdist.linux-armv7l/wheel/torchref/base/coordinates
2026-02-10T05:38:47,513   copying build/lib/torchref/base/coordinates/transforms_torch.py -> build/bdist.linux-armv7l/wheel/./torchref/base/coordinates
2026-02-10T05:38:47,515   copying build/lib/torchref/base/coordinates/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base/coordinates
2026-02-10T05:38:47,517   copying build/lib/torchref/base/coordinates/transforms_numpy.py -> build/bdist.linux-armv7l/wheel/./torchref/base/coordinates
2026-02-10T05:38:47,519   copying build/lib/torchref/base/coordinates/periodic_boundary.py -> build/bdist.linux-armv7l/wheel/./torchref/base/coordinates
2026-02-10T05:38:47,521   creating build/bdist.linux-armv7l/wheel/torchref/base/scattering
2026-02-10T05:38:47,522   copying build/lib/torchref/base/scattering/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base/scattering
2026-02-10T05:38:47,524   copying build/lib/torchref/base/scattering/itc92.py -> build/bdist.linux-armv7l/wheel/./torchref/base/scattering
2026-02-10T05:38:47,527   creating build/bdist.linux-armv7l/wheel/torchref/base/metrics
2026-02-10T05:38:47,528   copying build/lib/torchref/base/metrics/rfactor.py -> build/bdist.linux-armv7l/wheel/./torchref/base/metrics
2026-02-10T05:38:47,530   copying build/lib/torchref/base/metrics/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base/metrics
2026-02-10T05:38:47,532   copying build/lib/torchref/base/metrics/loss.py -> build/bdist.linux-armv7l/wheel/./torchref/base/metrics
2026-02-10T05:38:47,534   copying build/lib/torchref/base/CCTBX_related.py -> build/bdist.linux-armv7l/wheel/./torchref/base
2026-02-10T05:38:47,536   creating build/bdist.linux-armv7l/wheel/torchref/base/structure_factors
2026-02-10T05:38:47,538   copying build/lib/torchref/base/structure_factors/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base/structure_factors
2026-02-10T05:38:47,539   copying build/lib/torchref/base/structure_factors/corrections.py -> build/bdist.linux-armv7l/wheel/./torchref/base/structure_factors
2026-02-10T05:38:47,541   copying build/lib/torchref/base/structure_factors/isotropic.py -> build/bdist.linux-armv7l/wheel/./torchref/base/structure_factors
2026-02-10T05:38:47,543   copying build/lib/torchref/base/structure_factors/anisotropic.py -> build/bdist.linux-armv7l/wheel/./torchref/base/structure_factors
2026-02-10T05:38:47,545   creating build/bdist.linux-armv7l/wheel/torchref/base/alignment
2026-02-10T05:38:47,546   copying build/lib/torchref/base/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base/alignment
2026-02-10T05:38:47,548   copying build/lib/torchref/base/alignment/scoring.py -> build/bdist.linux-armv7l/wheel/./torchref/base/alignment
2026-02-10T05:38:47,550   copying build/lib/torchref/base/alignment/superposition.py -> build/bdist.linux-armv7l/wheel/./torchref/base/alignment
2026-02-10T05:38:47,552   copying build/lib/torchref/base/alignment/rotation.py -> build/bdist.linux-armv7l/wheel/./torchref/base/alignment
2026-02-10T05:38:47,554   copying build/lib/torchref/base/alignment/normalization.py -> build/bdist.linux-armv7l/wheel/./torchref/base/alignment
2026-02-10T05:38:47,557   creating build/bdist.linux-armv7l/wheel/torchref/base/reciprocal
2026-02-10T05:38:47,557   copying build/lib/torchref/base/reciprocal/hkl.py -> build/bdist.linux-armv7l/wheel/./torchref/base/reciprocal
2026-02-10T05:38:47,559   copying build/lib/torchref/base/reciprocal/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base/reciprocal
2026-02-10T05:38:47,561   copying build/lib/torchref/base/reciprocal/interpolation.py -> build/bdist.linux-armv7l/wheel/./torchref/base/reciprocal
2026-02-10T05:38:47,564   copying build/lib/torchref/base/reciprocal/grid_operations.py -> build/bdist.linux-armv7l/wheel/./torchref/base/reciprocal
2026-02-10T05:38:47,566   copying build/lib/torchref/base/reciprocal/symmetry.py -> build/bdist.linux-armv7l/wheel/./torchref/base/reciprocal
2026-02-10T05:38:47,568   copying build/lib/torchref/base/reciprocal/basis.py -> build/bdist.linux-armv7l/wheel/./torchref/base/reciprocal
2026-02-10T05:38:47,571   copying build/lib/torchref/base/get_scattering_factor_torch.py -> build/bdist.linux-armv7l/wheel/./torchref/base
2026-02-10T05:38:47,573   creating build/bdist.linux-armv7l/wheel/torchref/base/kernels
2026-02-10T05:38:47,574   copying build/lib/torchref/base/kernels/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base/kernels
2026-02-10T05:38:47,576   copying build/lib/torchref/base/kernels/jit_kernel_vectorized_add_to_map.py -> build/bdist.linux-armv7l/wheel/./torchref/base/kernels
2026-02-10T05:38:47,579   copying build/lib/torchref/base/kernels/optimized_ops.py -> build/bdist.linux-armv7l/wheel/./torchref/base/kernels
2026-02-10T05:38:47,582   creating build/bdist.linux-armv7l/wheel/torchref/base/electron_density
2026-02-10T05:38:47,583   copying build/lib/torchref/base/electron_density/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base/electron_density
2026-02-10T05:38:47,585   copying build/lib/torchref/base/electron_density/map_building.py -> build/bdist.linux-armv7l/wheel/./torchref/base/electron_density
2026-02-10T05:38:47,587   copying build/lib/torchref/base/electron_density/solvent_mask.py -> build/bdist.linux-armv7l/wheel/./torchref/base/electron_density
2026-02-10T05:38:47,589   copying build/lib/torchref/base/electron_density/voxel_utils.py -> build/bdist.linux-armv7l/wheel/./torchref/base/electron_density
2026-02-10T05:38:47,592   creating build/bdist.linux-armv7l/wheel/torchref/utils
2026-02-10T05:38:47,593   copying build/lib/torchref/utils/pse.py -> build/bdist.linux-armv7l/wheel/./torchref/utils
2026-02-10T05:38:47,595   copying build/lib/torchref/utils/stats.py -> build/bdist.linux-armv7l/wheel/./torchref/utils
2026-02-10T05:38:47,598   copying build/lib/torchref/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/utils
2026-02-10T05:38:47,599   copying build/lib/torchref/utils/utils.py -> build/bdist.linux-armv7l/wheel/./torchref/utils
2026-02-10T05:38:47,602   copying build/lib/torchref/utils/hyperparameters.py -> build/bdist.linux-armv7l/wheel/./torchref/utils
2026-02-10T05:38:47,604   copying build/lib/torchref/utils/gradnorm.py -> build/bdist.linux-armv7l/wheel/./torchref/utils
2026-02-10T05:38:47,606   copying build/lib/torchref/utils/debug_utils.py -> build/bdist.linux-armv7l/wheel/./torchref/utils
2026-02-10T05:38:47,608   copying build/lib/torchref/_bootstrap.py -> build/bdist.linux-armv7l/wheel/./torchref
2026-02-10T05:38:47,610   creating build/bdist.linux-armv7l/wheel/torchref/cli
2026-02-10T05:38:47,611   copying build/lib/torchref/cli/refine_screened.py -> build/bdist.linux-armv7l/wheel/./torchref/cli
2026-02-10T05:38:47,613   copying build/lib/torchref/cli/refine.py -> build/bdist.linux-armv7l/wheel/./torchref/cli
2026-02-10T05:38:47,616   copying build/lib/torchref/cli/refine_everything_policy.py -> build/bdist.linux-armv7l/wheel/./torchref/cli
2026-02-10T05:38:47,618   copying build/lib/torchref/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/cli
2026-02-10T05:38:47,620   copying build/lib/torchref/cli/refine_everything_hyperparameters.py -> build/bdist.linux-armv7l/wheel/./torchref/cli
2026-02-10T05:38:47,622   copying build/lib/torchref/cli/refine_everything_static.py -> build/bdist.linux-armv7l/wheel/./torchref/cli
2026-02-10T05:38:47,624   copying build/lib/torchref/cli/refine_everything_random_weights.py -> build/bdist.linux-armv7l/wheel/./torchref/cli
2026-02-10T05:38:47,626   copying build/lib/torchref/cli/refine_everything.py -> build/bdist.linux-armv7l/wheel/./torchref/cli
2026-02-10T05:38:47,629   creating build/bdist.linux-armv7l/wheel/torchref/alignment
2026-02-10T05:38:47,630   copying build/lib/torchref/alignment/distributions.py -> build/bdist.linux-armv7l/wheel/./torchref/alignment
2026-02-10T05:38:47,633   copying build/lib/torchref/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/alignment
2026-02-10T05:38:47,635   copying build/lib/torchref/alignment/translation.py -> build/bdist.linux-armv7l/wheel/./torchref/alignment
2026-02-10T05:38:47,637   copying build/lib/torchref/alignment/transform.py -> build/bdist.linux-armv7l/wheel/./torchref/alignment
2026-02-10T05:38:47,639   copying build/lib/torchref/alignment/pipeline.py -> build/bdist.linux-armv7l/wheel/./torchref/alignment
2026-02-10T05:38:47,642   copying build/lib/torchref/alignment/ball_transform.py -> build/bdist.linux-armv7l/wheel/./torchref/alignment
2026-02-10T05:38:47,645   copying build/lib/torchref/alignment/clashscore.py -> build/bdist.linux-armv7l/wheel/./torchref/alignment
2026-02-10T05:38:47,647   copying build/lib/torchref/alignment/jax_subpixel_peaks.py -> build/bdist.linux-armv7l/wheel/./torchref/alignment
2026-02-10T05:38:47,649   copying build/lib/torchref/alignment/sampling.py -> build/bdist.linux-armv7l/wheel/./torchref/alignment
2026-02-10T05:38:47,652   copying build/lib/torchref/alignment/rigid_body.py -> build/bdist.linux-armv7l/wheel/./torchref/alignment
2026-02-10T05:38:47,655   creating build/bdist.linux-armv7l/wheel/torchref/io
2026-02-10T05:38:47,656   copying build/lib/torchref/io/data_router.py -> build/bdist.linux-armv7l/wheel/./torchref/io
2026-02-10T05:38:47,658   copying build/lib/torchref/io/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/io
2026-02-10T05:38:47,660   copying build/lib/torchref/io/pdb.py -> build/bdist.linux-armv7l/wheel/./torchref/io
2026-02-10T05:38:47,662   copying build/lib/torchref/io/cif.py -> build/bdist.linux-armv7l/wheel/./torchref/io
2026-02-10T05:38:47,664   copying build/lib/torchref/io/mtz.py -> build/bdist.linux-armv7l/wheel/./torchref/io
2026-02-10T05:38:47,667   creating build/bdist.linux-armv7l/wheel/torchref/io/datasets
2026-02-10T05:38:47,668   copying build/lib/torchref/io/datasets/base.py -> build/bdist.linux-armv7l/wheel/./torchref/io/datasets
2026-02-10T05:38:47,670   copying build/lib/torchref/io/datasets/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/io/datasets
2026-02-10T05:38:47,672   copying build/lib/torchref/io/datasets/collection.py -> build/bdist.linux-armv7l/wheel/./torchref/io/datasets
2026-02-10T05:38:47,674   copying build/lib/torchref/io/datasets/reflection_data.py -> build/bdist.linux-armv7l/wheel/./torchref/io/datasets
2026-02-10T05:38:47,678   copying build/lib/torchref/io/cif_readers.py -> build/bdist.linux-armv7l/wheel/./torchref/io
2026-02-10T05:38:47,681   copying build/lib/torchref/config.py -> build/bdist.linux-armv7l/wheel/./torchref
2026-02-10T05:38:47,684   creating build/bdist.linux-armv7l/wheel/torchref/model
2026-02-10T05:38:47,685   copying build/lib/torchref/model/parameter_wrappers.py -> build/bdist.linux-armv7l/wheel/./torchref/model
2026-02-10T05:38:47,689   copying build/lib/torchref/model/fft.py -> build/bdist.linux-armv7l/wheel/./torchref/model
2026-02-10T05:38:47,691   copying build/lib/torchref/model/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/model
2026-02-10T05:38:47,693   copying build/lib/torchref/model/simple_model.py -> build/bdist.linux-armv7l/wheel/./torchref/model
2026-02-10T05:38:47,695   copying build/lib/torchref/model/model_ft.py -> build/bdist.linux-armv7l/wheel/./torchref/model
2026-02-10T05:38:47,698   copying build/lib/torchref/model/model.py -> build/bdist.linux-armv7l/wheel/./torchref/model
2026-02-10T05:38:47,702   running install_egg_info
2026-02-10T05:38:47,707   Copying torchref.egg-info to build/bdist.linux-armv7l/wheel/./torchref-0.3.1-py3.11.egg-info
2026-02-10T05:38:47,719   running install_scripts
2026-02-10T05:38:47,730   creating build/bdist.linux-armv7l/wheel/torchref-0.3.1.dist-info/WHEEL
2026-02-10T05:38:47,733   creating '/tmp/pip-wheel-1j96v89o/.tmp-etefj5xd/torchref-0.3.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-02-10T05:38:47,736   adding 'torchref/__init__.py'
2026-02-10T05:38:47,738   adding 'torchref/_bootstrap.py'
2026-02-10T05:38:47,739   adding 'torchref/config.py'
2026-02-10T05:38:47,742   adding 'torchref/alignment/__init__.py'
2026-02-10T05:38:47,750   adding 'torchref/alignment/ball_transform.py'
2026-02-10T05:38:47,752   adding 'torchref/alignment/clashscore.py'
2026-02-10T05:38:47,754   adding 'torchref/alignment/distributions.py'
2026-02-10T05:38:47,756   adding 'torchref/alignment/jax_subpixel_peaks.py'
2026-02-10T05:38:47,759   adding 'torchref/alignment/pipeline.py'
2026-02-10T05:38:47,762   adding 'torchref/alignment/rigid_body.py'
2026-02-10T05:38:47,764   adding 'torchref/alignment/sampling.py'
2026-02-10T05:38:47,767   adding 'torchref/alignment/transform.py'
2026-02-10T05:38:47,770   adding 'torchref/alignment/translation.py'
2026-02-10T05:38:47,772   adding 'torchref/base/CCTBX_related.py'
2026-02-10T05:38:47,774   adding 'torchref/base/__init__.py'
2026-02-10T05:38:47,778   adding 'torchref/base/french_wilson.py'
2026-02-10T05:38:47,780   adding 'torchref/base/get_scattering_factor_torch.py'
2026-02-10T05:38:47,784   adding 'torchref/base/math_numpy.py'
2026-02-10T05:38:47,786   adding 'torchref/base/math_torch.py'
2026-02-10T05:38:47,788   adding 'torchref/base/alignment/__init__.py'
2026-02-10T05:38:47,791   adding 'torchref/base/alignment/normalization.py'
2026-02-10T05:38:47,793   adding 'torchref/base/alignment/rotation.py'
2026-02-10T05:38:47,795   adding 'torchref/base/alignment/scoring.py'
2026-02-10T05:38:47,797   adding 'torchref/base/alignment/superposition.py'
2026-02-10T05:38:47,799   adding 'torchref/base/coordinates/__init__.py'
2026-02-10T05:38:47,801   adding 'torchref/base/coordinates/periodic_boundary.py'
2026-02-10T05:38:47,802   adding 'torchref/base/coordinates/transforms_numpy.py'
2026-02-10T05:38:47,804   adding 'torchref/base/coordinates/transforms_torch.py'
2026-02-10T05:38:47,806   adding 'torchref/base/electron_density/__init__.py'
2026-02-10T05:38:47,808   adding 'torchref/base/electron_density/map_building.py'
2026-02-10T05:38:47,810   adding 'torchref/base/electron_density/solvent_mask.py'
2026-02-10T05:38:47,812   adding 'torchref/base/electron_density/voxel_utils.py'
2026-02-10T05:38:47,814   adding 'torchref/base/fourier/__init__.py'
2026-02-10T05:38:47,816   adding 'torchref/base/fourier/fft.py'
2026-02-10T05:38:47,818   adding 'torchref/base/fourier/grid.py'
2026-02-10T05:38:47,820   adding 'torchref/base/kernels/__init__.py'
2026-02-10T05:38:47,822   adding 'torchref/base/kernels/jit_kernel_vectorized_add_to_map.py'
2026-02-10T05:38:47,824   adding 'torchref/base/kernels/optimized_ops.py'
2026-02-10T05:38:47,825   adding 'torchref/base/metrics/__init__.py'
2026-02-10T05:38:47,827   adding 'torchref/base/metrics/loss.py'
2026-02-10T05:38:47,829   adding 'torchref/base/metrics/rfactor.py'
2026-02-10T05:38:47,830   adding 'torchref/base/reciprocal/__init__.py'
2026-02-10T05:38:47,832   adding 'torchref/base/reciprocal/basis.py'
2026-02-10T05:38:47,833   adding 'torchref/base/reciprocal/grid_operations.py'
2026-02-10T05:38:47,835   adding 'torchref/base/reciprocal/hkl.py'
2026-02-10T05:38:47,837   adding 'torchref/base/reciprocal/interpolation.py'
2026-02-10T05:38:47,839   adding 'torchref/base/reciprocal/symmetry.py'
2026-02-10T05:38:47,840   adding 'torchref/base/scattering/__init__.py'
2026-02-10T05:38:47,842   adding 'torchref/base/scattering/itc92.py'
2026-02-10T05:38:47,844   adding 'torchref/base/structure_factors/__init__.py'
2026-02-10T05:38:47,845   adding 'torchref/base/structure_factors/anisotropic.py'
2026-02-10T05:38:47,846   adding 'torchref/base/structure_factors/corrections.py'
2026-02-10T05:38:47,848   adding 'torchref/base/structure_factors/isotropic.py'
2026-02-10T05:38:47,849   adding 'torchref/cli/__init__.py'
2026-02-10T05:38:47,851   adding 'torchref/cli/refine.py'
2026-02-10T05:38:47,853   adding 'torchref/cli/refine_everything.py'
2026-02-10T05:38:47,855   adding 'torchref/cli/refine_everything_hyperparameters.py'
2026-02-10T05:38:47,857   adding 'torchref/cli/refine_everything_policy.py'
2026-02-10T05:38:47,859   adding 'torchref/cli/refine_everything_random_weights.py'
2026-02-10T05:38:47,861   adding 'torchref/cli/refine_everything_static.py'
2026-02-10T05:38:47,863   adding 'torchref/cli/refine_screened.py'
2026-02-10T05:38:47,865   adding 'torchref/io/__init__.py'
2026-02-10T05:38:47,866   adding 'torchref/io/cif.py'
2026-02-10T05:38:47,874   adding 'torchref/io/cif_readers.py'
2026-02-10T05:38:47,876   adding 'torchref/io/data_router.py'
2026-02-10T05:38:47,878   adding 'torchref/io/mtz.py'
2026-02-10T05:38:47,880   adding 'torchref/io/pdb.py'
2026-02-10T05:38:47,882   adding 'torchref/io/datasets/__init__.py'
2026-02-10T05:38:47,884   adding 'torchref/io/datasets/base.py'
2026-02-10T05:38:47,886   adding 'torchref/io/datasets/collection.py'
2026-02-10T05:38:47,897   adding 'torchref/io/datasets/reflection_data.py'
2026-02-10T05:38:47,899   adding 'torchref/model/__init__.py'
2026-02-10T05:38:47,902   adding 'torchref/model/fft.py'
2026-02-10T05:38:47,910   adding 'torchref/model/model.py'
2026-02-10T05:38:47,915   adding 'torchref/model/model_ft.py'
2026-02-10T05:38:47,923   adding 'torchref/model/parameter_wrappers.py'
2026-02-10T05:38:47,926   adding 'torchref/model/simple_model.py'
2026-02-10T05:38:47,928   adding 'torchref/refinement/__init__.py'
2026-02-10T05:38:47,932   adding 'torchref/refinement/base_refinement.py'
2026-02-10T05:38:47,937   adding 'torchref/refinement/lbfgs_refinement.py'
2026-02-10T05:38:47,939   adding 'torchref/refinement/loss_state.py'
2026-02-10T05:38:47,941   adding 'torchref/refinement/optimizers.py'
2026-02-10T05:38:47,943   adding 'torchref/refinement/targets/__init__.py'
2026-02-10T05:38:47,945   adding 'torchref/refinement/targets/combined_targets.py'
2026-02-10T05:38:47,953   adding 'torchref/refinement/targets/targets.py'
2026-02-10T05:38:47,955   adding 'torchref/refinement/weighting/__init__.py'
2026-02-10T05:38:47,956   adding 'torchref/refinement/weighting/base_weighting.py'
2026-02-10T05:38:47,959   adding 'torchref/refinement/weighting/component_weighting.py'
2026-02-10T05:38:47,961   adding 'torchref/refinement/weighting/es_policy_training.py'
2026-02-10T05:38:47,964   adding 'torchref/refinement/weighting/policy_weighting.py'
2026-02-10T05:38:47,967   adding 'torchref/refinement/weighting/random_weighting.py'
2026-02-10T05:38:47,969   adding 'torchref/restraints/__init__.py'
2026-02-10T05:38:47,974   adding 'torchref/restraints/builders.py'
2026-02-10T05:38:47,980   adding 'torchref/restraints/builders_fast.py'
2026-02-10T05:38:47,984   adding 'torchref/restraints/builders_numba.py'
2026-02-10T05:38:47,996   adding 'torchref/restraints/restraints.py'
2026-02-10T05:38:48,000   adding 'torchref/restraints/restraints_helper.py'
2026-02-10T05:38:48,006   adding 'torchref/restraints/restraints_new.py'
2026-02-10T05:38:48,009   adding 'torchref/scaling/__init__.py'
2026-02-10T05:38:48,010   adding 'torchref/scaling/scaler.py'
2026-02-10T05:38:48,014   adding 'torchref/scaling/scaler_base.py'
2026-02-10T05:38:48,017   adding 'torchref/scaling/solvent_new.py'
2026-02-10T05:38:48,019   adding 'torchref/symmetry/__init__.py'
2026-02-10T05:38:48,021   adding 'torchref/symmetry/cell.py'
2026-02-10T05:38:48,023   adding 'torchref/symmetry/grid_utils.py'
2026-02-10T05:38:48,025   adding 'torchref/symmetry/map_symmetry.py'
2026-02-10T05:38:48,027   adding 'torchref/symmetry/map_symmetry_interpolation.py'
2026-02-10T05:38:48,033   adding 'torchref/symmetry/reciprocal_symmetry.py'
2026-02-10T05:38:48,036   adding 'torchref/symmetry/spacegroup.py'
2026-02-10T05:38:48,037   adding 'torchref/symmetry/symmetry.py'
2026-02-10T05:38:48,039   adding 'torchref/utils/__init__.py'
2026-02-10T05:38:48,041   adding 'torchref/utils/debug_utils.py'
2026-02-10T05:38:48,042   adding 'torchref/utils/gradnorm.py'
2026-02-10T05:38:48,044   adding 'torchref/utils/hyperparameters.py'
2026-02-10T05:38:48,046   adding 'torchref/utils/pse.py'
2026-02-10T05:38:48,047   adding 'torchref/utils/stats.py'
2026-02-10T05:38:48,052   adding 'torchref/utils/utils.py'
2026-02-10T05:38:48,055   adding 'torchref-0.3.1.dist-info/licenses/LICENSE'
2026-02-10T05:38:48,056   adding 'torchref-0.3.1.dist-info/METADATA'
2026-02-10T05:38:48,057   adding 'torchref-0.3.1.dist-info/WHEEL'
2026-02-10T05:38:48,058   adding 'torchref-0.3.1.dist-info/entry_points.txt'
2026-02-10T05:38:48,059   adding 'torchref-0.3.1.dist-info/top_level.txt'
2026-02-10T05:38:48,061   adding 'torchref-0.3.1.dist-info/RECORD'
2026-02-10T05:38:48,069   removing build/bdist.linux-armv7l/wheel
2026-02-10T05:38:48,199   Building wheel for torchref (pyproject.toml): finished with status 'done'
2026-02-10T05:38:48,212   Created wheel for torchref: filename=torchref-0.3.1-py3-none-any.whl size=472722 sha256=25deb48a634dda8c799c2d7c32d9749bf327e976900dbd2a5fedf435ee5e921f
2026-02-10T05:38:48,213   Stored in directory: /tmp/pip-ephem-wheel-cache-_mki1un2/wheels/3a/4b/cc/0c75da8ae524e2e86bafc2ac29a403b4e389d4e7a214b8dedf
2026-02-10T05:38:48,228 Successfully built torchref
2026-02-10T05:38:48,246 Removed build tracker: '/tmp/pip-build-tracker-pmverxpn'