2026-02-10T05:55:08,666 Created temporary directory: /tmp/pip-ephem-wheel-cache-zjr442cn
2026-02-10T05:55:08,668 Created temporary directory: /tmp/pip-build-tracker-_x605wnb
2026-02-10T05:55:08,668 Initialized build tracking at /tmp/pip-build-tracker-_x605wnb
2026-02-10T05:55:08,669 Created build tracker: /tmp/pip-build-tracker-_x605wnb
2026-02-10T05:55:08,669 Entered build tracker: /tmp/pip-build-tracker-_x605wnb
2026-02-10T05:55:08,670 Created temporary directory: /tmp/pip-wheel-rvqyg35r
2026-02-10T05:55:08,673 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-02-10T05:55:08,676 Created temporary directory: /tmp/pip-ephem-wheel-cache-src64j3i
2026-02-10T05:55:08,701 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-02-10T05:55:08,704 2 location(s) to search for versions of torchref:
2026-02-10T05:55:08,704 * https://pypi.org/simple/torchref/
2026-02-10T05:55:08,704 * https://www.piwheels.org/simple/torchref/
2026-02-10T05:55:08,705 Fetching project page and analyzing links: https://pypi.org/simple/torchref/
2026-02-10T05:55:08,706 Getting page https://pypi.org/simple/torchref/
2026-02-10T05:55:08,708 Found index url https://pypi.org/simple
2026-02-10T05:55:08,925 Fetched page https://pypi.org/simple/torchref/ as application/vnd.pypi.simple.v1+json
2026-02-10T05:55:08,927   Skipping link: No binaries permitted for torchref: https://files.pythonhosted.org/packages/64/ac/2604e364cc5df69ccdc7f3c9f0cdccaf9c51e96c4d622e64b508ed42d102/torchref-0.3.0-py3-none-any.whl (from https://pypi.org/simple/torchref/) (requires-python:>=3.9)
2026-02-10T05:55:08,928   Found link https://files.pythonhosted.org/packages/73/7f/9c1e4112b5dd16c6712d7a8542a20f84bfd290f42c79dbcc4124a4df4ec9/torchref-0.3.0.tar.gz (from https://pypi.org/simple/torchref/) (requires-python:>=3.9), version: 0.3.0
2026-02-10T05:55:08,929   Skipping link: No binaries permitted for torchref: https://files.pythonhosted.org/packages/2c/60/fa60e785ed08bc2e5a786869b7143e31881874cf9e87a83b7602322bb6e5/torchref-0.3.1-py3-none-any.whl (from https://pypi.org/simple/torchref/) (requires-python:>=3.9)
2026-02-10T05:55:08,930   Found link https://files.pythonhosted.org/packages/70/0e/584b23bda864347754d7b0c9fcced9ee05dc5f7d3424d8cfd74717b6bb2f/torchref-0.3.1.tar.gz (from https://pypi.org/simple/torchref/) (requires-python:>=3.9), version: 0.3.1
2026-02-10T05:55:08,930   Skipping link: No binaries permitted for torchref: https://files.pythonhosted.org/packages/e8/b3/f063b38c335c7b0c625fd7306e6b594e5ff453ab41b33317decaa6feadc3/torchref-0.3.2-py3-none-any.whl (from https://pypi.org/simple/torchref/) (requires-python:>=3.9)
2026-02-10T05:55:08,931   Found link https://files.pythonhosted.org/packages/da/78/277f71170bd394e88380562379e2fe3b292acd3eb6d95ce110671da4ef59/torchref-0.3.2.tar.gz (from https://pypi.org/simple/torchref/) (requires-python:>=3.9), version: 0.3.2
2026-02-10T05:55:08,932 Fetching project page and analyzing links: https://www.piwheels.org/simple/torchref/
2026-02-10T05:55:08,933 Getting page https://www.piwheels.org/simple/torchref/
2026-02-10T05:55:08,934 Found index url https://www.piwheels.org/simple
2026-02-10T05:55:09,092 Fetched page https://www.piwheels.org/simple/torchref/ as text/html
2026-02-10T05:55:09,094   Skipping link: No binaries permitted for torchref: https://www.piwheels.org/simple/torchref/torchref-0.3.1-py3-none-any.whl#sha256=25deb48a634dda8c799c2d7c32d9749bf327e976900dbd2a5fedf435ee5e921f (from https://www.piwheels.org/simple/torchref/) (requires-python:>=3.9)
2026-02-10T05:55:09,095   Skipping link: No binaries permitted for torchref: https://www.piwheels.org/simple/torchref/torchref-0.3.0-py3-none-any.whl#sha256=3032f506e2c816e7e7638e151ed6e70bf0f6b0213e92f8f790dce96c53c0d65f (from https://www.piwheels.org/simple/torchref/) (requires-python:>=3.9)
2026-02-10T05:55:09,095 Skipping link: not a file: https://www.piwheels.org/simple/torchref/
2026-02-10T05:55:09,096 Skipping link: not a file: https://pypi.org/simple/torchref/
2026-02-10T05:55:09,115 Given no hashes to check 1 links for project 'torchref': discarding no candidates
2026-02-10T05:55:09,133 Collecting torchref==0.3.2
2026-02-10T05:55:09,135   Created temporary directory: /tmp/pip-unpack-bxd3qm7t
2026-02-10T05:55:09,272   Downloading torchref-0.3.2.tar.gz (508 kB)
2026-02-10T05:55:09,694   Added torchref==0.3.2 from https://files.pythonhosted.org/packages/da/78/277f71170bd394e88380562379e2fe3b292acd3eb6d95ce110671da4ef59/torchref-0.3.2.tar.gz to build tracker '/tmp/pip-build-tracker-_x605wnb'
2026-02-10T05:55:09,700   Created temporary directory: /tmp/pip-build-env-hy87p3iw
2026-02-10T05:55:09,705   Installing build dependencies: started
2026-02-10T05:55:09,706   Running command pip subprocess to install build dependencies
2026-02-10T05:55:10,885   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-02-10T05:55:11,500   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-02-10T05:55:11,522   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-02-10T05:55:13,317   Collecting setuptools>=42
2026-02-10T05:55:13,336     Using cached setuptools-82.0.0-py3-none-any.whl (1.0 MB)
2026-02-10T05:55:13,628   Collecting wheel
2026-02-10T05:55:13,643     Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB)
2026-02-10T05:55:13,823   Collecting packaging>=24.0
2026-02-10T05:55:13,840     Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB)
2026-02-10T05:55:17,090   Installing collected packages: setuptools, packaging, wheel
2026-02-10T05:55:20,436     Creating /tmp/pip-build-env-hy87p3iw/overlay/local/bin
2026-02-10T05:55:20,438     changing mode of /tmp/pip-build-env-hy87p3iw/overlay/local/bin/wheel to 755
2026-02-10T05:55:20,458   Successfully installed packaging-26.0 setuptools-82.0.0 wheel-0.46.3
2026-02-10T05:55:20,732   Installing build dependencies: finished with status 'done'
2026-02-10T05:55:20,738   Getting requirements to build wheel: started
2026-02-10T05:55:20,739   Running command Getting requirements to build wheel
2026-02-10T05:55:21,428   running egg_info
2026-02-10T05:55:21,434   writing torchref.egg-info/PKG-INFO
2026-02-10T05:55:21,440   writing dependency_links to torchref.egg-info/dependency_links.txt
2026-02-10T05:55:21,442   writing entry points to torchref.egg-info/entry_points.txt
2026-02-10T05:55:21,446   writing requirements to torchref.egg-info/requires.txt
2026-02-10T05:55:21,447   writing top-level names to torchref.egg-info/top_level.txt
2026-02-10T05:55:21,494   reading manifest file 'torchref.egg-info/SOURCES.txt'
2026-02-10T05:55:21,502   adding license file 'LICENSE'
2026-02-10T05:55:21,509   writing manifest file 'torchref.egg-info/SOURCES.txt'
2026-02-10T05:55:21,606   Getting requirements to build wheel: finished with status 'done'
2026-02-10T05:55:21,609   Created temporary directory: /tmp/pip-modern-metadata-ga_n8tjx
2026-02-10T05:55:21,612   Preparing metadata (pyproject.toml): started
2026-02-10T05:55:21,613   Running command Preparing metadata (pyproject.toml)
2026-02-10T05:55:22,263   running dist_info
2026-02-10T05:55:22,273   creating /tmp/pip-modern-metadata-ga_n8tjx/torchref.egg-info
2026-02-10T05:55:22,274   writing /tmp/pip-modern-metadata-ga_n8tjx/torchref.egg-info/PKG-INFO
2026-02-10T05:55:22,280   writing dependency_links to /tmp/pip-modern-metadata-ga_n8tjx/torchref.egg-info/dependency_links.txt
2026-02-10T05:55:22,282   writing entry points to /tmp/pip-modern-metadata-ga_n8tjx/torchref.egg-info/entry_points.txt
2026-02-10T05:55:22,286   writing requirements to /tmp/pip-modern-metadata-ga_n8tjx/torchref.egg-info/requires.txt
2026-02-10T05:55:22,287   writing top-level names to /tmp/pip-modern-metadata-ga_n8tjx/torchref.egg-info/top_level.txt
2026-02-10T05:55:22,288   writing manifest file '/tmp/pip-modern-metadata-ga_n8tjx/torchref.egg-info/SOURCES.txt'
2026-02-10T05:55:22,327   reading manifest file '/tmp/pip-modern-metadata-ga_n8tjx/torchref.egg-info/SOURCES.txt'
2026-02-10T05:55:22,329   adding license file 'LICENSE'
2026-02-10T05:55:22,335   writing manifest file '/tmp/pip-modern-metadata-ga_n8tjx/torchref.egg-info/SOURCES.txt'
2026-02-10T05:55:22,336   creating '/tmp/pip-modern-metadata-ga_n8tjx/torchref-0.3.2.dist-info'
2026-02-10T05:55:22,458   Preparing metadata (pyproject.toml): finished with status 'done'
2026-02-10T05:55:22,463   Source in /tmp/pip-wheel-rvqyg35r/torchref_ea1bedf193b64434a5a99199e986dd90 has version 0.3.2, which satisfies requirement torchref==0.3.2 from https://files.pythonhosted.org/packages/da/78/277f71170bd394e88380562379e2fe3b292acd3eb6d95ce110671da4ef59/torchref-0.3.2.tar.gz
2026-02-10T05:55:22,464   Removed torchref==0.3.2 from https://files.pythonhosted.org/packages/da/78/277f71170bd394e88380562379e2fe3b292acd3eb6d95ce110671da4ef59/torchref-0.3.2.tar.gz from build tracker '/tmp/pip-build-tracker-_x605wnb'
2026-02-10T05:55:22,469 Created temporary directory: /tmp/pip-unpack-zp5z7tzn
2026-02-10T05:55:22,470 Building wheels for collected packages: torchref
2026-02-10T05:55:22,474   Created temporary directory: /tmp/pip-wheel-g4ok3vxc
2026-02-10T05:55:22,475   Destination directory: /tmp/pip-wheel-g4ok3vxc
2026-02-10T05:55:22,477   Building wheel for torchref (pyproject.toml): started
2026-02-10T05:55:22,478   Running command Building wheel for torchref (pyproject.toml)
2026-02-10T05:55:23,102   running bdist_wheel
2026-02-10T05:55:23,119   running build
2026-02-10T05:55:23,120   running build_py
2026-02-10T05:55:23,126   creating build/lib/torchref
2026-02-10T05:55:23,128   copying torchref/config.py -> build/lib/torchref
2026-02-10T05:55:23,130   copying torchref/_bootstrap.py -> build/lib/torchref
2026-02-10T05:55:23,132   copying torchref/__init__.py -> build/lib/torchref
2026-02-10T05:55:23,134   creating build/lib/torchref/restraints
2026-02-10T05:55:23,135   copying torchref/restraints/restraints.py -> build/lib/torchref/restraints
2026-02-10T05:55:23,142   copying torchref/restraints/builders_numba.py -> build/lib/torchref/restraints
2026-02-10T05:55:23,145   copying torchref/restraints/builders_fast.py -> build/lib/torchref/restraints
2026-02-10T05:55:23,149   copying torchref/restraints/restraints_new.py -> build/lib/torchref/restraints
2026-02-10T05:55:23,153   copying torchref/restraints/restraints_helper.py -> build/lib/torchref/restraints
2026-02-10T05:55:23,155   copying torchref/restraints/builders.py -> build/lib/torchref/restraints
2026-02-10T05:55:23,159   copying torchref/restraints/__init__.py -> build/lib/torchref/restraints
2026-02-10T05:55:23,162   creating build/lib/torchref/alignment
2026-02-10T05:55:23,163   copying torchref/alignment/distributions.py -> build/lib/torchref/alignment
2026-02-10T05:55:23,165   copying torchref/alignment/ball_transform.py -> build/lib/torchref/alignment
2026-02-10T05:55:23,169   copying torchref/alignment/clashscore.py -> build/lib/torchref/alignment
2026-02-10T05:55:23,171   copying torchref/alignment/translation.py -> build/lib/torchref/alignment
2026-02-10T05:55:23,174   copying torchref/alignment/transform.py -> build/lib/torchref/alignment
2026-02-10T05:55:23,176   copying torchref/alignment/jax_subpixel_peaks.py -> build/lib/torchref/alignment
2026-02-10T05:55:23,178   copying torchref/alignment/sampling.py -> build/lib/torchref/alignment
2026-02-10T05:55:23,181   copying torchref/alignment/pipeline.py -> build/lib/torchref/alignment
2026-02-10T05:55:23,183   copying torchref/alignment/rigid_body.py -> build/lib/torchref/alignment
2026-02-10T05:55:23,186   copying torchref/alignment/__init__.py -> build/lib/torchref/alignment
2026-02-10T05:55:23,189   creating build/lib/torchref/io
2026-02-10T05:55:23,189   copying torchref/io/cif_readers.py -> build/lib/torchref/io
2026-02-10T05:55:23,193   copying torchref/io/pdb.py -> build/lib/torchref/io
2026-02-10T05:55:23,195   copying torchref/io/data_router.py -> build/lib/torchref/io
2026-02-10T05:55:23,197   copying torchref/io/mtz.py -> build/lib/torchref/io
2026-02-10T05:55:23,200   copying torchref/io/cif.py -> build/lib/torchref/io
2026-02-10T05:55:23,202   copying torchref/io/__init__.py -> build/lib/torchref/io
2026-02-10T05:55:23,204   creating build/lib/torchref/model
2026-02-10T05:55:23,205   copying torchref/model/simple_model.py -> build/lib/torchref/model
2026-02-10T05:55:23,208   copying torchref/model/fft.py -> build/lib/torchref/model
2026-02-10T05:55:23,210   copying torchref/model/model.py -> build/lib/torchref/model
2026-02-10T05:55:23,214   copying torchref/model/parameter_wrappers.py -> build/lib/torchref/model
2026-02-10T05:55:23,218   copying torchref/model/model_ft.py -> build/lib/torchref/model
2026-02-10T05:55:23,221   copying torchref/model/__init__.py -> build/lib/torchref/model
2026-02-10T05:55:23,223   creating build/lib/torchref/scaling
2026-02-10T05:55:23,224   copying torchref/scaling/scaler.py -> build/lib/torchref/scaling
2026-02-10T05:55:23,226   copying torchref/scaling/solvent_new.py -> build/lib/torchref/scaling
2026-02-10T05:55:23,229   copying torchref/scaling/scaler_base.py -> build/lib/torchref/scaling
2026-02-10T05:55:23,232   copying torchref/scaling/__init__.py -> build/lib/torchref/scaling
2026-02-10T05:55:23,234   creating build/lib/torchref/base
2026-02-10T05:55:23,235   copying torchref/base/get_scattering_factor_torch.py -> build/lib/torchref/base
2026-02-10T05:55:23,237   copying torchref/base/math_torch.py -> build/lib/torchref/base
2026-02-10T05:55:23,240   copying torchref/base/math_numpy.py -> build/lib/torchref/base
2026-02-10T05:55:23,242   copying torchref/base/french_wilson.py -> build/lib/torchref/base
2026-02-10T05:55:23,245   copying torchref/base/__init__.py -> build/lib/torchref/base
2026-02-10T05:55:23,248   copying torchref/base/CCTBX_related.py -> build/lib/torchref/base
2026-02-10T05:55:23,250   creating build/lib/torchref/cli
2026-02-10T05:55:23,251   copying torchref/cli/refine_everything_random_weights.py -> build/lib/torchref/cli
2026-02-10T05:55:23,253   copying torchref/cli/refine_everything_policy.py -> build/lib/torchref/cli
2026-02-10T05:55:23,256   copying torchref/cli/refine_screened.py -> build/lib/torchref/cli
2026-02-10T05:55:23,258   copying torchref/cli/refine_everything.py -> build/lib/torchref/cli
2026-02-10T05:55:23,260   copying torchref/cli/refine_everything_hyperparameters.py -> build/lib/torchref/cli
2026-02-10T05:55:23,263   copying torchref/cli/refine.py -> build/lib/torchref/cli
2026-02-10T05:55:23,266   copying torchref/cli/refine_everything_static.py -> build/lib/torchref/cli
2026-02-10T05:55:23,268   copying torchref/cli/__init__.py -> build/lib/torchref/cli
2026-02-10T05:55:23,270   creating build/lib/torchref/symmetry
2026-02-10T05:55:23,271   copying torchref/symmetry/reciprocal_symmetry.py -> build/lib/torchref/symmetry
2026-02-10T05:55:23,274   copying torchref/symmetry/grid_utils.py -> build/lib/torchref/symmetry
2026-02-10T05:55:23,276   copying torchref/symmetry/map_symmetry_interpolation.py -> build/lib/torchref/symmetry
2026-02-10T05:55:23,279   copying torchref/symmetry/spacegroup.py -> build/lib/torchref/symmetry
2026-02-10T05:55:23,282   copying torchref/symmetry/cell.py -> build/lib/torchref/symmetry
2026-02-10T05:55:23,284   copying torchref/symmetry/symmetry.py -> build/lib/torchref/symmetry
2026-02-10T05:55:23,286   copying torchref/symmetry/__init__.py -> build/lib/torchref/symmetry
2026-02-10T05:55:23,288   copying torchref/symmetry/map_symmetry.py -> build/lib/torchref/symmetry
2026-02-10T05:55:23,291   creating build/lib/torchref/refinement
2026-02-10T05:55:23,292   copying torchref/refinement/optimizers.py -> build/lib/torchref/refinement
2026-02-10T05:55:23,294   copying torchref/refinement/loss_state.py -> build/lib/torchref/refinement
2026-02-10T05:55:23,296   copying torchref/refinement/base_refinement.py -> build/lib/torchref/refinement
2026-02-10T05:55:23,299   copying torchref/refinement/lbfgs_refinement.py -> build/lib/torchref/refinement
2026-02-10T05:55:23,302   copying torchref/refinement/__init__.py -> build/lib/torchref/refinement
2026-02-10T05:55:23,304   creating build/lib/torchref/utils
2026-02-10T05:55:23,305   copying torchref/utils/debug_utils.py -> build/lib/torchref/utils
2026-02-10T05:55:23,307   copying torchref/utils/pse.py -> build/lib/torchref/utils
2026-02-10T05:55:23,310   copying torchref/utils/gradnorm.py -> build/lib/torchref/utils
2026-02-10T05:55:23,311   copying torchref/utils/stats.py -> build/lib/torchref/utils
2026-02-10T05:55:23,313   copying torchref/utils/utils.py -> build/lib/torchref/utils
2026-02-10T05:55:23,316   copying torchref/utils/hyperparameters.py -> build/lib/torchref/utils
2026-02-10T05:55:23,318   copying torchref/utils/__init__.py -> build/lib/torchref/utils
2026-02-10T05:55:23,321   creating build/lib/torchref/io/datasets
2026-02-10T05:55:23,322   copying torchref/io/datasets/reflection_data.py -> build/lib/torchref/io/datasets
2026-02-10T05:55:23,327   copying torchref/io/datasets/collection.py -> build/lib/torchref/io/datasets
2026-02-10T05:55:23,329   copying torchref/io/datasets/__init__.py -> build/lib/torchref/io/datasets
2026-02-10T05:55:23,330   copying torchref/io/datasets/base.py -> build/lib/torchref/io/datasets
2026-02-10T05:55:23,333   creating build/lib/torchref/base/kernels
2026-02-10T05:55:23,334   copying torchref/base/kernels/optimized_ops.py -> build/lib/torchref/base/kernels
2026-02-10T05:55:23,337   copying torchref/base/kernels/__init__.py -> build/lib/torchref/base/kernels
2026-02-10T05:55:23,338   copying torchref/base/kernels/jit_kernel_vectorized_add_to_map.py -> build/lib/torchref/base/kernels
2026-02-10T05:55:23,341   creating build/lib/torchref/base/alignment
2026-02-10T05:55:23,342   copying torchref/base/alignment/rotation.py -> build/lib/torchref/base/alignment
2026-02-10T05:55:23,345   copying torchref/base/alignment/__init__.py -> build/lib/torchref/base/alignment
2026-02-10T05:55:23,347   copying torchref/base/alignment/scoring.py -> build/lib/torchref/base/alignment
2026-02-10T05:55:23,349   copying torchref/base/alignment/superposition.py -> build/lib/torchref/base/alignment
2026-02-10T05:55:23,352   copying torchref/base/alignment/normalization.py -> build/lib/torchref/base/alignment
2026-02-10T05:55:23,355   creating build/lib/torchref/base/reciprocal
2026-02-10T05:55:23,356   copying torchref/base/reciprocal/basis.py -> build/lib/torchref/base/reciprocal
2026-02-10T05:55:23,358   copying torchref/base/reciprocal/interpolation.py -> build/lib/torchref/base/reciprocal
2026-02-10T05:55:23,361   copying torchref/base/reciprocal/grid_operations.py -> build/lib/torchref/base/reciprocal
2026-02-10T05:55:23,363   copying torchref/base/reciprocal/symmetry.py -> build/lib/torchref/base/reciprocal
2026-02-10T05:55:23,366   copying torchref/base/reciprocal/hkl.py -> build/lib/torchref/base/reciprocal
2026-02-10T05:55:23,368   copying torchref/base/reciprocal/__init__.py -> build/lib/torchref/base/reciprocal
2026-02-10T05:55:23,370   creating build/lib/torchref/base/electron_density
2026-02-10T05:55:23,371   copying torchref/base/electron_density/solvent_mask.py -> build/lib/torchref/base/electron_density
2026-02-10T05:55:23,373   copying torchref/base/electron_density/map_building.py -> build/lib/torchref/base/electron_density
2026-02-10T05:55:23,376   copying torchref/base/electron_density/voxel_utils.py -> build/lib/torchref/base/electron_density
2026-02-10T05:55:23,378   copying torchref/base/electron_density/__init__.py -> build/lib/torchref/base/electron_density
2026-02-10T05:55:23,380   creating build/lib/torchref/base/metrics
2026-02-10T05:55:23,381   copying torchref/base/metrics/loss.py -> build/lib/torchref/base/metrics
2026-02-10T05:55:23,384   copying torchref/base/metrics/rfactor.py -> build/lib/torchref/base/metrics
2026-02-10T05:55:23,386   copying torchref/base/metrics/__init__.py -> build/lib/torchref/base/metrics
2026-02-10T05:55:23,388   creating build/lib/torchref/base/fourier
2026-02-10T05:55:23,389   copying torchref/base/fourier/fft.py -> build/lib/torchref/base/fourier
2026-02-10T05:55:23,390   copying torchref/base/fourier/grid.py -> build/lib/torchref/base/fourier
2026-02-10T05:55:23,393   copying torchref/base/fourier/__init__.py -> build/lib/torchref/base/fourier
2026-02-10T05:55:23,395   creating build/lib/torchref/base/structure_factors
2026-02-10T05:55:23,396   copying torchref/base/structure_factors/isotropic.py -> build/lib/torchref/base/structure_factors
2026-02-10T05:55:23,397   copying torchref/base/structure_factors/corrections.py -> build/lib/torchref/base/structure_factors
2026-02-10T05:55:23,399   copying torchref/base/structure_factors/__init__.py -> build/lib/torchref/base/structure_factors
2026-02-10T05:55:23,401   copying torchref/base/structure_factors/anisotropic.py -> build/lib/torchref/base/structure_factors
2026-02-10T05:55:23,403   creating build/lib/torchref/base/coordinates
2026-02-10T05:55:23,404   copying torchref/base/coordinates/transforms_torch.py -> build/lib/torchref/base/coordinates
2026-02-10T05:55:23,406   copying torchref/base/coordinates/periodic_boundary.py -> build/lib/torchref/base/coordinates
2026-02-10T05:55:23,408   copying torchref/base/coordinates/transforms_numpy.py -> build/lib/torchref/base/coordinates
2026-02-10T05:55:23,409   copying torchref/base/coordinates/__init__.py -> build/lib/torchref/base/coordinates
2026-02-10T05:55:23,411   creating build/lib/torchref/base/scattering
2026-02-10T05:55:23,412   copying torchref/base/scattering/itc92.py -> build/lib/torchref/base/scattering
2026-02-10T05:55:23,415   copying torchref/base/scattering/__init__.py -> build/lib/torchref/base/scattering
2026-02-10T05:55:23,417   creating build/lib/torchref/refinement/weighting
2026-02-10T05:55:23,418   copying torchref/refinement/weighting/component_weighting.py -> build/lib/torchref/refinement/weighting
2026-02-10T05:55:23,421   copying torchref/refinement/weighting/policy_weighting.py -> build/lib/torchref/refinement/weighting
2026-02-10T05:55:23,423   copying torchref/refinement/weighting/es_policy_training.py -> build/lib/torchref/refinement/weighting
2026-02-10T05:55:23,426   copying torchref/refinement/weighting/base_weighting.py -> build/lib/torchref/refinement/weighting
2026-02-10T05:55:23,428   copying torchref/refinement/weighting/random_weighting.py -> build/lib/torchref/refinement/weighting
2026-02-10T05:55:23,430   copying torchref/refinement/weighting/__init__.py -> build/lib/torchref/refinement/weighting
2026-02-10T05:55:23,432   creating build/lib/torchref/refinement/targets
2026-02-10T05:55:23,433   copying torchref/refinement/targets/targets.py -> build/lib/torchref/refinement/targets
2026-02-10T05:55:23,437   copying torchref/refinement/targets/combined_targets.py -> build/lib/torchref/refinement/targets
2026-02-10T05:55:23,440   copying torchref/refinement/targets/__init__.py -> build/lib/torchref/refinement/targets
2026-02-10T05:55:23,441   running egg_info
2026-02-10T05:55:23,451   writing torchref.egg-info/PKG-INFO
2026-02-10T05:55:23,456   writing dependency_links to torchref.egg-info/dependency_links.txt
2026-02-10T05:55:23,458   writing entry points to torchref.egg-info/entry_points.txt
2026-02-10T05:55:23,461   writing requirements to torchref.egg-info/requires.txt
2026-02-10T05:55:23,462   writing top-level names to torchref.egg-info/top_level.txt
2026-02-10T05:55:23,492   reading manifest file 'torchref.egg-info/SOURCES.txt'
2026-02-10T05:55:23,500   adding license file 'LICENSE'
2026-02-10T05:55:23,507   writing manifest file 'torchref.egg-info/SOURCES.txt'
2026-02-10T05:55:23,521   creating build/lib/torchref/data
2026-02-10T05:55:23,522   copying torchref/data/atomic_vdw_radii.csv -> build/lib/torchref/data
2026-02-10T05:55:23,524   copying torchref/data/default_hyperparameters.json -> build/lib/torchref/data
2026-02-10T05:55:23,526   copying torchref/data/policy_latest.pt -> build/lib/torchref/data
2026-02-10T05:55:23,552   installing to build/bdist.linux-armv7l/wheel
2026-02-10T05:55:23,553   running install
2026-02-10T05:55:23,576   running install_lib
2026-02-10T05:55:23,581   creating build/bdist.linux-armv7l/wheel
2026-02-10T05:55:23,583   creating build/bdist.linux-armv7l/wheel/torchref
2026-02-10T05:55:23,585   creating build/bdist.linux-armv7l/wheel/torchref/restraints
2026-02-10T05:55:23,586   copying build/lib/torchref/restraints/restraints.py -> build/bdist.linux-armv7l/wheel/./torchref/restraints
2026-02-10T05:55:23,590   copying build/lib/torchref/restraints/builders_numba.py -> build/bdist.linux-armv7l/wheel/./torchref/restraints
2026-02-10T05:55:23,593   copying build/lib/torchref/restraints/builders_fast.py -> build/bdist.linux-armv7l/wheel/./torchref/restraints
2026-02-10T05:55:23,598   copying build/lib/torchref/restraints/restraints_new.py -> build/bdist.linux-armv7l/wheel/./torchref/restraints
2026-02-10T05:55:23,602   copying build/lib/torchref/restraints/restraints_helper.py -> build/bdist.linux-armv7l/wheel/./torchref/restraints
2026-02-10T05:55:23,605   copying build/lib/torchref/restraints/builders.py -> build/bdist.linux-armv7l/wheel/./torchref/restraints
2026-02-10T05:55:23,609   copying build/lib/torchref/restraints/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/restraints
2026-02-10T05:55:23,611   copying build/lib/torchref/config.py -> build/bdist.linux-armv7l/wheel/./torchref
2026-02-10T05:55:23,614   creating build/bdist.linux-armv7l/wheel/torchref/data
2026-02-10T05:55:23,616   copying build/lib/torchref/data/atomic_vdw_radii.csv -> build/bdist.linux-armv7l/wheel/./torchref/data
2026-02-10T05:55:23,618   copying build/lib/torchref/data/policy_latest.pt -> build/bdist.linux-armv7l/wheel/./torchref/data
2026-02-10T05:55:23,624   copying build/lib/torchref/data/default_hyperparameters.json -> build/bdist.linux-armv7l/wheel/./torchref/data
2026-02-10T05:55:23,626   creating build/bdist.linux-armv7l/wheel/torchref/alignment
2026-02-10T05:55:23,627   copying build/lib/torchref/alignment/distributions.py -> build/bdist.linux-armv7l/wheel/./torchref/alignment
2026-02-10T05:55:23,630   copying build/lib/torchref/alignment/ball_transform.py -> build/bdist.linux-armv7l/wheel/./torchref/alignment
2026-02-10T05:55:23,633   copying build/lib/torchref/alignment/clashscore.py -> build/bdist.linux-armv7l/wheel/./torchref/alignment
2026-02-10T05:55:23,635   copying build/lib/torchref/alignment/translation.py -> build/bdist.linux-armv7l/wheel/./torchref/alignment
2026-02-10T05:55:23,637   copying build/lib/torchref/alignment/transform.py -> build/bdist.linux-armv7l/wheel/./torchref/alignment
2026-02-10T05:55:23,640   copying build/lib/torchref/alignment/jax_subpixel_peaks.py -> build/bdist.linux-armv7l/wheel/./torchref/alignment
2026-02-10T05:55:23,642   copying build/lib/torchref/alignment/sampling.py -> build/bdist.linux-armv7l/wheel/./torchref/alignment
2026-02-10T05:55:23,644   copying build/lib/torchref/alignment/pipeline.py -> build/bdist.linux-armv7l/wheel/./torchref/alignment
2026-02-10T05:55:23,647   copying build/lib/torchref/alignment/rigid_body.py -> build/bdist.linux-armv7l/wheel/./torchref/alignment
2026-02-10T05:55:23,649   copying build/lib/torchref/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/alignment
2026-02-10T05:55:23,652   creating build/bdist.linux-armv7l/wheel/torchref/io
2026-02-10T05:55:23,653   creating build/bdist.linux-armv7l/wheel/torchref/io/datasets
2026-02-10T05:55:23,655   copying build/lib/torchref/io/datasets/reflection_data.py -> build/bdist.linux-armv7l/wheel/./torchref/io/datasets
2026-02-10T05:55:23,659   copying build/lib/torchref/io/datasets/collection.py -> build/bdist.linux-armv7l/wheel/./torchref/io/datasets
2026-02-10T05:55:23,661   copying build/lib/torchref/io/datasets/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/io/datasets
2026-02-10T05:55:23,663   copying build/lib/torchref/io/datasets/base.py -> build/bdist.linux-armv7l/wheel/./torchref/io/datasets
2026-02-10T05:55:23,666   copying build/lib/torchref/io/cif_readers.py -> build/bdist.linux-armv7l/wheel/./torchref/io
2026-02-10T05:55:23,669   copying build/lib/torchref/io/pdb.py -> build/bdist.linux-armv7l/wheel/./torchref/io
2026-02-10T05:55:23,671   copying build/lib/torchref/io/data_router.py -> build/bdist.linux-armv7l/wheel/./torchref/io
2026-02-10T05:55:23,673   copying build/lib/torchref/io/mtz.py -> build/bdist.linux-armv7l/wheel/./torchref/io
2026-02-10T05:55:23,676   copying build/lib/torchref/io/cif.py -> build/bdist.linux-armv7l/wheel/./torchref/io
2026-02-10T05:55:23,678   copying build/lib/torchref/io/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/io
2026-02-10T05:55:23,680   creating build/bdist.linux-armv7l/wheel/torchref/model
2026-02-10T05:55:23,681   copying build/lib/torchref/model/simple_model.py -> build/bdist.linux-armv7l/wheel/./torchref/model
2026-02-10T05:55:23,683   copying build/lib/torchref/model/fft.py -> build/bdist.linux-armv7l/wheel/./torchref/model
2026-02-10T05:55:23,686   copying build/lib/torchref/model/model.py -> build/bdist.linux-armv7l/wheel/./torchref/model
2026-02-10T05:55:23,689   copying build/lib/torchref/model/parameter_wrappers.py -> build/bdist.linux-armv7l/wheel/./torchref/model
2026-02-10T05:55:23,693   copying build/lib/torchref/model/model_ft.py -> build/bdist.linux-armv7l/wheel/./torchref/model
2026-02-10T05:55:23,696   copying build/lib/torchref/model/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/model
2026-02-10T05:55:23,698   creating build/bdist.linux-armv7l/wheel/torchref/scaling
2026-02-10T05:55:23,699   copying build/lib/torchref/scaling/scaler.py -> build/bdist.linux-armv7l/wheel/./torchref/scaling
2026-02-10T05:55:23,702   copying build/lib/torchref/scaling/solvent_new.py -> build/bdist.linux-armv7l/wheel/./torchref/scaling
2026-02-10T05:55:23,704   copying build/lib/torchref/scaling/scaler_base.py -> build/bdist.linux-armv7l/wheel/./torchref/scaling
2026-02-10T05:55:23,707   copying build/lib/torchref/scaling/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/scaling
2026-02-10T05:55:23,709   copying build/lib/torchref/_bootstrap.py -> build/bdist.linux-armv7l/wheel/./torchref
2026-02-10T05:55:23,711   creating build/bdist.linux-armv7l/wheel/torchref/base
2026-02-10T05:55:23,712   copying build/lib/torchref/base/get_scattering_factor_torch.py -> build/bdist.linux-armv7l/wheel/./torchref/base
2026-02-10T05:55:23,715   creating build/bdist.linux-armv7l/wheel/torchref/base/kernels
2026-02-10T05:55:23,716   copying build/lib/torchref/base/kernels/optimized_ops.py -> build/bdist.linux-armv7l/wheel/./torchref/base/kernels
2026-02-10T05:55:23,718   copying build/lib/torchref/base/kernels/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base/kernels
2026-02-10T05:55:23,720   copying build/lib/torchref/base/kernels/jit_kernel_vectorized_add_to_map.py -> build/bdist.linux-armv7l/wheel/./torchref/base/kernels
2026-02-10T05:55:23,723   creating build/bdist.linux-armv7l/wheel/torchref/base/alignment
2026-02-10T05:55:23,724   copying build/lib/torchref/base/alignment/rotation.py -> build/bdist.linux-armv7l/wheel/./torchref/base/alignment
2026-02-10T05:55:23,727   copying build/lib/torchref/base/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base/alignment
2026-02-10T05:55:23,729   copying build/lib/torchref/base/alignment/scoring.py -> build/bdist.linux-armv7l/wheel/./torchref/base/alignment
2026-02-10T05:55:23,731   copying build/lib/torchref/base/alignment/superposition.py -> build/bdist.linux-armv7l/wheel/./torchref/base/alignment
2026-02-10T05:55:23,733   copying build/lib/torchref/base/alignment/normalization.py -> build/bdist.linux-armv7l/wheel/./torchref/base/alignment
2026-02-10T05:55:23,735   copying build/lib/torchref/base/math_torch.py -> build/bdist.linux-armv7l/wheel/./torchref/base
2026-02-10T05:55:23,738   copying build/lib/torchref/base/math_numpy.py -> build/bdist.linux-armv7l/wheel/./torchref/base
2026-02-10T05:55:23,741   creating build/bdist.linux-armv7l/wheel/torchref/base/reciprocal
2026-02-10T05:55:23,742   copying build/lib/torchref/base/reciprocal/basis.py -> build/bdist.linux-armv7l/wheel/./torchref/base/reciprocal
2026-02-10T05:55:23,745   copying build/lib/torchref/base/reciprocal/interpolation.py -> build/bdist.linux-armv7l/wheel/./torchref/base/reciprocal
2026-02-10T05:55:23,747   copying build/lib/torchref/base/reciprocal/grid_operations.py -> build/bdist.linux-armv7l/wheel/./torchref/base/reciprocal
2026-02-10T05:55:23,749   copying build/lib/torchref/base/reciprocal/symmetry.py -> build/bdist.linux-armv7l/wheel/./torchref/base/reciprocal
2026-02-10T05:55:23,751   copying build/lib/torchref/base/reciprocal/hkl.py -> build/bdist.linux-armv7l/wheel/./torchref/base/reciprocal
2026-02-10T05:55:23,753   copying build/lib/torchref/base/reciprocal/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base/reciprocal
2026-02-10T05:55:23,756   creating build/bdist.linux-armv7l/wheel/torchref/base/electron_density
2026-02-10T05:55:23,756   copying build/lib/torchref/base/electron_density/solvent_mask.py -> build/bdist.linux-armv7l/wheel/./torchref/base/electron_density
2026-02-10T05:55:23,759   copying build/lib/torchref/base/electron_density/map_building.py -> build/bdist.linux-armv7l/wheel/./torchref/base/electron_density
2026-02-10T05:55:23,761   copying build/lib/torchref/base/electron_density/voxel_utils.py -> build/bdist.linux-armv7l/wheel/./torchref/base/electron_density
2026-02-10T05:55:23,763   copying build/lib/torchref/base/electron_density/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base/electron_density
2026-02-10T05:55:23,765   copying build/lib/torchref/base/french_wilson.py -> build/bdist.linux-armv7l/wheel/./torchref/base
2026-02-10T05:55:23,768   creating build/bdist.linux-armv7l/wheel/torchref/base/metrics
2026-02-10T05:55:23,769   copying build/lib/torchref/base/metrics/loss.py -> build/bdist.linux-armv7l/wheel/./torchref/base/metrics
2026-02-10T05:55:23,772   copying build/lib/torchref/base/metrics/rfactor.py -> build/bdist.linux-armv7l/wheel/./torchref/base/metrics
2026-02-10T05:55:23,774   copying build/lib/torchref/base/metrics/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base/metrics
2026-02-10T05:55:23,777   creating build/bdist.linux-armv7l/wheel/torchref/base/fourier
2026-02-10T05:55:23,778   copying build/lib/torchref/base/fourier/fft.py -> build/bdist.linux-armv7l/wheel/./torchref/base/fourier
2026-02-10T05:55:23,780   copying build/lib/torchref/base/fourier/grid.py -> build/bdist.linux-armv7l/wheel/./torchref/base/fourier
2026-02-10T05:55:23,782   copying build/lib/torchref/base/fourier/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base/fourier
2026-02-10T05:55:23,785   creating build/bdist.linux-armv7l/wheel/torchref/base/structure_factors
2026-02-10T05:55:23,786   copying build/lib/torchref/base/structure_factors/isotropic.py -> build/bdist.linux-armv7l/wheel/./torchref/base/structure_factors
2026-02-10T05:55:23,788   copying build/lib/torchref/base/structure_factors/corrections.py -> build/bdist.linux-armv7l/wheel/./torchref/base/structure_factors
2026-02-10T05:55:23,791   copying build/lib/torchref/base/structure_factors/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base/structure_factors
2026-02-10T05:55:23,793   copying build/lib/torchref/base/structure_factors/anisotropic.py -> build/bdist.linux-armv7l/wheel/./torchref/base/structure_factors
2026-02-10T05:55:23,795   creating build/bdist.linux-armv7l/wheel/torchref/base/coordinates
2026-02-10T05:55:23,796   copying build/lib/torchref/base/coordinates/transforms_torch.py -> build/bdist.linux-armv7l/wheel/./torchref/base/coordinates
2026-02-10T05:55:23,799   copying build/lib/torchref/base/coordinates/periodic_boundary.py -> build/bdist.linux-armv7l/wheel/./torchref/base/coordinates
2026-02-10T05:55:23,801   copying build/lib/torchref/base/coordinates/transforms_numpy.py -> build/bdist.linux-armv7l/wheel/./torchref/base/coordinates
2026-02-10T05:55:23,803   copying build/lib/torchref/base/coordinates/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base/coordinates
2026-02-10T05:55:23,806   copying build/lib/torchref/base/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base
2026-02-10T05:55:23,809   creating build/bdist.linux-armv7l/wheel/torchref/base/scattering
2026-02-10T05:55:23,810   copying build/lib/torchref/base/scattering/itc92.py -> build/bdist.linux-armv7l/wheel/./torchref/base/scattering
2026-02-10T05:55:23,812   copying build/lib/torchref/base/scattering/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/base/scattering
2026-02-10T05:55:23,813   copying build/lib/torchref/base/CCTBX_related.py -> build/bdist.linux-armv7l/wheel/./torchref/base
2026-02-10T05:55:23,816   creating build/bdist.linux-armv7l/wheel/torchref/cli
2026-02-10T05:55:23,817   copying build/lib/torchref/cli/refine_everything_random_weights.py -> build/bdist.linux-armv7l/wheel/./torchref/cli
2026-02-10T05:55:23,819   copying build/lib/torchref/cli/refine_everything_policy.py -> build/bdist.linux-armv7l/wheel/./torchref/cli
2026-02-10T05:55:23,822   copying build/lib/torchref/cli/refine_screened.py -> build/bdist.linux-armv7l/wheel/./torchref/cli
2026-02-10T05:55:23,825   copying build/lib/torchref/cli/refine_everything.py -> build/bdist.linux-armv7l/wheel/./torchref/cli
2026-02-10T05:55:23,828   copying build/lib/torchref/cli/refine_everything_hyperparameters.py -> build/bdist.linux-armv7l/wheel/./torchref/cli
2026-02-10T05:55:23,830   copying build/lib/torchref/cli/refine.py -> build/bdist.linux-armv7l/wheel/./torchref/cli
2026-02-10T05:55:23,833   copying build/lib/torchref/cli/refine_everything_static.py -> build/bdist.linux-armv7l/wheel/./torchref/cli
2026-02-10T05:55:23,836   copying build/lib/torchref/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/cli
2026-02-10T05:55:23,838   creating build/bdist.linux-armv7l/wheel/torchref/symmetry
2026-02-10T05:55:23,840   copying build/lib/torchref/symmetry/reciprocal_symmetry.py -> build/bdist.linux-armv7l/wheel/./torchref/symmetry
2026-02-10T05:55:23,843   copying build/lib/torchref/symmetry/grid_utils.py -> build/bdist.linux-armv7l/wheel/./torchref/symmetry
2026-02-10T05:55:23,846   copying build/lib/torchref/symmetry/map_symmetry_interpolation.py -> build/bdist.linux-armv7l/wheel/./torchref/symmetry
2026-02-10T05:55:23,849   copying build/lib/torchref/symmetry/spacegroup.py -> build/bdist.linux-armv7l/wheel/./torchref/symmetry
2026-02-10T05:55:23,852   copying build/lib/torchref/symmetry/cell.py -> build/bdist.linux-armv7l/wheel/./torchref/symmetry
2026-02-10T05:55:23,854   copying build/lib/torchref/symmetry/symmetry.py -> build/bdist.linux-armv7l/wheel/./torchref/symmetry
2026-02-10T05:55:23,857   copying build/lib/torchref/symmetry/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/symmetry
2026-02-10T05:55:23,859   copying build/lib/torchref/symmetry/map_symmetry.py -> build/bdist.linux-armv7l/wheel/./torchref/symmetry
2026-02-10T05:55:23,862   creating build/bdist.linux-armv7l/wheel/torchref/refinement
2026-02-10T05:55:23,864   copying build/lib/torchref/refinement/optimizers.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement
2026-02-10T05:55:23,866   copying build/lib/torchref/refinement/loss_state.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement
2026-02-10T05:55:23,870   creating build/bdist.linux-armv7l/wheel/torchref/refinement/weighting
2026-02-10T05:55:23,872   copying build/lib/torchref/refinement/weighting/component_weighting.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/weighting
2026-02-10T05:55:23,876   copying build/lib/torchref/refinement/weighting/policy_weighting.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/weighting
2026-02-10T05:55:23,880   copying build/lib/torchref/refinement/weighting/es_policy_training.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/weighting
2026-02-10T05:55:23,883   copying build/lib/torchref/refinement/weighting/base_weighting.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/weighting
2026-02-10T05:55:23,886   copying build/lib/torchref/refinement/weighting/random_weighting.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/weighting
2026-02-10T05:55:23,889   copying build/lib/torchref/refinement/weighting/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/weighting
2026-02-10T05:55:23,892   copying build/lib/torchref/refinement/base_refinement.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement
2026-02-10T05:55:23,897   copying build/lib/torchref/refinement/lbfgs_refinement.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement
2026-02-10T05:55:23,900   copying build/lib/torchref/refinement/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement
2026-02-10T05:55:23,903   creating build/bdist.linux-armv7l/wheel/torchref/refinement/targets
2026-02-10T05:55:23,905   copying build/lib/torchref/refinement/targets/targets.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets
2026-02-10T05:55:23,911   copying build/lib/torchref/refinement/targets/combined_targets.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets
2026-02-10T05:55:23,914   copying build/lib/torchref/refinement/targets/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/refinement/targets
2026-02-10T05:55:23,917   copying build/lib/torchref/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref
2026-02-10T05:55:23,920   creating build/bdist.linux-armv7l/wheel/torchref/utils
2026-02-10T05:55:23,922   copying build/lib/torchref/utils/debug_utils.py -> build/bdist.linux-armv7l/wheel/./torchref/utils
2026-02-10T05:55:23,925   copying build/lib/torchref/utils/pse.py -> build/bdist.linux-armv7l/wheel/./torchref/utils
2026-02-10T05:55:23,928   copying build/lib/torchref/utils/gradnorm.py -> build/bdist.linux-armv7l/wheel/./torchref/utils
2026-02-10T05:55:23,931   copying build/lib/torchref/utils/stats.py -> build/bdist.linux-armv7l/wheel/./torchref/utils
2026-02-10T05:55:23,934   copying build/lib/torchref/utils/utils.py -> build/bdist.linux-armv7l/wheel/./torchref/utils
2026-02-10T05:55:23,938   copying build/lib/torchref/utils/hyperparameters.py -> build/bdist.linux-armv7l/wheel/./torchref/utils
2026-02-10T05:55:23,941   copying build/lib/torchref/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./torchref/utils
2026-02-10T05:55:23,944   running install_egg_info
2026-02-10T05:55:23,951   Copying torchref.egg-info to build/bdist.linux-armv7l/wheel/./torchref-0.3.2-py3.11.egg-info
2026-02-10T05:55:23,966   running install_scripts
2026-02-10T05:55:23,978   creating build/bdist.linux-armv7l/wheel/torchref-0.3.2.dist-info/WHEEL
2026-02-10T05:55:23,981   creating '/tmp/pip-wheel-g4ok3vxc/.tmp-5794d6vs/torchref-0.3.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-02-10T05:55:23,984   adding 'torchref/__init__.py'
2026-02-10T05:55:23,985   adding 'torchref/_bootstrap.py'
2026-02-10T05:55:23,987   adding 'torchref/config.py'
2026-02-10T05:55:23,990   adding 'torchref/alignment/__init__.py'
2026-02-10T05:55:23,998   adding 'torchref/alignment/ball_transform.py'
2026-02-10T05:55:24,002   adding 'torchref/alignment/clashscore.py'
2026-02-10T05:55:24,005   adding 'torchref/alignment/distributions.py'
2026-02-10T05:55:24,007   adding 'torchref/alignment/jax_subpixel_peaks.py'
2026-02-10T05:55:24,010   adding 'torchref/alignment/pipeline.py'
2026-02-10T05:55:24,012   adding 'torchref/alignment/rigid_body.py'
2026-02-10T05:55:24,015   adding 'torchref/alignment/sampling.py'
2026-02-10T05:55:24,018   adding 'torchref/alignment/transform.py'
2026-02-10T05:55:24,021   adding 'torchref/alignment/translation.py'
2026-02-10T05:55:24,023   adding 'torchref/base/CCTBX_related.py'
2026-02-10T05:55:24,025   adding 'torchref/base/__init__.py'
2026-02-10T05:55:24,029   adding 'torchref/base/french_wilson.py'
2026-02-10T05:55:24,032   adding 'torchref/base/get_scattering_factor_torch.py'
2026-02-10T05:55:24,035   adding 'torchref/base/math_numpy.py'
2026-02-10T05:55:24,038   adding 'torchref/base/math_torch.py'
2026-02-10T05:55:24,040   adding 'torchref/base/alignment/__init__.py'
2026-02-10T05:55:24,042   adding 'torchref/base/alignment/normalization.py'
2026-02-10T05:55:24,045   adding 'torchref/base/alignment/rotation.py'
2026-02-10T05:55:24,046   adding 'torchref/base/alignment/scoring.py'
2026-02-10T05:55:24,048   adding 'torchref/base/alignment/superposition.py'
2026-02-10T05:55:24,050   adding 'torchref/base/coordinates/__init__.py'
2026-02-10T05:55:24,051   adding 'torchref/base/coordinates/periodic_boundary.py'
2026-02-10T05:55:24,052   adding 'torchref/base/coordinates/transforms_numpy.py'
2026-02-10T05:55:24,054   adding 'torchref/base/coordinates/transforms_torch.py'
2026-02-10T05:55:24,055   adding 'torchref/base/electron_density/__init__.py'
2026-02-10T05:55:24,057   adding 'torchref/base/electron_density/map_building.py'
2026-02-10T05:55:24,059   adding 'torchref/base/electron_density/solvent_mask.py'
2026-02-10T05:55:24,061   adding 'torchref/base/electron_density/voxel_utils.py'
2026-02-10T05:55:24,062   adding 'torchref/base/fourier/__init__.py'
2026-02-10T05:55:24,064   adding 'torchref/base/fourier/fft.py'
2026-02-10T05:55:24,066   adding 'torchref/base/fourier/grid.py'
2026-02-10T05:55:24,068   adding 'torchref/base/kernels/__init__.py'
2026-02-10T05:55:24,071   adding 'torchref/base/kernels/jit_kernel_vectorized_add_to_map.py'
2026-02-10T05:55:24,073   adding 'torchref/base/kernels/optimized_ops.py'
2026-02-10T05:55:24,075   adding 'torchref/base/metrics/__init__.py'
2026-02-10T05:55:24,077   adding 'torchref/base/metrics/loss.py'
2026-02-10T05:55:24,078   adding 'torchref/base/metrics/rfactor.py'
2026-02-10T05:55:24,080   adding 'torchref/base/reciprocal/__init__.py'
2026-02-10T05:55:24,081   adding 'torchref/base/reciprocal/basis.py'
2026-02-10T05:55:24,083   adding 'torchref/base/reciprocal/grid_operations.py'
2026-02-10T05:55:24,084   adding 'torchref/base/reciprocal/hkl.py'
2026-02-10T05:55:24,087   adding 'torchref/base/reciprocal/interpolation.py'
2026-02-10T05:55:24,089   adding 'torchref/base/reciprocal/symmetry.py'
2026-02-10T05:55:24,090   adding 'torchref/base/scattering/__init__.py'
2026-02-10T05:55:24,092   adding 'torchref/base/scattering/itc92.py'
2026-02-10T05:55:24,094   adding 'torchref/base/structure_factors/__init__.py'
2026-02-10T05:55:24,095   adding 'torchref/base/structure_factors/anisotropic.py'
2026-02-10T05:55:24,096   adding 'torchref/base/structure_factors/corrections.py'
2026-02-10T05:55:24,098   adding 'torchref/base/structure_factors/isotropic.py'
2026-02-10T05:55:24,099   adding 'torchref/cli/__init__.py'
2026-02-10T05:55:24,101   adding 'torchref/cli/refine.py'
2026-02-10T05:55:24,103   adding 'torchref/cli/refine_everything.py'
2026-02-10T05:55:24,105   adding 'torchref/cli/refine_everything_hyperparameters.py'
2026-02-10T05:55:24,108   adding 'torchref/cli/refine_everything_policy.py'
2026-02-10T05:55:24,110   adding 'torchref/cli/refine_everything_random_weights.py'
2026-02-10T05:55:24,111   adding 'torchref/cli/refine_everything_static.py'
2026-02-10T05:55:24,113   adding 'torchref/cli/refine_screened.py'
2026-02-10T05:55:24,116   adding 'torchref/data/atomic_vdw_radii.csv'
2026-02-10T05:55:24,117   adding 'torchref/data/default_hyperparameters.json'
2026-02-10T05:55:24,155   adding 'torchref/data/policy_latest.pt'
2026-02-10T05:55:24,158   adding 'torchref/io/__init__.py'
2026-02-10T05:55:24,160   adding 'torchref/io/cif.py'
2026-02-10T05:55:24,167   adding 'torchref/io/cif_readers.py'
2026-02-10T05:55:24,169   adding 'torchref/io/data_router.py'
2026-02-10T05:55:24,172   adding 'torchref/io/mtz.py'
2026-02-10T05:55:24,174   adding 'torchref/io/pdb.py'
2026-02-10T05:55:24,175   adding 'torchref/io/datasets/__init__.py'
2026-02-10T05:55:24,177   adding 'torchref/io/datasets/base.py'
2026-02-10T05:55:24,179   adding 'torchref/io/datasets/collection.py'
2026-02-10T05:55:24,190   adding 'torchref/io/datasets/reflection_data.py'
2026-02-10T05:55:24,193   adding 'torchref/model/__init__.py'
2026-02-10T05:55:24,195   adding 'torchref/model/fft.py'
2026-02-10T05:55:24,204   adding 'torchref/model/model.py'
2026-02-10T05:55:24,208   adding 'torchref/model/model_ft.py'
2026-02-10T05:55:24,216   adding 'torchref/model/parameter_wrappers.py'
2026-02-10T05:55:24,219   adding 'torchref/model/simple_model.py'
2026-02-10T05:55:24,221   adding 'torchref/refinement/__init__.py'
2026-02-10T05:55:24,225   adding 'torchref/refinement/base_refinement.py'
2026-02-10T05:55:24,228   adding 'torchref/refinement/lbfgs_refinement.py'
2026-02-10T05:55:24,230   adding 'torchref/refinement/loss_state.py'
2026-02-10T05:55:24,232   adding 'torchref/refinement/optimizers.py'
2026-02-10T05:55:24,233   adding 'torchref/refinement/targets/__init__.py'
2026-02-10T05:55:24,235   adding 'torchref/refinement/targets/combined_targets.py'
2026-02-10T05:55:24,243   adding 'torchref/refinement/targets/targets.py'
2026-02-10T05:55:24,245   adding 'torchref/refinement/weighting/__init__.py'
2026-02-10T05:55:24,246   adding 'torchref/refinement/weighting/base_weighting.py'
2026-02-10T05:55:24,248   adding 'torchref/refinement/weighting/component_weighting.py'
2026-02-10T05:55:24,251   adding 'torchref/refinement/weighting/es_policy_training.py'
2026-02-10T05:55:24,254   adding 'torchref/refinement/weighting/policy_weighting.py'
2026-02-10T05:55:24,256   adding 'torchref/refinement/weighting/random_weighting.py'
2026-02-10T05:55:24,258   adding 'torchref/restraints/__init__.py'
2026-02-10T05:55:24,263   adding 'torchref/restraints/builders.py'
2026-02-10T05:55:24,269   adding 'torchref/restraints/builders_fast.py'
2026-02-10T05:55:24,273   adding 'torchref/restraints/builders_numba.py'
2026-02-10T05:55:24,285   adding 'torchref/restraints/restraints.py'
2026-02-10T05:55:24,289   adding 'torchref/restraints/restraints_helper.py'
2026-02-10T05:55:24,295   adding 'torchref/restraints/restraints_new.py'
2026-02-10T05:55:24,298   adding 'torchref/scaling/__init__.py'
2026-02-10T05:55:24,300   adding 'torchref/scaling/scaler.py'
2026-02-10T05:55:24,304   adding 'torchref/scaling/scaler_base.py'
2026-02-10T05:55:24,307   adding 'torchref/scaling/solvent_new.py'
2026-02-10T05:55:24,309   adding 'torchref/symmetry/__init__.py'
2026-02-10T05:55:24,311   adding 'torchref/symmetry/cell.py'
2026-02-10T05:55:24,312   adding 'torchref/symmetry/grid_utils.py'
2026-02-10T05:55:24,315   adding 'torchref/symmetry/map_symmetry.py'
2026-02-10T05:55:24,317   adding 'torchref/symmetry/map_symmetry_interpolation.py'
2026-02-10T05:55:24,322   adding 'torchref/symmetry/reciprocal_symmetry.py'
2026-02-10T05:55:24,325   adding 'torchref/symmetry/spacegroup.py'
2026-02-10T05:55:24,327   adding 'torchref/symmetry/symmetry.py'
2026-02-10T05:55:24,329   adding 'torchref/utils/__init__.py'
2026-02-10T05:55:24,331   adding 'torchref/utils/debug_utils.py'
2026-02-10T05:55:24,332   adding 'torchref/utils/gradnorm.py'
2026-02-10T05:55:24,334   adding 'torchref/utils/hyperparameters.py'
2026-02-10T05:55:24,335   adding 'torchref/utils/pse.py'
2026-02-10T05:55:24,337   adding 'torchref/utils/stats.py'
2026-02-10T05:55:24,342   adding 'torchref/utils/utils.py'
2026-02-10T05:55:24,345   adding 'torchref-0.3.2.dist-info/licenses/LICENSE'
2026-02-10T05:55:24,347   adding 'torchref-0.3.2.dist-info/METADATA'
2026-02-10T05:55:24,348   adding 'torchref-0.3.2.dist-info/WHEEL'
2026-02-10T05:55:24,349   adding 'torchref-0.3.2.dist-info/entry_points.txt'
2026-02-10T05:55:24,350   adding 'torchref-0.3.2.dist-info/top_level.txt'
2026-02-10T05:55:24,352   adding 'torchref-0.3.2.dist-info/RECORD'
2026-02-10T05:55:24,361   removing build/bdist.linux-armv7l/wheel
2026-02-10T05:55:24,495   Building wheel for torchref (pyproject.toml): finished with status 'done'
2026-02-10T05:55:24,516   Created wheel for torchref: filename=torchref-0.3.2-py3-none-any.whl size=581027 sha256=30e0c5727c1872459a9dcff4416e224ff7486dea2f43a6c20dab66a307492093
2026-02-10T05:55:24,518   Stored in directory: /tmp/pip-ephem-wheel-cache-src64j3i/wheels/bf/79/c9/04aeff7b3ca4aacf0840d1911b3b2046c3bc96fdde3d5ed6fc
2026-02-10T05:55:24,532 Successfully built torchref
2026-02-10T05:55:24,559 Removed build tracker: '/tmp/pip-build-tracker-_x605wnb'