2026-02-10T07:38:55,590 Created temporary directory: /tmp/pip-ephem-wheel-cache-pu7myn7v 2026-02-10T07:38:55,592 Created temporary directory: /tmp/pip-build-tracker-fxb7ph6e 2026-02-10T07:38:55,592 Initialized build tracking at /tmp/pip-build-tracker-fxb7ph6e 2026-02-10T07:38:55,593 Created build tracker: /tmp/pip-build-tracker-fxb7ph6e 2026-02-10T07:38:55,593 Entered build tracker: /tmp/pip-build-tracker-fxb7ph6e 2026-02-10T07:38:55,594 Created temporary directory: /tmp/pip-wheel-0a8e1_8f 2026-02-10T07:38:55,597 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-02-10T07:38:55,599 Created temporary directory: /tmp/pip-ephem-wheel-cache-mq_d7lbj 2026-02-10T07:38:55,624 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-02-10T07:38:55,628 2 location(s) to search for versions of scipion-em-cryocare: 2026-02-10T07:38:55,628 * https://pypi.org/simple/scipion-em-cryocare/ 2026-02-10T07:38:55,628 * https://www.piwheels.org/simple/scipion-em-cryocare/ 2026-02-10T07:38:55,628 Fetching project page and analyzing links: https://pypi.org/simple/scipion-em-cryocare/ 2026-02-10T07:38:55,629 Getting page https://pypi.org/simple/scipion-em-cryocare/ 2026-02-10T07:38:55,630 Found index url https://pypi.org/simple 2026-02-10T07:38:55,849 Fetched page https://pypi.org/simple/scipion-em-cryocare/ as application/vnd.pypi.simple.v1+json 2026-02-10T07:38:55,853 Found link https://files.pythonhosted.org/packages/78/ff/e0f412797a951c7e5fd21e3d7a164df2d63616ff316960f79ad4f14710d4/scipion-em-cryocare-3.0.0a1.tar.gz (from https://pypi.org/simple/scipion-em-cryocare/), version: 3.0.0a1 2026-02-10T07:38:55,854 Skipping link: No binaries permitted for scipion-em-cryocare: https://files.pythonhosted.org/packages/15/95/15b05879e1af4ec76a54d39abfb01d14488343e4a3a6705591d1350588f0/scipion_em_cryocare-3.0.0a1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-cryocare/) 2026-02-10T07:38:55,854 Found link https://files.pythonhosted.org/packages/7f/4b/7174918195d54df1c4d00b73ca84b8431c8c4711037ef7b212ec532959e5/scipion-em-cryocare-3.0.1.tar.gz (from https://pypi.org/simple/scipion-em-cryocare/), version: 3.0.1 2026-02-10T07:38:55,855 Skipping link: No binaries permitted for scipion-em-cryocare: https://files.pythonhosted.org/packages/fc/88/7e04ce34a6648c72d1201d41543241c69e4550c0c3310faa61ac15fa3ef9/scipion_em_cryocare-3.0.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-cryocare/) 2026-02-10T07:38:55,856 Found link https://files.pythonhosted.org/packages/19/5b/3b44a96da9de2f4b65d942597f43fe34e4ef90a74127334a55a662704b46/scipion-em-cryocare-3.1.1.tar.gz (from https://pypi.org/simple/scipion-em-cryocare/), version: 3.1.1 2026-02-10T07:38:55,857 Found link https://files.pythonhosted.org/packages/f3/4e/d4027f635108af6425298aed8789121a8d80895421edf630cdb90401af8b/scipion-em-cryocare-3.2.0.tar.gz (from https://pypi.org/simple/scipion-em-cryocare/), version: 3.2.0 2026-02-10T07:38:55,857 Found link https://files.pythonhosted.org/packages/26/93/01aa806a00c0707559d89b026435440fe0b525d55feb39caf9936689fea7/scipion-em-cryocare-3.2.1.tar.gz (from https://pypi.org/simple/scipion-em-cryocare/), version: 3.2.1 2026-02-10T07:38:55,858 Found link https://files.pythonhosted.org/packages/05/9c/29f473dd87aa599cc2dcd1be6bf01ca94734a242209d7c4ee20e49a89b56/scipion-em-cryocare-4.0.0.tar.gz (from https://pypi.org/simple/scipion-em-cryocare/), version: 4.0.0 2026-02-10T07:38:55,859 Found link https://files.pythonhosted.org/packages/ac/dd/e95c7dd79b63685ba85d8deb3ea0d41a53b65f79b939a0dfea97f38a4d12/scipion-em-cryocare-4.1.0.tar.gz (from https://pypi.org/simple/scipion-em-cryocare/), version: 4.1.0 2026-02-10T07:38:55,860 Skipping link: No binaries permitted for scipion-em-cryocare: https://files.pythonhosted.org/packages/3b/b7/6c0411e56c7d3ad8fa30ee34640b2558fb974f1579d8d5c182bc7339e95c/scipion_em_cryocare-4.2.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-cryocare/) (requires-python:>=3.8) 2026-02-10T07:38:55,861 Found link https://files.pythonhosted.org/packages/59/fd/9a23ea21f27feccb7a92239ecce1c27ea8bb784d6988240b7757e5d65035/scipion_em_cryocare-4.2.0.tar.gz (from https://pypi.org/simple/scipion-em-cryocare/) (requires-python:>=3.8), version: 4.2.0 2026-02-10T07:38:55,862 Skipping link: No binaries permitted for scipion-em-cryocare: https://files.pythonhosted.org/packages/d2/34/e589874007281144d83ce3f6d7ca9c4497890b3bebd3a9b793e519b7645c/scipion_em_cryocare-4.2.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-cryocare/) (requires-python:>=3.8) 2026-02-10T07:38:55,863 Found link https://files.pythonhosted.org/packages/f3/44/3a65f1d6a34138f9c6f4f724f100164eae909f3da0059b777f7e93dcf6c1/scipion_em_cryocare-4.2.1.tar.gz (from https://pypi.org/simple/scipion-em-cryocare/) (requires-python:>=3.8), version: 4.2.1 2026-02-10T07:38:55,863 Skipping link: No binaries permitted for scipion-em-cryocare: https://files.pythonhosted.org/packages/38/98/6f23e2beb63876240c6f8df1ad0e13ed8ac675eba7708a31cf5807a61503/scipion_em_cryocare-4.2.2-py3-none-any.whl (from https://pypi.org/simple/scipion-em-cryocare/) (requires-python:>=3.8) 2026-02-10T07:38:55,864 Found link https://files.pythonhosted.org/packages/00/4e/e7c70b3bc2356ddb9d7781cbc09a34623e4ee4a4453dc3d94d74fd9fba65/scipion_em_cryocare-4.2.2.tar.gz (from https://pypi.org/simple/scipion-em-cryocare/) (requires-python:>=3.8), version: 4.2.2 2026-02-10T07:38:55,865 Skipping link: No binaries permitted for scipion-em-cryocare: https://files.pythonhosted.org/packages/1f/bb/73057d80b26f3c9d7d546c7f521197358eec9831aaf50eeeef0c856c91db/scipion_em_cryocare-4.2.4-py3-none-any.whl (from https://pypi.org/simple/scipion-em-cryocare/) (requires-python:>=3.8) 2026-02-10T07:38:55,866 Found link https://files.pythonhosted.org/packages/ee/0b/2a7f69fc497c986a06eab68a957e5e761f82c5cf5ec921fd0289d91152d4/scipion_em_cryocare-4.2.4.tar.gz (from https://pypi.org/simple/scipion-em-cryocare/) (requires-python:>=3.8), version: 4.2.4 2026-02-10T07:38:55,866 Fetching project page and analyzing links: https://www.piwheels.org/simple/scipion-em-cryocare/ 2026-02-10T07:38:55,867 Getting page https://www.piwheels.org/simple/scipion-em-cryocare/ 2026-02-10T07:38:55,869 Found index url https://www.piwheels.org/simple 2026-02-10T07:38:56,031 Fetched page https://www.piwheels.org/simple/scipion-em-cryocare/ as text/html 2026-02-10T07:38:56,034 Skipping link: No binaries permitted for scipion-em-cryocare: https://archive1.piwheels.org/simple/scipion-em-cryocare/scipion_em_cryocare-4.2.2-py3-none-any.whl#sha256=472e61957ad8db6e0496f7bf1146a0afcca2a0eb34794b7291dd07fb8153f2d3 (from https://www.piwheels.org/simple/scipion-em-cryocare/) (requires-python:>=3.8) 2026-02-10T07:38:56,035 Skipping link: No binaries permitted for scipion-em-cryocare: https://archive1.piwheels.org/simple/scipion-em-cryocare/scipion_em_cryocare-4.2.1-py3-none-any.whl#sha256=d4be32e831e4408faa6310a57fdbbdc94423f9e47ac39efad3d51e46d707662f (from https://www.piwheels.org/simple/scipion-em-cryocare/) (requires-python:>=3.8) 2026-02-10T07:38:56,035 Skipping link: No binaries permitted for scipion-em-cryocare: https://archive1.piwheels.org/simple/scipion-em-cryocare/scipion_em_cryocare-4.2.0-py3-none-any.whl#sha256=104b7f7cbed2cca277ada17c3b9885dbb71f384cdef84870c6fe8baf8d511410 (from https://www.piwheels.org/simple/scipion-em-cryocare/) (requires-python:>=3.8) 2026-02-10T07:38:56,036 Skipping link: No binaries permitted for scipion-em-cryocare: https://archive1.piwheels.org/simple/scipion-em-cryocare/scipion_em_cryocare-3.0.1-py3-none-any.whl#sha256=83bc58b9a3a12d71313b109be125bdb9333f8f08cf822616ae740164982e954c (from https://www.piwheels.org/simple/scipion-em-cryocare/) 2026-02-10T07:38:56,037 Skipping link: No binaries permitted for scipion-em-cryocare: https://archive1.piwheels.org/simple/scipion-em-cryocare/scipion_em_cryocare-3.0.0a1-py3-none-any.whl#sha256=def91e15fa23cdca6c050a879d3a775779a3420f38be89070ac29d41296067e5 (from https://www.piwheels.org/simple/scipion-em-cryocare/) 2026-02-10T07:38:56,037 Skipping link: not a file: https://www.piwheels.org/simple/scipion-em-cryocare/ 2026-02-10T07:38:56,038 Skipping link: not a file: https://pypi.org/simple/scipion-em-cryocare/ 2026-02-10T07:38:56,058 Given no hashes to check 1 links for project 'scipion-em-cryocare': discarding no candidates 2026-02-10T07:38:56,076 Collecting scipion-em-cryocare==4.2.4 2026-02-10T07:38:56,078 Created temporary directory: /tmp/pip-unpack-p57cnfxy 2026-02-10T07:38:56,213 Downloading scipion_em_cryocare-4.2.4.tar.gz (58 kB) 2026-02-10T07:38:56,317 Added scipion-em-cryocare==4.2.4 from https://files.pythonhosted.org/packages/ee/0b/2a7f69fc497c986a06eab68a957e5e761f82c5cf5ec921fd0289d91152d4/scipion_em_cryocare-4.2.4.tar.gz to build tracker '/tmp/pip-build-tracker-fxb7ph6e' 2026-02-10T07:38:56,321 Created temporary directory: /tmp/pip-build-env-lxzqg9fb 2026-02-10T07:38:56,326 Installing build dependencies: started 2026-02-10T07:38:56,328 Running command pip subprocess to install build dependencies 2026-02-10T07:38:57,459 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-02-10T07:38:58,092 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-02-10T07:38:58,115 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-02-10T07:38:59,860 Collecting setuptools 2026-02-10T07:38:59,879 Using cached setuptools-82.0.0-py3-none-any.whl (1.0 MB) 2026-02-10T07:39:00,145 Collecting wheel 2026-02-10T07:39:00,159 Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB) 2026-02-10T07:39:00,345 Collecting packaging>=24.0 2026-02-10T07:39:00,360 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-02-10T07:39:03,380 Installing collected packages: setuptools, packaging, wheel 2026-02-10T07:39:06,734 Creating /tmp/pip-build-env-lxzqg9fb/overlay/local/bin 2026-02-10T07:39:06,736 changing mode of /tmp/pip-build-env-lxzqg9fb/overlay/local/bin/wheel to 755 2026-02-10T07:39:06,756 Successfully installed packaging-26.0 setuptools-82.0.0 wheel-0.46.3 2026-02-10T07:39:07,031 Installing build dependencies: finished with status 'done' 2026-02-10T07:39:07,037 Getting requirements to build wheel: started 2026-02-10T07:39:07,039 Running command Getting requirements to build wheel 2026-02-10T07:39:07,634 No `packages` or `py_modules` configuration, performing automatic discovery. 2026-02-10T07:39:07,634 `flat-layout` detected -- analysing . 2026-02-10T07:39:07,650 discovered packages -- ['cryocare', 'cryocare.tests', 'cryocare.protocols'] 2026-02-10T07:39:07,656 /tmp/pip-build-env-lxzqg9fb/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-02-10T07:39:07,656 !! 2026-02-10T07:39:07,658 ******************************************************************************** 2026-02-10T07:39:07,658 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-02-10T07:39:07,659 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-02-10T07:39:07,660 or your builds will no longer be supported. 2026-02-10T07:39:07,662 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-10T07:39:07,662 ******************************************************************************** 2026-02-10T07:39:07,664 !! 2026-02-10T07:39:07,664 corresp(dist, value, root_dir) 2026-02-10T07:39:07,736 /tmp/pip-build-env-lxzqg9fb/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-02-10T07:39:07,737 !! 2026-02-10T07:39:07,738 ******************************************************************************** 2026-02-10T07:39:07,738 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-02-10T07:39:07,740 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-02-10T07:39:07,741 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-10T07:39:07,741 ******************************************************************************** 2026-02-10T07:39:07,742 !! 2026-02-10T07:39:07,743 dist._finalize_license_expression() 2026-02-10T07:39:07,743 /tmp/pip-build-env-lxzqg9fb/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-02-10T07:39:07,744 !! 2026-02-10T07:39:07,745 ******************************************************************************** 2026-02-10T07:39:07,745 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-02-10T07:39:07,746 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-02-10T07:39:07,748 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-10T07:39:07,748 ******************************************************************************** 2026-02-10T07:39:07,749 !! 2026-02-10T07:39:07,750 self._finalize_license_expression() 2026-02-10T07:39:07,751 running egg_info 2026-02-10T07:39:07,752 writing scipion_em_cryocare.egg-info/PKG-INFO 2026-02-10T07:39:07,755 writing dependency_links to scipion_em_cryocare.egg-info/dependency_links.txt 2026-02-10T07:39:07,757 writing entry points to scipion_em_cryocare.egg-info/entry_points.txt 2026-02-10T07:39:07,759 writing requirements to scipion_em_cryocare.egg-info/requires.txt 2026-02-10T07:39:07,760 writing top-level names to scipion_em_cryocare.egg-info/top_level.txt 2026-02-10T07:39:07,781 reading manifest file 'scipion_em_cryocare.egg-info/SOURCES.txt' 2026-02-10T07:39:07,784 reading manifest template 'MANIFEST.in' 2026-02-10T07:39:07,786 adding license file 'LICENSE' 2026-02-10T07:39:07,789 writing manifest file 'scipion_em_cryocare.egg-info/SOURCES.txt' 2026-02-10T07:39:07,886 Getting requirements to build wheel: finished with status 'done' 2026-02-10T07:39:07,889 Created temporary directory: /tmp/pip-modern-metadata-p1rzf8gh 2026-02-10T07:39:07,892 Preparing metadata (pyproject.toml): started 2026-02-10T07:39:07,893 Running command Preparing metadata (pyproject.toml) 2026-02-10T07:39:08,443 No `packages` or `py_modules` configuration, performing automatic discovery. 2026-02-10T07:39:08,443 `flat-layout` detected -- analysing . 2026-02-10T07:39:08,458 discovered packages -- ['cryocare', 'cryocare.tests', 'cryocare.protocols'] 2026-02-10T07:39:08,463 /tmp/pip-build-env-lxzqg9fb/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-02-10T07:39:08,464 !! 2026-02-10T07:39:08,465 ******************************************************************************** 2026-02-10T07:39:08,466 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-02-10T07:39:08,467 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-02-10T07:39:08,468 or your builds will no longer be supported. 2026-02-10T07:39:08,469 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-10T07:39:08,469 ******************************************************************************** 2026-02-10T07:39:08,470 !! 2026-02-10T07:39:08,471 corresp(dist, value, root_dir) 2026-02-10T07:39:08,540 /tmp/pip-build-env-lxzqg9fb/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-02-10T07:39:08,541 !! 2026-02-10T07:39:08,542 ******************************************************************************** 2026-02-10T07:39:08,543 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-02-10T07:39:08,544 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-02-10T07:39:08,545 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-10T07:39:08,545 ******************************************************************************** 2026-02-10T07:39:08,546 !! 2026-02-10T07:39:08,547 dist._finalize_license_expression() 2026-02-10T07:39:08,547 /tmp/pip-build-env-lxzqg9fb/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-02-10T07:39:08,548 !! 2026-02-10T07:39:08,549 ******************************************************************************** 2026-02-10T07:39:08,549 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-02-10T07:39:08,550 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-02-10T07:39:08,552 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-10T07:39:08,552 ******************************************************************************** 2026-02-10T07:39:08,553 !! 2026-02-10T07:39:08,554 self._finalize_license_expression() 2026-02-10T07:39:08,555 running dist_info 2026-02-10T07:39:08,563 creating /tmp/pip-modern-metadata-p1rzf8gh/scipion_em_cryocare.egg-info 2026-02-10T07:39:08,564 writing /tmp/pip-modern-metadata-p1rzf8gh/scipion_em_cryocare.egg-info/PKG-INFO 2026-02-10T07:39:08,567 writing dependency_links to /tmp/pip-modern-metadata-p1rzf8gh/scipion_em_cryocare.egg-info/dependency_links.txt 2026-02-10T07:39:08,569 writing entry points to /tmp/pip-modern-metadata-p1rzf8gh/scipion_em_cryocare.egg-info/entry_points.txt 2026-02-10T07:39:08,570 writing requirements to /tmp/pip-modern-metadata-p1rzf8gh/scipion_em_cryocare.egg-info/requires.txt 2026-02-10T07:39:08,572 writing top-level names to /tmp/pip-modern-metadata-p1rzf8gh/scipion_em_cryocare.egg-info/top_level.txt 2026-02-10T07:39:08,573 writing manifest file '/tmp/pip-modern-metadata-p1rzf8gh/scipion_em_cryocare.egg-info/SOURCES.txt' 2026-02-10T07:39:08,592 reading manifest file '/tmp/pip-modern-metadata-p1rzf8gh/scipion_em_cryocare.egg-info/SOURCES.txt' 2026-02-10T07:39:08,594 reading manifest template 'MANIFEST.in' 2026-02-10T07:39:08,596 adding license file 'LICENSE' 2026-02-10T07:39:08,599 writing manifest file '/tmp/pip-modern-metadata-p1rzf8gh/scipion_em_cryocare.egg-info/SOURCES.txt' 2026-02-10T07:39:08,600 creating '/tmp/pip-modern-metadata-p1rzf8gh/scipion_em_cryocare-4.2.4.dist-info' 2026-02-10T07:39:08,723 Preparing metadata (pyproject.toml): finished with status 'done' 2026-02-10T07:39:08,728 Source in /tmp/pip-wheel-0a8e1_8f/scipion-em-cryocare_48df539d588149d1b813c2b41c44fcaf has version 4.2.4, which satisfies requirement scipion-em-cryocare==4.2.4 from https://files.pythonhosted.org/packages/ee/0b/2a7f69fc497c986a06eab68a957e5e761f82c5cf5ec921fd0289d91152d4/scipion_em_cryocare-4.2.4.tar.gz 2026-02-10T07:39:08,729 Removed scipion-em-cryocare==4.2.4 from https://files.pythonhosted.org/packages/ee/0b/2a7f69fc497c986a06eab68a957e5e761f82c5cf5ec921fd0289d91152d4/scipion_em_cryocare-4.2.4.tar.gz from build tracker '/tmp/pip-build-tracker-fxb7ph6e' 2026-02-10T07:39:08,735 Created temporary directory: /tmp/pip-unpack-vawz6jv2 2026-02-10T07:39:08,735 Building wheels for collected packages: scipion-em-cryocare 2026-02-10T07:39:08,740 Created temporary directory: /tmp/pip-wheel-oewueddu 2026-02-10T07:39:08,740 Destination directory: /tmp/pip-wheel-oewueddu 2026-02-10T07:39:08,743 Building wheel for scipion-em-cryocare (pyproject.toml): started 2026-02-10T07:39:08,744 Running command Building wheel for scipion-em-cryocare (pyproject.toml) 2026-02-10T07:39:09,290 No `packages` or `py_modules` configuration, performing automatic discovery. 2026-02-10T07:39:09,290 `flat-layout` detected -- analysing . 2026-02-10T07:39:09,305 discovered packages -- ['cryocare', 'cryocare.tests', 'cryocare.protocols'] 2026-02-10T07:39:09,310 /tmp/pip-build-env-lxzqg9fb/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-02-10T07:39:09,311 !! 2026-02-10T07:39:09,312 ******************************************************************************** 2026-02-10T07:39:09,312 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-02-10T07:39:09,313 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-02-10T07:39:09,314 or your builds will no longer be supported. 2026-02-10T07:39:09,314 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-10T07:39:09,315 ******************************************************************************** 2026-02-10T07:39:09,316 !! 2026-02-10T07:39:09,317 corresp(dist, value, root_dir) 2026-02-10T07:39:09,378 /tmp/pip-build-env-lxzqg9fb/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-02-10T07:39:09,379 !! 2026-02-10T07:39:09,380 ******************************************************************************** 2026-02-10T07:39:09,380 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-02-10T07:39:09,382 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-02-10T07:39:09,383 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-10T07:39:09,383 ******************************************************************************** 2026-02-10T07:39:09,385 !! 2026-02-10T07:39:09,385 dist._finalize_license_expression() 2026-02-10T07:39:09,386 /tmp/pip-build-env-lxzqg9fb/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-02-10T07:39:09,386 !! 2026-02-10T07:39:09,388 ******************************************************************************** 2026-02-10T07:39:09,388 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-02-10T07:39:09,389 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-02-10T07:39:09,391 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-10T07:39:09,391 ******************************************************************************** 2026-02-10T07:39:09,392 !! 2026-02-10T07:39:09,393 self._finalize_license_expression() 2026-02-10T07:39:09,394 running bdist_wheel 2026-02-10T07:39:09,403 running build 2026-02-10T07:39:09,403 running build_py 2026-02-10T07:39:09,409 creating build/lib/cryocare 2026-02-10T07:39:09,411 copying cryocare/objects.py -> build/lib/cryocare 2026-02-10T07:39:09,414 copying cryocare/constants.py -> build/lib/cryocare 2026-02-10T07:39:09,416 copying cryocare/utils.py -> build/lib/cryocare 2026-02-10T07:39:09,417 copying cryocare/bibtex.py -> build/lib/cryocare 2026-02-10T07:39:09,419 copying cryocare/__init__.py -> build/lib/cryocare 2026-02-10T07:39:09,422 creating build/lib/cryocare/tests 2026-02-10T07:39:09,423 copying cryocare/tests/test_cryoCARE_workflow.py -> build/lib/cryocare/tests 2026-02-10T07:39:09,425 copying cryocare/tests/__init__.py -> build/lib/cryocare/tests 2026-02-10T07:39:09,428 creating build/lib/cryocare/protocols 2026-02-10T07:39:09,429 copying cryocare/protocols/protocol_predict.py -> build/lib/cryocare/protocols 2026-02-10T07:39:09,431 copying cryocare/protocols/protocol_load_model.py -> build/lib/cryocare/protocols 2026-02-10T07:39:09,433 copying cryocare/protocols/protocol_training.py -> build/lib/cryocare/protocols 2026-02-10T07:39:09,436 copying cryocare/protocols/__init__.py -> build/lib/cryocare/protocols 2026-02-10T07:39:09,438 copying cryocare/protocols/protocol_base.py -> build/lib/cryocare/protocols 2026-02-10T07:39:09,439 running egg_info 2026-02-10T07:39:09,449 writing scipion_em_cryocare.egg-info/PKG-INFO 2026-02-10T07:39:09,452 writing dependency_links to scipion_em_cryocare.egg-info/dependency_links.txt 2026-02-10T07:39:09,453 writing entry points to scipion_em_cryocare.egg-info/entry_points.txt 2026-02-10T07:39:09,455 writing requirements to scipion_em_cryocare.egg-info/requires.txt 2026-02-10T07:39:09,456 writing top-level names to scipion_em_cryocare.egg-info/top_level.txt 2026-02-10T07:39:09,467 reading manifest file 'scipion_em_cryocare.egg-info/SOURCES.txt' 2026-02-10T07:39:09,470 reading manifest template 'MANIFEST.in' 2026-02-10T07:39:09,472 adding license file 'LICENSE' 2026-02-10T07:39:09,475 writing manifest file 'scipion_em_cryocare.egg-info/SOURCES.txt' 2026-02-10T07:39:09,479 copying cryocare/icon.png -> build/lib/cryocare 2026-02-10T07:39:09,482 copying cryocare/protocols.conf -> build/lib/cryocare 2026-02-10T07:39:09,494 installing to build/bdist.linux-armv7l/wheel 2026-02-10T07:39:09,495 running install 2026-02-10T07:39:09,518 running install_lib 2026-02-10T07:39:09,523 creating build/bdist.linux-armv7l/wheel 2026-02-10T07:39:09,525 creating build/bdist.linux-armv7l/wheel/cryocare 2026-02-10T07:39:09,527 creating build/bdist.linux-armv7l/wheel/cryocare/tests 2026-02-10T07:39:09,528 copying build/lib/cryocare/tests/test_cryoCARE_workflow.py -> build/bdist.linux-armv7l/wheel/./cryocare/tests 2026-02-10T07:39:09,530 copying build/lib/cryocare/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./cryocare/tests 2026-02-10T07:39:09,532 copying build/lib/cryocare/objects.py -> build/bdist.linux-armv7l/wheel/./cryocare 2026-02-10T07:39:09,534 copying build/lib/cryocare/constants.py -> build/bdist.linux-armv7l/wheel/./cryocare 2026-02-10T07:39:09,536 creating build/bdist.linux-armv7l/wheel/cryocare/protocols 2026-02-10T07:39:09,537 copying build/lib/cryocare/protocols/protocol_predict.py -> build/bdist.linux-armv7l/wheel/./cryocare/protocols 2026-02-10T07:39:09,540 copying build/lib/cryocare/protocols/protocol_load_model.py -> build/bdist.linux-armv7l/wheel/./cryocare/protocols 2026-02-10T07:39:09,542 copying build/lib/cryocare/protocols/protocol_training.py -> build/bdist.linux-armv7l/wheel/./cryocare/protocols 2026-02-10T07:39:09,544 copying build/lib/cryocare/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/./cryocare/protocols 2026-02-10T07:39:09,546 copying build/lib/cryocare/protocols/protocol_base.py -> build/bdist.linux-armv7l/wheel/./cryocare/protocols 2026-02-10T07:39:09,548 copying build/lib/cryocare/icon.png -> build/bdist.linux-armv7l/wheel/./cryocare 2026-02-10T07:39:09,550 copying build/lib/cryocare/protocols.conf -> build/bdist.linux-armv7l/wheel/./cryocare 2026-02-10T07:39:09,552 copying build/lib/cryocare/utils.py -> build/bdist.linux-armv7l/wheel/./cryocare 2026-02-10T07:39:09,554 copying build/lib/cryocare/bibtex.py -> build/bdist.linux-armv7l/wheel/./cryocare 2026-02-10T07:39:09,556 copying build/lib/cryocare/__init__.py -> build/bdist.linux-armv7l/wheel/./cryocare 2026-02-10T07:39:09,558 running install_egg_info 2026-02-10T07:39:09,563 Copying scipion_em_cryocare.egg-info to build/bdist.linux-armv7l/wheel/./scipion_em_cryocare-4.2.4-py3.11.egg-info 2026-02-10T07:39:09,573 running install_scripts 2026-02-10T07:39:09,584 creating build/bdist.linux-armv7l/wheel/scipion_em_cryocare-4.2.4.dist-info/WHEEL 2026-02-10T07:39:09,587 creating '/tmp/pip-wheel-oewueddu/.tmp-cr3f4b2z/scipion_em_cryocare-4.2.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-02-10T07:39:09,589 adding 'cryocare/__init__.py' 2026-02-10T07:39:09,591 adding 'cryocare/bibtex.py' 2026-02-10T07:39:09,592 adding 'cryocare/constants.py' 2026-02-10T07:39:09,596 adding 'cryocare/icon.png' 2026-02-10T07:39:09,597 adding 'cryocare/objects.py' 2026-02-10T07:39:09,599 adding 'cryocare/protocols.conf' 2026-02-10T07:39:09,600 adding 'cryocare/utils.py' 2026-02-10T07:39:09,602 adding 'cryocare/protocols/__init__.py' 2026-02-10T07:39:09,603 adding 'cryocare/protocols/protocol_base.py' 2026-02-10T07:39:09,605 adding 'cryocare/protocols/protocol_load_model.py' 2026-02-10T07:39:09,607 adding 'cryocare/protocols/protocol_predict.py' 2026-02-10T07:39:09,609 adding 'cryocare/protocols/protocol_training.py' 2026-02-10T07:39:09,611 adding 'cryocare/tests/__init__.py' 2026-02-10T07:39:09,612 adding 'cryocare/tests/test_cryoCARE_workflow.py' 2026-02-10T07:39:09,620 adding 'scipion_em_cryocare-4.2.4.dist-info/licenses/LICENSE' 2026-02-10T07:39:09,621 adding 'scipion_em_cryocare-4.2.4.dist-info/METADATA' 2026-02-10T07:39:09,622 adding 'scipion_em_cryocare-4.2.4.dist-info/WHEEL' 2026-02-10T07:39:09,623 adding 'scipion_em_cryocare-4.2.4.dist-info/entry_points.txt' 2026-02-10T07:39:09,624 adding 'scipion_em_cryocare-4.2.4.dist-info/top_level.txt' 2026-02-10T07:39:09,625 adding 'scipion_em_cryocare-4.2.4.dist-info/RECORD' 2026-02-10T07:39:09,627 removing build/bdist.linux-armv7l/wheel 2026-02-10T07:39:09,730 Building wheel for scipion-em-cryocare (pyproject.toml): finished with status 'done' 2026-02-10T07:39:09,736 Created wheel for scipion-em-cryocare: filename=scipion_em_cryocare-4.2.4-py3-none-any.whl size=61596 sha256=72fc1860488a2af14d8fdc7925e4d6d644375353e69efb3a6d51f487a96f5214 2026-02-10T07:39:09,737 Stored in directory: /tmp/pip-ephem-wheel-cache-mq_d7lbj/wheels/9d/c1/4d/5ac809121cc24bcce172b18e58e3339ab61863d91b8095168a 2026-02-10T07:39:09,749 Successfully built scipion-em-cryocare 2026-02-10T07:39:09,754 Removed build tracker: '/tmp/pip-build-tracker-fxb7ph6e'