2026-02-10T09:46:09,958 Created temporary directory: /tmp/pip-ephem-wheel-cache-5965ndtu 2026-02-10T09:46:09,960 Created temporary directory: /tmp/pip-build-tracker-iabaq77s 2026-02-10T09:46:09,961 Initialized build tracking at /tmp/pip-build-tracker-iabaq77s 2026-02-10T09:46:09,961 Created build tracker: /tmp/pip-build-tracker-iabaq77s 2026-02-10T09:46:09,962 Entered build tracker: /tmp/pip-build-tracker-iabaq77s 2026-02-10T09:46:09,962 Created temporary directory: /tmp/pip-wheel-iiwmk5oo 2026-02-10T09:46:09,965 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-02-10T09:46:09,968 Created temporary directory: /tmp/pip-ephem-wheel-cache-jw0ogiuc 2026-02-10T09:46:09,992 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-02-10T09:46:09,995 2 location(s) to search for versions of pyslow5: 2026-02-10T09:46:09,995 * https://pypi.org/simple/pyslow5/ 2026-02-10T09:46:09,995 * https://www.piwheels.org/simple/pyslow5/ 2026-02-10T09:46:09,996 Fetching project page and analyzing links: https://pypi.org/simple/pyslow5/ 2026-02-10T09:46:09,997 Getting page https://pypi.org/simple/pyslow5/ 2026-02-10T09:46:09,998 Found index url https://pypi.org/simple 2026-02-10T09:46:10,220 Fetched page https://pypi.org/simple/pyslow5/ as application/vnd.pypi.simple.v1+json 2026-02-10T09:46:10,232 Found link https://files.pythonhosted.org/packages/23/0d/38c8cfedd09e7f753347b6ecd717a101c7236daf2ecccb34d44cedc6f125/pyslow5-0.2.0a1.tar.gz (from https://pypi.org/simple/pyslow5/), version: 0.2.0a1 2026-02-10T09:46:10,233 Found link https://files.pythonhosted.org/packages/41/8b/eed2c94d79c0af2a69cddfcbc774697dbac35e0a053f7bfd452a629aca4a/pyslow5-0.3.0a1.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.3.0a1 2026-02-10T09:46:10,234 Found link https://files.pythonhosted.org/packages/f5/5d/dbbfdb907972c60c3df0cf2e055b307101f0244717b3b84bc58db8c5fe5c/pyslow5-0.3.0.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.3.0 2026-02-10T09:46:10,236 Found link https://files.pythonhosted.org/packages/83/db/b907cf8f56a7d32c7daf087cd83050b6fcf5e9fc0bf16c6bd1a685b98831/pyslow5-0.4.0.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.4.0 2026-02-10T09:46:10,237 Found link https://files.pythonhosted.org/packages/bd/f7/a70be3cd8265e6b5f12819526b90c1a6cb86a3e515da2831c99858f9a239/pyslow5-0.5.0a1.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.5.0a1 2026-02-10T09:46:10,238 Found link https://files.pythonhosted.org/packages/f2/8e/cc65540c51e93847d6d6302b2fff701ee10e464898844414449e05a4d333/pyslow5-0.5.0a2.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.5.0a2 2026-02-10T09:46:10,239 Found link https://files.pythonhosted.org/packages/ad/4a/43f267cff4fac073b610a2b1eeb219c0be3ca775c937e3811c438ee2577e/pyslow5-0.5.0.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.5.0 2026-02-10T09:46:10,240 Found link https://files.pythonhosted.org/packages/3b/8b/a5bb994f4c963f8b969ab4a8c4c46f01ed4b95239fbb2b1180c77452f50b/pyslow5-0.6.0.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.6.0 2026-02-10T09:46:10,241 Found link https://files.pythonhosted.org/packages/04/d6/970f6da0fce1afd315a3e763ec8a7175791cce0ef5d08968a5fef2c0add0/pyslow5-0.7.0.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.7.0 2026-02-10T09:46:10,242 Found link https://files.pythonhosted.org/packages/d5/aa/815199ef79e407b2fba5e16b8d83c2bb7e00a640d30e67921d2f672e0d9d/pyslow5-0.8.0.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.8.0 2026-02-10T09:46:10,243 Found link https://files.pythonhosted.org/packages/28/1e/d4377af23de1ab4535ebe911e6b34afa6ee5d8a33a9b20388076f3ebca2e/pyslow5-0.9.0.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.9.0 2026-02-10T09:46:10,244 Found link https://files.pythonhosted.org/packages/78/f1/0f9a1ed7f046356b78aee6ff4f254898012b0c0a61e06eec7c5248099a0c/pyslow5-1.0.0.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 1.0.0 2026-02-10T09:46:10,245 Skipping link: No binaries permitted for pyslow5: 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https://files.pythonhosted.org/packages/f3/fb/9c71f2eba2d7adcc935eaa85ed61e85409eeeb3bf74f45192e04b079954a/pyslow5-1.1.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,253 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/97/16/534a42c24cb4d14c05cf1001a5bd1c5a596c3beba755fd6f8be41921845a/pyslow5-1.1.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,254 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/6a/9c/c379eda73ac5f913ba5351e6724fbdfb5c249caada336e661b79c7a10c6f/pyslow5-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,254 Found link https://files.pythonhosted.org/packages/96/80/ef430871b57cb97e2ab2449140fd00deec6cd9e8c71249676d561a45862a/pyslow5-1.1.0.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 1.1.0 2026-02-10T09:46:10,255 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/ed/75/92c29964f34e48c8e4326a7576ec507117e23023d87a9f3aa5b3def15574/pyslow5-1.2.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,256 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/9e/13/8159dd4662250081dbfadd9d9a60e5e909831711d0b06e0f50fb9cdce6d1/pyslow5-1.2.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,256 Skipping link: No binaries permitted for pyslow5: 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https://files.pythonhosted.org/packages/24/47/4312d21e5b91ea049d5ab9afe7d28b5cad12f6e42d146c89149579c306ce/pyslow5-1.3.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,267 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/9c/4a/31c07537f63f75a55a45e7376fcbadb6011038a3acebcf5c8845e1f2d95b/pyslow5-1.3.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,267 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/38/62/2d35426ba601653c052397d940f0bbbfb4f4d778472daed25fc5df3484ba/pyslow5-1.3.1-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,268 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/12/bf/a15c2916ef6e8af084e5ad2c63878bb492f905f8d29843ab49afe7b59511/pyslow5-1.3.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,268 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/08/28/ba7b47257ffa446f8c655c98a28c8a2964887c100690806b78757ee4c483/pyslow5-1.3.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,269 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/bd/e1/bcec4cda878b34b74e32a8d7c95e188934a428e915c02a80cdb38eaedcaa/pyslow5-1.3.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,270 Found link https://files.pythonhosted.org/packages/f0/38/7fc669dd35422170e76f70dcfe284b9c2dacf2644038c4427973de33a1f8/pyslow5-1.3.1.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 1.3.1 2026-02-10T09:46:10,271 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/41/11/8fa387c0bcf60829836d494040d7cd2c8ee5704522a473a502b478af2d70/pyslow5-1.4.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,271 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/6b/d8/a295f075474d91507e76a742ccb901c6fab74b42032c1674e2db04e4ec85/pyslow5-1.4.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,272 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/53/f1/2d9a0c10997673c6538b890f35108d0eb7fdb743b4541dae35329fdb5bb4/pyslow5-1.4.0-cp312-cp312-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,272 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/c7/1c/b07d6a03075398523e5f765c375ae0e79434f0253f7e8121651c754be58b/pyslow5-1.4.0-cp313-cp313-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,273 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/52/2c/5e9cca9ea047749f853575bdb45d1e1c80199e3690c51c31de80c1c5b991/pyslow5-1.4.0-cp314-cp314-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,273 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/89/2c/24af9976e5705d2256b774e798ea778ac050c580f819720792e07fffc53c/pyslow5-1.4.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,274 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/4b/90/6bd223cbbb3ee7622caf6bd8c35697cfe6a74720dd5eb3d745f9ee799c87/pyslow5-1.4.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,274 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/68/67/127112153b5170ac7a4937d0648820f4f3b1e7dab0fb5d3b4c6928a54af3/pyslow5-1.4.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,275 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/f4/a9/00f2f86c80fcbfeb87c32a7e73ce9b3492553938f484e4fee40f18a3c42a/pyslow5-1.4.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,276 Found link https://files.pythonhosted.org/packages/37/87/de9484abc4b1433552bd9d8674a2ce7dcca2041a140540688ffa5de68c0e/pyslow5-1.4.0.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 1.4.0 2026-02-10T09:46:10,277 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyslow5/ 2026-02-10T09:46:10,278 Getting page https://www.piwheels.org/simple/pyslow5/ 2026-02-10T09:46:10,279 Found index url https://www.piwheels.org/simple 2026-02-10T09:46:10,440 Fetched page https://www.piwheels.org/simple/pyslow5/ as text/html 2026-02-10T09:46:10,469 Skipping link: No binaries permitted for pyslow5: https://archive1.piwheels.org/simple/pyslow5/pyslow5-1.3.1-cp311-cp311-linux_armv6l.whl#sha256=b80381e78f1d1b65b380975cb91dabc2c6d6ea90bbc8b236d0b5d27944917e75 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,470 Skipping link: No binaries permitted for pyslow5: https://archive1.piwheels.org/simple/pyslow5/pyslow5-1.3.1-cp311-cp311-linux_armv7l.whl#sha256=b80381e78f1d1b65b380975cb91dabc2c6d6ea90bbc8b236d0b5d27944917e75 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,470 Skipping link: No binaries permitted for pyslow5: https://archive1.piwheels.org/simple/pyslow5/pyslow5-1.3.1-cp313-cp313-linux_armv6l.whl#sha256=8b81a96a4aae60199a0a3ae410452e2bea471e638d729c92e02907b5e7dbc8c5 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,471 Skipping link: No binaries permitted for pyslow5: 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https://archive1.piwheels.org/simple/pyslow5/pyslow5-0.3.0-cp35-cp35m-linux_armv6l.whl#sha256=89f8c303a4b46e5d4d93a60ce5231face90b841baa1e27b4b8fc2f2d73d36d2d (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,520 Skipping link: No binaries permitted for pyslow5: https://archive1.piwheels.org/simple/pyslow5/pyslow5-0.3.0-cp35-cp35m-linux_armv7l.whl#sha256=89f8c303a4b46e5d4d93a60ce5231face90b841baa1e27b4b8fc2f2d73d36d2d (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,520 Skipping link: No binaries permitted for pyslow5: https://archive1.piwheels.org/simple/pyslow5/pyslow5-0.3.0-cp37-cp37m-linux_armv6l.whl#sha256=0fc9a145e085fb51abea1d14962378dd6746af7d623b3c773a21236b69a07f7d (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,521 Skipping link: No binaries permitted for pyslow5: https://archive1.piwheels.org/simple/pyslow5/pyslow5-0.3.0-cp37-cp37m-linux_armv7l.whl#sha256=0fc9a145e085fb51abea1d14962378dd6746af7d623b3c773a21236b69a07f7d (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,521 Skipping link: No binaries permitted for pyslow5: https://archive1.piwheels.org/simple/pyslow5/pyslow5-0.3.0-cp39-cp39-linux_armv6l.whl#sha256=b701f6753a8e33639159a38a9ed09212abf70cb80b413fff7245fc904d17a8de (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,522 Skipping link: No binaries permitted for pyslow5: https://archive1.piwheels.org/simple/pyslow5/pyslow5-0.3.0-cp39-cp39-linux_armv7l.whl#sha256=b701f6753a8e33639159a38a9ed09212abf70cb80b413fff7245fc904d17a8de (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,523 Skipping link: No binaries permitted for pyslow5: https://archive1.piwheels.org/simple/pyslow5/pyslow5-0.3.0-cp313-cp313-linux_armv6l.whl#sha256=cb5c3d6020ee96a699a03731e6ee18d3dff3ad436983dd740de4d7379f2cd76f (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,523 Skipping link: No binaries permitted for pyslow5: https://archive1.piwheels.org/simple/pyslow5/pyslow5-0.3.0-cp313-cp313-linux_armv7l.whl#sha256=cb5c3d6020ee96a699a03731e6ee18d3dff3ad436983dd740de4d7379f2cd76f (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,524 Skipping link: No binaries permitted for pyslow5: https://archive1.piwheels.org/simple/pyslow5/pyslow5-0.3.0a1-cp35-cp35m-linux_armv6l.whl#sha256=4125554be93c113129cf73a27c1b57f46b186115dc541cf7bb02b3161800ff06 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,525 Skipping link: No binaries permitted for pyslow5: https://archive1.piwheels.org/simple/pyslow5/pyslow5-0.3.0a1-cp35-cp35m-linux_armv7l.whl#sha256=4125554be93c113129cf73a27c1b57f46b186115dc541cf7bb02b3161800ff06 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,526 Skipping link: No binaries permitted for pyslow5: https://archive1.piwheels.org/simple/pyslow5/pyslow5-0.3.0a1-cp37-cp37m-linux_armv6l.whl#sha256=f3b339ad5eb12b3614fd8cbfa976565490be6471edb885f1518c44748f7f6e7c (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,526 Skipping link: No binaries permitted for pyslow5: https://archive1.piwheels.org/simple/pyslow5/pyslow5-0.3.0a1-cp37-cp37m-linux_armv7l.whl#sha256=f3b339ad5eb12b3614fd8cbfa976565490be6471edb885f1518c44748f7f6e7c (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,526 Skipping link: No binaries permitted for pyslow5: https://archive1.piwheels.org/simple/pyslow5/pyslow5-0.3.0a1-cp39-cp39-linux_armv6l.whl#sha256=c237e6b28164ceb880925c3306fad541230757b454e99331d9e703e174f93044 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,527 Skipping link: No binaries permitted for pyslow5: https://archive1.piwheels.org/simple/pyslow5/pyslow5-0.3.0a1-cp39-cp39-linux_armv7l.whl#sha256=c237e6b28164ceb880925c3306fad541230757b454e99331d9e703e174f93044 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,527 Skipping link: No binaries permitted for pyslow5: https://archive1.piwheels.org/simple/pyslow5/pyslow5-0.3.0a1-cp313-cp313-linux_armv6l.whl#sha256=089b611d56304888b5cc4ec84e630a28e362126f6373d71e5db4fc8b26e63c37 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,528 Skipping link: No binaries permitted for pyslow5: https://archive1.piwheels.org/simple/pyslow5/pyslow5-0.3.0a1-cp313-cp313-linux_armv7l.whl#sha256=089b611d56304888b5cc4ec84e630a28e362126f6373d71e5db4fc8b26e63c37 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,529 Skipping link: No binaries permitted for pyslow5: https://archive1.piwheels.org/simple/pyslow5/pyslow5-0.2.0a1-cp35-cp35m-linux_armv6l.whl#sha256=778a99e023f739e757f3a8ac054aaf245b3c3855b3781ba5f9f17403f1f2f323 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,529 Skipping link: No binaries permitted for pyslow5: https://archive1.piwheels.org/simple/pyslow5/pyslow5-0.2.0a1-cp35-cp35m-linux_armv7l.whl#sha256=778a99e023f739e757f3a8ac054aaf245b3c3855b3781ba5f9f17403f1f2f323 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,530 Skipping link: No binaries permitted for pyslow5: https://archive1.piwheels.org/simple/pyslow5/pyslow5-0.2.0a1-cp37-cp37m-linux_armv6l.whl#sha256=1e44f77d160ed7f970085e6bbd34c072504cd012441dfab74f56f9115217f60a (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,531 Skipping link: No binaries permitted for pyslow5: https://archive1.piwheels.org/simple/pyslow5/pyslow5-0.2.0a1-cp37-cp37m-linux_armv7l.whl#sha256=1e44f77d160ed7f970085e6bbd34c072504cd012441dfab74f56f9115217f60a (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,531 Skipping link: No binaries permitted for pyslow5: https://archive1.piwheels.org/simple/pyslow5/pyslow5-0.2.0a1-cp39-cp39-linux_armv6l.whl#sha256=cde6479a69345d4c2bef55beeb0ab67909d74e8f91a2ec5ef1a0f390aaa3c0dd (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,532 Skipping link: No binaries permitted for pyslow5: https://archive1.piwheels.org/simple/pyslow5/pyslow5-0.2.0a1-cp39-cp39-linux_armv7l.whl#sha256=cde6479a69345d4c2bef55beeb0ab67909d74e8f91a2ec5ef1a0f390aaa3c0dd (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,532 Skipping link: No binaries permitted for pyslow5: https://archive1.piwheels.org/simple/pyslow5/pyslow5-0.2.0a1-cp313-cp313-linux_armv6l.whl#sha256=97a7643ee4a097194855d334065b72472e582627e872ea22f85ce8c195ecb94d (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,533 Skipping link: No binaries permitted for pyslow5: https://archive1.piwheels.org/simple/pyslow5/pyslow5-0.2.0a1-cp313-cp313-linux_armv7l.whl#sha256=97a7643ee4a097194855d334065b72472e582627e872ea22f85ce8c195ecb94d (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2026-02-10T09:46:10,534 Skipping link: not a file: https://www.piwheels.org/simple/pyslow5/ 2026-02-10T09:46:10,534 Skipping link: not a file: https://pypi.org/simple/pyslow5/ 2026-02-10T09:46:10,555 Given no hashes to check 1 links for project 'pyslow5': discarding no candidates 2026-02-10T09:46:10,573 Collecting pyslow5==1.4.0 2026-02-10T09:46:10,575 Created temporary directory: /tmp/pip-unpack-aafj36mc 2026-02-10T09:46:10,713 Downloading pyslow5-1.4.0.tar.gz (656 kB) 2026-02-10T09:46:11,233 Added pyslow5==1.4.0 from https://files.pythonhosted.org/packages/37/87/de9484abc4b1433552bd9d8674a2ce7dcca2041a140540688ffa5de68c0e/pyslow5-1.4.0.tar.gz to build tracker '/tmp/pip-build-tracker-iabaq77s' 2026-02-10T09:46:11,234 Running setup.py (path:/tmp/pip-wheel-iiwmk5oo/pyslow5_f67d8cfbda1443e9af22c8e2167fd210/setup.py) egg_info for package pyslow5 2026-02-10T09:46:11,235 Created temporary directory: /tmp/pip-pip-egg-info-5fpjiddx 2026-02-10T09:46:11,236 Preparing metadata (setup.py): started 2026-02-10T09:46:11,237 Running command python setup.py egg_info 2026-02-10T09:46:12,879 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2026-02-10T09:46:12,879 !! 2026-02-10T09:46:12,881 ******************************************************************************** 2026-02-10T09:46:12,881 Requirements should be satisfied by a PEP 517 installer. 2026-02-10T09:46:12,882 If you are using pip, you can try `pip install --use-pep517`. 2026-02-10T09:46:12,883 This deprecation is overdue, please update your project and remove deprecated 2026-02-10T09:46:12,884 calls to avoid build errors in the future. 2026-02-10T09:46:12,884 ******************************************************************************** 2026-02-10T09:46:12,885 !! 2026-02-10T09:46:12,886 dist.fetch_build_eggs(dist.setup_requires) 2026-02-10T09:46:13,088 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-02-10T09:46:13,088 !! 2026-02-10T09:46:13,089 ******************************************************************************** 2026-02-10T09:46:13,090 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-02-10T09:46:13,091 License :: OSI Approved :: MIT License 2026-02-10T09:46:13,092 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-10T09:46:13,093 ******************************************************************************** 2026-02-10T09:46:13,094 !! 2026-02-10T09:46:13,095 self._finalize_license_expression() 2026-02-10T09:46:13,120 running egg_info 2026-02-10T09:46:13,150 creating /tmp/pip-pip-egg-info-5fpjiddx/pyslow5.egg-info 2026-02-10T09:46:13,151 writing /tmp/pip-pip-egg-info-5fpjiddx/pyslow5.egg-info/PKG-INFO 2026-02-10T09:46:13,155 writing dependency_links to /tmp/pip-pip-egg-info-5fpjiddx/pyslow5.egg-info/dependency_links.txt 2026-02-10T09:46:13,157 writing requirements to /tmp/pip-pip-egg-info-5fpjiddx/pyslow5.egg-info/requires.txt 2026-02-10T09:46:13,158 writing top-level names to /tmp/pip-pip-egg-info-5fpjiddx/pyslow5.egg-info/top_level.txt 2026-02-10T09:46:13,160 writing manifest file '/tmp/pip-pip-egg-info-5fpjiddx/pyslow5.egg-info/SOURCES.txt' 2026-02-10T09:46:13,219 reading manifest file '/tmp/pip-pip-egg-info-5fpjiddx/pyslow5.egg-info/SOURCES.txt' 2026-02-10T09:46:13,220 reading manifest template 'MANIFEST.in' 2026-02-10T09:46:13,241 writing manifest file '/tmp/pip-pip-egg-info-5fpjiddx/pyslow5.egg-info/SOURCES.txt' 2026-02-10T09:46:13,378 Preparing metadata (setup.py): finished with status 'done' 2026-02-10T09:46:13,383 Source in /tmp/pip-wheel-iiwmk5oo/pyslow5_f67d8cfbda1443e9af22c8e2167fd210 has version 1.4.0, which satisfies requirement pyslow5==1.4.0 from https://files.pythonhosted.org/packages/37/87/de9484abc4b1433552bd9d8674a2ce7dcca2041a140540688ffa5de68c0e/pyslow5-1.4.0.tar.gz 2026-02-10T09:46:13,384 Removed pyslow5==1.4.0 from https://files.pythonhosted.org/packages/37/87/de9484abc4b1433552bd9d8674a2ce7dcca2041a140540688ffa5de68c0e/pyslow5-1.4.0.tar.gz from build tracker '/tmp/pip-build-tracker-iabaq77s' 2026-02-10T09:46:13,393 Created temporary directory: /tmp/pip-unpack-94y97swo 2026-02-10T09:46:13,393 Building wheels for collected packages: pyslow5 2026-02-10T09:46:13,398 Created temporary directory: /tmp/pip-wheel-duhn54fx 2026-02-10T09:46:13,399 Building wheel for pyslow5 (setup.py): started 2026-02-10T09:46:13,400 Destination directory: /tmp/pip-wheel-duhn54fx 2026-02-10T09:46:13,400 Running command python setup.py bdist_wheel 2026-02-10T09:46:14,340 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2026-02-10T09:46:14,340 !! 2026-02-10T09:46:14,341 ******************************************************************************** 2026-02-10T09:46:14,342 Requirements should be satisfied by a PEP 517 installer. 2026-02-10T09:46:14,342 If you are using pip, you can try `pip install --use-pep517`. 2026-02-10T09:46:14,344 This deprecation is overdue, please update your project and remove deprecated 2026-02-10T09:46:14,344 calls to avoid build errors in the future. 2026-02-10T09:46:14,345 ******************************************************************************** 2026-02-10T09:46:14,346 !! 2026-02-10T09:46:14,347 dist.fetch_build_eggs(dist.setup_requires) 2026-02-10T09:46:14,549 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-02-10T09:46:14,550 !! 2026-02-10T09:46:14,551 ******************************************************************************** 2026-02-10T09:46:14,552 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-02-10T09:46:14,553 License :: OSI Approved :: MIT License 2026-02-10T09:46:14,554 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-10T09:46:14,555 ******************************************************************************** 2026-02-10T09:46:14,556 !! 2026-02-10T09:46:14,556 self._finalize_license_expression() 2026-02-10T09:46:14,557 running bdist_wheel 2026-02-10T09:46:14,663 running build 2026-02-10T09:46:14,664 running build_ext 2026-02-10T09:46:15,452 Compiling python/pyslow5.pyx because it changed. 2026-02-10T09:46:15,472 [1/1] Cythonizing python/pyslow5.pyx 2026-02-10T09:46:23,663 building 'pyslow5' extension 2026-02-10T09:46:23,665 creating build/temp.linux-armv7l-cpython-311/python 2026-02-10T09:46:23,667 creating build/temp.linux-armv7l-cpython-311/src 2026-02-10T09:46:23,668 creating build/temp.linux-armv7l-cpython-311/thirdparty/streamvbyte/src 2026-02-10T09:46:23,671 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.11/dist-packages/numpy/_core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.11 -c python/pyslow5.c -o build/temp.linux-armv7l-cpython-311/python/pyslow5.o -g -Wall -O2 -std=c99 -DSLOW5_ENABLE_MT=1 -mfpu=neon 2026-02-10T09:47:41,523 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.11/dist-packages/numpy/_core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.11 -c src/slow5.c -o build/temp.linux-armv7l-cpython-311/src/slow5.o -g -Wall -O2 -std=c99 -DSLOW5_ENABLE_MT=1 -mfpu=neon 2026-02-10T09:47:41,756 src/slow5.c: In function ‘slow5_init’: 2026-02-10T09:47:41,758 src/slow5.c:193:51: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2026-02-10T09:47:41,758 193 | if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) { 2026-02-10T09:47:41,759 | ^~ 2026-02-10T09:47:41,761 src/slow5.c: In function ‘slow5_init_empty’: 2026-02-10T09:47:41,761 src/slow5.c:267:51: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2026-02-10T09:47:41,762 267 | if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) { 2026-02-10T09:47:41,762 | ^~ 2026-02-10T09:47:41,780 In file included from src/slow5.c:44: 2026-02-10T09:47:41,781 src/slow5.c: In function ‘slow5_hdr_init’: 2026-02-10T09:47:41,781 src/slow5_byte.h:162:24: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2026-02-10T09:47:41,782 162 | ( (slow5_bigend) ? (slow5_fread_bigend((ptr), (size), (nitems), (stream))) : (fread((ptr), (size), (nitems), (stream))) ) 2026-02-10T09:47:41,782 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-10T09:47:41,783 src/slow5.c:823:20: note: in expansion of macro ‘SLOW5_FREAD’ 2026-02-10T09:47:41,784 823 | } else if (SLOW5_FREAD(&header->num_read_groups, sizeof header->num_read_groups, 1, fp) != 1) { 2026-02-10T09:47:41,784 | ^~~~~~~~~~~ 2026-02-10T09:47:41,785 src/slow5_byte.h:162:24: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2026-02-10T09:47:41,786 162 | ( (slow5_bigend) ? (slow5_fread_bigend((ptr), (size), (nitems), (stream))) : (fread((ptr), (size), (nitems), (stream))) ) 2026-02-10T09:47:41,786 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-10T09:47:41,787 src/slow5.c:834:20: note: in expansion of macro ‘SLOW5_FREAD’ 2026-02-10T09:47:41,788 834 | } else if (SLOW5_FREAD(&header_size, sizeof header_size, 1, fp) != 1) { 2026-02-10T09:47:41,788 | ^~~~~~~~~~~ 2026-02-10T09:47:41,834 src/slow5.c: In function ‘slow5_get_mem’: 2026-02-10T09:47:41,836 src/slow5.c:2467:49: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2026-02-10T09:47:41,837 2467 | if (pread(s5p->meta.fd, mem, bytes, offset) != bytes) { 2026-02-10T09:47:41,838 | ^~ 2026-02-10T09:47:41,839 In file included from include/slow5/slow5.h:55, 2026-02-10T09:47:41,840 from src/slow5.c:40: 2026-02-10T09:47:41,841 include/slow5/slow5_error.h:80:28: warning: format ‘%zu’ expects argument of type ‘size_t’, but argument 5 has type ‘off_t’ {aka ‘long int’} [-Wformat=] 2026-02-10T09:47:41,841 80 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m " 2026-02-10T09:47:41,842 | ^~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-10T09:47:41,843 include/slow5/slow5_error.h:117:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’ 2026-02-10T09:47:41,844 117 | fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \ 2026-02-10T09:47:41,845 | ^~~~~~~~~~~~~~~~~~ 2026-02-10T09:47:41,845 src/slow5.c:2468:9: note: in expansion of macro ‘SLOW5_ERROR’ 2026-02-10T09:47:41,846 2468 | SLOW5_ERROR("Failed to pread '%zu' bytes at offset '%zu' from slow5 file '%s'.", 2026-02-10T09:47:41,846 | ^~~~~~~~~~~ 2026-02-10T09:47:41,862 src/slow5.c: In function ‘slow5_rec_aux_parse’: 2026-02-10T09:47:41,865 include/slow5/slow5_error.h:80:28: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-02-10T09:47:41,865 80 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m " 2026-02-10T09:47:41,866 | ^~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-10T09:47:41,867 include/slow5/slow5_error.h:117:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’ 2026-02-10T09:47:41,867 117 | fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \ 2026-02-10T09:47:41,868 | ^~~~~~~~~~~~~~~~~~ 2026-02-10T09:47:41,868 src/slow5.c:3094:17: note: in expansion of macro ‘SLOW5_ERROR’ 2026-02-10T09:47:41,868 3094 | SLOW5_ERROR("Auxiliary field '%s' is missing in record. At offset '%" PRIu64 "' and record size is '%" PRIu64 "'.", aux_meta->attrs[i], offset, read_size); 2026-02-10T09:47:41,869 | ^~~~~~~~~~~ 2026-02-10T09:47:41,870 src/slow5_byte.h:204:27: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2026-02-10T09:47:41,871 204 | for(int64_t i=0; i<(nitems); i++){ \ 2026-02-10T09:47:41,872 | ^ 2026-02-10T09:47:41,872 src/slow5.c:3134:25: note: in expansion of macro ‘SLOW5_BYTE_SWAP_ARRAY_VOID’ 2026-02-10T09:47:41,873 3134 | SLOW5_BYTE_SWAP_ARRAY_VOID(data, 2, len); 2026-02-10T09:47:41,874 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-10T09:47:41,962 src/slow5.c: In function ‘slow5_rec_to_mem’: 2026-02-10T09:47:41,965 src/slow5_byte.h:204:27: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2026-02-10T09:47:41,966 204 | for(int64_t i=0; i<(nitems); i++){ \ 2026-02-10T09:47:41,966 | ^ 2026-02-10T09:47:41,967 src/slow5.c:3989:66: note: in expansion of macro ‘SLOW5_BYTE_SWAP_ARRAY_VOID’ 2026-02-10T09:47:41,968 3989 | memcpy(mem + curr_len, read->raw_signal, bytes_raw_sig); SLOW5_BYTE_SWAP_ARRAY_VOID(mem + curr_len, sizeof *read->raw_signal, read->len_raw_signal); 2026-02-10T09:47:41,968 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-10T09:47:41,973 src/slow5_byte.h:204:27: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2026-02-10T09:47:41,974 204 | for(int64_t i=0; i<(nitems); i++){ \ 2026-02-10T09:47:41,974 | ^ 2026-02-10T09:47:41,975 src/slow5.c:4032:29: note: in expansion of macro ‘SLOW5_BYTE_SWAP_ARRAY_VOID’ 2026-02-10T09:47:41,976 4032 | SLOW5_BYTE_SWAP_ARRAY_VOID(mem + curr_len, 2, aux_data.len); 2026-02-10T09:47:41,976 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-10T09:47:53,173 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.11/dist-packages/numpy/_core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.11 -c src/slow5_idx.c -o build/temp.linux-armv7l-cpython-311/src/slow5_idx.o -g -Wall -O2 -std=c99 -DSLOW5_ENABLE_MT=1 -mfpu=neon 2026-02-10T09:47:53,377 src/slow5_idx.c: In function ‘slow5_idx_build’: 2026-02-10T09:47:53,378 src/slow5_idx.c:189:20: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2026-02-10T09:47:53,379 189 | if(curr_offset == -1){ 2026-02-10T09:47:53,379 | ^~ 2026-02-10T09:47:53,380 src/slow5_idx.c:216:19: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2026-02-10T09:47:53,380 216 | if(offset == -1){ 2026-02-10T09:47:53,381 | ^~ 2026-02-10T09:47:53,381 src/slow5_idx.c:242:23: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2026-02-10T09:47:53,382 242 | if(offset == -1){ 2026-02-10T09:47:53,382 | ^~ 2026-02-10T09:47:53,386 In file included from src/slow5_idx.c:9: 2026-02-10T09:47:53,387 src/slow5_idx.c: In function ‘slow5_idx_write’: 2026-02-10T09:47:53,387 src/slow5_byte.h:159:24: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2026-02-10T09:47:53,388 159 | ( (slow5_bigend) ? (slow5_fwrite_bigend((ptr), (size), (nitems), (stream))) : (fwrite((ptr), (size), (nitems), (stream))) ) 2026-02-10T09:47:53,389 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-10T09:47:53,389 src/slow5_idx.c:395:13: note: in expansion of macro ‘SLOW5_FWRITE’ 2026-02-10T09:47:53,390 395 | if (SLOW5_FWRITE(&read_id_len, sizeof read_id_len, 1, index->fp) != 1){ 2026-02-10T09:47:53,391 | ^~~~~~~~~~~~ 2026-02-10T09:47:53,392 src/slow5_byte.h:159:24: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2026-02-10T09:47:53,392 159 | ( (slow5_bigend) ? (slow5_fwrite_bigend((ptr), (size), (nitems), (stream))) : (fwrite((ptr), (size), (nitems), (stream))) ) 2026-02-10T09:47:53,393 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-10T09:47:53,394 src/slow5_idx.c:401:13: note: in expansion of macro ‘SLOW5_FWRITE’ 2026-02-10T09:47:53,395 401 | if (SLOW5_FWRITE(&read_index.offset, sizeof read_index.offset, 1, index->fp) != 1 ){ 2026-02-10T09:47:53,396 | ^~~~~~~~~~~~ 2026-02-10T09:47:53,396 src/slow5_byte.h:159:24: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2026-02-10T09:47:53,398 159 | ( (slow5_bigend) ? (slow5_fwrite_bigend((ptr), (size), (nitems), (stream))) : (fwrite((ptr), (size), (nitems), (stream))) ) 2026-02-10T09:47:53,398 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-10T09:47:53,399 src/slow5_idx.c:404:13: note: in expansion of macro ‘SLOW5_FWRITE’ 2026-02-10T09:47:53,400 404 | if (SLOW5_FWRITE(&read_index.size, sizeof read_index.size, 1, index->fp) != 1) { 2026-02-10T09:47:53,400 | ^~~~~~~~~~~~ 2026-02-10T09:47:53,401 src/slow5_idx.c: In function ‘slow5_idx_read’: 2026-02-10T09:47:53,402 src/slow5_byte.h:162:24: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2026-02-10T09:47:53,403 162 | ( (slow5_bigend) ? (slow5_fread_bigend((ptr), (size), (nitems), (stream))) : (fread((ptr), (size), (nitems), (stream))) ) 2026-02-10T09:47:53,403 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-10T09:47:53,404 src/slow5_idx.c:447:13: note: in expansion of macro ‘SLOW5_FREAD’ 2026-02-10T09:47:53,405 447 | if (SLOW5_FREAD(&read_id_len, sizeof read_id_len, 1, index->fp) != 1) { 2026-02-10T09:47:53,405 | ^~~~~~~~~~~ 2026-02-10T09:47:53,406 src/slow5_byte.h:162:24: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2026-02-10T09:47:53,406 162 | ( (slow5_bigend) ? (slow5_fread_bigend((ptr), (size), (nitems), (stream))) : (fread((ptr), (size), (nitems), (stream))) ) 2026-02-10T09:47:53,407 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-10T09:47:53,407 src/slow5_idx.c:485:13: note: in expansion of macro ‘SLOW5_FREAD’ 2026-02-10T09:47:53,408 485 | if (SLOW5_FREAD(&offset, sizeof offset, 1, index->fp) != 1 || 2026-02-10T09:47:53,409 | ^~~~~~~~~~~ 2026-02-10T09:47:53,409 src/slow5_byte.h:162:24: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2026-02-10T09:47:53,410 162 | ( (slow5_bigend) ? (slow5_fread_bigend((ptr), (size), (nitems), (stream))) : (fread((ptr), (size), (nitems), (stream))) ) 2026-02-10T09:47:53,410 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-10T09:47:53,411 src/slow5_idx.c:486:17: note: in expansion of macro ‘SLOW5_FREAD’ 2026-02-10T09:47:53,411 486 | SLOW5_FREAD(&size, sizeof size, 1, index->fp) != 1) { 2026-02-10T09:47:53,412 | ^~~~~~~~~~~ 2026-02-10T09:47:54,564 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.11/dist-packages/numpy/_core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.11 -c src/slow5_misc.c -o build/temp.linux-armv7l-cpython-311/src/slow5_misc.o -g -Wall -O2 -std=c99 -DSLOW5_ENABLE_MT=1 -mfpu=neon 2026-02-10T09:47:55,076 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.11/dist-packages/numpy/_core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.11 -c src/slow5_mt.c -o build/temp.linux-armv7l-cpython-311/src/slow5_mt.o -g -Wall -O2 -std=c99 -DSLOW5_ENABLE_MT=1 -mfpu=neon 2026-02-10T09:47:55,822 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.11/dist-packages/numpy/_core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.11 -c src/slow5_press.c -o build/temp.linux-armv7l-cpython-311/src/slow5_press.o -g -Wall -O2 -std=c99 -DSLOW5_ENABLE_MT=1 -mfpu=neon 2026-02-10T09:47:56,024 src/slow5_press.c: In function ‘slow5_fwrite_compress’: 2026-02-10T09:47:56,025 src/slow5_press.c:586:27: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2026-02-10T09:47:56,026 586 | if (bytes != size * nmemb || ferror(fp)) { 2026-02-10T09:47:56,027 | ^~ 2026-02-10T09:47:56,028 src/slow5_press.c:587:31: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2026-02-10T09:47:56,028 587 | if (bytes != size * nmemb) { 2026-02-10T09:47:56,029 | ^~ 2026-02-10T09:47:56,031 src/slow5_press.c: In function ‘slow5_pread_depress_solo’: 2026-02-10T09:47:56,032 src/slow5_press.c:714:47: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2026-02-10T09:47:56,032 714 | if ((ret = pread(fd, raw, count, offset)) != count) { 2026-02-10T09:47:56,033 | ^~ 2026-02-10T09:47:56,052 src/slow5_press.c: In function ‘ex_depress’: 2026-02-10T09:47:56,052 src/slow5_press.c:1490:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2026-02-10T09:47:56,053 1490 | if (ret !=nex_pos_press){ 2026-02-10T09:47:56,053 | ^~ 2026-02-10T09:47:56,054 src/slow5_press.c:1520:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2026-02-10T09:47:56,055 1520 | if (ret != nex_press){ 2026-02-10T09:47:56,055 | ^~ 2026-02-10T09:47:57,999 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.11/dist-packages/numpy/_core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.11 -c thirdparty/streamvbyte/src/streamvbyte_decode.c -o build/temp.linux-armv7l-cpython-311/thirdparty/streamvbyte/src/streamvbyte_decode.o -g -Wall -O2 -std=c99 -DSLOW5_ENABLE_MT=1 -mfpu=neon 2026-02-10T09:47:58,613 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.11/dist-packages/numpy/_core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.11 -c thirdparty/streamvbyte/src/streamvbyte_encode.c -o build/temp.linux-armv7l-cpython-311/thirdparty/streamvbyte/src/streamvbyte_encode.o -g -Wall -O2 -std=c99 -DSLOW5_ENABLE_MT=1 -mfpu=neon 2026-02-10T09:47:59,186 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.11/dist-packages/numpy/_core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.11 -c thirdparty/streamvbyte/src/streamvbyte_zigzag.c -o build/temp.linux-armv7l-cpython-311/thirdparty/streamvbyte/src/streamvbyte_zigzag.o -g -Wall -O2 -std=c99 -DSLOW5_ENABLE_MT=1 -mfpu=neon 2026-02-10T09:47:59,342 creating build/lib.linux-armv7l-cpython-311 2026-02-10T09:47:59,342 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/python/pyslow5.o build/temp.linux-armv7l-cpython-311/src/slow5.o build/temp.linux-armv7l-cpython-311/src/slow5_idx.o build/temp.linux-armv7l-cpython-311/src/slow5_misc.o build/temp.linux-armv7l-cpython-311/src/slow5_mt.o build/temp.linux-armv7l-cpython-311/src/slow5_press.o build/temp.linux-armv7l-cpython-311/thirdparty/streamvbyte/src/streamvbyte_decode.o build/temp.linux-armv7l-cpython-311/thirdparty/streamvbyte/src/streamvbyte_encode.o build/temp.linux-armv7l-cpython-311/thirdparty/streamvbyte/src/streamvbyte_zigzag.o -L. -L/usr/lib/arm-linux-gnueabihf -lm -lz -o build/lib.linux-armv7l-cpython-311/pyslow5.cpython-311-arm-linux-gnueabihf.so 2026-02-10T09:47:59,930 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2026-02-10T09:47:59,931 !! 2026-02-10T09:47:59,932 ******************************************************************************** 2026-02-10T09:47:59,933 Please avoid running ``setup.py`` directly. 2026-02-10T09:47:59,934 Instead, use pypa/build, pypa/installer or other 2026-02-10T09:47:59,934 standards-based tools. 2026-02-10T09:47:59,936 This deprecation is overdue, please update your project and remove deprecated 2026-02-10T09:47:59,937 calls to avoid build errors in the future. 2026-02-10T09:47:59,938 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2026-02-10T09:47:59,938 ******************************************************************************** 2026-02-10T09:47:59,939 !! 2026-02-10T09:47:59,940 self.initialize_options() 2026-02-10T09:47:59,968 installing to build/bdist.linux-armv7l/wheel 2026-02-10T09:47:59,969 running install 2026-02-10T09:47:59,993 running install_lib 2026-02-10T09:48:00,020 creating build/bdist.linux-armv7l/wheel 2026-02-10T09:48:00,030 copying build/lib.linux-armv7l-cpython-311/pyslow5.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/. 2026-02-10T09:48:00,167 running install_egg_info 2026-02-10T09:48:00,200 running egg_info 2026-02-10T09:48:00,229 writing pyslow5.egg-info/PKG-INFO 2026-02-10T09:48:00,233 writing dependency_links to pyslow5.egg-info/dependency_links.txt 2026-02-10T09:48:00,235 writing requirements to pyslow5.egg-info/requires.txt 2026-02-10T09:48:00,236 writing top-level names to pyslow5.egg-info/top_level.txt 2026-02-10T09:48:00,267 reading manifest file 'pyslow5.egg-info/SOURCES.txt' 2026-02-10T09:48:00,288 reading manifest template 'MANIFEST.in' 2026-02-10T09:48:00,306 writing manifest file 'pyslow5.egg-info/SOURCES.txt' 2026-02-10T09:48:00,307 Copying pyslow5.egg-info to build/bdist.linux-armv7l/wheel/./pyslow5-1.4.0-py3.11.egg-info 2026-02-10T09:48:00,318 running install_scripts 2026-02-10T09:48:00,368 creating build/bdist.linux-armv7l/wheel/pyslow5-1.4.0.dist-info/WHEEL 2026-02-10T09:48:00,371 creating '/tmp/pip-wheel-duhn54fx/pyslow5-1.4.0-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-02-10T09:48:01,134 adding 'pyslow5.cpython-311-arm-linux-gnueabihf.so' 2026-02-10T09:48:01,159 adding 'pyslow5-1.4.0.dist-info/METADATA' 2026-02-10T09:48:01,160 adding 'pyslow5-1.4.0.dist-info/WHEEL' 2026-02-10T09:48:01,161 adding 'pyslow5-1.4.0.dist-info/top_level.txt' 2026-02-10T09:48:01,162 adding 'pyslow5-1.4.0.dist-info/RECORD' 2026-02-10T09:48:01,178 removing build/bdist.linux-armv7l/wheel 2026-02-10T09:48:01,883 Building wheel for pyslow5 (setup.py): finished with status 'done' 2026-02-10T09:48:01,901 Created wheel for pyslow5: filename=pyslow5-1.4.0-cp311-cp311-linux_armv7l.whl size=1505182 sha256=c7b263297d739b75424c98974d54788fd4361f24dd77cdce61a90ab12adf09d9 2026-02-10T09:48:01,903 Stored in directory: /tmp/pip-ephem-wheel-cache-jw0ogiuc/wheels/9a/99/ca/34f2f10d214f6bb5de2b76ff5d93481bd559ae5f8028314a7d 2026-02-10T09:48:01,916 Successfully built pyslow5 2026-02-10T09:48:01,954 Removed build tracker: '/tmp/pip-build-tracker-iabaq77s'