2026-02-10T11:14:45,060 Created temporary directory: /tmp/pip-ephem-wheel-cache-wjvg6hhm 2026-02-10T11:14:45,062 Created temporary directory: /tmp/pip-build-tracker-jsv7t_qc 2026-02-10T11:14:45,063 Initialized build tracking at /tmp/pip-build-tracker-jsv7t_qc 2026-02-10T11:14:45,063 Created build tracker: /tmp/pip-build-tracker-jsv7t_qc 2026-02-10T11:14:45,063 Entered build tracker: /tmp/pip-build-tracker-jsv7t_qc 2026-02-10T11:14:45,064 Created temporary directory: /tmp/pip-wheel-vi7lulil 2026-02-10T11:14:45,067 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-02-10T11:14:45,070 Created temporary directory: /tmp/pip-ephem-wheel-cache-tg_b88od 2026-02-10T11:14:45,095 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-02-10T11:14:45,098 2 location(s) to search for versions of scipion-em-tomo3d: 2026-02-10T11:14:45,098 * https://pypi.org/simple/scipion-em-tomo3d/ 2026-02-10T11:14:45,098 * https://www.piwheels.org/simple/scipion-em-tomo3d/ 2026-02-10T11:14:45,099 Fetching project page and analyzing links: https://pypi.org/simple/scipion-em-tomo3d/ 2026-02-10T11:14:45,100 Getting page https://pypi.org/simple/scipion-em-tomo3d/ 2026-02-10T11:14:45,101 Found index url https://pypi.org/simple 2026-02-10T11:14:45,380 Fetched page https://pypi.org/simple/scipion-em-tomo3d/ as application/vnd.pypi.simple.v1+json 2026-02-10T11:14:45,384 Found link https://files.pythonhosted.org/packages/6e/7e/a68dc39919161191c35e9bcec3475f69740f49f8f8138499ccfddf0f5f0b/scipion-em-tomo3d-3.1.0.tar.gz (from https://pypi.org/simple/scipion-em-tomo3d/), version: 3.1.0 2026-02-10T11:14:45,384 Skipping link: No binaries permitted for scipion-em-tomo3d: https://files.pythonhosted.org/packages/cb/5b/aac5f9a318fe6bbb63e6ca8afd02528b2982f008a87129feefed6409bc31/scipion_em_tomo3d-3.1.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo3d/) 2026-02-10T11:14:45,385 Found link https://files.pythonhosted.org/packages/9d/4e/4ed2583cdc9b328f31ce35dac04e8dcf3a7e6c4c28cb5a2b8e3d0de28f66/scipion-em-tomo3d-3.1.1.tar.gz (from https://pypi.org/simple/scipion-em-tomo3d/), version: 3.1.1 2026-02-10T11:14:45,386 Skipping link: No binaries permitted for scipion-em-tomo3d: https://files.pythonhosted.org/packages/f8/4c/c4fe28e7ecff9521fe708df2b9de13ca97d1d03104a77a16b1240fdef7c1/scipion_em_tomo3d-3.1.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo3d/) 2026-02-10T11:14:45,387 Found link https://files.pythonhosted.org/packages/1b/47/7f33f0e4a4d8afc771f402c102cf3f2ef1f2034825afca65a1dbf940c0c3/scipion-em-tomo3d-3.1.2.tar.gz (from https://pypi.org/simple/scipion-em-tomo3d/), version: 3.1.2 2026-02-10T11:14:45,387 Skipping link: No binaries permitted for scipion-em-tomo3d: https://files.pythonhosted.org/packages/bb/d4/ec3e1c200ae6c204eca1fc45f208fb5d39bcfe64767475c5c33deb595424/scipion_em_tomo3d-3.1.2-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo3d/) 2026-02-10T11:14:45,388 Found link https://files.pythonhosted.org/packages/c3/b9/caa468dab576021ee73907b2fefc314818a02a8dc7d7c29c46f88812eb2b/scipion-em-tomo3d-3.1.3.tar.gz (from https://pypi.org/simple/scipion-em-tomo3d/), version: 3.1.3 2026-02-10T11:14:45,389 Skipping link: No binaries permitted for scipion-em-tomo3d: https://files.pythonhosted.org/packages/a1/2d/498a056cfcef0ec4b0c77e469a946d6b622d92e3b50bc21d799d5dc173b7/scipion_em_tomo3d-3.1.3-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo3d/) 2026-02-10T11:14:45,389 Found link https://files.pythonhosted.org/packages/a0/c8/608d0803be9f03aa5046683e42a3ff77c37441a98fc37cc53b7a8a95c11a/scipion-em-tomo3d-3.1.4.tar.gz (from https://pypi.org/simple/scipion-em-tomo3d/), version: 3.1.4 2026-02-10T11:14:45,390 Skipping link: No binaries permitted for scipion-em-tomo3d: https://files.pythonhosted.org/packages/27/6f/7944b907374c4e7bc37c9e1310f6e29ff25dbec87d5b25b17ca736dc84bb/scipion_em_tomo3d-3.1.4-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo3d/) 2026-02-10T11:14:45,391 Found link https://files.pythonhosted.org/packages/ad/69/e5078246d342a97cce6b1e41dcbe1d90ae1fbb9293303423627b753049f3/scipion-em-tomo3d-3.2.0.tar.gz (from https://pypi.org/simple/scipion-em-tomo3d/), version: 3.2.0 2026-02-10T11:14:45,392 Skipping link: No binaries permitted for scipion-em-tomo3d: https://files.pythonhosted.org/packages/6f/d6/4c0d3ff077f11c64c7a24a934201e43dc4fb358d013292e5d130a06383b0/scipion_em_tomo3d-3.2.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo3d/) 2026-02-10T11:14:45,392 Skipping link: No binaries permitted for scipion-em-tomo3d: https://files.pythonhosted.org/packages/23/ef/e43daebbbe7c4a02b7c647ac2a0dfc1d8eda51ff70872a1afea5e407ffa2/scipion_em_tomo3d-3.3.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo3d/) (requires-python:>=3.8) 2026-02-10T11:14:45,393 Found link https://files.pythonhosted.org/packages/94/40/985adf1d5512ddbb5e2227665573a80d429206aca6ec0a66cdd9ca917b0c/scipion_em_tomo3d-3.3.0.tar.gz (from https://pypi.org/simple/scipion-em-tomo3d/) (requires-python:>=3.8), version: 3.3.0 2026-02-10T11:14:45,394 Skipping link: No binaries permitted for scipion-em-tomo3d: https://files.pythonhosted.org/packages/53/e7/03839e14214e253c248ba6d8eedd77789a470635c3489ef0acee945cfb9e/scipion_em_tomo3d-3.4.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo3d/) (requires-python:>=3.8) 2026-02-10T11:14:45,395 Found link https://files.pythonhosted.org/packages/d4/56/31498479859e3af830187df6f657a8e1e0883b9cd914e4f5dac431e6379f/scipion_em_tomo3d-3.4.1.tar.gz (from https://pypi.org/simple/scipion-em-tomo3d/) (requires-python:>=3.8), version: 3.4.1 2026-02-10T11:14:45,395 Fetching project page and analyzing links: https://www.piwheels.org/simple/scipion-em-tomo3d/ 2026-02-10T11:14:45,396 Getting page https://www.piwheels.org/simple/scipion-em-tomo3d/ 2026-02-10T11:14:45,397 Found index url https://www.piwheels.org/simple 2026-02-10T11:14:45,593 Fetched page https://www.piwheels.org/simple/scipion-em-tomo3d/ as text/html 2026-02-10T11:14:45,594 Skipping link: No binaries permitted for scipion-em-tomo3d: https://archive1.piwheels.org/simple/scipion-em-tomo3d/scipion_em_tomo3d-3.3.0-py3-none-any.whl#sha256=1cd2384a0f4c240fae0d131391175ee7e53f430ffa9216b4af06ea55b9004798 (from https://www.piwheels.org/simple/scipion-em-tomo3d/) (requires-python:>=3.8) 2026-02-10T11:14:45,595 Skipping link: not a file: https://www.piwheels.org/simple/scipion-em-tomo3d/ 2026-02-10T11:14:45,596 Skipping link: not a file: https://pypi.org/simple/scipion-em-tomo3d/ 2026-02-10T11:14:45,616 Given no hashes to check 1 links for project 'scipion-em-tomo3d': discarding no candidates 2026-02-10T11:14:45,634 Collecting scipion-em-tomo3d==3.4.1 2026-02-10T11:14:45,636 Created temporary directory: /tmp/pip-unpack-5b49utpn 2026-02-10T11:14:45,772 Downloading scipion_em_tomo3d-3.4.1.tar.gz (34 kB) 2026-02-10T11:14:45,857 Added scipion-em-tomo3d==3.4.1 from https://files.pythonhosted.org/packages/d4/56/31498479859e3af830187df6f657a8e1e0883b9cd914e4f5dac431e6379f/scipion_em_tomo3d-3.4.1.tar.gz to build tracker '/tmp/pip-build-tracker-jsv7t_qc' 2026-02-10T11:14:45,862 Created temporary directory: /tmp/pip-build-env-knql5k8n 2026-02-10T11:14:45,866 Installing build dependencies: started 2026-02-10T11:14:45,868 Running command pip subprocess to install build dependencies 2026-02-10T11:14:47,038 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-02-10T11:14:47,582 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-02-10T11:14:47,605 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-02-10T11:14:49,368 Collecting setuptools 2026-02-10T11:14:49,387 Using cached setuptools-82.0.0-py3-none-any.whl (1.0 MB) 2026-02-10T11:14:49,648 Collecting wheel 2026-02-10T11:14:49,662 Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB) 2026-02-10T11:14:49,844 Collecting packaging>=24.0 2026-02-10T11:14:49,862 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-02-10T11:14:52,850 Installing collected packages: setuptools, packaging, wheel 2026-02-10T11:14:56,347 Creating /tmp/pip-build-env-knql5k8n/overlay/local/bin 2026-02-10T11:14:56,349 changing mode of /tmp/pip-build-env-knql5k8n/overlay/local/bin/wheel to 755 2026-02-10T11:14:56,371 Successfully installed packaging-26.0 setuptools-82.0.0 wheel-0.46.3 2026-02-10T11:14:56,648 Installing build dependencies: finished with status 'done' 2026-02-10T11:14:56,655 Getting requirements to build wheel: started 2026-02-10T11:14:56,656 Running command Getting requirements to build wheel 2026-02-10T11:14:57,259 No `packages` or `py_modules` configuration, performing automatic discovery. 2026-02-10T11:14:57,259 `flat-layout` detected -- analysing . 2026-02-10T11:14:57,275 discovered packages -- ['tomo3d', 'tomo3d.protocols', 'tomo3d.tests'] 2026-02-10T11:14:57,281 /tmp/pip-build-env-knql5k8n/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-02-10T11:14:57,281 !! 2026-02-10T11:14:57,283 ******************************************************************************** 2026-02-10T11:14:57,283 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-02-10T11:14:57,284 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-02-10T11:14:57,285 or your builds will no longer be supported. 2026-02-10T11:14:57,286 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-10T11:14:57,287 ******************************************************************************** 2026-02-10T11:14:57,288 !! 2026-02-10T11:14:57,288 corresp(dist, value, root_dir) 2026-02-10T11:14:57,361 /tmp/pip-build-env-knql5k8n/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-02-10T11:14:57,362 !! 2026-02-10T11:14:57,363 ******************************************************************************** 2026-02-10T11:14:57,364 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-02-10T11:14:57,365 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-02-10T11:14:57,366 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-10T11:14:57,367 ******************************************************************************** 2026-02-10T11:14:57,368 !! 2026-02-10T11:14:57,369 dist._finalize_license_expression() 2026-02-10T11:14:57,369 /tmp/pip-build-env-knql5k8n/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-02-10T11:14:57,370 !! 2026-02-10T11:14:57,371 ******************************************************************************** 2026-02-10T11:14:57,372 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-02-10T11:14:57,373 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-02-10T11:14:57,375 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-10T11:14:57,377 ******************************************************************************** 2026-02-10T11:14:57,379 !! 2026-02-10T11:14:57,379 self._finalize_license_expression() 2026-02-10T11:14:57,380 running egg_info 2026-02-10T11:14:57,381 writing scipion_em_tomo3d.egg-info/PKG-INFO 2026-02-10T11:14:57,384 writing dependency_links to scipion_em_tomo3d.egg-info/dependency_links.txt 2026-02-10T11:14:57,386 writing entry points to scipion_em_tomo3d.egg-info/entry_points.txt 2026-02-10T11:14:57,387 writing requirements to scipion_em_tomo3d.egg-info/requires.txt 2026-02-10T11:14:57,388 writing top-level names to scipion_em_tomo3d.egg-info/top_level.txt 2026-02-10T11:14:57,409 reading manifest file 'scipion_em_tomo3d.egg-info/SOURCES.txt' 2026-02-10T11:14:57,412 reading manifest template 'MANIFEST.in' 2026-02-10T11:14:57,414 warning: manifest_maker: MANIFEST.in, line 2: unknown action 'inlcude' 2026-02-10T11:14:57,415 adding license file 'LICENSE' 2026-02-10T11:14:57,418 writing manifest file 'scipion_em_tomo3d.egg-info/SOURCES.txt' 2026-02-10T11:14:57,515 Getting requirements to build wheel: finished with status 'done' 2026-02-10T11:14:57,518 Created temporary directory: /tmp/pip-modern-metadata-36t0a7tt 2026-02-10T11:14:57,520 Preparing metadata (pyproject.toml): started 2026-02-10T11:14:57,522 Running command Preparing metadata (pyproject.toml) 2026-02-10T11:14:58,084 No `packages` or `py_modules` configuration, performing automatic discovery. 2026-02-10T11:14:58,084 `flat-layout` detected -- analysing . 2026-02-10T11:14:58,099 discovered packages -- ['tomo3d', 'tomo3d.protocols', 'tomo3d.tests'] 2026-02-10T11:14:58,104 /tmp/pip-build-env-knql5k8n/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-02-10T11:14:58,105 !! 2026-02-10T11:14:58,106 ******************************************************************************** 2026-02-10T11:14:58,106 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-02-10T11:14:58,108 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-02-10T11:14:58,108 or your builds will no longer be supported. 2026-02-10T11:14:58,110 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-10T11:14:58,110 ******************************************************************************** 2026-02-10T11:14:58,112 !! 2026-02-10T11:14:58,112 corresp(dist, value, root_dir) 2026-02-10T11:14:58,182 /tmp/pip-build-env-knql5k8n/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-02-10T11:14:58,183 !! 2026-02-10T11:14:58,184 ******************************************************************************** 2026-02-10T11:14:58,185 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-02-10T11:14:58,186 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-02-10T11:14:58,187 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-10T11:14:58,187 ******************************************************************************** 2026-02-10T11:14:58,189 !! 2026-02-10T11:14:58,189 dist._finalize_license_expression() 2026-02-10T11:14:58,190 /tmp/pip-build-env-knql5k8n/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-02-10T11:14:58,191 !! 2026-02-10T11:14:58,192 ******************************************************************************** 2026-02-10T11:14:58,193 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-02-10T11:14:58,194 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-02-10T11:14:58,195 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-10T11:14:58,195 ******************************************************************************** 2026-02-10T11:14:58,196 !! 2026-02-10T11:14:58,196 self._finalize_license_expression() 2026-02-10T11:14:58,197 running dist_info 2026-02-10T11:14:58,204 creating /tmp/pip-modern-metadata-36t0a7tt/scipion_em_tomo3d.egg-info 2026-02-10T11:14:58,205 writing /tmp/pip-modern-metadata-36t0a7tt/scipion_em_tomo3d.egg-info/PKG-INFO 2026-02-10T11:14:58,208 writing dependency_links to /tmp/pip-modern-metadata-36t0a7tt/scipion_em_tomo3d.egg-info/dependency_links.txt 2026-02-10T11:14:58,210 writing entry points to /tmp/pip-modern-metadata-36t0a7tt/scipion_em_tomo3d.egg-info/entry_points.txt 2026-02-10T11:14:58,211 writing requirements to /tmp/pip-modern-metadata-36t0a7tt/scipion_em_tomo3d.egg-info/requires.txt 2026-02-10T11:14:58,212 writing top-level names to /tmp/pip-modern-metadata-36t0a7tt/scipion_em_tomo3d.egg-info/top_level.txt 2026-02-10T11:14:58,213 writing manifest file '/tmp/pip-modern-metadata-36t0a7tt/scipion_em_tomo3d.egg-info/SOURCES.txt' 2026-02-10T11:14:58,233 reading manifest file '/tmp/pip-modern-metadata-36t0a7tt/scipion_em_tomo3d.egg-info/SOURCES.txt' 2026-02-10T11:14:58,235 reading manifest template 'MANIFEST.in' 2026-02-10T11:14:58,236 warning: manifest_maker: MANIFEST.in, line 2: unknown action 'inlcude' 2026-02-10T11:14:58,237 adding license file 'LICENSE' 2026-02-10T11:14:58,240 writing manifest file '/tmp/pip-modern-metadata-36t0a7tt/scipion_em_tomo3d.egg-info/SOURCES.txt' 2026-02-10T11:14:58,241 creating '/tmp/pip-modern-metadata-36t0a7tt/scipion_em_tomo3d-3.4.1.dist-info' 2026-02-10T11:14:58,369 Preparing metadata (pyproject.toml): finished with status 'done' 2026-02-10T11:14:58,374 Source in /tmp/pip-wheel-vi7lulil/scipion-em-tomo3d_3a8f6950db504f8789205a7808c9d23d has version 3.4.1, which satisfies requirement scipion-em-tomo3d==3.4.1 from https://files.pythonhosted.org/packages/d4/56/31498479859e3af830187df6f657a8e1e0883b9cd914e4f5dac431e6379f/scipion_em_tomo3d-3.4.1.tar.gz 2026-02-10T11:14:58,375 Removed scipion-em-tomo3d==3.4.1 from https://files.pythonhosted.org/packages/d4/56/31498479859e3af830187df6f657a8e1e0883b9cd914e4f5dac431e6379f/scipion_em_tomo3d-3.4.1.tar.gz from build tracker '/tmp/pip-build-tracker-jsv7t_qc' 2026-02-10T11:14:58,381 Created temporary directory: /tmp/pip-unpack-01cs1a82 2026-02-10T11:14:58,381 Building wheels for collected packages: scipion-em-tomo3d 2026-02-10T11:14:58,386 Created temporary directory: /tmp/pip-wheel-tj_88x3y 2026-02-10T11:14:58,386 Destination directory: /tmp/pip-wheel-tj_88x3y 2026-02-10T11:14:58,388 Building wheel for scipion-em-tomo3d (pyproject.toml): started 2026-02-10T11:14:58,390 Running command Building wheel for scipion-em-tomo3d (pyproject.toml) 2026-02-10T11:14:58,934 No `packages` or `py_modules` configuration, performing automatic discovery. 2026-02-10T11:14:58,934 `flat-layout` detected -- analysing . 2026-02-10T11:14:58,949 discovered packages -- ['tomo3d', 'tomo3d.protocols', 'tomo3d.tests'] 2026-02-10T11:14:58,954 /tmp/pip-build-env-knql5k8n/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-02-10T11:14:58,954 !! 2026-02-10T11:14:58,956 ******************************************************************************** 2026-02-10T11:14:58,956 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-02-10T11:14:58,958 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-02-10T11:14:58,958 or your builds will no longer be supported. 2026-02-10T11:14:58,959 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-10T11:14:58,959 ******************************************************************************** 2026-02-10T11:14:58,960 !! 2026-02-10T11:14:58,961 corresp(dist, value, root_dir) 2026-02-10T11:14:59,022 /tmp/pip-build-env-knql5k8n/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-02-10T11:14:59,023 !! 2026-02-10T11:14:59,024 ******************************************************************************** 2026-02-10T11:14:59,024 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-02-10T11:14:59,025 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-02-10T11:14:59,026 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-10T11:14:59,027 ******************************************************************************** 2026-02-10T11:14:59,028 !! 2026-02-10T11:14:59,028 dist._finalize_license_expression() 2026-02-10T11:14:59,029 /tmp/pip-build-env-knql5k8n/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-02-10T11:14:59,029 !! 2026-02-10T11:14:59,030 ******************************************************************************** 2026-02-10T11:14:59,030 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-02-10T11:14:59,031 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-02-10T11:14:59,032 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-10T11:14:59,033 ******************************************************************************** 2026-02-10T11:14:59,034 !! 2026-02-10T11:14:59,035 self._finalize_license_expression() 2026-02-10T11:14:59,035 running bdist_wheel 2026-02-10T11:14:59,047 running build 2026-02-10T11:14:59,048 running build_py 2026-02-10T11:14:59,053 creating build/lib/tomo3d 2026-02-10T11:14:59,056 copying tomo3d/__init__.py -> build/lib/tomo3d 2026-02-10T11:14:59,058 copying tomo3d/bibtex.py -> build/lib/tomo3d 2026-02-10T11:14:59,060 copying tomo3d/constants.py -> build/lib/tomo3d 2026-02-10T11:14:59,062 creating build/lib/tomo3d/protocols 2026-02-10T11:14:59,063 copying tomo3d/protocols/protocol_denoise_tomogram.py -> build/lib/tomo3d/protocols 2026-02-10T11:14:59,066 copying tomo3d/protocols/protocol_align_ts.py -> build/lib/tomo3d/protocols 2026-02-10T11:14:59,069 copying tomo3d/protocols/protocol_base.py -> build/lib/tomo3d/protocols 2026-02-10T11:14:59,071 copying tomo3d/protocols/__init__.py -> build/lib/tomo3d/protocols 2026-02-10T11:14:59,073 copying tomo3d/protocols/protocol_reconstruct_tomogram.py -> build/lib/tomo3d/protocols 2026-02-10T11:14:59,075 copying tomo3d/protocols/protocol_motion_compensation.py -> build/lib/tomo3d/protocols 2026-02-10T11:14:59,079 creating build/lib/tomo3d/tests 2026-02-10T11:14:59,080 copying tomo3d/tests/__init__.py -> build/lib/tomo3d/tests 2026-02-10T11:14:59,081 copying tomo3d/tests/_test_protocol_alignts.py -> build/lib/tomo3d/tests 2026-02-10T11:14:59,083 copying tomo3d/tests/test_protocol_reconstruct_tomogram.py -> build/lib/tomo3d/tests 2026-02-10T11:14:59,086 copying tomo3d/tests/test_protocol_denoise_tomogram.py -> build/lib/tomo3d/tests 2026-02-10T11:14:59,087 running egg_info 2026-02-10T11:14:59,097 writing scipion_em_tomo3d.egg-info/PKG-INFO 2026-02-10T11:14:59,099 writing dependency_links to scipion_em_tomo3d.egg-info/dependency_links.txt 2026-02-10T11:14:59,101 writing entry points to scipion_em_tomo3d.egg-info/entry_points.txt 2026-02-10T11:14:59,102 writing requirements to scipion_em_tomo3d.egg-info/requires.txt 2026-02-10T11:14:59,103 writing top-level names to scipion_em_tomo3d.egg-info/top_level.txt 2026-02-10T11:14:59,113 reading manifest file 'scipion_em_tomo3d.egg-info/SOURCES.txt' 2026-02-10T11:14:59,116 reading manifest template 'MANIFEST.in' 2026-02-10T11:14:59,118 warning: manifest_maker: MANIFEST.in, line 2: unknown action 'inlcude' 2026-02-10T11:14:59,119 adding license file 'LICENSE' 2026-02-10T11:14:59,121 writing manifest file 'scipion_em_tomo3d.egg-info/SOURCES.txt' 2026-02-10T11:14:59,125 copying tomo3d/protocols.conf -> build/lib/tomo3d 2026-02-10T11:14:59,137 installing to build/bdist.linux-armv7l/wheel 2026-02-10T11:14:59,137 running install 2026-02-10T11:14:59,161 running install_lib 2026-02-10T11:14:59,167 creating build/bdist.linux-armv7l/wheel 2026-02-10T11:14:59,169 creating build/bdist.linux-armv7l/wheel/tomo3d 2026-02-10T11:14:59,171 copying build/lib/tomo3d/__init__.py -> build/bdist.linux-armv7l/wheel/./tomo3d 2026-02-10T11:14:59,173 copying build/lib/tomo3d/protocols.conf -> build/bdist.linux-armv7l/wheel/./tomo3d 2026-02-10T11:14:59,179 creating build/bdist.linux-armv7l/wheel/tomo3d/protocols 2026-02-10T11:14:59,181 copying build/lib/tomo3d/protocols/protocol_denoise_tomogram.py -> build/bdist.linux-armv7l/wheel/./tomo3d/protocols 2026-02-10T11:14:59,184 copying build/lib/tomo3d/protocols/protocol_align_ts.py -> build/bdist.linux-armv7l/wheel/./tomo3d/protocols 2026-02-10T11:14:59,186 copying build/lib/tomo3d/protocols/protocol_base.py -> build/bdist.linux-armv7l/wheel/./tomo3d/protocols 2026-02-10T11:14:59,189 copying build/lib/tomo3d/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/./tomo3d/protocols 2026-02-10T11:14:59,190 copying build/lib/tomo3d/protocols/protocol_reconstruct_tomogram.py -> build/bdist.linux-armv7l/wheel/./tomo3d/protocols 2026-02-10T11:14:59,194 copying build/lib/tomo3d/protocols/protocol_motion_compensation.py -> build/bdist.linux-armv7l/wheel/./tomo3d/protocols 2026-02-10T11:14:59,198 copying build/lib/tomo3d/bibtex.py -> build/bdist.linux-armv7l/wheel/./tomo3d 2026-02-10T11:14:59,202 copying build/lib/tomo3d/constants.py -> build/bdist.linux-armv7l/wheel/./tomo3d 2026-02-10T11:14:59,204 creating build/bdist.linux-armv7l/wheel/tomo3d/tests 2026-02-10T11:14:59,205 copying build/lib/tomo3d/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./tomo3d/tests 2026-02-10T11:14:59,207 copying build/lib/tomo3d/tests/_test_protocol_alignts.py -> build/bdist.linux-armv7l/wheel/./tomo3d/tests 2026-02-10T11:14:59,210 copying build/lib/tomo3d/tests/test_protocol_reconstruct_tomogram.py -> build/bdist.linux-armv7l/wheel/./tomo3d/tests 2026-02-10T11:14:59,213 copying build/lib/tomo3d/tests/test_protocol_denoise_tomogram.py -> build/bdist.linux-armv7l/wheel/./tomo3d/tests 2026-02-10T11:14:59,217 running install_egg_info 2026-02-10T11:14:59,222 Copying scipion_em_tomo3d.egg-info to build/bdist.linux-armv7l/wheel/./scipion_em_tomo3d-3.4.1-py3.11.egg-info 2026-02-10T11:14:59,233 running install_scripts 2026-02-10T11:14:59,246 creating build/bdist.linux-armv7l/wheel/scipion_em_tomo3d-3.4.1.dist-info/WHEEL 2026-02-10T11:14:59,249 creating '/tmp/pip-wheel-tj_88x3y/.tmp-xyctd_1f/scipion_em_tomo3d-3.4.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-02-10T11:14:59,258 adding 'scipion_em_tomo3d-3.4.1.dist-info/licenses/LICENSE' 2026-02-10T11:14:59,260 adding 'tomo3d/__init__.py' 2026-02-10T11:14:59,262 adding 'tomo3d/bibtex.py' 2026-02-10T11:14:59,263 adding 'tomo3d/constants.py' 2026-02-10T11:14:59,264 adding 'tomo3d/protocols.conf' 2026-02-10T11:14:59,266 adding 'tomo3d/protocols/__init__.py' 2026-02-10T11:14:59,268 adding 'tomo3d/protocols/protocol_align_ts.py' 2026-02-10T11:14:59,271 adding 'tomo3d/protocols/protocol_base.py' 2026-02-10T11:14:59,273 adding 'tomo3d/protocols/protocol_denoise_tomogram.py' 2026-02-10T11:14:59,275 adding 'tomo3d/protocols/protocol_motion_compensation.py' 2026-02-10T11:14:59,277 adding 'tomo3d/protocols/protocol_reconstruct_tomogram.py' 2026-02-10T11:14:59,279 adding 'tomo3d/tests/__init__.py' 2026-02-10T11:14:59,280 adding 'tomo3d/tests/_test_protocol_alignts.py' 2026-02-10T11:14:59,281 adding 'tomo3d/tests/test_protocol_denoise_tomogram.py' 2026-02-10T11:14:59,283 adding 'tomo3d/tests/test_protocol_reconstruct_tomogram.py' 2026-02-10T11:14:59,284 adding 'scipion_em_tomo3d-3.4.1.dist-info/METADATA' 2026-02-10T11:14:59,285 adding 'scipion_em_tomo3d-3.4.1.dist-info/WHEEL' 2026-02-10T11:14:59,286 adding 'scipion_em_tomo3d-3.4.1.dist-info/entry_points.txt' 2026-02-10T11:14:59,287 adding 'scipion_em_tomo3d-3.4.1.dist-info/top_level.txt' 2026-02-10T11:14:59,288 adding 'scipion_em_tomo3d-3.4.1.dist-info/RECORD' 2026-02-10T11:14:59,290 removing build/bdist.linux-armv7l/wheel 2026-02-10T11:14:59,396 Building wheel for scipion-em-tomo3d (pyproject.toml): finished with status 'done' 2026-02-10T11:14:59,401 Created wheel for scipion-em-tomo3d: filename=scipion_em_tomo3d-3.4.1-py3-none-any.whl size=46274 sha256=0ff41484c923c67e077a6a10dd8bb0f138ce128ab64b549bdd801b3d6412e871 2026-02-10T11:14:59,402 Stored in directory: /tmp/pip-ephem-wheel-cache-tg_b88od/wheels/df/1d/9c/120461c99da074735f9e8852685f5822a6e935da6636fcdd76 2026-02-10T11:14:59,414 Successfully built scipion-em-tomo3d 2026-02-10T11:14:59,418 Removed build tracker: '/tmp/pip-build-tracker-jsv7t_qc'