2026-02-11T13:10:56,269 Created temporary directory: /tmp/pip-ephem-wheel-cache-cul1zccf 2026-02-11T13:10:56,271 Created temporary directory: /tmp/pip-build-tracker-avzgvbus 2026-02-11T13:10:56,271 Initialized build tracking at /tmp/pip-build-tracker-avzgvbus 2026-02-11T13:10:56,272 Created build tracker: /tmp/pip-build-tracker-avzgvbus 2026-02-11T13:10:56,272 Entered build tracker: /tmp/pip-build-tracker-avzgvbus 2026-02-11T13:10:56,273 Created temporary directory: /tmp/pip-wheel-29tiisqx 2026-02-11T13:10:56,276 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. 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https://archive1.piwheels.org/simple/pyretis/pyretis-1.0.0-py3-none-any.whl#sha256=87f74feafdc71bc281953ab8b2ec3f528536ccfb46acf20e82f62a906cbb8f1b (from https://www.piwheels.org/simple/pyretis/) 2026-02-11T13:10:56,817 Skipping link: No binaries permitted for pyretis: https://archive1.piwheels.org/simple/pyretis/pyretis-0.9.2.dev2-py3-none-any.whl#sha256=586c1648896c7d6bdb3dab116e6c9c385aa334a891de9851b1ce6ecbf0f50871 (from https://www.piwheels.org/simple/pyretis/) 2026-02-11T13:10:56,818 Skipping link: No binaries permitted for pyretis: https://archive1.piwheels.org/simple/pyretis/pyretis-0.9.2.dev1-py3-none-any.whl#sha256=89f937dd02475133f921c66589af2c79227b1bf697f806a3d148c0dbf8b90fb9 (from https://www.piwheels.org/simple/pyretis/) 2026-02-11T13:10:56,818 Skipping link: No binaries permitted for pyretis: https://archive1.piwheels.org/simple/pyretis/pyretis-0.9.1.dev3-py3-none-any.whl#sha256=69048708471f91b86f523979eacbb3020a9c3a8ddd0a247e7920710038aaa222 (from https://www.piwheels.org/simple/pyretis/) 2026-02-11T13:10:56,819 Skipping link: No binaries permitted for pyretis: https://archive1.piwheels.org/simple/pyretis/pyretis-0.9.1.dev2-py3-none-any.whl#sha256=7b49890b7c9049a3b95191882460f28bbe6d001fa5a0d239a76e75767f085f06 (from https://www.piwheels.org/simple/pyretis/) 2026-02-11T13:10:56,819 Skipping link: No binaries permitted for pyretis: https://archive1.piwheels.org/simple/pyretis/pyretis-0.9.1.dev1-py3-none-any.whl#sha256=a49789ff2a5ba38af509993b7197e3582493663232e93e8388c29772a3fd25de (from https://www.piwheels.org/simple/pyretis/) 2026-02-11T13:10:56,820 Skipping link: No binaries permitted for pyretis: https://archive1.piwheels.org/simple/pyretis/pyretis-0.9.1.dev0-py3-none-any.whl#sha256=60ceaa24eb72f5967e61b075c663c36858c34fd7b3aa1d90678c17623d96ed6a (from https://www.piwheels.org/simple/pyretis/) 2026-02-11T13:10:56,820 Skipping link: No binaries permitted for pyretis: https://archive1.piwheels.org/simple/pyretis/pyretis-0.9.0.dev4-py3-none-any.whl#sha256=0f3bf911ca011ad2933fca914e1e043c51433e18bc9556c33437bfe7854614b1 (from https://www.piwheels.org/simple/pyretis/) 2026-02-11T13:10:56,821 Skipping link: No binaries permitted for pyretis: https://archive1.piwheels.org/simple/pyretis/pyretis-0.9.0.dev3-py3-none-any.whl#sha256=e30ac9d8992ea7663ab67b6c1537a6a11218c9a8935609847b4070285f5e7ce2 (from https://www.piwheels.org/simple/pyretis/) 2026-02-11T13:10:56,821 Skipping link: No binaries permitted for pyretis: https://archive1.piwheels.org/simple/pyretis/pyretis-0.9.0.dev2-py3-none-any.whl#sha256=75ccbeba3e4af0ebc8aca863a058d72c867131f87183a0209d685fa011ce30cd (from https://www.piwheels.org/simple/pyretis/) 2026-02-11T13:10:56,822 Skipping link: No binaries permitted for pyretis: https://archive1.piwheels.org/simple/pyretis/pyretis-0.9.0.dev1-py3-none-any.whl#sha256=75b4dee605cfd6f444987de6f9337c68c4b314b0f0b06f171deaae3ab50aac7d (from https://www.piwheels.org/simple/pyretis/) 2026-02-11T13:10:56,822 Skipping link: No binaries permitted for pyretis: https://archive1.piwheels.org/simple/pyretis/pyretis-0.9.0.dev0-py3-none-any.whl#sha256=b66ee87892b64e1ff5bbbe97f48a6f6e140202e37580abb438c86b5352feaa5a (from https://www.piwheels.org/simple/pyretis/) 2026-02-11T13:10:56,823 Skipping link: No binaries permitted for pyretis: https://archive1.piwheels.org/simple/pyretis/pyretis-0.6.0.dev3-py3-none-any.whl#sha256=f8227c67788e36bfd6d307353e0d1154ffd7dcefb51b0d494a1174a8eab7deb5 (from https://www.piwheels.org/simple/pyretis/) 2026-02-11T13:10:56,823 Skipping link: No binaries permitted for pyretis: https://archive1.piwheels.org/simple/pyretis/pyretis-0.6.0.dev2-py3-none-any.whl#sha256=52cc4ba85f20a74c81fca485844798a20b6df74abdac39a18097581dfb59b4b7 (from https://www.piwheels.org/simple/pyretis/) 2026-02-11T13:10:56,824 Skipping link: No binaries permitted for pyretis: https://archive1.piwheels.org/simple/pyretis/pyretis-0.6.0.dev1-py3-none-any.whl#sha256=ac79c123dd208496db70c1b20ebf4efa09300a482b8f5191301250dd133f24d5 (from https://www.piwheels.org/simple/pyretis/) 2026-02-11T13:10:56,824 Skipping link: No binaries permitted for pyretis: https://archive1.piwheels.org/simple/pyretis/pyretis-0.2.1.dev2-py3-none-any.whl#sha256=8416661a5d79efe5246c710f60045538340f995dba2ad620efcd4d52408b366e (from https://www.piwheels.org/simple/pyretis/) 2026-02-11T13:10:56,825 Skipping link: No binaries permitted for pyretis: https://archive1.piwheels.org/simple/pyretis/pyretis-0.2.1.dev1-py3-none-any.whl#sha256=39198acc480d7a5f644321a09e2002f3338932ecee88ecd454cd0317509e132c (from https://www.piwheels.org/simple/pyretis/) 2026-02-11T13:10:56,826 Skipping link: No binaries permitted for pyretis: https://archive1.piwheels.org/simple/pyretis/pyretis-0.2.1.dev0-py3-none-any.whl#sha256=442b759e2fc7566b33ab7b330e5f74dd964cf5b5a3bd6fa007ccc2af428f851c (from https://www.piwheels.org/simple/pyretis/) 2026-02-11T13:10:56,826 Skipping link: No binaries permitted for pyretis: https://archive1.piwheels.org/simple/pyretis/pyretis-0.2.0.dev2-py3-none-any.whl#sha256=9b8bae9b7feac67e9848b94622197fbc08cc5246092aaf362066592f8082397a (from https://www.piwheels.org/simple/pyretis/) 2026-02-11T13:10:56,827 Skipping link: No binaries permitted for pyretis: https://archive1.piwheels.org/simple/pyretis/pyretis-0.2.0.dev1-py3-none-any.whl#sha256=544ea662a44ad7f9844db3e787742d560a60ef502ce63b4d0dc1b3990bb98ded (from https://www.piwheels.org/simple/pyretis/) 2026-02-11T13:10:56,827 Skipping link: not a file: https://www.piwheels.org/simple/pyretis/ 2026-02-11T13:10:56,828 Skipping link: not a file: https://pypi.org/simple/pyretis/ 2026-02-11T13:10:56,851 Given no hashes to check 1 links for project 'pyretis': discarding no candidates 2026-02-11T13:10:56,870 Collecting pyretis==3.0.0 2026-02-11T13:10:56,872 Created temporary directory: /tmp/pip-unpack-jd_ao3wl 2026-02-11T13:10:57,095 Downloading pyretis-3.0.0.tar.gz (1.1 MB) 2026-02-11T13:10:58,320 Added pyretis==3.0.0 from https://files.pythonhosted.org/packages/16/02/dfed2db846894b22ddd1c902de52b32e16ea2e901d0958a81f1c3a9b44c7/pyretis-3.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-avzgvbus' 2026-02-11T13:10:58,321 Running setup.py (path:/tmp/pip-wheel-29tiisqx/pyretis_02c0b66bcf434d93918061074738cce9/setup.py) egg_info for package pyretis 2026-02-11T13:10:58,322 Created temporary directory: /tmp/pip-pip-egg-info-brqm9yoq 2026-02-11T13:10:58,323 Preparing metadata (setup.py): started 2026-02-11T13:10:58,324 Running command python setup.py egg_info 2026-02-11T13:10:58,946 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'python-tag' in 'bdist_wheel' (setup.cfg), please use the underscore name 'python_tag' instead. 2026-02-11T13:10:58,946 !! 2026-02-11T13:10:58,948 ******************************************************************************** 2026-02-11T13:10:58,948 Usage of dash-separated 'python-tag' will not be supported in future 2026-02-11T13:10:58,949 versions. Please use the underscore name 'python_tag' instead. 2026-02-11T13:10:58,951 Available configuration options are listed in: 2026-02-11T13:10:58,951 https://setuptools.pypa.io/en/latest/userguide/declarative_config.html 2026-02-11T13:10:58,952 By 2026-Mar-03, you need to update your project and remove deprecated calls 2026-02-11T13:10:58,953 or your builds will no longer be supported. 2026-02-11T13:10:58,954 See https://github.com/pypa/setuptools/discussions/5011 for details. 2026-02-11T13:10:58,955 ******************************************************************************** 2026-02-11T13:10:58,956 !! 2026-02-11T13:10:58,957 opt = self._enforce_underscore(opt, section) 2026-02-11T13:10:59,270 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'python-tag' in 'bdist_wheel' (setup.cfg), please use the underscore name 'python_tag' instead. 2026-02-11T13:10:59,270 !! 2026-02-11T13:10:59,272 ******************************************************************************** 2026-02-11T13:10:59,272 Usage of dash-separated 'python-tag' will not be supported in future 2026-02-11T13:10:59,273 versions. Please use the underscore name 'python_tag' instead. 2026-02-11T13:10:59,274 (Affected: pyretis). 2026-02-11T13:10:59,275 Available configuration options are listed in: 2026-02-11T13:10:59,275 https://setuptools.pypa.io/en/latest/userguide/declarative_config.html 2026-02-11T13:10:59,277 By 2026-Mar-03, you need to update your project and remove deprecated calls 2026-02-11T13:10:59,277 or your builds will no longer be supported. 2026-02-11T13:10:59,278 See https://github.com/pypa/setuptools/discussions/5011 for details. 2026-02-11T13:10:59,279 ******************************************************************************** 2026-02-11T13:10:59,280 !! 2026-02-11T13:10:59,280 opt = self._enforce_underscore(opt, section) 2026-02-11T13:10:59,281 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-02-11T13:10:59,281 !! 2026-02-11T13:10:59,282 ******************************************************************************** 2026-02-11T13:10:59,283 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-02-11T13:10:59,284 License :: OSI Approved :: GNU Lesser General Public License v2 or later (LGPLv2+) 2026-02-11T13:10:59,284 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-11T13:10:59,285 ******************************************************************************** 2026-02-11T13:10:59,286 !! 2026-02-11T13:10:59,287 self._finalize_license_expression() 2026-02-11T13:10:59,301 running egg_info 2026-02-11T13:10:59,328 creating /tmp/pip-pip-egg-info-brqm9yoq/pyretis.egg-info 2026-02-11T13:10:59,329 writing /tmp/pip-pip-egg-info-brqm9yoq/pyretis.egg-info/PKG-INFO 2026-02-11T13:10:59,333 writing dependency_links to /tmp/pip-pip-egg-info-brqm9yoq/pyretis.egg-info/dependency_links.txt 2026-02-11T13:10:59,334 writing entry points to /tmp/pip-pip-egg-info-brqm9yoq/pyretis.egg-info/entry_points.txt 2026-02-11T13:10:59,336 writing requirements to /tmp/pip-pip-egg-info-brqm9yoq/pyretis.egg-info/requires.txt 2026-02-11T13:10:59,337 writing top-level names to /tmp/pip-pip-egg-info-brqm9yoq/pyretis.egg-info/top_level.txt 2026-02-11T13:10:59,339 writing manifest file '/tmp/pip-pip-egg-info-brqm9yoq/pyretis.egg-info/SOURCES.txt' 2026-02-11T13:10:59,574 reading manifest file '/tmp/pip-pip-egg-info-brqm9yoq/pyretis.egg-info/SOURCES.txt' 2026-02-11T13:10:59,576 reading manifest template 'MANIFEST.in' 2026-02-11T13:10:59,579 adding license file 'LICENSE' 2026-02-11T13:10:59,593 writing manifest file '/tmp/pip-pip-egg-info-brqm9yoq/pyretis.egg-info/SOURCES.txt' 2026-02-11T13:10:59,701 Preparing metadata (setup.py): finished with status 'done' 2026-02-11T13:10:59,706 Source in /tmp/pip-wheel-29tiisqx/pyretis_02c0b66bcf434d93918061074738cce9 has version 3.0.0, which satisfies requirement pyretis==3.0.0 from https://files.pythonhosted.org/packages/16/02/dfed2db846894b22ddd1c902de52b32e16ea2e901d0958a81f1c3a9b44c7/pyretis-3.0.0.tar.gz 2026-02-11T13:10:59,707 Removed pyretis==3.0.0 from https://files.pythonhosted.org/packages/16/02/dfed2db846894b22ddd1c902de52b32e16ea2e901d0958a81f1c3a9b44c7/pyretis-3.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-avzgvbus' 2026-02-11T13:10:59,712 Created temporary directory: /tmp/pip-unpack-1zgg4w3_ 2026-02-11T13:10:59,713 Building wheels for collected packages: pyretis 2026-02-11T13:10:59,717 Created temporary directory: /tmp/pip-wheel-lr7lhte8 2026-02-11T13:10:59,717 Building wheel for pyretis (setup.py): started 2026-02-11T13:10:59,719 Destination directory: /tmp/pip-wheel-lr7lhte8 2026-02-11T13:10:59,719 Running command python setup.py bdist_wheel 2026-02-11T13:11:00,270 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'python-tag' in 'bdist_wheel' (setup.cfg), please use the underscore name 'python_tag' instead. 2026-02-11T13:11:00,270 !! 2026-02-11T13:11:00,272 ******************************************************************************** 2026-02-11T13:11:00,272 Usage of dash-separated 'python-tag' will not be supported in future 2026-02-11T13:11:00,273 versions. Please use the underscore name 'python_tag' instead. 2026-02-11T13:11:00,275 Available configuration options are listed in: 2026-02-11T13:11:00,275 https://setuptools.pypa.io/en/latest/userguide/declarative_config.html 2026-02-11T13:11:00,276 By 2026-Mar-03, you need to update your project and remove deprecated calls 2026-02-11T13:11:00,277 or your builds will no longer be supported. 2026-02-11T13:11:00,278 See https://github.com/pypa/setuptools/discussions/5011 for details. 2026-02-11T13:11:00,278 ******************************************************************************** 2026-02-11T13:11:00,279 !! 2026-02-11T13:11:00,280 opt = self._enforce_underscore(opt, section) 2026-02-11T13:11:00,591 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'python-tag' in 'bdist_wheel' (setup.cfg), please use the underscore name 'python_tag' instead. 2026-02-11T13:11:00,592 !! 2026-02-11T13:11:00,593 ******************************************************************************** 2026-02-11T13:11:00,593 Usage of dash-separated 'python-tag' will not be supported in future 2026-02-11T13:11:00,594 versions. Please use the underscore name 'python_tag' instead. 2026-02-11T13:11:00,595 (Affected: pyretis). 2026-02-11T13:11:00,596 Available configuration options are listed in: 2026-02-11T13:11:00,596 https://setuptools.pypa.io/en/latest/userguide/declarative_config.html 2026-02-11T13:11:00,597 By 2026-Mar-03, you need to update your project and remove deprecated calls 2026-02-11T13:11:00,598 or your builds will no longer be supported. 2026-02-11T13:11:00,599 See https://github.com/pypa/setuptools/discussions/5011 for details. 2026-02-11T13:11:00,599 ******************************************************************************** 2026-02-11T13:11:00,601 !! 2026-02-11T13:11:00,601 opt = self._enforce_underscore(opt, section) 2026-02-11T13:11:00,602 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-02-11T13:11:00,602 !! 2026-02-11T13:11:00,603 ******************************************************************************** 2026-02-11T13:11:00,604 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-02-11T13:11:00,605 License :: OSI Approved :: GNU Lesser General Public License v2 or later (LGPLv2+) 2026-02-11T13:11:00,606 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-11T13:11:00,607 ******************************************************************************** 2026-02-11T13:11:00,608 !! 2026-02-11T13:11:00,609 self._finalize_license_expression() 2026-02-11T13:11:00,609 running bdist_wheel 2026-02-11T13:11:00,728 running build 2026-02-11T13:11:00,729 running build_py 2026-02-11T13:11:00,761 creating build/lib/pyretis 2026-02-11T13:11:00,763 copying pyretis/version.py -> build/lib/pyretis 2026-02-11T13:11:00,765 copying pyretis/__init__.py -> build/lib/pyretis 2026-02-11T13:11:00,767 copying pyretis/info.py -> build/lib/pyretis 2026-02-11T13:11:00,769 creating build/lib/test 2026-02-11T13:11:00,770 copying test/__init__.py -> build/lib/test 2026-02-11T13:11:00,772 creating build/lib/devtools 2026-02-11T13:11:00,773 copying devtools/run_linting.py -> build/lib/devtools 2026-02-11T13:11:00,776 copying devtools/update_copyright.py -> build/lib/devtools 2026-02-11T13:11:00,778 creating build/lib/pyretis/setup 2026-02-11T13:11:00,779 copying pyretis/setup/createforcefield.py -> build/lib/pyretis/setup 2026-02-11T13:11:00,782 copying pyretis/setup/__init__.py -> build/lib/pyretis/setup 2026-02-11T13:11:00,784 copying pyretis/setup/createsimulation.py -> build/lib/pyretis/setup 2026-02-11T13:11:00,786 copying pyretis/setup/createsystem.py -> build/lib/pyretis/setup 2026-02-11T13:11:00,789 copying pyretis/setup/common.py -> build/lib/pyretis/setup 2026-02-11T13:11:00,792 creating build/lib/pyretis/simulation 2026-02-11T13:11:00,793 copying pyretis/simulation/mc_simulation.py -> build/lib/pyretis/simulation 2026-02-11T13:11:00,795 copying pyretis/simulation/md_simulation.py -> build/lib/pyretis/simulation 2026-02-11T13:11:00,797 copying pyretis/simulation/simulation_task.py -> build/lib/pyretis/simulation 2026-02-11T13:11:00,800 copying pyretis/simulation/__init__.py -> build/lib/pyretis/simulation 2026-02-11T13:11:00,802 copying pyretis/simulation/simulation.py -> build/lib/pyretis/simulation 2026-02-11T13:11:00,804 copying pyretis/simulation/path_simulation.py -> build/lib/pyretis/simulation 2026-02-11T13:11:00,807 creating build/lib/pyretis/testing 2026-02-11T13:11:00,808 copying pyretis/testing/helpers.py -> build/lib/pyretis/testing 2026-02-11T13:11:00,810 copying pyretis/testing/__init__.py -> build/lib/pyretis/testing 2026-02-11T13:11:00,812 copying pyretis/testing/compare.py -> build/lib/pyretis/testing 2026-02-11T13:11:00,814 copying pyretis/testing/systemhelp.py -> build/lib/pyretis/testing 2026-02-11T13:11:00,817 creating build/lib/pyretis/analysis 2026-02-11T13:11:00,818 copying pyretis/analysis/__init__.py -> build/lib/pyretis/analysis 2026-02-11T13:11:00,820 copying pyretis/analysis/flux_analysis.py -> build/lib/pyretis/analysis 2026-02-11T13:11:00,822 copying pyretis/analysis/path_analysis.py -> build/lib/pyretis/analysis 2026-02-11T13:11:00,825 copying pyretis/analysis/energy_analysis.py -> build/lib/pyretis/analysis 2026-02-11T13:11:00,827 copying pyretis/analysis/order_analysis.py -> build/lib/pyretis/analysis 2026-02-11T13:11:00,829 copying pyretis/analysis/analysis.py -> build/lib/pyretis/analysis 2026-02-11T13:11:00,831 copying pyretis/analysis/histogram.py -> build/lib/pyretis/analysis 2026-02-11T13:11:00,834 creating build/lib/pyretis/core 2026-02-11T13:11:00,835 copying pyretis/core/retis.py -> build/lib/pyretis/core 2026-02-11T13:11:00,838 copying pyretis/core/__init__.py -> build/lib/pyretis/core 2026-02-11T13:11:00,841 copying pyretis/core/system.py -> build/lib/pyretis/core 2026-02-11T13:11:00,843 copying pyretis/core/properties.py -> build/lib/pyretis/core 2026-02-11T13:11:00,846 copying pyretis/core/common.py -> build/lib/pyretis/core 2026-02-11T13:11:00,848 copying pyretis/core/tis.py -> build/lib/pyretis/core 2026-02-11T13:11:00,852 copying pyretis/core/random_gen.py -> build/lib/pyretis/core 2026-02-11T13:11:00,854 copying pyretis/core/particlefunctions.py -> build/lib/pyretis/core 2026-02-11T13:11:00,857 copying pyretis/core/pathensemble.py -> build/lib/pyretis/core 2026-02-11T13:11:00,859 copying pyretis/core/particles.py -> build/lib/pyretis/core 2026-02-11T13:11:00,862 copying pyretis/core/path.py -> build/lib/pyretis/core 2026-02-11T13:11:00,865 copying pyretis/core/units.py -> build/lib/pyretis/core 2026-02-11T13:11:00,868 copying pyretis/core/box.py -> build/lib/pyretis/core 2026-02-11T13:11:00,871 copying pyretis/core/montecarlo.py -> build/lib/pyretis/core 2026-02-11T13:11:00,874 creating build/lib/pyretis/bin 2026-02-11T13:11:00,875 copying pyretis/bin/pyvisa.py -> build/lib/pyretis/bin 2026-02-11T13:11:00,877 copying pyretis/bin/pyretisanalyse.py -> build/lib/pyretis/bin 2026-02-11T13:11:00,879 copying pyretis/bin/pyretisrun.py -> build/lib/pyretis/bin 2026-02-11T13:11:00,882 creating build/lib/pyretis/initiation 2026-02-11T13:11:00,883 copying pyretis/initiation/__init__.py -> build/lib/pyretis/initiation 2026-02-11T13:11:00,886 copying pyretis/initiation/initiate_restart.py -> build/lib/pyretis/initiation 2026-02-11T13:11:00,888 copying pyretis/initiation/initiate_load.py -> build/lib/pyretis/initiation 2026-02-11T13:11:00,891 copying pyretis/initiation/initiate_kick.py -> build/lib/pyretis/initiation 2026-02-11T13:11:00,894 creating build/lib/pyretis/engines 2026-02-11T13:11:00,895 copying pyretis/engines/external.py -> build/lib/pyretis/engines 2026-02-11T13:11:00,898 copying pyretis/engines/gromacs2.py -> build/lib/pyretis/engines 2026-02-11T13:11:00,901 copying pyretis/engines/__init__.py -> build/lib/pyretis/engines 2026-02-11T13:11:00,903 copying pyretis/engines/engine.py -> build/lib/pyretis/engines 2026-02-11T13:11:00,906 copying pyretis/engines/gromacs.py -> build/lib/pyretis/engines 2026-02-11T13:11:00,908 copying pyretis/engines/lammps.py -> build/lib/pyretis/engines 2026-02-11T13:11:00,911 copying pyretis/engines/openmm.py -> build/lib/pyretis/engines 2026-02-11T13:11:00,914 copying pyretis/engines/internal.py -> build/lib/pyretis/engines 2026-02-11T13:11:00,917 copying pyretis/engines/cp2k.py -> build/lib/pyretis/engines 2026-02-11T13:11:00,920 creating build/lib/pyretis/tools 2026-02-11T13:11:00,921 copying pyretis/tools/__init__.py -> build/lib/pyretis/tools 2026-02-11T13:11:00,924 copying pyretis/tools/recalculate_order.py -> build/lib/pyretis/tools 2026-02-11T13:11:00,927 copying pyretis/tools/lattice.py -> build/lib/pyretis/tools 2026-02-11T13:11:00,930 creating build/lib/pyretis/pyvisa 2026-02-11T13:11:00,931 copying pyretis/pyvisa/__init__.py -> build/lib/pyretis/pyvisa 2026-02-11T13:11:00,934 copying pyretis/pyvisa/plotting.py -> build/lib/pyretis/pyvisa 2026-02-11T13:11:00,937 copying pyretis/pyvisa/resources_rc.py -> build/lib/pyretis/pyvisa 2026-02-11T13:11:00,958 copying pyretis/pyvisa/common.py -> build/lib/pyretis/pyvisa 2026-02-11T13:11:00,961 copying pyretis/pyvisa/info.py -> build/lib/pyretis/pyvisa 2026-02-11T13:11:00,963 copying pyretis/pyvisa/statistical_methods.py -> build/lib/pyretis/pyvisa 2026-02-11T13:11:00,965 copying pyretis/pyvisa/orderparam_density.py -> build/lib/pyretis/pyvisa 2026-02-11T13:11:00,968 copying pyretis/pyvisa/visualize.py -> build/lib/pyretis/pyvisa 2026-02-11T13:11:00,973 creating build/lib/pyretis/orderparameter 2026-02-11T13:11:00,974 copying pyretis/orderparameter/__init__.py -> build/lib/pyretis/orderparameter 2026-02-11T13:11:00,976 copying pyretis/orderparameter/orderangle.py -> build/lib/pyretis/orderparameter 2026-02-11T13:11:00,978 copying pyretis/orderparameter/orderdihedral.py -> build/lib/pyretis/orderparameter 2026-02-11T13:11:00,981 copying pyretis/orderparameter/orderparameter.py -> build/lib/pyretis/orderparameter 2026-02-11T13:11:00,984 creating build/lib/pyretis/forcefield 2026-02-11T13:11:00,986 copying pyretis/forcefield/potential.py -> build/lib/pyretis/forcefield 2026-02-11T13:11:00,988 copying pyretis/forcefield/forcefield.py -> build/lib/pyretis/forcefield 2026-02-11T13:11:00,991 copying pyretis/forcefield/__init__.py -> build/lib/pyretis/forcefield 2026-02-11T13:11:00,993 copying pyretis/forcefield/factory.py -> build/lib/pyretis/forcefield 2026-02-11T13:11:00,996 creating build/lib/pyretis/inout 2026-02-11T13:11:00,997 copying pyretis/inout/__init__.py -> build/lib/pyretis/inout 2026-02-11T13:11:01,000 copying pyretis/inout/restart.py -> build/lib/pyretis/inout 2026-02-11T13:11:01,002 copying pyretis/inout/common.py -> build/lib/pyretis/inout 2026-02-11T13:11:01,005 copying pyretis/inout/screen.py -> build/lib/pyretis/inout 2026-02-11T13:11:01,007 copying pyretis/inout/simulationio.py -> build/lib/pyretis/inout 2026-02-11T13:11:01,010 copying pyretis/inout/archive.py -> build/lib/pyretis/inout 2026-02-11T13:11:01,012 copying pyretis/inout/settings.py -> build/lib/pyretis/inout 2026-02-11T13:11:01,016 copying pyretis/inout/fileio.py -> build/lib/pyretis/inout 2026-02-11T13:11:01,018 copying pyretis/inout/checker.py -> build/lib/pyretis/inout 2026-02-11T13:11:01,021 creating build/lib/pyretis/forcefield/potentials 2026-02-11T13:11:01,022 copying pyretis/forcefield/potentials/__init__.py -> build/lib/pyretis/forcefield/potentials 2026-02-11T13:11:01,025 copying pyretis/forcefield/potentials/potentials.py -> build/lib/pyretis/forcefield/potentials 2026-02-11T13:11:01,028 creating build/lib/pyretis/forcefield/potentials/pairpotentials 2026-02-11T13:11:01,029 copying pyretis/forcefield/potentials/pairpotentials/__init__.py -> build/lib/pyretis/forcefield/potentials/pairpotentials 2026-02-11T13:11:01,031 copying pyretis/forcefield/potentials/pairpotentials/pairpotential.py -> build/lib/pyretis/forcefield/potentials/pairpotentials 2026-02-11T13:11:01,034 copying pyretis/forcefield/potentials/pairpotentials/lennardjones.py -> build/lib/pyretis/forcefield/potentials/pairpotentials 2026-02-11T13:11:01,037 copying pyretis/forcefield/potentials/pairpotentials/wca.py -> build/lib/pyretis/forcefield/potentials/pairpotentials 2026-02-11T13:11:01,040 creating build/lib/pyretis/inout/analysisio 2026-02-11T13:11:01,041 copying pyretis/inout/analysisio/__init__.py -> build/lib/pyretis/inout/analysisio 2026-02-11T13:11:01,043 copying pyretis/inout/analysisio/analysisio.py -> build/lib/pyretis/inout/analysisio 2026-02-11T13:11:01,047 creating build/lib/pyretis/inout/plotting 2026-02-11T13:11:01,048 copying pyretis/inout/plotting/__init__.py -> build/lib/pyretis/inout/plotting 2026-02-11T13:11:01,050 copying pyretis/inout/plotting/mpl_plotting.py -> build/lib/pyretis/inout/plotting 2026-02-11T13:11:01,054 copying pyretis/inout/plotting/plotting.py -> build/lib/pyretis/inout/plotting 2026-02-11T13:11:01,056 copying pyretis/inout/plotting/txt_plotting.py -> build/lib/pyretis/inout/plotting 2026-02-11T13:11:01,059 creating build/lib/pyretis/inout/formats 2026-02-11T13:11:01,060 copying pyretis/inout/formats/snapshot.py -> build/lib/pyretis/inout/formats 2026-02-11T13:11:01,063 copying pyretis/inout/formats/formatter.py -> build/lib/pyretis/inout/formats 2026-02-11T13:11:01,066 copying pyretis/inout/formats/__init__.py -> build/lib/pyretis/inout/formats 2026-02-11T13:11:01,068 copying pyretis/inout/formats/cross.py -> build/lib/pyretis/inout/formats 2026-02-11T13:11:01,070 copying pyretis/inout/formats/order.py -> build/lib/pyretis/inout/formats 2026-02-11T13:11:01,072 copying pyretis/inout/formats/txt_table.py -> build/lib/pyretis/inout/formats 2026-02-11T13:11:01,075 copying pyretis/inout/formats/gromacs.py -> build/lib/pyretis/inout/formats 2026-02-11T13:11:01,078 copying pyretis/inout/formats/energy.py -> build/lib/pyretis/inout/formats 2026-02-11T13:11:01,081 copying pyretis/inout/formats/pathensemble.py -> build/lib/pyretis/inout/formats 2026-02-11T13:11:01,083 copying pyretis/inout/formats/xyz.py -> build/lib/pyretis/inout/formats 2026-02-11T13:11:01,086 copying pyretis/inout/formats/path.py -> build/lib/pyretis/inout/formats 2026-02-11T13:11:01,089 copying pyretis/inout/formats/cp2k.py -> build/lib/pyretis/inout/formats 2026-02-11T13:11:01,092 creating build/lib/pyretis/inout/report 2026-02-11T13:11:01,093 copying pyretis/inout/report/report_path.py -> build/lib/pyretis/inout/report 2026-02-11T13:11:01,097 copying pyretis/inout/report/__init__.py -> build/lib/pyretis/inout/report 2026-02-11T13:11:01,099 copying pyretis/inout/report/report_md.py -> build/lib/pyretis/inout/report 2026-02-11T13:11:01,102 copying pyretis/inout/report/report.py -> build/lib/pyretis/inout/report 2026-02-11T13:11:01,104 copying pyretis/inout/report/markup.py -> build/lib/pyretis/inout/report 2026-02-11T13:11:01,108 creating build/lib/docs/ext 2026-02-11T13:11:01,110 copying docs/ext/pyretis_collapse_block.py -> build/lib/docs/ext 2026-02-11T13:11:01,112 copying docs/ext/pyretis_highlight.py -> build/lib/docs/ext 2026-02-11T13:11:01,114 copying docs/ext/pyretis_translator.py -> build/lib/docs/ext 2026-02-11T13:11:01,116 copying docs/ext/pyretisstyle.py -> build/lib/docs/ext 2026-02-11T13:11:01,118 copying docs/ext/pyretis_input_example.py -> build/lib/docs/ext 2026-02-11T13:11:01,120 copying docs/ext/pyretis_keyword.py -> build/lib/docs/ext 2026-02-11T13:11:01,122 creating build/lib/docs/_static/orderparameter-examples 2026-02-11T13:11:01,124 copying docs/_static/orderparameter-examples/orderparameter2.py -> build/lib/docs/_static/orderparameter-examples 2026-02-11T13:11:01,126 copying docs/_static/orderparameter-examples/orderparameter1.py -> build/lib/docs/_static/orderparameter-examples 2026-02-11T13:11:01,128 creating build/lib/docs/_static/api 2026-02-11T13:11:01,129 copying docs/_static/api/box_example_create.py -> build/lib/docs/_static/api 2026-02-11T13:11:01,131 copying docs/_static/api/lattice_example.py -> build/lib/docs/_static/api 2026-02-11T13:11:01,133 copying docs/_static/api/box_example.py -> build/lib/docs/_static/api 2026-02-11T13:11:01,135 creating build/lib/docs/_static/engine-examples 2026-02-11T13:11:01,136 copying docs/_static/engine-examples/openmm_sim.py -> build/lib/docs/_static/engine-examples 2026-02-11T13:11:01,138 copying docs/_static/engine-examples/leapfrog.py -> build/lib/docs/_static/engine-examples 2026-02-11T13:11:01,139 copying docs/_static/engine-examples/newexternal.py -> build/lib/docs/_static/engine-examples 2026-02-11T13:11:01,143 creating build/lib/docs/_static/examples 2026-02-11T13:11:01,143 copying docs/_static/examples/examples_mc.py -> build/lib/docs/_static/examples 2026-02-11T13:11:01,146 copying docs/_static/examples/orderintro.py -> build/lib/docs/_static/examples 2026-02-11T13:11:01,148 copying docs/_static/examples/orderintro2.py -> build/lib/docs/_static/examples 2026-02-11T13:11:01,149 copying docs/_static/examples/md.py -> build/lib/docs/_static/examples 2026-02-11T13:11:01,151 copying docs/_static/examples/harmonic1d.py -> build/lib/docs/_static/examples 2026-02-11T13:11:01,153 copying docs/_static/examples/pathintro.py -> build/lib/docs/_static/examples 2026-02-11T13:11:01,155 copying docs/_static/examples/simulationintro.py -> build/lib/docs/_static/examples 2026-02-11T13:11:01,157 creating build/lib/docs/_static/exercises 2026-02-11T13:11:01,158 copying docs/_static/exercises/retis.py -> build/lib/docs/_static/exercises 2026-02-11T13:11:01,160 copying docs/_static/exercises/retis_movie.py -> build/lib/docs/_static/exercises 2026-02-11T13:11:01,163 creating build/lib/docs/_static/examples/gromacs-hydrate 2026-02-11T13:11:01,164 copying docs/_static/examples/gromacs-hydrate/orderp.py -> build/lib/docs/_static/examples/gromacs-hydrate 2026-02-11T13:11:01,167 creating build/lib/docs/_static/examples/pyvisa-analysis 2026-02-11T13:11:01,168 copying docs/_static/examples/pyvisa-analysis/orderp.py -> build/lib/docs/_static/examples/pyvisa-analysis 2026-02-11T13:11:01,170 creating build/lib/docs/_static/examples/retis2d-wca 2026-02-11T13:11:01,171 copying docs/_static/examples/retis2d-wca/orderp.py -> build/lib/docs/_static/examples/retis2d-wca 2026-02-11T13:11:01,174 creating build/lib/docs/_static/examples/retis2d-hysteresis 2026-02-11T13:11:01,175 copying docs/_static/examples/retis2d-hysteresis/potential.py -> build/lib/docs/_static/examples/retis2d-hysteresis 2026-02-11T13:11:01,177 copying docs/_static/examples/retis2d-hysteresis/order-x.py -> build/lib/docs/_static/examples/retis2d-hysteresis 2026-02-11T13:11:01,179 copying docs/_static/examples/retis2d-hysteresis/order-xy.py -> build/lib/docs/_static/examples/retis2d-hysteresis 2026-02-11T13:11:01,182 creating build/lib/docs/_static/examples/permeability 2026-02-11T13:11:01,183 copying docs/_static/examples/permeability/flat_potential.py -> build/lib/docs/_static/examples/permeability 2026-02-11T13:11:01,185 creating build/lib/docs/_static/examples/pso-example 2026-02-11T13:11:01,186 copying docs/_static/examples/pso-example/psoengine.py -> build/lib/docs/_static/examples/pso-example 2026-02-11T13:11:01,188 copying docs/_static/examples/pso-example/pso_run.py -> build/lib/docs/_static/examples/pso-example 2026-02-11T13:11:01,190 copying docs/_static/examples/pso-example/ackley.py -> build/lib/docs/_static/examples/pso-example 2026-02-11T13:11:01,192 creating build/lib/docs/_static/examples/extending-example/potentialfb 2026-02-11T13:11:01,194 copying docs/_static/examples/extending-example/potentialfb/ljpotentialf.py -> build/lib/docs/_static/examples/extending-example/potentialfb 2026-02-11T13:11:01,196 copying docs/_static/examples/extending-example/potentialfb/setup.py -> build/lib/docs/_static/examples/extending-example/potentialfb 2026-02-11T13:11:01,198 copying docs/_static/examples/extending-example/potentialfb/ljpotentialc.py -> build/lib/docs/_static/examples/extending-example/potentialfb 2026-02-11T13:11:01,200 copying docs/_static/examples/extending-example/potentialfb/md_forward_backward_ext.py -> build/lib/docs/_static/examples/extending-example/potentialfb 2026-02-11T13:11:01,203 creating build/lib/docs/_static/examples/extending-example/potential 2026-02-11T13:11:01,204 copying docs/_static/examples/extending-example/potential/ljpotentialfp.py -> build/lib/docs/_static/examples/extending-example/potential 2026-02-11T13:11:01,206 copying docs/_static/examples/extending-example/potential/setup.py -> build/lib/docs/_static/examples/extending-example/potential 2026-02-11T13:11:01,208 copying docs/_static/examples/extending-example/potential/ljpotentialc.py -> build/lib/docs/_static/examples/extending-example/potential 2026-02-11T13:11:01,210 creating build/lib/docs/_static/examples/extending-example/engine 2026-02-11T13:11:01,211 copying docs/_static/examples/extending-example/engine/setup.py -> build/lib/docs/_static/examples/extending-example/engine 2026-02-11T13:11:01,213 copying docs/_static/examples/extending-example/engine/vvintegratorf.py -> build/lib/docs/_static/examples/extending-example/engine 2026-02-11T13:11:01,215 copying docs/_static/examples/extending-example/engine/vvintegratorc.py -> build/lib/docs/_static/examples/extending-example/engine 2026-02-11T13:11:01,217 creating build/lib/test/simulation 2026-02-11T13:11:01,218 copying test/simulation/__init__.py -> build/lib/test/simulation 2026-02-11T13:11:01,220 copying test/simulation/test_umbrellawindow.py -> build/lib/test/simulation 2026-02-11T13:11:01,222 copying test/simulation/test_pathsimulation.py -> build/lib/test/simulation 2026-02-11T13:11:01,224 copying test/simulation/test_simulation_task.py -> build/lib/test/simulation 2026-02-11T13:11:01,227 copying test/simulation/test_mdsimulation.py -> build/lib/test/simulation 2026-02-11T13:11:01,229 copying test/simulation/help.py -> build/lib/test/simulation 2026-02-11T13:11:01,231 copying test/simulation/test_simulation.py -> build/lib/test/simulation 2026-02-11T13:11:01,234 creating build/lib/test/testing 2026-02-11T13:11:01,235 copying test/testing/test_compare.py -> build/lib/test/testing 2026-02-11T13:11:01,237 copying test/testing/test_helpers.py -> build/lib/test/testing 2026-02-11T13:11:01,239 copying test/testing/__init__.py -> build/lib/test/testing 2026-02-11T13:11:01,241 creating build/lib/test/analysis 2026-02-11T13:11:01,242 copying test/analysis/__init__.py -> build/lib/test/analysis 2026-02-11T13:11:01,244 copying test/analysis/test_analysis.py -> build/lib/test/analysis 2026-02-11T13:11:01,246 copying test/analysis/test_energy_analysis.py -> build/lib/test/analysis 2026-02-11T13:11:01,248 copying test/analysis/test_flux_analysis.py -> build/lib/test/analysis 2026-02-11T13:11:01,250 copying test/analysis/help.py -> build/lib/test/analysis 2026-02-11T13:11:01,252 copying test/analysis/test_orderp_analysis.py -> build/lib/test/analysis 2026-02-11T13:11:01,254 copying test/analysis/test_path_analysis.py -> build/lib/test/analysis 2026-02-11T13:11:01,257 creating build/lib/test/core 2026-02-11T13:11:01,258 copying test/core/test_path.py -> build/lib/test/core 2026-02-11T13:11:01,261 copying test/core/test_system.py -> build/lib/test/core 2026-02-11T13:11:01,263 copying test/core/test_common.py -> build/lib/test/core 2026-02-11T13:11:01,266 copying test/core/test_pathensemble.py -> build/lib/test/core 2026-02-11T13:11:01,269 copying test/core/__init__.py -> build/lib/test/core 2026-02-11T13:11:01,270 copying test/core/fooengine.py -> build/lib/test/core 2026-02-11T13:11:01,272 copying test/core/test_particlefunctions.py -> build/lib/test/core 2026-02-11T13:11:01,274 copying test/core/test_montecarlo.py -> build/lib/test/core 2026-02-11T13:11:01,276 copying test/core/test_retis.py -> build/lib/test/core 2026-02-11T13:11:01,279 copying test/core/test_units.py -> build/lib/test/core 2026-02-11T13:11:01,282 copying test/core/test_random.py -> build/lib/test/core 2026-02-11T13:11:01,284 copying test/core/test_particles.py -> build/lib/test/core 2026-02-11T13:11:01,286 copying test/core/help.py -> build/lib/test/core 2026-02-11T13:11:01,288 copying test/core/test_box.py -> build/lib/test/core 2026-02-11T13:11:01,291 copying test/core/test_tis.py -> build/lib/test/core 2026-02-11T13:11:01,295 creating build/lib/test/bin 2026-02-11T13:11:01,295 copying test/bin/__init__.py -> build/lib/test/bin 2026-02-11T13:11:01,297 copying test/bin/test_pyretisrun.py -> build/lib/test/bin 2026-02-11T13:11:01,299 copying test/bin/help.py -> build/lib/test/bin 2026-02-11T13:11:01,300 copying test/bin/test_pyvisa.py -> build/lib/test/bin 2026-02-11T13:11:01,302 copying test/bin/test_pyretisanalyse.py -> build/lib/test/bin 2026-02-11T13:11:01,305 creating build/lib/test/initiation 2026-02-11T13:11:01,306 copying test/initiation/__init__.py -> build/lib/test/initiation 2026-02-11T13:11:01,307 copying test/initiation/test_initiate_kick.py -> build/lib/test/initiation 2026-02-11T13:11:01,310 copying test/initiation/test_initiate_restart.py -> build/lib/test/initiation 2026-02-11T13:11:01,313 copying test/initiation/test_initiation.py -> build/lib/test/initiation 2026-02-11T13:11:01,314 copying test/initiation/help.py -> build/lib/test/initiation 2026-02-11T13:11:01,317 copying test/initiation/test_initiate_load.py -> build/lib/test/initiation 2026-02-11T13:11:01,321 creating build/lib/test/engines 2026-02-11T13:11:01,321 copying test/engines/aprogram.py -> build/lib/test/engines 2026-02-11T13:11:01,323 copying test/engines/__init__.py -> build/lib/test/engines 2026-02-11T13:11:01,325 copying test/engines/mockgmx.py -> build/lib/test/engines 2026-02-11T13:11:01,327 copying test/engines/test_gromacs2.py -> build/lib/test/engines 2026-02-11T13:11:01,329 copying test/engines/mockcp2k.py -> build/lib/test/engines 2026-02-11T13:11:01,331 copying test/engines/test_lammps.py -> build/lib/test/engines 2026-02-11T13:11:01,334 copying test/engines/test_openmm.py -> build/lib/test/engines 2026-02-11T13:11:01,336 copying test/engines/test_cp2k.py -> build/lib/test/engines 2026-02-11T13:11:01,339 copying test/engines/test_gromacs.py -> build/lib/test/engines 2026-02-11T13:11:01,341 copying test/engines/mockmdrun.py -> build/lib/test/engines 2026-02-11T13:11:01,344 copying test/engines/mockmdrun2.py -> build/lib/test/engines 2026-02-11T13:11:01,346 copying test/engines/test_engines.py -> build/lib/test/engines 2026-02-11T13:11:01,349 copying test/engines/mocklammps.py -> build/lib/test/engines 2026-02-11T13:11:01,351 copying test/engines/test_internalengine.py -> build/lib/test/engines 2026-02-11T13:11:01,353 copying test/engines/test_externalengine.py -> build/lib/test/engines 2026-02-11T13:11:01,356 creating build/lib/test/tools 2026-02-11T13:11:01,357 copying test/tools/__init__.py -> build/lib/test/tools 2026-02-11T13:11:01,358 copying test/tools/test_lattice.py -> build/lib/test/tools 2026-02-11T13:11:01,360 copying test/tools/test_recalculate.py -> build/lib/test/tools 2026-02-11T13:11:01,363 creating build/lib/test/pyvisa 2026-02-11T13:11:01,364 copying test/pyvisa/test_common.py -> build/lib/test/pyvisa 2026-02-11T13:11:01,366 copying test/pyvisa/__init__.py -> build/lib/test/pyvisa 2026-02-11T13:11:01,368 copying test/pyvisa/test_plotting.py -> build/lib/test/pyvisa 2026-02-11T13:11:01,370 copying test/pyvisa/test_orderparam_density.py -> build/lib/test/pyvisa 2026-02-11T13:11:01,372 copying test/pyvisa/test_statistical_methods.py -> build/lib/test/pyvisa 2026-02-11T13:11:01,375 creating build/lib/test/orderparameter 2026-02-11T13:11:01,376 copying test/orderparameter/__init__.py -> build/lib/test/orderparameter 2026-02-11T13:11:01,377 copying test/orderparameter/test_orderparameter.py -> build/lib/test/orderparameter 2026-02-11T13:11:01,381 creating build/lib/test/forcefield 2026-02-11T13:11:01,382 copying test/forcefield/test_wcapair.py -> build/lib/test/forcefield 2026-02-11T13:11:01,384 copying test/forcefield/__init__.py -> build/lib/test/forcefield 2026-02-11T13:11:01,385 copying test/forcefield/test_pairpotentials.py -> build/lib/test/forcefield 2026-02-11T13:11:01,387 copying test/forcefield/test_forcefield.py -> build/lib/test/forcefield 2026-02-11T13:11:01,390 copying test/forcefield/test_potentials.py -> build/lib/test/forcefield 2026-02-11T13:11:01,392 copying test/forcefield/test_potential.py -> build/lib/test/forcefield 2026-02-11T13:11:01,393 copying test/forcefield/test_lennardjones.py -> build/lib/test/forcefield 2026-02-11T13:11:01,396 creating build/lib/test/inout 2026-02-11T13:11:01,397 copying test/inout/test_gromacsio.py -> build/lib/test/inout 2026-02-11T13:11:01,401 copying test/inout/test_formatters_table.py -> build/lib/test/inout 2026-02-11T13:11:01,405 copying test/inout/test_traj_formatters.py -> build/lib/test/inout 2026-02-11T13:11:01,407 copying test/inout/test_settings.py -> build/lib/test/inout 2026-02-11T13:11:01,410 copying test/inout/test_common.py -> build/lib/test/inout 2026-02-11T13:11:01,412 copying test/inout/__init__.py -> build/lib/test/inout 2026-02-11T13:11:01,413 copying test/inout/fooorderparameter.py -> build/lib/test/inout 2026-02-11T13:11:01,415 copying test/inout/fooengine.py -> build/lib/test/inout 2026-02-11T13:11:01,417 copying test/inout/test_cp2kio.py -> build/lib/test/inout 2026-02-11T13:11:01,419 copying test/inout/test_fileio.py -> build/lib/test/inout 2026-02-11T13:11:01,422 copying test/inout/test_screen.py -> build/lib/test/inout 2026-02-11T13:11:01,423 copying test/inout/test_createsystem.py -> build/lib/test/inout 2026-02-11T13:11:01,426 copying test/inout/test_xyzio.py -> build/lib/test/inout 2026-02-11T13:11:01,428 copying test/inout/test_checker.py -> build/lib/test/inout 2026-02-11T13:11:01,430 copying test/inout/test_restart.py -> build/lib/test/inout 2026-02-11T13:11:01,432 copying test/inout/test_setup_common.py -> build/lib/test/inout 2026-02-11T13:11:01,434 copying test/inout/test_createsimulation.py -> build/lib/test/inout 2026-02-11T13:11:01,437 copying test/inout/test_formatters.py -> build/lib/test/inout 2026-02-11T13:11:01,439 copying test/inout/help.py -> build/lib/test/inout 2026-02-11T13:11:01,441 copying test/inout/test_simulationio.py -> build/lib/test/inout 2026-02-11T13:11:01,444 copying test/inout/test_archive.py -> build/lib/test/inout 2026-02-11T13:11:01,446 copying test/inout/foopotential.py -> build/lib/test/inout 2026-02-11T13:11:01,448 copying test/inout/test_reports.py -> build/lib/test/inout 2026-02-11T13:11:01,450 creating build/lib/test/initiation/gromacs 2026-02-11T13:11:01,451 copying test/initiation/gromacs/mockgmx.py -> build/lib/test/initiation/gromacs 2026-02-11T13:11:01,453 copying test/initiation/gromacs/orderp.py -> build/lib/test/initiation/gromacs 2026-02-11T13:11:01,455 copying test/initiation/gromacs/mockmdrun.py -> build/lib/test/initiation/gromacs 2026-02-11T13:11:01,458 creating build/lib/test/initiation/cp2k 2026-02-11T13:11:01,459 copying test/initiation/cp2k/mockcp2k.py -> build/lib/test/initiation/cp2k 2026-02-11T13:11:01,461 creating build/lib/test/engines/test_helpers 2026-02-11T13:11:01,462 copying test/engines/test_helpers/test_helpers.py -> build/lib/test/engines/test_helpers 2026-02-11T13:11:01,464 copying test/engines/test_helpers/__init__.py -> build/lib/test/engines/test_helpers 2026-02-11T13:11:01,466 creating build/lib/devtools/docs 2026-02-11T13:11:01,467 copying devtools/docs/mpl_object.py -> build/lib/devtools/docs 2026-02-11T13:11:01,470 copying devtools/docs/make_table.py -> build/lib/devtools/docs 2026-02-11T13:11:01,472 copying devtools/docs/check_api_docs.py -> build/lib/devtools/docs 2026-02-11T13:11:01,474 creating build/lib/examples/umbrella_sampling 2026-02-11T13:11:01,475 copying examples/umbrella_sampling/umbrella_sampling_mc.py -> build/lib/examples/umbrella_sampling 2026-02-11T13:11:01,478 copying examples/umbrella_sampling/umbrella_sampling_mc_movie.py -> build/lib/examples/umbrella_sampling 2026-02-11T13:11:01,481 creating build/lib/examples/umbrella_sampling/fancy_movie 2026-02-11T13:11:01,482 copying examples/umbrella_sampling/fancy_movie/umbrella_sampling_mc_fancy_movie.py -> build/lib/examples/umbrella_sampling/fancy_movie 2026-02-11T13:11:01,485 creating build/lib/examples/extending/order-parameter 2026-02-11T13:11:01,487 copying examples/extending/order-parameter/orderparameter1.py -> build/lib/examples/extending/order-parameter 2026-02-11T13:11:01,489 creating build/lib/examples/extending/integrator-langevin 2026-02-11T13:11:01,490 copying examples/extending/integrator-langevin/vvintegratorf.py -> build/lib/examples/extending/integrator-langevin 2026-02-11T13:11:01,493 copying examples/extending/integrator-langevin/test_random.py -> build/lib/examples/extending/integrator-langevin 2026-02-11T13:11:01,495 creating build/lib/examples/extending/lennard-jones 2026-02-11T13:11:01,496 copying examples/extending/lennard-jones/plot_results.py -> build/lib/examples/extending/lennard-jones 2026-02-11T13:11:01,498 copying examples/extending/lennard-jones/time_lj_numba.py -> build/lib/examples/extending/lennard-jones 2026-02-11T13:11:01,500 copying examples/extending/lennard-jones/time_lj_python.py -> build/lib/examples/extending/lennard-jones 2026-02-11T13:11:01,502 copying examples/extending/lennard-jones/time_lj_numpy.py -> build/lib/examples/extending/lennard-jones 2026-02-11T13:11:01,504 creating build/lib/examples/extending/integrator-vv/c 2026-02-11T13:11:01,506 copying examples/extending/integrator-vv/c/setup.py -> build/lib/examples/extending/integrator-vv/c 2026-02-11T13:11:01,510 copying examples/extending/integrator-vv/c/test_vvintegrator.py -> build/lib/examples/extending/integrator-vv/c 2026-02-11T13:11:01,513 copying examples/extending/integrator-vv/c/md_nve.py -> build/lib/examples/extending/integrator-vv/c 2026-02-11T13:11:01,515 copying examples/extending/integrator-vv/c/vvintegratorc.py -> build/lib/examples/extending/integrator-vv/c 2026-02-11T13:11:01,518 creating build/lib/examples/extending/integrator-vv/fortran 2026-02-11T13:11:01,520 copying examples/extending/integrator-vv/fortran/vvintegratorf.py -> build/lib/examples/extending/integrator-vv/fortran 2026-02-11T13:11:01,523 copying examples/extending/integrator-vv/fortran/test_vvintegrator.py -> build/lib/examples/extending/integrator-vv/fortran 2026-02-11T13:11:01,526 copying examples/extending/integrator-vv/fortran/md_nve.py -> build/lib/examples/extending/integrator-vv/fortran 2026-02-11T13:11:01,529 creating build/lib/examples/extending/lennard-jones/fortran-pointer 2026-02-11T13:11:01,530 copying examples/extending/lennard-jones/fortran-pointer/time_ljforces.py -> build/lib/examples/extending/lennard-jones/fortran-pointer 2026-02-11T13:11:01,533 copying examples/extending/lennard-jones/fortran-pointer/test_ljforces.py -> build/lib/examples/extending/lennard-jones/fortran-pointer 2026-02-11T13:11:01,536 copying examples/extending/lennard-jones/fortran-pointer/ljpotentialfp.py -> build/lib/examples/extending/lennard-jones/fortran-pointer 2026-02-11T13:11:01,539 copying examples/extending/lennard-jones/fortran-pointer/md_nve.py -> build/lib/examples/extending/lennard-jones/fortran-pointer 2026-02-11T13:11:01,542 creating build/lib/examples/extending/lennard-jones/omp-potential 2026-02-11T13:11:01,543 copying examples/extending/lennard-jones/omp-potential/plot_results.py -> build/lib/examples/extending/lennard-jones/omp-potential 2026-02-11T13:11:01,546 copying examples/extending/lennard-jones/omp-potential/time_ljforces.py -> build/lib/examples/extending/lennard-jones/omp-potential 2026-02-11T13:11:01,549 copying examples/extending/lennard-jones/omp-potential/test_ljforces.py -> build/lib/examples/extending/lennard-jones/omp-potential 2026-02-11T13:11:01,552 copying examples/extending/lennard-jones/omp-potential/ljpotentialfp.py -> build/lib/examples/extending/lennard-jones/omp-potential 2026-02-11T13:11:01,556 creating build/lib/examples/extending/lennard-jones/c 2026-02-11T13:11:01,557 copying examples/extending/lennard-jones/c/time_ljforces.py -> build/lib/examples/extending/lennard-jones/c 2026-02-11T13:11:01,560 copying examples/extending/lennard-jones/c/test_ljforces.py -> build/lib/examples/extending/lennard-jones/c 2026-02-11T13:11:01,562 copying examples/extending/lennard-jones/c/setup.py -> build/lib/examples/extending/lennard-jones/c 2026-02-11T13:11:01,565 copying examples/extending/lennard-jones/c/ljpotentialc.py -> build/lib/examples/extending/lennard-jones/c 2026-02-11T13:11:01,567 copying examples/extending/lennard-jones/c/md_nve.py -> build/lib/examples/extending/lennard-jones/c 2026-02-11T13:11:01,570 creating build/lib/examples/extending/lennard-jones/fortran 2026-02-11T13:11:01,572 copying examples/extending/lennard-jones/fortran/ljpotentialf.py -> build/lib/examples/extending/lennard-jones/fortran 2026-02-11T13:11:01,575 copying examples/extending/lennard-jones/fortran/time_ljforces.py -> build/lib/examples/extending/lennard-jones/fortran 2026-02-11T13:11:01,578 copying examples/extending/lennard-jones/fortran/test_ljforces.py -> build/lib/examples/extending/lennard-jones/fortran 2026-02-11T13:11:01,581 copying examples/extending/lennard-jones/fortran/md_nve.py -> build/lib/examples/extending/lennard-jones/fortran 2026-02-11T13:11:01,584 creating build/lib/examples/molecular_dynamics/md_wca 2026-02-11T13:11:01,586 copying examples/molecular_dynamics/md_wca/md_movie_2d_wca.py -> build/lib/examples/molecular_dynamics/md_wca 2026-02-11T13:11:01,590 creating build/lib/examples/molecular_dynamics/md_nve 2026-02-11T13:11:01,591 copying examples/molecular_dynamics/md_nve/md_nve_plain.py -> build/lib/examples/molecular_dynamics/md_nve 2026-02-11T13:11:01,594 copying examples/molecular_dynamics/md_nve/md_nve.py -> build/lib/examples/molecular_dynamics/md_nve 2026-02-11T13:11:01,597 creating build/lib/examples/molecular_dynamics/new_integrator 2026-02-11T13:11:01,598 copying examples/molecular_dynamics/new_integrator/myintegrator.py -> build/lib/examples/molecular_dynamics/new_integrator 2026-02-11T13:11:01,600 copying examples/molecular_dynamics/new_integrator/run_pendulum.py -> build/lib/examples/molecular_dynamics/new_integrator 2026-02-11T13:11:01,603 copying examples/molecular_dynamics/new_integrator/doublependulum.py -> build/lib/examples/molecular_dynamics/new_integrator 2026-02-11T13:11:01,606 creating build/lib/examples/molecular_dynamics/md_movie_2d 2026-02-11T13:11:01,607 copying examples/molecular_dynamics/md_movie_2d/md_movie_2d.py -> build/lib/examples/molecular_dynamics/md_movie_2d 2026-02-11T13:11:01,610 creating build/lib/examples/molecular_dynamics/md_nve/real_units 2026-02-11T13:11:01,611 copying examples/molecular_dynamics/md_nve/real_units/compare.py -> build/lib/examples/molecular_dynamics/md_nve/real_units 2026-02-11T13:11:01,614 creating build/lib/examples/molecular_dynamics/md_nve/forward_backward 2026-02-11T13:11:01,615 copying examples/molecular_dynamics/md_nve/forward_backward/md_forward_backward.py -> build/lib/examples/molecular_dynamics/md_nve/forward_backward 2026-02-11T13:11:01,617 creating build/lib/examples/molecular_dynamics/md_nve/from_settings 2026-02-11T13:11:01,618 copying examples/molecular_dynamics/md_nve/from_settings/plot_thermo.py -> build/lib/examples/molecular_dynamics/md_nve/from_settings 2026-02-11T13:11:01,620 copying examples/molecular_dynamics/md_nve/from_settings/plot_bokeh.py -> build/lib/examples/molecular_dynamics/md_nve/from_settings 2026-02-11T13:11:01,623 creating build/lib/examples/molecular_dynamics/md_nve/forward_backward/external 2026-02-11T13:11:01,624 copying examples/molecular_dynamics/md_nve/forward_backward/external/md_forward_backward_ext.py -> build/lib/examples/molecular_dynamics/md_nve/forward_backward/external 2026-02-11T13:11:01,626 creating build/lib/examples/molecular_dynamics/md_nve/forward_backward/external/cpython3 2026-02-11T13:11:01,627 copying examples/molecular_dynamics/md_nve/forward_backward/external/cpython3/setup.py -> build/lib/examples/molecular_dynamics/md_nve/forward_backward/external/cpython3 2026-02-11T13:11:01,629 copying examples/molecular_dynamics/md_nve/forward_backward/external/cpython3/ljpotentialc.py -> build/lib/examples/molecular_dynamics/md_nve/forward_backward/external/cpython3 2026-02-11T13:11:01,632 creating build/lib/examples/molecular_dynamics/md_nve/forward_backward/external/fortran 2026-02-11T13:11:01,633 copying examples/molecular_dynamics/md_nve/forward_backward/external/fortran/ljpotentialf.py -> build/lib/examples/molecular_dynamics/md_nve/forward_backward/external/fortran 2026-02-11T13:11:01,636 creating build/lib/examples/other/particle_swarm 2026-02-11T13:11:01,637 copying examples/other/particle_swarm/psoengine.py -> build/lib/examples/other/particle_swarm 2026-02-11T13:11:01,639 copying examples/other/particle_swarm/pso_run.py -> build/lib/examples/other/particle_swarm 2026-02-11T13:11:01,641 copying examples/other/particle_swarm/ackley.py -> build/lib/examples/other/particle_swarm 2026-02-11T13:11:01,645 creating build/lib/examples/test/test-lammps/test-dump-phasepoint 2026-02-11T13:11:01,646 copying examples/test/test-lammps/test-dump-phasepoint/test_lammps.py -> build/lib/examples/test/test-lammps/test-dump-phasepoint 2026-02-11T13:11:01,649 creating build/lib/examples/test/test-lammps/test-integrate 2026-02-11T13:11:01,650 copying examples/test/test-lammps/test-integrate/plotting.py -> build/lib/examples/test/test-lammps/test-integrate 2026-02-11T13:11:01,652 copying examples/test/test-lammps/test-integrate/test_lammps.py -> build/lib/examples/test/test-lammps/test-integrate 2026-02-11T13:11:01,654 creating build/lib/examples/test/test-lammps/test-propagate 2026-02-11T13:11:01,655 copying examples/test/test-lammps/test-propagate/plotting.py -> build/lib/examples/test/test-lammps/test-propagate 2026-02-11T13:11:01,657 copying examples/test/test-lammps/test-propagate/test_lammps.py -> build/lib/examples/test/test-lammps/test-propagate 2026-02-11T13:11:01,660 creating build/lib/examples/test/test-lammps/lammps_testing 2026-02-11T13:11:01,661 copying examples/test/test-lammps/lammps_testing/plotting.py -> build/lib/examples/test/test-lammps/lammps_testing 2026-02-11T13:11:01,664 creating build/lib/examples/test/test-lammps/test-modify-velocities 2026-02-11T13:11:01,665 copying examples/test/test-lammps/test-modify-velocities/test_lammps.py -> build/lib/examples/test/test-lammps/test-modify-velocities 2026-02-11T13:11:01,667 creating build/lib/examples/test/test-cp2k/test-cp2k 2026-02-11T13:11:01,669 copying examples/test/test-cp2k/test-cp2k/test_cp2k_step.py -> build/lib/examples/test/test-cp2k/test-cp2k 2026-02-11T13:11:01,671 copying examples/test/test-cp2k/test-cp2k/test_cp2k.py -> build/lib/examples/test/test-cp2k/test-cp2k 2026-02-11T13:11:01,674 creating build/lib/examples/test/test-cp2k/test-integrate 2026-02-11T13:11:01,675 copying examples/test/test-cp2k/test-integrate/compare_cp2k_energies.py -> build/lib/examples/test/test-cp2k/test-integrate 2026-02-11T13:11:01,677 copying examples/test/test-cp2k/test-integrate/make_inp.py -> build/lib/examples/test/test-cp2k/test-integrate 2026-02-11T13:11:01,679 copying examples/test/test-cp2k/test-integrate/compare_energies.py -> build/lib/examples/test/test-cp2k/test-integrate 2026-02-11T13:11:01,681 creating build/lib/examples/test/test-cp2k/test-retis-load 2026-02-11T13:11:01,682 copying examples/test/test-cp2k/test-retis-load/compare.py -> build/lib/examples/test/test-cp2k/test-retis-load 2026-02-11T13:11:01,684 creating build/lib/examples/test/test-pyvisa/lib 2026-02-11T13:11:01,686 copying examples/test/test-pyvisa/lib/compare_order.py -> build/lib/examples/test/test-pyvisa/lib 2026-02-11T13:11:01,688 copying examples/test/test-pyvisa/lib/compare_hdf5.py -> build/lib/examples/test/test-pyvisa/lib 2026-02-11T13:11:01,690 creating build/lib/examples/test/test-internal/partial-path 2026-02-11T13:11:01,691 copying examples/test/test-internal/partial-path/compare.py -> build/lib/examples/test/test-internal/partial-path 2026-02-11T13:11:01,693 copying examples/test/test-internal/partial-path/flat-potential.py -> build/lib/examples/test/test-internal/partial-path 2026-02-11T13:11:01,696 creating build/lib/examples/test/test-internal/tis-multiple 2026-02-11T13:11:01,696 copying examples/test/test-internal/tis-multiple/compare.py -> build/lib/examples/test/test-internal/tis-multiple 2026-02-11T13:11:01,699 creating build/lib/examples/test/test-internal/compare-internal-with-lammps 2026-02-11T13:11:01,700 copying examples/test/test-internal/compare-internal-with-lammps/run_md_comparison.py -> build/lib/examples/test/test-internal/compare-internal-with-lammps 2026-02-11T13:11:01,703 creating build/lib/examples/test/test-internal/mdflux-restart 2026-02-11T13:11:01,703 copying examples/test/test-internal/mdflux-restart/compare.py -> build/lib/examples/test/test-internal/mdflux-restart 2026-02-11T13:11:01,706 creating build/lib/examples/test/test-internal/md-restart 2026-02-11T13:11:01,707 copying examples/test/test-internal/md-restart/compare.py -> build/lib/examples/test/test-internal/md-restart 2026-02-11T13:11:01,710 creating build/lib/examples/test/test-internal/retis-ss-wt-wf 2026-02-11T13:11:01,711 copying examples/test/test-internal/retis-ss-wt-wf/compare.py -> build/lib/examples/test/test-internal/retis-ss-wt-wf 2026-02-11T13:11:01,713 creating build/lib/examples/test/test-internal/tis-restart 2026-02-11T13:11:01,714 copying examples/test/test-internal/tis-restart/compare.py -> build/lib/examples/test/test-internal/tis-restart 2026-02-11T13:11:01,717 creating build/lib/examples/test/test-internal/retis 2026-02-11T13:11:01,718 copying examples/test/test-internal/retis/compare.py -> build/lib/examples/test/test-internal/retis 2026-02-11T13:11:01,721 creating build/lib/examples/test/test-gromacs/gmx 2026-02-11T13:11:01,723 copying examples/test/test-gromacs/gmx/copy_last_path.py -> build/lib/examples/test/test-gromacs/gmx 2026-02-11T13:11:01,725 copying examples/test/test-gromacs/gmx/merge_files.py -> build/lib/examples/test/test-gromacs/gmx 2026-02-11T13:11:01,727 copying examples/test/test-gromacs/gmx/gromacs.py -> build/lib/examples/test/test-gromacs/gmx 2026-02-11T13:11:01,729 copying examples/test/test-gromacs/gmx/compare.py -> build/lib/examples/test/test-gromacs/gmx 2026-02-11T13:11:01,731 copying examples/test/test-gromacs/gmx/orderp.py -> build/lib/examples/test/test-gromacs/gmx 2026-02-11T13:11:01,733 copying examples/test/test-gromacs/gmx/copy_restart_files.py -> build/lib/examples/test/test-gromacs/gmx 2026-02-11T13:11:01,735 copying examples/test/test-gromacs/gmx/make_mdp.py -> build/lib/examples/test/test-gromacs/gmx 2026-02-11T13:11:01,737 creating build/lib/examples/test/test-gromacs/test-retis 2026-02-11T13:11:01,738 copying examples/test/test-gromacs/test-retis/compare.py -> build/lib/examples/test/test-gromacs/test-retis 2026-02-11T13:11:01,741 creating build/lib/examples/test/test-gromacs/test-integrate 2026-02-11T13:11:01,742 copying examples/test/test-gromacs/test-integrate/compare_energies.py -> build/lib/examples/test/test-gromacs/test-integrate 2026-02-11T13:11:01,744 creating build/lib/examples/test/test-gromacs/test-repptis 2026-02-11T13:11:01,745 copying examples/test/test-gromacs/test-repptis/compare.py -> build/lib/examples/test/test-gromacs/test-repptis 2026-02-11T13:11:01,748 creating build/lib/examples/test/test-gromacs/test-gromacs 2026-02-11T13:11:01,749 copying examples/test/test-gromacs/test-gromacs/test_gromacs.py -> build/lib/examples/test/test-gromacs/test-gromacs 2026-02-11T13:11:01,752 creating build/lib/examples/test/test-gromacs/test-load/test-load-sparse/load-traj 2026-02-11T13:11:01,755 copying examples/test/test-gromacs/test-load/test-load-sparse/load-traj/orderp.py -> build/lib/examples/test/test-gromacs/test-load/test-load-sparse/load-traj 2026-02-11T13:11:01,757 creating build/lib/examples/path_sampling/gromacs-hydrate 2026-02-11T13:11:01,759 copying examples/path_sampling/gromacs-hydrate/test_order.py -> build/lib/examples/path_sampling/gromacs-hydrate 2026-02-11T13:11:01,761 copying examples/path_sampling/gromacs-hydrate/orderp.py -> build/lib/examples/path_sampling/gromacs-hydrate 2026-02-11T13:11:01,763 creating build/lib/examples/path_sampling/2D-hysteresis 2026-02-11T13:11:01,764 copying examples/path_sampling/2D-hysteresis/potential.py -> build/lib/examples/path_sampling/2D-hysteresis 2026-02-11T13:11:01,766 copying examples/path_sampling/2D-hysteresis/order.py -> build/lib/examples/path_sampling/2D-hysteresis 2026-02-11T13:11:01,769 creating build/lib/examples/path_sampling/1D-double-well-retis-movie 2026-02-11T13:11:01,770 copying examples/path_sampling/1D-double-well-retis-movie/retis.py -> build/lib/examples/path_sampling/1D-double-well-retis-movie 2026-02-11T13:11:01,772 copying examples/path_sampling/1D-double-well-retis-movie/retis_intro.py -> build/lib/examples/path_sampling/1D-double-well-retis-movie 2026-02-11T13:11:01,774 copying examples/path_sampling/1D-double-well-retis-movie/retis_movie.py -> build/lib/examples/path_sampling/1D-double-well-retis-movie 2026-02-11T13:11:01,776 copying examples/path_sampling/1D-double-well-retis-movie/retis_movie_log.py -> build/lib/examples/path_sampling/1D-double-well-retis-movie 2026-02-11T13:11:01,779 creating build/lib/examples/path_sampling/2D-wca/low-barrier 2026-02-11T13:11:01,781 copying examples/path_sampling/2D-wca/low-barrier/orderp.py -> build/lib/examples/path_sampling/2D-wca/low-barrier 2026-02-11T13:11:01,783 copying examples/path_sampling/2D-wca/low-barrier/generate_initial.py -> build/lib/examples/path_sampling/2D-wca/low-barrier 2026-02-11T13:11:01,785 creating build/lib/examples/path_sampling/2D-wca/high-barrier 2026-02-11T13:11:01,786 copying examples/path_sampling/2D-wca/high-barrier/generate_initial.py -> build/lib/examples/path_sampling/2D-wca/high-barrier 2026-02-11T13:11:01,788 creating build/lib/examples/path_sampling/2D-wca/low-barrier/c-for-python3 2026-02-11T13:11:01,789 copying examples/path_sampling/2D-wca/low-barrier/c-for-python3/setup.py -> build/lib/examples/path_sampling/2D-wca/low-barrier/c-for-python3 2026-02-11T13:11:01,791 copying examples/path_sampling/2D-wca/low-barrier/c-for-python3/orderp.py -> build/lib/examples/path_sampling/2D-wca/low-barrier/c-for-python3 2026-02-11T13:11:01,793 copying examples/path_sampling/2D-wca/low-barrier/c-for-python3/wcafunctions.py -> build/lib/examples/path_sampling/2D-wca/low-barrier/c-for-python3 2026-02-11T13:11:01,795 copying examples/path_sampling/2D-wca/low-barrier/c-for-python3/test_wcaforces.py -> build/lib/examples/path_sampling/2D-wca/low-barrier/c-for-python3 2026-02-11T13:11:01,798 creating build/lib/examples/path_sampling/2D-wca/high-barrier/c-for-python3 2026-02-11T13:11:01,799 copying examples/path_sampling/2D-wca/high-barrier/c-for-python3/setup.py -> build/lib/examples/path_sampling/2D-wca/high-barrier/c-for-python3 2026-02-11T13:11:01,801 copying examples/path_sampling/2D-wca/high-barrier/c-for-python3/test_orderparameter.py -> build/lib/examples/path_sampling/2D-wca/high-barrier/c-for-python3 2026-02-11T13:11:01,802 copying examples/path_sampling/2D-wca/high-barrier/c-for-python3/wcafunctions.py -> build/lib/examples/path_sampling/2D-wca/high-barrier/c-for-python3 2026-02-11T13:11:01,805 copying examples/path_sampling/2D-wca/high-barrier/c-for-python3/test_wcaforces.py -> build/lib/examples/path_sampling/2D-wca/high-barrier/c-for-python3 2026-02-11T13:11:01,807 creating build/lib/examples/path_sampling/2D-hysteresis/retis-y 2026-02-11T13:11:01,808 copying examples/path_sampling/2D-hysteresis/retis-y/plot_traj.py -> build/lib/examples/path_sampling/2D-hysteresis/retis-y 2026-02-11T13:11:01,811 creating build/lib/examples/path_sampling/2D-hysteresis/retis-xy 2026-02-11T13:11:01,812 copying examples/path_sampling/2D-hysteresis/retis-xy/orderp.py -> build/lib/examples/path_sampling/2D-hysteresis/retis-xy 2026-02-11T13:11:01,814 copying examples/path_sampling/2D-hysteresis/retis-xy/plot_traj.py -> build/lib/examples/path_sampling/2D-hysteresis/retis-xy 2026-02-11T13:11:01,817 creating build/lib/examples/path_sampling/2D-hysteresis/retis-x 2026-02-11T13:11:01,817 copying examples/path_sampling/2D-hysteresis/retis-x/plot_potential.py -> build/lib/examples/path_sampling/2D-hysteresis/retis-x 2026-02-11T13:11:01,819 copying examples/path_sampling/2D-hysteresis/retis-x/plot_traj.py -> build/lib/examples/path_sampling/2D-hysteresis/retis-x 2026-02-11T13:11:01,822 creating build/lib/examples/path_sampling/2D-hysteresis/interactive 2026-02-11T13:11:01,823 copying examples/path_sampling/2D-hysteresis/interactive/interactive-xy.py -> build/lib/examples/path_sampling/2D-hysteresis/interactive 2026-02-11T13:11:01,825 copying examples/path_sampling/2D-hysteresis/interactive/interactive-y.py -> build/lib/examples/path_sampling/2D-hysteresis/interactive 2026-02-11T13:11:01,828 copying examples/path_sampling/2D-hysteresis/interactive/interactive-x.py -> build/lib/examples/path_sampling/2D-hysteresis/interactive 2026-02-11T13:11:01,831 running egg_info 2026-02-11T13:11:01,859 writing pyretis.egg-info/PKG-INFO 2026-02-11T13:11:01,862 writing dependency_links to pyretis.egg-info/dependency_links.txt 2026-02-11T13:11:01,864 writing entry points to pyretis.egg-info/entry_points.txt 2026-02-11T13:11:01,866 writing requirements to pyretis.egg-info/requires.txt 2026-02-11T13:11:01,867 writing top-level names to pyretis.egg-info/top_level.txt 2026-02-11T13:11:01,993 reading manifest file 'pyretis.egg-info/SOURCES.txt' 2026-02-11T13:11:02,017 reading manifest template 'MANIFEST.in' 2026-02-11T13:11:02,020 adding license file 'LICENSE' 2026-02-11T13:11:02,039 writing manifest file 'pyretis.egg-info/SOURCES.txt' 2026-02-11T13:11:02,095 copying pyretis/pyvisa/pyvisaGUI.ui -> build/lib/pyretis/pyvisa 2026-02-11T13:11:02,099 creating build/lib/pyretis/inout/plotting/styles 2026-02-11T13:11:02,100 copying pyretis/inout/plotting/styles/pyretis.mplstyle -> build/lib/pyretis/inout/plotting/styles 2026-02-11T13:11:02,102 copying pyretis/inout/plotting/styles/pyretisweb.mplstyle -> build/lib/pyretis/inout/plotting/styles 2026-02-11T13:11:02,104 creating build/lib/pyretis/inout/report/templates 2026-02-11T13:11:02,105 copying pyretis/inout/report/templates/report_mdflux.rst -> build/lib/pyretis/inout/report/templates 2026-02-11T13:11:02,108 copying pyretis/inout/report/templates/report_mdflux.tex -> build/lib/pyretis/inout/report/templates 2026-02-11T13:11:02,110 copying pyretis/inout/report/templates/report_mdflux.txt -> build/lib/pyretis/inout/report/templates 2026-02-11T13:11:02,112 copying pyretis/inout/report/templates/report_pptis.txt -> build/lib/pyretis/inout/report/templates 2026-02-11T13:11:02,114 copying pyretis/inout/report/templates/report_repptis.rst -> build/lib/pyretis/inout/report/templates 2026-02-11T13:11:02,116 copying pyretis/inout/report/templates/report_repptis.tex -> build/lib/pyretis/inout/report/templates 2026-02-11T13:11:02,119 copying pyretis/inout/report/templates/report_retis.rst -> build/lib/pyretis/inout/report/templates 2026-02-11T13:11:02,121 copying pyretis/inout/report/templates/report_retis.tex -> build/lib/pyretis/inout/report/templates 2026-02-11T13:11:02,123 copying pyretis/inout/report/templates/report_retis0.txt -> build/lib/pyretis/inout/report/templates 2026-02-11T13:11:02,125 copying pyretis/inout/report/templates/report_tis-multiple.rst -> build/lib/pyretis/inout/report/templates 2026-02-11T13:11:02,128 copying pyretis/inout/report/templates/report_tis-multiple.tex -> build/lib/pyretis/inout/report/templates 2026-02-11T13:11:02,130 copying pyretis/inout/report/templates/report_tis-multiple.txt -> build/lib/pyretis/inout/report/templates 2026-02-11T13:11:02,132 copying pyretis/inout/report/templates/report_tis.rst -> build/lib/pyretis/inout/report/templates 2026-02-11T13:11:02,134 copying pyretis/inout/report/templates/report_tis.tex -> build/lib/pyretis/inout/report/templates 2026-02-11T13:11:02,136 copying pyretis/inout/report/templates/report_tis.txt -> build/lib/pyretis/inout/report/templates 2026-02-11T13:11:02,213 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2026-02-11T13:11:02,214 !! 2026-02-11T13:11:02,215 ******************************************************************************** 2026-02-11T13:11:02,215 Please avoid running ``setup.py`` directly. 2026-02-11T13:11:02,216 Instead, use pypa/build, pypa/installer or other 2026-02-11T13:11:02,216 standards-based tools. 2026-02-11T13:11:02,217 This deprecation is overdue, please update your project and remove deprecated 2026-02-11T13:11:02,218 calls to avoid build errors in the future. 2026-02-11T13:11:02,219 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2026-02-11T13:11:02,219 ******************************************************************************** 2026-02-11T13:11:02,220 !! 2026-02-11T13:11:02,221 self.initialize_options() 2026-02-11T13:11:02,242 installing to build/bdist.linux-armv7l/wheel 2026-02-11T13:11:02,243 running install 2026-02-11T13:11:02,266 running install_lib 2026-02-11T13:11:02,292 creating build/bdist.linux-armv7l/wheel 2026-02-11T13:11:02,294 creating build/bdist.linux-armv7l/wheel/pyretis 2026-02-11T13:11:02,295 creating build/bdist.linux-armv7l/wheel/pyretis/setup 2026-02-11T13:11:02,297 copying build/lib/pyretis/setup/createforcefield.py -> build/bdist.linux-armv7l/wheel/./pyretis/setup 2026-02-11T13:11:02,299 copying build/lib/pyretis/setup/__init__.py -> build/bdist.linux-armv7l/wheel/./pyretis/setup 2026-02-11T13:11:02,301 copying build/lib/pyretis/setup/createsimulation.py -> build/bdist.linux-armv7l/wheel/./pyretis/setup 2026-02-11T13:11:02,303 copying build/lib/pyretis/setup/createsystem.py -> build/bdist.linux-armv7l/wheel/./pyretis/setup 2026-02-11T13:11:02,306 copying build/lib/pyretis/setup/common.py -> build/bdist.linux-armv7l/wheel/./pyretis/setup 2026-02-11T13:11:02,309 creating build/bdist.linux-armv7l/wheel/pyretis/simulation 2026-02-11T13:11:02,310 copying build/lib/pyretis/simulation/mc_simulation.py -> build/bdist.linux-armv7l/wheel/./pyretis/simulation 2026-02-11T13:11:02,312 copying build/lib/pyretis/simulation/md_simulation.py -> build/bdist.linux-armv7l/wheel/./pyretis/simulation 2026-02-11T13:11:02,315 copying build/lib/pyretis/simulation/simulation_task.py -> build/bdist.linux-armv7l/wheel/./pyretis/simulation 2026-02-11T13:11:02,317 copying build/lib/pyretis/simulation/__init__.py -> build/bdist.linux-armv7l/wheel/./pyretis/simulation 2026-02-11T13:11:02,319 copying build/lib/pyretis/simulation/simulation.py -> build/bdist.linux-armv7l/wheel/./pyretis/simulation 2026-02-11T13:11:02,321 copying build/lib/pyretis/simulation/path_simulation.py -> build/bdist.linux-armv7l/wheel/./pyretis/simulation 2026-02-11T13:11:02,324 copying build/lib/pyretis/version.py -> build/bdist.linux-armv7l/wheel/./pyretis 2026-02-11T13:11:02,326 copying build/lib/pyretis/__init__.py -> build/bdist.linux-armv7l/wheel/./pyretis 2026-02-11T13:11:02,328 creating build/bdist.linux-armv7l/wheel/pyretis/testing 2026-02-11T13:11:02,329 copying build/lib/pyretis/testing/helpers.py -> build/bdist.linux-armv7l/wheel/./pyretis/testing 2026-02-11T13:11:02,331 copying build/lib/pyretis/testing/__init__.py -> build/bdist.linux-armv7l/wheel/./pyretis/testing 2026-02-11T13:11:02,333 copying build/lib/pyretis/testing/compare.py -> build/bdist.linux-armv7l/wheel/./pyretis/testing 2026-02-11T13:11:02,335 copying build/lib/pyretis/testing/systemhelp.py -> build/bdist.linux-armv7l/wheel/./pyretis/testing 2026-02-11T13:11:02,337 creating build/bdist.linux-armv7l/wheel/pyretis/analysis 2026-02-11T13:11:02,338 copying build/lib/pyretis/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/./pyretis/analysis 2026-02-11T13:11:02,341 copying build/lib/pyretis/analysis/flux_analysis.py -> build/bdist.linux-armv7l/wheel/./pyretis/analysis 2026-02-11T13:11:02,343 copying build/lib/pyretis/analysis/path_analysis.py -> build/bdist.linux-armv7l/wheel/./pyretis/analysis 2026-02-11T13:11:02,346 copying build/lib/pyretis/analysis/energy_analysis.py -> build/bdist.linux-armv7l/wheel/./pyretis/analysis 2026-02-11T13:11:02,348 copying build/lib/pyretis/analysis/order_analysis.py -> build/bdist.linux-armv7l/wheel/./pyretis/analysis 2026-02-11T13:11:02,350 copying build/lib/pyretis/analysis/analysis.py -> build/bdist.linux-armv7l/wheel/./pyretis/analysis 2026-02-11T13:11:02,352 copying build/lib/pyretis/analysis/histogram.py -> build/bdist.linux-armv7l/wheel/./pyretis/analysis 2026-02-11T13:11:02,355 creating build/bdist.linux-armv7l/wheel/pyretis/core 2026-02-11T13:11:02,355 copying build/lib/pyretis/core/retis.py -> build/bdist.linux-armv7l/wheel/./pyretis/core 2026-02-11T13:11:02,359 copying build/lib/pyretis/core/__init__.py -> build/bdist.linux-armv7l/wheel/./pyretis/core 2026-02-11T13:11:02,360 copying build/lib/pyretis/core/system.py -> build/bdist.linux-armv7l/wheel/./pyretis/core 2026-02-11T13:11:02,363 copying build/lib/pyretis/core/properties.py -> build/bdist.linux-armv7l/wheel/./pyretis/core 2026-02-11T13:11:02,365 copying build/lib/pyretis/core/common.py -> build/bdist.linux-armv7l/wheel/./pyretis/core 2026-02-11T13:11:02,367 copying build/lib/pyretis/core/tis.py -> build/bdist.linux-armv7l/wheel/./pyretis/core 2026-02-11T13:11:02,370 copying build/lib/pyretis/core/random_gen.py -> build/bdist.linux-armv7l/wheel/./pyretis/core 2026-02-11T13:11:02,373 copying build/lib/pyretis/core/particlefunctions.py -> build/bdist.linux-armv7l/wheel/./pyretis/core 2026-02-11T13:11:02,375 copying build/lib/pyretis/core/pathensemble.py -> build/bdist.linux-armv7l/wheel/./pyretis/core 2026-02-11T13:11:02,378 copying build/lib/pyretis/core/particles.py -> build/bdist.linux-armv7l/wheel/./pyretis/core 2026-02-11T13:11:02,380 copying build/lib/pyretis/core/path.py -> build/bdist.linux-armv7l/wheel/./pyretis/core 2026-02-11T13:11:02,383 copying build/lib/pyretis/core/units.py -> build/bdist.linux-armv7l/wheel/./pyretis/core 2026-02-11T13:11:02,386 copying build/lib/pyretis/core/box.py -> build/bdist.linux-armv7l/wheel/./pyretis/core 2026-02-11T13:11:02,388 copying build/lib/pyretis/core/montecarlo.py -> build/bdist.linux-armv7l/wheel/./pyretis/core 2026-02-11T13:11:02,391 creating build/bdist.linux-armv7l/wheel/pyretis/bin 2026-02-11T13:11:02,392 copying build/lib/pyretis/bin/pyvisa.py -> build/bdist.linux-armv7l/wheel/./pyretis/bin 2026-02-11T13:11:02,394 copying build/lib/pyretis/bin/pyretisanalyse.py -> build/bdist.linux-armv7l/wheel/./pyretis/bin 2026-02-11T13:11:02,396 copying build/lib/pyretis/bin/pyretisrun.py -> build/bdist.linux-armv7l/wheel/./pyretis/bin 2026-02-11T13:11:02,398 copying build/lib/pyretis/info.py -> build/bdist.linux-armv7l/wheel/./pyretis 2026-02-11T13:11:02,401 creating build/bdist.linux-armv7l/wheel/pyretis/initiation 2026-02-11T13:11:02,402 copying build/lib/pyretis/initiation/__init__.py -> build/bdist.linux-armv7l/wheel/./pyretis/initiation 2026-02-11T13:11:02,404 copying build/lib/pyretis/initiation/initiate_restart.py -> build/bdist.linux-armv7l/wheel/./pyretis/initiation 2026-02-11T13:11:02,405 copying build/lib/pyretis/initiation/initiate_load.py -> build/bdist.linux-armv7l/wheel/./pyretis/initiation 2026-02-11T13:11:02,408 copying build/lib/pyretis/initiation/initiate_kick.py -> build/bdist.linux-armv7l/wheel/./pyretis/initiation 2026-02-11T13:11:02,411 creating build/bdist.linux-armv7l/wheel/pyretis/engines 2026-02-11T13:11:02,412 copying build/lib/pyretis/engines/external.py -> build/bdist.linux-armv7l/wheel/./pyretis/engines 2026-02-11T13:11:02,415 copying build/lib/pyretis/engines/gromacs2.py -> build/bdist.linux-armv7l/wheel/./pyretis/engines 2026-02-11T13:11:02,418 copying build/lib/pyretis/engines/__init__.py -> build/bdist.linux-armv7l/wheel/./pyretis/engines 2026-02-11T13:11:02,420 copying build/lib/pyretis/engines/engine.py -> build/bdist.linux-armv7l/wheel/./pyretis/engines 2026-02-11T13:11:02,422 copying build/lib/pyretis/engines/gromacs.py -> build/bdist.linux-armv7l/wheel/./pyretis/engines 2026-02-11T13:11:02,425 copying build/lib/pyretis/engines/lammps.py -> build/bdist.linux-armv7l/wheel/./pyretis/engines 2026-02-11T13:11:02,427 copying build/lib/pyretis/engines/openmm.py -> build/bdist.linux-armv7l/wheel/./pyretis/engines 2026-02-11T13:11:02,430 copying build/lib/pyretis/engines/internal.py -> build/bdist.linux-armv7l/wheel/./pyretis/engines 2026-02-11T13:11:02,433 copying build/lib/pyretis/engines/cp2k.py -> build/bdist.linux-armv7l/wheel/./pyretis/engines 2026-02-11T13:11:02,436 creating build/bdist.linux-armv7l/wheel/pyretis/tools 2026-02-11T13:11:02,437 copying build/lib/pyretis/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./pyretis/tools 2026-02-11T13:11:02,438 copying build/lib/pyretis/tools/recalculate_order.py -> build/bdist.linux-armv7l/wheel/./pyretis/tools 2026-02-11T13:11:02,441 copying build/lib/pyretis/tools/lattice.py -> build/bdist.linux-armv7l/wheel/./pyretis/tools 2026-02-11T13:11:02,443 creating build/bdist.linux-armv7l/wheel/pyretis/pyvisa 2026-02-11T13:11:02,444 copying build/lib/pyretis/pyvisa/__init__.py -> build/bdist.linux-armv7l/wheel/./pyretis/pyvisa 2026-02-11T13:11:02,446 copying build/lib/pyretis/pyvisa/plotting.py -> build/bdist.linux-armv7l/wheel/./pyretis/pyvisa 2026-02-11T13:11:02,448 copying build/lib/pyretis/pyvisa/resources_rc.py -> build/bdist.linux-armv7l/wheel/./pyretis/pyvisa 2026-02-11T13:11:02,471 copying build/lib/pyretis/pyvisa/common.py -> build/bdist.linux-armv7l/wheel/./pyretis/pyvisa 2026-02-11T13:11:02,473 copying build/lib/pyretis/pyvisa/info.py -> build/bdist.linux-armv7l/wheel/./pyretis/pyvisa 2026-02-11T13:11:02,475 copying build/lib/pyretis/pyvisa/statistical_methods.py -> build/bdist.linux-armv7l/wheel/./pyretis/pyvisa 2026-02-11T13:11:02,477 copying build/lib/pyretis/pyvisa/pyvisaGUI.ui -> build/bdist.linux-armv7l/wheel/./pyretis/pyvisa 2026-02-11T13:11:02,481 copying build/lib/pyretis/pyvisa/orderparam_density.py -> build/bdist.linux-armv7l/wheel/./pyretis/pyvisa 2026-02-11T13:11:02,483 copying build/lib/pyretis/pyvisa/visualize.py -> build/bdist.linux-armv7l/wheel/./pyretis/pyvisa 2026-02-11T13:11:02,487 creating build/bdist.linux-armv7l/wheel/pyretis/orderparameter 2026-02-11T13:11:02,488 copying build/lib/pyretis/orderparameter/__init__.py -> build/bdist.linux-armv7l/wheel/./pyretis/orderparameter 2026-02-11T13:11:02,490 copying build/lib/pyretis/orderparameter/orderangle.py -> build/bdist.linux-armv7l/wheel/./pyretis/orderparameter 2026-02-11T13:11:02,492 copying build/lib/pyretis/orderparameter/orderdihedral.py -> build/bdist.linux-armv7l/wheel/./pyretis/orderparameter 2026-02-11T13:11:02,494 copying build/lib/pyretis/orderparameter/orderparameter.py -> build/bdist.linux-armv7l/wheel/./pyretis/orderparameter 2026-02-11T13:11:02,497 creating build/bdist.linux-armv7l/wheel/pyretis/forcefield 2026-02-11T13:11:02,499 creating build/bdist.linux-armv7l/wheel/pyretis/forcefield/potentials 2026-02-11T13:11:02,500 copying build/lib/pyretis/forcefield/potentials/__init__.py -> build/bdist.linux-armv7l/wheel/./pyretis/forcefield/potentials 2026-02-11T13:11:02,502 creating build/bdist.linux-armv7l/wheel/pyretis/forcefield/potentials/pairpotentials 2026-02-11T13:11:02,503 copying build/lib/pyretis/forcefield/potentials/pairpotentials/__init__.py -> build/bdist.linux-armv7l/wheel/./pyretis/forcefield/potentials/pairpotentials 2026-02-11T13:11:02,505 copying build/lib/pyretis/forcefield/potentials/pairpotentials/pairpotential.py -> build/bdist.linux-armv7l/wheel/./pyretis/forcefield/potentials/pairpotentials 2026-02-11T13:11:02,507 copying build/lib/pyretis/forcefield/potentials/pairpotentials/lennardjones.py -> build/bdist.linux-armv7l/wheel/./pyretis/forcefield/potentials/pairpotentials 2026-02-11T13:11:02,510 copying build/lib/pyretis/forcefield/potentials/pairpotentials/wca.py -> build/bdist.linux-armv7l/wheel/./pyretis/forcefield/potentials/pairpotentials 2026-02-11T13:11:02,512 copying build/lib/pyretis/forcefield/potentials/potentials.py -> build/bdist.linux-armv7l/wheel/./pyretis/forcefield/potentials 2026-02-11T13:11:02,515 copying build/lib/pyretis/forcefield/potential.py -> build/bdist.linux-armv7l/wheel/./pyretis/forcefield 2026-02-11T13:11:02,517 copying build/lib/pyretis/forcefield/forcefield.py -> build/bdist.linux-armv7l/wheel/./pyretis/forcefield 2026-02-11T13:11:02,519 copying build/lib/pyretis/forcefield/__init__.py -> build/bdist.linux-armv7l/wheel/./pyretis/forcefield 2026-02-11T13:11:02,521 copying build/lib/pyretis/forcefield/factory.py -> build/bdist.linux-armv7l/wheel/./pyretis/forcefield 2026-02-11T13:11:02,523 creating build/bdist.linux-armv7l/wheel/pyretis/inout 2026-02-11T13:11:02,524 copying build/lib/pyretis/inout/__init__.py -> build/bdist.linux-armv7l/wheel/./pyretis/inout 2026-02-11T13:11:02,526 copying build/lib/pyretis/inout/restart.py -> build/bdist.linux-armv7l/wheel/./pyretis/inout 2026-02-11T13:11:02,528 creating build/bdist.linux-armv7l/wheel/pyretis/inout/analysisio 2026-02-11T13:11:02,529 copying build/lib/pyretis/inout/analysisio/__init__.py -> build/bdist.linux-armv7l/wheel/./pyretis/inout/analysisio 2026-02-11T13:11:02,531 copying build/lib/pyretis/inout/analysisio/analysisio.py -> build/bdist.linux-armv7l/wheel/./pyretis/inout/analysisio 2026-02-11T13:11:02,534 copying build/lib/pyretis/inout/common.py -> build/bdist.linux-armv7l/wheel/./pyretis/inout 2026-02-11T13:11:02,537 creating build/bdist.linux-armv7l/wheel/pyretis/inout/plotting 2026-02-11T13:11:02,538 copying build/lib/pyretis/inout/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./pyretis/inout/plotting 2026-02-11T13:11:02,541 copying build/lib/pyretis/inout/plotting/mpl_plotting.py -> build/bdist.linux-armv7l/wheel/./pyretis/inout/plotting 2026-02-11T13:11:02,544 copying build/lib/pyretis/inout/plotting/plotting.py -> build/bdist.linux-armv7l/wheel/./pyretis/inout/plotting 2026-02-11T13:11:02,547 creating build/bdist.linux-armv7l/wheel/pyretis/inout/plotting/styles 2026-02-11T13:11:02,548 copying build/lib/pyretis/inout/plotting/styles/pyretis.mplstyle -> build/bdist.linux-armv7l/wheel/./pyretis/inout/plotting/styles 2026-02-11T13:11:02,551 copying build/lib/pyretis/inout/plotting/styles/pyretisweb.mplstyle -> build/bdist.linux-armv7l/wheel/./pyretis/inout/plotting/styles 2026-02-11T13:11:02,553 copying build/lib/pyretis/inout/plotting/txt_plotting.py -> build/bdist.linux-armv7l/wheel/./pyretis/inout/plotting 2026-02-11T13:11:02,556 copying build/lib/pyretis/inout/screen.py -> build/bdist.linux-armv7l/wheel/./pyretis/inout 2026-02-11T13:11:02,558 copying build/lib/pyretis/inout/simulationio.py -> build/bdist.linux-armv7l/wheel/./pyretis/inout 2026-02-11T13:11:02,560 copying build/lib/pyretis/inout/archive.py -> build/bdist.linux-armv7l/wheel/./pyretis/inout 2026-02-11T13:11:02,562 copying build/lib/pyretis/inout/settings.py -> build/bdist.linux-armv7l/wheel/./pyretis/inout 2026-02-11T13:11:02,566 creating build/bdist.linux-armv7l/wheel/pyretis/inout/formats 2026-02-11T13:11:02,567 copying build/lib/pyretis/inout/formats/snapshot.py -> build/bdist.linux-armv7l/wheel/./pyretis/inout/formats 2026-02-11T13:11:02,569 copying build/lib/pyretis/inout/formats/formatter.py -> build/bdist.linux-armv7l/wheel/./pyretis/inout/formats 2026-02-11T13:11:02,572 copying build/lib/pyretis/inout/formats/__init__.py -> build/bdist.linux-armv7l/wheel/./pyretis/inout/formats 2026-02-11T13:11:02,573 copying build/lib/pyretis/inout/formats/cross.py -> build/bdist.linux-armv7l/wheel/./pyretis/inout/formats 2026-02-11T13:11:02,576 copying build/lib/pyretis/inout/formats/order.py -> build/bdist.linux-armv7l/wheel/./pyretis/inout/formats 2026-02-11T13:11:02,578 copying build/lib/pyretis/inout/formats/txt_table.py -> build/bdist.linux-armv7l/wheel/./pyretis/inout/formats 2026-02-11T13:11:02,581 copying build/lib/pyretis/inout/formats/gromacs.py -> build/bdist.linux-armv7l/wheel/./pyretis/inout/formats 2026-02-11T13:11:02,584 copying build/lib/pyretis/inout/formats/energy.py -> build/bdist.linux-armv7l/wheel/./pyretis/inout/formats 2026-02-11T13:11:02,586 copying build/lib/pyretis/inout/formats/pathensemble.py -> build/bdist.linux-armv7l/wheel/./pyretis/inout/formats 2026-02-11T13:11:02,588 copying build/lib/pyretis/inout/formats/xyz.py -> build/bdist.linux-armv7l/wheel/./pyretis/inout/formats 2026-02-11T13:11:02,590 copying build/lib/pyretis/inout/formats/path.py -> build/bdist.linux-armv7l/wheel/./pyretis/inout/formats 2026-02-11T13:11:02,592 copying build/lib/pyretis/inout/formats/cp2k.py -> build/bdist.linux-armv7l/wheel/./pyretis/inout/formats 2026-02-11T13:11:02,595 copying build/lib/pyretis/inout/fileio.py -> build/bdist.linux-armv7l/wheel/./pyretis/inout 2026-02-11T13:11:02,597 copying build/lib/pyretis/inout/checker.py -> build/bdist.linux-armv7l/wheel/./pyretis/inout 2026-02-11T13:11:02,600 creating build/bdist.linux-armv7l/wheel/pyretis/inout/report 2026-02-11T13:11:02,601 copying build/lib/pyretis/inout/report/report_path.py -> build/bdist.linux-armv7l/wheel/./pyretis/inout/report 2026-02-11T13:11:02,603 copying build/lib/pyretis/inout/report/__init__.py -> build/bdist.linux-armv7l/wheel/./pyretis/inout/report 2026-02-11T13:11:02,605 copying build/lib/pyretis/inout/report/report_md.py -> build/bdist.linux-armv7l/wheel/./pyretis/inout/report 2026-02-11T13:11:02,608 copying build/lib/pyretis/inout/report/report.py -> build/bdist.linux-armv7l/wheel/./pyretis/inout/report 2026-02-11T13:11:02,611 creating build/bdist.linux-armv7l/wheel/pyretis/inout/report/templates 2026-02-11T13:11:02,612 copying build/lib/pyretis/inout/report/templates/report_retis0.txt -> build/bdist.linux-armv7l/wheel/./pyretis/inout/report/templates 2026-02-11T13:11:02,614 copying build/lib/pyretis/inout/report/templates/report_repptis.tex -> build/bdist.linux-armv7l/wheel/./pyretis/inout/report/templates 2026-02-11T13:11:02,616 copying build/lib/pyretis/inout/report/templates/report_tis-multiple.txt -> build/bdist.linux-armv7l/wheel/./pyretis/inout/report/templates 2026-02-11T13:11:02,618 copying build/lib/pyretis/inout/report/templates/report_tis-multiple.tex -> build/bdist.linux-armv7l/wheel/./pyretis/inout/report/templates 2026-02-11T13:11:02,619 copying build/lib/pyretis/inout/report/templates/report_mdflux.tex -> build/bdist.linux-armv7l/wheel/./pyretis/inout/report/templates 2026-02-11T13:11:02,621 copying build/lib/pyretis/inout/report/templates/report_tis.txt -> build/bdist.linux-armv7l/wheel/./pyretis/inout/report/templates 2026-02-11T13:11:02,623 copying build/lib/pyretis/inout/report/templates/report_mdflux.rst -> build/bdist.linux-armv7l/wheel/./pyretis/inout/report/templates 2026-02-11T13:11:02,625 copying build/lib/pyretis/inout/report/templates/report_tis.rst -> build/bdist.linux-armv7l/wheel/./pyretis/inout/report/templates 2026-02-11T13:11:02,627 copying build/lib/pyretis/inout/report/templates/report_retis.tex -> build/bdist.linux-armv7l/wheel/./pyretis/inout/report/templates 2026-02-11T13:11:02,629 copying build/lib/pyretis/inout/report/templates/report_pptis.txt -> build/bdist.linux-armv7l/wheel/./pyretis/inout/report/templates 2026-02-11T13:11:02,631 copying build/lib/pyretis/inout/report/templates/report_tis-multiple.rst -> build/bdist.linux-armv7l/wheel/./pyretis/inout/report/templates 2026-02-11T13:11:02,633 copying build/lib/pyretis/inout/report/templates/report_mdflux.txt -> build/bdist.linux-armv7l/wheel/./pyretis/inout/report/templates 2026-02-11T13:11:02,635 copying build/lib/pyretis/inout/report/templates/report_repptis.rst -> build/bdist.linux-armv7l/wheel/./pyretis/inout/report/templates 2026-02-11T13:11:02,637 copying build/lib/pyretis/inout/report/templates/report_retis.rst -> build/bdist.linux-armv7l/wheel/./pyretis/inout/report/templates 2026-02-11T13:11:02,639 copying build/lib/pyretis/inout/report/templates/report_tis.tex -> build/bdist.linux-armv7l/wheel/./pyretis/inout/report/templates 2026-02-11T13:11:02,641 copying build/lib/pyretis/inout/report/markup.py -> build/bdist.linux-armv7l/wheel/./pyretis/inout/report 2026-02-11T13:11:02,643 creating build/bdist.linux-armv7l/wheel/docs 2026-02-11T13:11:02,645 creating build/bdist.linux-armv7l/wheel/docs/ext 2026-02-11T13:11:02,646 copying build/lib/docs/ext/pyretis_collapse_block.py -> build/bdist.linux-armv7l/wheel/./docs/ext 2026-02-11T13:11:02,648 copying build/lib/docs/ext/pyretis_highlight.py -> build/bdist.linux-armv7l/wheel/./docs/ext 2026-02-11T13:11:02,650 copying build/lib/docs/ext/pyretis_translator.py -> build/bdist.linux-armv7l/wheel/./docs/ext 2026-02-11T13:11:02,651 copying build/lib/docs/ext/pyretisstyle.py -> build/bdist.linux-armv7l/wheel/./docs/ext 2026-02-11T13:11:02,653 copying build/lib/docs/ext/pyretis_input_example.py -> build/bdist.linux-armv7l/wheel/./docs/ext 2026-02-11T13:11:02,655 copying build/lib/docs/ext/pyretis_keyword.py -> build/bdist.linux-armv7l/wheel/./docs/ext 2026-02-11T13:11:02,657 creating build/bdist.linux-armv7l/wheel/docs/_static 2026-02-11T13:11:02,658 creating build/bdist.linux-armv7l/wheel/docs/_static/orderparameter-examples 2026-02-11T13:11:02,660 copying build/lib/docs/_static/orderparameter-examples/orderparameter2.py -> build/bdist.linux-armv7l/wheel/./docs/_static/orderparameter-examples 2026-02-11T13:11:02,662 copying build/lib/docs/_static/orderparameter-examples/orderparameter1.py -> build/bdist.linux-armv7l/wheel/./docs/_static/orderparameter-examples 2026-02-11T13:11:02,664 creating build/bdist.linux-armv7l/wheel/docs/_static/api 2026-02-11T13:11:02,665 copying build/lib/docs/_static/api/box_example_create.py -> build/bdist.linux-armv7l/wheel/./docs/_static/api 2026-02-11T13:11:02,667 copying build/lib/docs/_static/api/lattice_example.py -> build/bdist.linux-armv7l/wheel/./docs/_static/api 2026-02-11T13:11:02,668 copying build/lib/docs/_static/api/box_example.py -> build/bdist.linux-armv7l/wheel/./docs/_static/api 2026-02-11T13:11:02,671 creating build/bdist.linux-armv7l/wheel/docs/_static/engine-examples 2026-02-11T13:11:02,672 copying build/lib/docs/_static/engine-examples/openmm_sim.py -> build/bdist.linux-armv7l/wheel/./docs/_static/engine-examples 2026-02-11T13:11:02,674 copying build/lib/docs/_static/engine-examples/leapfrog.py -> build/bdist.linux-armv7l/wheel/./docs/_static/engine-examples 2026-02-11T13:11:02,675 copying build/lib/docs/_static/engine-examples/newexternal.py -> build/bdist.linux-armv7l/wheel/./docs/_static/engine-examples 2026-02-11T13:11:02,678 creating build/bdist.linux-armv7l/wheel/docs/_static/examples 2026-02-11T13:11:02,680 creating build/bdist.linux-armv7l/wheel/docs/_static/examples/gromacs-hydrate 2026-02-11T13:11:02,681 copying build/lib/docs/_static/examples/gromacs-hydrate/orderp.py -> build/bdist.linux-armv7l/wheel/./docs/_static/examples/gromacs-hydrate 2026-02-11T13:11:02,683 copying build/lib/docs/_static/examples/examples_mc.py -> build/bdist.linux-armv7l/wheel/./docs/_static/examples 2026-02-11T13:11:02,686 creating build/bdist.linux-armv7l/wheel/docs/_static/examples/pyvisa-analysis 2026-02-11T13:11:02,687 copying build/lib/docs/_static/examples/pyvisa-analysis/orderp.py -> build/bdist.linux-armv7l/wheel/./docs/_static/examples/pyvisa-analysis 2026-02-11T13:11:02,689 copying build/lib/docs/_static/examples/orderintro.py -> build/bdist.linux-armv7l/wheel/./docs/_static/examples 2026-02-11T13:11:02,691 copying build/lib/docs/_static/examples/orderintro2.py -> build/bdist.linux-armv7l/wheel/./docs/_static/examples 2026-02-11T13:11:02,693 creating build/bdist.linux-armv7l/wheel/docs/_static/examples/retis2d-wca 2026-02-11T13:11:02,694 copying build/lib/docs/_static/examples/retis2d-wca/orderp.py -> build/bdist.linux-armv7l/wheel/./docs/_static/examples/retis2d-wca 2026-02-11T13:11:02,697 creating build/bdist.linux-armv7l/wheel/docs/_static/examples/extending-example 2026-02-11T13:11:02,698 creating build/bdist.linux-armv7l/wheel/docs/_static/examples/extending-example/potentialfb 2026-02-11T13:11:02,700 copying build/lib/docs/_static/examples/extending-example/potentialfb/ljpotentialf.py -> build/bdist.linux-armv7l/wheel/./docs/_static/examples/extending-example/potentialfb 2026-02-11T13:11:02,702 copying build/lib/docs/_static/examples/extending-example/potentialfb/setup.py -> build/bdist.linux-armv7l/wheel/./docs/_static/examples/extending-example/potentialfb 2026-02-11T13:11:02,704 copying build/lib/docs/_static/examples/extending-example/potentialfb/ljpotentialc.py -> build/bdist.linux-armv7l/wheel/./docs/_static/examples/extending-example/potentialfb 2026-02-11T13:11:02,706 copying build/lib/docs/_static/examples/extending-example/potentialfb/md_forward_backward_ext.py -> build/bdist.linux-armv7l/wheel/./docs/_static/examples/extending-example/potentialfb 2026-02-11T13:11:02,708 creating build/bdist.linux-armv7l/wheel/docs/_static/examples/extending-example/potential 2026-02-11T13:11:02,709 copying build/lib/docs/_static/examples/extending-example/potential/ljpotentialfp.py -> build/bdist.linux-armv7l/wheel/./docs/_static/examples/extending-example/potential 2026-02-11T13:11:02,712 copying build/lib/docs/_static/examples/extending-example/potential/setup.py -> build/bdist.linux-armv7l/wheel/./docs/_static/examples/extending-example/potential 2026-02-11T13:11:02,714 copying build/lib/docs/_static/examples/extending-example/potential/ljpotentialc.py -> build/bdist.linux-armv7l/wheel/./docs/_static/examples/extending-example/potential 2026-02-11T13:11:02,717 creating build/bdist.linux-armv7l/wheel/docs/_static/examples/extending-example/engine 2026-02-11T13:11:02,718 copying build/lib/docs/_static/examples/extending-example/engine/setup.py -> build/bdist.linux-armv7l/wheel/./docs/_static/examples/extending-example/engine 2026-02-11T13:11:02,719 copying build/lib/docs/_static/examples/extending-example/engine/vvintegratorf.py -> build/bdist.linux-armv7l/wheel/./docs/_static/examples/extending-example/engine 2026-02-11T13:11:02,721 copying build/lib/docs/_static/examples/extending-example/engine/vvintegratorc.py -> build/bdist.linux-armv7l/wheel/./docs/_static/examples/extending-example/engine 2026-02-11T13:11:02,724 creating build/bdist.linux-armv7l/wheel/docs/_static/examples/retis2d-hysteresis 2026-02-11T13:11:02,725 copying build/lib/docs/_static/examples/retis2d-hysteresis/potential.py -> build/bdist.linux-armv7l/wheel/./docs/_static/examples/retis2d-hysteresis 2026-02-11T13:11:02,728 copying build/lib/docs/_static/examples/retis2d-hysteresis/order-x.py -> build/bdist.linux-armv7l/wheel/./docs/_static/examples/retis2d-hysteresis 2026-02-11T13:11:02,729 copying build/lib/docs/_static/examples/retis2d-hysteresis/order-xy.py -> build/bdist.linux-armv7l/wheel/./docs/_static/examples/retis2d-hysteresis 2026-02-11T13:11:02,731 copying build/lib/docs/_static/examples/md.py -> build/bdist.linux-armv7l/wheel/./docs/_static/examples 2026-02-11T13:11:02,733 copying build/lib/docs/_static/examples/harmonic1d.py -> build/bdist.linux-armv7l/wheel/./docs/_static/examples 2026-02-11T13:11:02,736 creating build/bdist.linux-armv7l/wheel/docs/_static/examples/permeability 2026-02-11T13:11:02,737 copying build/lib/docs/_static/examples/permeability/flat_potential.py -> build/bdist.linux-armv7l/wheel/./docs/_static/examples/permeability 2026-02-11T13:11:02,739 copying build/lib/docs/_static/examples/pathintro.py -> build/bdist.linux-armv7l/wheel/./docs/_static/examples 2026-02-11T13:11:02,740 copying build/lib/docs/_static/examples/simulationintro.py -> build/bdist.linux-armv7l/wheel/./docs/_static/examples 2026-02-11T13:11:02,743 creating build/bdist.linux-armv7l/wheel/docs/_static/examples/pso-example 2026-02-11T13:11:02,744 copying build/lib/docs/_static/examples/pso-example/psoengine.py -> build/bdist.linux-armv7l/wheel/./docs/_static/examples/pso-example 2026-02-11T13:11:02,746 copying build/lib/docs/_static/examples/pso-example/pso_run.py -> build/bdist.linux-armv7l/wheel/./docs/_static/examples/pso-example 2026-02-11T13:11:02,748 copying build/lib/docs/_static/examples/pso-example/ackley.py -> build/bdist.linux-armv7l/wheel/./docs/_static/examples/pso-example 2026-02-11T13:11:02,750 creating build/bdist.linux-armv7l/wheel/docs/_static/exercises 2026-02-11T13:11:02,751 copying build/lib/docs/_static/exercises/retis.py -> build/bdist.linux-armv7l/wheel/./docs/_static/exercises 2026-02-11T13:11:02,754 copying build/lib/docs/_static/exercises/retis_movie.py -> build/bdist.linux-armv7l/wheel/./docs/_static/exercises 2026-02-11T13:11:02,757 creating build/bdist.linux-armv7l/wheel/test 2026-02-11T13:11:02,758 creating build/bdist.linux-armv7l/wheel/test/simulation 2026-02-11T13:11:02,759 copying build/lib/test/simulation/__init__.py -> build/bdist.linux-armv7l/wheel/./test/simulation 2026-02-11T13:11:02,761 copying build/lib/test/simulation/test_umbrellawindow.py -> build/bdist.linux-armv7l/wheel/./test/simulation 2026-02-11T13:11:02,762 copying build/lib/test/simulation/test_pathsimulation.py -> build/bdist.linux-armv7l/wheel/./test/simulation 2026-02-11T13:11:02,765 copying build/lib/test/simulation/test_simulation_task.py -> build/bdist.linux-armv7l/wheel/./test/simulation 2026-02-11T13:11:02,767 copying build/lib/test/simulation/test_mdsimulation.py -> build/bdist.linux-armv7l/wheel/./test/simulation 2026-02-11T13:11:02,770 copying build/lib/test/simulation/help.py -> build/bdist.linux-armv7l/wheel/./test/simulation 2026-02-11T13:11:02,771 copying build/lib/test/simulation/test_simulation.py -> build/bdist.linux-armv7l/wheel/./test/simulation 2026-02-11T13:11:02,773 copying build/lib/test/__init__.py -> build/bdist.linux-armv7l/wheel/./test 2026-02-11T13:11:02,776 creating build/bdist.linux-armv7l/wheel/test/testing 2026-02-11T13:11:02,777 copying build/lib/test/testing/test_compare.py -> build/bdist.linux-armv7l/wheel/./test/testing 2026-02-11T13:11:02,779 copying build/lib/test/testing/test_helpers.py -> build/bdist.linux-armv7l/wheel/./test/testing 2026-02-11T13:11:02,781 copying build/lib/test/testing/__init__.py -> build/bdist.linux-armv7l/wheel/./test/testing 2026-02-11T13:11:02,783 creating build/bdist.linux-armv7l/wheel/test/analysis 2026-02-11T13:11:02,784 copying build/lib/test/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/./test/analysis 2026-02-11T13:11:02,786 copying build/lib/test/analysis/test_analysis.py -> build/bdist.linux-armv7l/wheel/./test/analysis 2026-02-11T13:11:02,788 copying build/lib/test/analysis/test_energy_analysis.py -> build/bdist.linux-armv7l/wheel/./test/analysis 2026-02-11T13:11:02,789 copying build/lib/test/analysis/test_flux_analysis.py -> build/bdist.linux-armv7l/wheel/./test/analysis 2026-02-11T13:11:02,792 copying build/lib/test/analysis/help.py -> build/bdist.linux-armv7l/wheel/./test/analysis 2026-02-11T13:11:02,793 copying build/lib/test/analysis/test_orderp_analysis.py -> build/bdist.linux-armv7l/wheel/./test/analysis 2026-02-11T13:11:02,795 copying build/lib/test/analysis/test_path_analysis.py -> build/bdist.linux-armv7l/wheel/./test/analysis 2026-02-11T13:11:02,798 creating build/bdist.linux-armv7l/wheel/test/core 2026-02-11T13:11:02,799 copying build/lib/test/core/test_path.py -> build/bdist.linux-armv7l/wheel/./test/core 2026-02-11T13:11:02,802 copying build/lib/test/core/test_system.py -> build/bdist.linux-armv7l/wheel/./test/core 2026-02-11T13:11:02,805 copying build/lib/test/core/test_common.py -> build/bdist.linux-armv7l/wheel/./test/core 2026-02-11T13:11:02,808 copying build/lib/test/core/test_pathensemble.py -> build/bdist.linux-armv7l/wheel/./test/core 2026-02-11T13:11:02,810 copying build/lib/test/core/__init__.py -> build/bdist.linux-armv7l/wheel/./test/core 2026-02-11T13:11:02,812 copying build/lib/test/core/fooengine.py -> build/bdist.linux-armv7l/wheel/./test/core 2026-02-11T13:11:02,814 copying build/lib/test/core/test_particlefunctions.py -> build/bdist.linux-armv7l/wheel/./test/core 2026-02-11T13:11:02,816 copying build/lib/test/core/test_montecarlo.py -> build/bdist.linux-armv7l/wheel/./test/core 2026-02-11T13:11:02,818 copying build/lib/test/core/test_retis.py -> build/bdist.linux-armv7l/wheel/./test/core 2026-02-11T13:11:02,821 copying build/lib/test/core/test_units.py -> build/bdist.linux-armv7l/wheel/./test/core 2026-02-11T13:11:02,823 copying build/lib/test/core/test_random.py -> build/bdist.linux-armv7l/wheel/./test/core 2026-02-11T13:11:02,825 copying build/lib/test/core/test_particles.py -> build/bdist.linux-armv7l/wheel/./test/core 2026-02-11T13:11:02,828 copying build/lib/test/core/help.py -> build/bdist.linux-armv7l/wheel/./test/core 2026-02-11T13:11:02,831 copying build/lib/test/core/test_box.py -> build/bdist.linux-armv7l/wheel/./test/core 2026-02-11T13:11:02,833 copying build/lib/test/core/test_tis.py -> build/bdist.linux-armv7l/wheel/./test/core 2026-02-11T13:11:02,837 creating build/bdist.linux-armv7l/wheel/test/bin 2026-02-11T13:11:02,837 copying build/lib/test/bin/__init__.py -> build/bdist.linux-armv7l/wheel/./test/bin 2026-02-11T13:11:02,839 copying build/lib/test/bin/test_pyretisrun.py -> build/bdist.linux-armv7l/wheel/./test/bin 2026-02-11T13:11:02,841 copying build/lib/test/bin/help.py -> build/bdist.linux-armv7l/wheel/./test/bin 2026-02-11T13:11:02,843 copying build/lib/test/bin/test_pyvisa.py -> build/bdist.linux-armv7l/wheel/./test/bin 2026-02-11T13:11:02,845 copying build/lib/test/bin/test_pyretisanalyse.py -> build/bdist.linux-armv7l/wheel/./test/bin 2026-02-11T13:11:02,848 creating build/bdist.linux-armv7l/wheel/test/initiation 2026-02-11T13:11:02,849 copying build/lib/test/initiation/__init__.py -> build/bdist.linux-armv7l/wheel/./test/initiation 2026-02-11T13:11:02,851 copying build/lib/test/initiation/test_initiate_kick.py -> build/bdist.linux-armv7l/wheel/./test/initiation 2026-02-11T13:11:02,853 copying build/lib/test/initiation/test_initiate_restart.py -> build/bdist.linux-armv7l/wheel/./test/initiation 2026-02-11T13:11:02,856 creating build/bdist.linux-armv7l/wheel/test/initiation/gromacs 2026-02-11T13:11:02,858 copying build/lib/test/initiation/gromacs/mockgmx.py -> build/bdist.linux-armv7l/wheel/./test/initiation/gromacs 2026-02-11T13:11:02,860 copying build/lib/test/initiation/gromacs/orderp.py -> build/bdist.linux-armv7l/wheel/./test/initiation/gromacs 2026-02-11T13:11:02,862 copying build/lib/test/initiation/gromacs/mockmdrun.py -> build/bdist.linux-armv7l/wheel/./test/initiation/gromacs 2026-02-11T13:11:02,865 copying build/lib/test/initiation/test_initiation.py -> build/bdist.linux-armv7l/wheel/./test/initiation 2026-02-11T13:11:02,867 copying build/lib/test/initiation/help.py -> build/bdist.linux-armv7l/wheel/./test/initiation 2026-02-11T13:11:02,870 creating build/bdist.linux-armv7l/wheel/test/initiation/cp2k 2026-02-11T13:11:02,871 copying build/lib/test/initiation/cp2k/mockcp2k.py -> build/bdist.linux-armv7l/wheel/./test/initiation/cp2k 2026-02-11T13:11:02,874 copying build/lib/test/initiation/test_initiate_load.py -> build/bdist.linux-armv7l/wheel/./test/initiation 2026-02-11T13:11:02,879 creating build/bdist.linux-armv7l/wheel/test/engines 2026-02-11T13:11:02,880 copying build/lib/test/engines/aprogram.py -> build/bdist.linux-armv7l/wheel/./test/engines 2026-02-11T13:11:02,883 copying build/lib/test/engines/__init__.py -> build/bdist.linux-armv7l/wheel/./test/engines 2026-02-11T13:11:02,884 copying build/lib/test/engines/mockgmx.py -> build/bdist.linux-armv7l/wheel/./test/engines 2026-02-11T13:11:02,887 copying build/lib/test/engines/test_gromacs2.py -> build/bdist.linux-armv7l/wheel/./test/engines 2026-02-11T13:11:02,890 copying build/lib/test/engines/mockcp2k.py -> build/bdist.linux-armv7l/wheel/./test/engines 2026-02-11T13:11:02,893 copying build/lib/test/engines/test_lammps.py -> build/bdist.linux-armv7l/wheel/./test/engines 2026-02-11T13:11:02,896 copying build/lib/test/engines/test_openmm.py -> build/bdist.linux-armv7l/wheel/./test/engines 2026-02-11T13:11:02,898 copying build/lib/test/engines/test_cp2k.py -> build/bdist.linux-armv7l/wheel/./test/engines 2026-02-11T13:11:02,901 copying build/lib/test/engines/test_gromacs.py -> build/bdist.linux-armv7l/wheel/./test/engines 2026-02-11T13:11:02,904 creating build/bdist.linux-armv7l/wheel/test/engines/test_helpers 2026-02-11T13:11:02,906 copying build/lib/test/engines/test_helpers/test_helpers.py -> build/bdist.linux-armv7l/wheel/./test/engines/test_helpers 2026-02-11T13:11:02,908 copying build/lib/test/engines/test_helpers/__init__.py -> build/bdist.linux-armv7l/wheel/./test/engines/test_helpers 2026-02-11T13:11:02,910 copying build/lib/test/engines/mockmdrun.py -> build/bdist.linux-armv7l/wheel/./test/engines 2026-02-11T13:11:02,912 copying build/lib/test/engines/mockmdrun2.py -> build/bdist.linux-armv7l/wheel/./test/engines 2026-02-11T13:11:02,914 copying build/lib/test/engines/test_engines.py -> build/bdist.linux-armv7l/wheel/./test/engines 2026-02-11T13:11:02,917 copying build/lib/test/engines/mocklammps.py -> build/bdist.linux-armv7l/wheel/./test/engines 2026-02-11T13:11:02,919 copying build/lib/test/engines/test_internalengine.py -> build/bdist.linux-armv7l/wheel/./test/engines 2026-02-11T13:11:02,922 copying build/lib/test/engines/test_externalengine.py -> build/bdist.linux-armv7l/wheel/./test/engines 2026-02-11T13:11:02,926 creating build/bdist.linux-armv7l/wheel/test/tools 2026-02-11T13:11:02,927 copying build/lib/test/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./test/tools 2026-02-11T13:11:02,929 copying build/lib/test/tools/test_lattice.py -> build/bdist.linux-armv7l/wheel/./test/tools 2026-02-11T13:11:02,931 copying build/lib/test/tools/test_recalculate.py -> build/bdist.linux-armv7l/wheel/./test/tools 2026-02-11T13:11:02,934 creating build/bdist.linux-armv7l/wheel/test/pyvisa 2026-02-11T13:11:02,936 copying build/lib/test/pyvisa/test_common.py -> build/bdist.linux-armv7l/wheel/./test/pyvisa 2026-02-11T13:11:02,938 copying build/lib/test/pyvisa/__init__.py -> build/bdist.linux-armv7l/wheel/./test/pyvisa 2026-02-11T13:11:02,940 copying build/lib/test/pyvisa/test_plotting.py -> build/bdist.linux-armv7l/wheel/./test/pyvisa 2026-02-11T13:11:02,942 copying build/lib/test/pyvisa/test_orderparam_density.py -> build/bdist.linux-armv7l/wheel/./test/pyvisa 2026-02-11T13:11:02,945 copying build/lib/test/pyvisa/test_statistical_methods.py -> build/bdist.linux-armv7l/wheel/./test/pyvisa 2026-02-11T13:11:02,948 creating build/bdist.linux-armv7l/wheel/test/orderparameter 2026-02-11T13:11:02,949 copying build/lib/test/orderparameter/__init__.py -> build/bdist.linux-armv7l/wheel/./test/orderparameter 2026-02-11T13:11:02,951 copying build/lib/test/orderparameter/test_orderparameter.py -> build/bdist.linux-armv7l/wheel/./test/orderparameter 2026-02-11T13:11:02,955 creating build/bdist.linux-armv7l/wheel/test/forcefield 2026-02-11T13:11:02,956 copying build/lib/test/forcefield/test_wcapair.py -> build/bdist.linux-armv7l/wheel/./test/forcefield 2026-02-11T13:11:02,959 copying build/lib/test/forcefield/__init__.py -> build/bdist.linux-armv7l/wheel/./test/forcefield 2026-02-11T13:11:02,961 copying build/lib/test/forcefield/test_pairpotentials.py -> build/bdist.linux-armv7l/wheel/./test/forcefield 2026-02-11T13:11:02,963 copying build/lib/test/forcefield/test_forcefield.py -> build/bdist.linux-armv7l/wheel/./test/forcefield 2026-02-11T13:11:02,966 copying build/lib/test/forcefield/test_potentials.py -> build/bdist.linux-armv7l/wheel/./test/forcefield 2026-02-11T13:11:02,968 copying build/lib/test/forcefield/test_potential.py -> build/bdist.linux-armv7l/wheel/./test/forcefield 2026-02-11T13:11:02,970 copying build/lib/test/forcefield/test_lennardjones.py -> build/bdist.linux-armv7l/wheel/./test/forcefield 2026-02-11T13:11:02,973 creating build/bdist.linux-armv7l/wheel/test/inout 2026-02-11T13:11:02,975 copying build/lib/test/inout/test_gromacsio.py -> build/bdist.linux-armv7l/wheel/./test/inout 2026-02-11T13:11:02,978 copying build/lib/test/inout/test_formatters_table.py -> build/bdist.linux-armv7l/wheel/./test/inout 2026-02-11T13:11:02,980 copying build/lib/test/inout/test_traj_formatters.py -> build/bdist.linux-armv7l/wheel/./test/inout 2026-02-11T13:11:02,983 copying build/lib/test/inout/test_settings.py -> build/bdist.linux-armv7l/wheel/./test/inout 2026-02-11T13:11:02,987 copying build/lib/test/inout/test_common.py -> build/bdist.linux-armv7l/wheel/./test/inout 2026-02-11T13:11:02,989 copying build/lib/test/inout/__init__.py -> build/bdist.linux-armv7l/wheel/./test/inout 2026-02-11T13:11:02,991 copying build/lib/test/inout/fooorderparameter.py -> build/bdist.linux-armv7l/wheel/./test/inout 2026-02-11T13:11:02,993 copying build/lib/test/inout/fooengine.py -> build/bdist.linux-armv7l/wheel/./test/inout 2026-02-11T13:11:02,995 copying build/lib/test/inout/test_cp2kio.py -> build/bdist.linux-armv7l/wheel/./test/inout 2026-02-11T13:11:02,998 copying build/lib/test/inout/test_fileio.py -> build/bdist.linux-armv7l/wheel/./test/inout 2026-02-11T13:11:03,001 copying build/lib/test/inout/test_screen.py -> build/bdist.linux-armv7l/wheel/./test/inout 2026-02-11T13:11:03,004 copying build/lib/test/inout/test_createsystem.py -> build/bdist.linux-armv7l/wheel/./test/inout 2026-02-11T13:11:03,006 copying build/lib/test/inout/test_xyzio.py -> build/bdist.linux-armv7l/wheel/./test/inout 2026-02-11T13:11:03,009 copying build/lib/test/inout/test_checker.py -> build/bdist.linux-armv7l/wheel/./test/inout 2026-02-11T13:11:03,011 copying build/lib/test/inout/test_restart.py -> build/bdist.linux-armv7l/wheel/./test/inout 2026-02-11T13:11:03,014 copying build/lib/test/inout/test_setup_common.py -> build/bdist.linux-armv7l/wheel/./test/inout 2026-02-11T13:11:03,017 copying build/lib/test/inout/test_createsimulation.py -> build/bdist.linux-armv7l/wheel/./test/inout 2026-02-11T13:11:03,020 copying build/lib/test/inout/test_formatters.py -> build/bdist.linux-armv7l/wheel/./test/inout 2026-02-11T13:11:03,025 copying build/lib/test/inout/help.py -> build/bdist.linux-armv7l/wheel/./test/inout 2026-02-11T13:11:03,028 copying build/lib/test/inout/test_simulationio.py -> build/bdist.linux-armv7l/wheel/./test/inout 2026-02-11T13:11:03,032 copying build/lib/test/inout/test_archive.py -> build/bdist.linux-armv7l/wheel/./test/inout 2026-02-11T13:11:03,035 copying build/lib/test/inout/foopotential.py -> build/bdist.linux-armv7l/wheel/./test/inout 2026-02-11T13:11:03,037 copying build/lib/test/inout/test_reports.py -> build/bdist.linux-armv7l/wheel/./test/inout 2026-02-11T13:11:03,041 creating build/bdist.linux-armv7l/wheel/devtools 2026-02-11T13:11:03,043 copying build/lib/devtools/run_linting.py -> build/bdist.linux-armv7l/wheel/./devtools 2026-02-11T13:11:03,048 copying build/lib/devtools/update_copyright.py -> build/bdist.linux-armv7l/wheel/./devtools 2026-02-11T13:11:03,052 creating build/bdist.linux-armv7l/wheel/devtools/docs 2026-02-11T13:11:03,053 copying build/lib/devtools/docs/mpl_object.py -> build/bdist.linux-armv7l/wheel/./devtools/docs 2026-02-11T13:11:03,057 copying build/lib/devtools/docs/make_table.py -> build/bdist.linux-armv7l/wheel/./devtools/docs 2026-02-11T13:11:03,059 copying build/lib/devtools/docs/check_api_docs.py -> build/bdist.linux-armv7l/wheel/./devtools/docs 2026-02-11T13:11:03,063 creating build/bdist.linux-armv7l/wheel/examples 2026-02-11T13:11:03,065 creating build/bdist.linux-armv7l/wheel/examples/umbrella_sampling 2026-02-11T13:11:03,068 creating build/bdist.linux-armv7l/wheel/examples/umbrella_sampling/fancy_movie 2026-02-11T13:11:03,069 copying build/lib/examples/umbrella_sampling/fancy_movie/umbrella_sampling_mc_fancy_movie.py -> build/bdist.linux-armv7l/wheel/./examples/umbrella_sampling/fancy_movie 2026-02-11T13:11:03,074 copying build/lib/examples/umbrella_sampling/umbrella_sampling_mc.py -> build/bdist.linux-armv7l/wheel/./examples/umbrella_sampling 2026-02-11T13:11:03,079 copying build/lib/examples/umbrella_sampling/umbrella_sampling_mc_movie.py -> build/bdist.linux-armv7l/wheel/./examples/umbrella_sampling 2026-02-11T13:11:03,296 creating build/bdist.linux-armv7l/wheel/examples/extending 2026-02-11T13:11:03,299 creating build/bdist.linux-armv7l/wheel/examples/extending/order-parameter 2026-02-11T13:11:03,302 copying build/lib/examples/extending/order-parameter/orderparameter1.py -> build/bdist.linux-armv7l/wheel/./examples/extending/order-parameter 2026-02-11T13:11:03,306 creating build/bdist.linux-armv7l/wheel/examples/extending/integrator-vv 2026-02-11T13:11:03,308 creating build/bdist.linux-armv7l/wheel/examples/extending/integrator-vv/c 2026-02-11T13:11:03,311 copying build/lib/examples/extending/integrator-vv/c/setup.py -> build/bdist.linux-armv7l/wheel/./examples/extending/integrator-vv/c 2026-02-11T13:11:03,314 copying build/lib/examples/extending/integrator-vv/c/test_vvintegrator.py -> build/bdist.linux-armv7l/wheel/./examples/extending/integrator-vv/c 2026-02-11T13:11:03,318 copying build/lib/examples/extending/integrator-vv/c/md_nve.py -> build/bdist.linux-armv7l/wheel/./examples/extending/integrator-vv/c 2026-02-11T13:11:03,321 copying build/lib/examples/extending/integrator-vv/c/vvintegratorc.py -> build/bdist.linux-armv7l/wheel/./examples/extending/integrator-vv/c 2026-02-11T13:11:03,326 creating build/bdist.linux-armv7l/wheel/examples/extending/integrator-vv/fortran 2026-02-11T13:11:03,327 copying build/lib/examples/extending/integrator-vv/fortran/vvintegratorf.py -> build/bdist.linux-armv7l/wheel/./examples/extending/integrator-vv/fortran 2026-02-11T13:11:03,330 copying build/lib/examples/extending/integrator-vv/fortran/test_vvintegrator.py -> build/bdist.linux-armv7l/wheel/./examples/extending/integrator-vv/fortran 2026-02-11T13:11:03,333 copying build/lib/examples/extending/integrator-vv/fortran/md_nve.py -> build/bdist.linux-armv7l/wheel/./examples/extending/integrator-vv/fortran 2026-02-11T13:11:03,337 creating build/bdist.linux-armv7l/wheel/examples/extending/integrator-langevin 2026-02-11T13:11:03,338 copying build/lib/examples/extending/integrator-langevin/vvintegratorf.py -> build/bdist.linux-armv7l/wheel/./examples/extending/integrator-langevin 2026-02-11T13:11:03,342 copying build/lib/examples/extending/integrator-langevin/test_random.py -> build/bdist.linux-armv7l/wheel/./examples/extending/integrator-langevin 2026-02-11T13:11:03,345 creating build/bdist.linux-armv7l/wheel/examples/extending/lennard-jones 2026-02-11T13:11:03,347 copying build/lib/examples/extending/lennard-jones/plot_results.py -> build/bdist.linux-armv7l/wheel/./examples/extending/lennard-jones 2026-02-11T13:11:03,350 copying build/lib/examples/extending/lennard-jones/time_lj_numba.py -> build/bdist.linux-armv7l/wheel/./examples/extending/lennard-jones 2026-02-11T13:11:03,354 creating build/bdist.linux-armv7l/wheel/examples/extending/lennard-jones/fortran-pointer 2026-02-11T13:11:03,355 copying build/lib/examples/extending/lennard-jones/fortran-pointer/time_ljforces.py -> build/bdist.linux-armv7l/wheel/./examples/extending/lennard-jones/fortran-pointer 2026-02-11T13:11:03,358 copying build/lib/examples/extending/lennard-jones/fortran-pointer/test_ljforces.py -> build/bdist.linux-armv7l/wheel/./examples/extending/lennard-jones/fortran-pointer 2026-02-11T13:11:03,361 copying build/lib/examples/extending/lennard-jones/fortran-pointer/ljpotentialfp.py -> build/bdist.linux-armv7l/wheel/./examples/extending/lennard-jones/fortran-pointer 2026-02-11T13:11:03,365 copying build/lib/examples/extending/lennard-jones/fortran-pointer/md_nve.py -> build/bdist.linux-armv7l/wheel/./examples/extending/lennard-jones/fortran-pointer 2026-02-11T13:11:03,367 copying build/lib/examples/extending/lennard-jones/time_lj_python.py -> build/bdist.linux-armv7l/wheel/./examples/extending/lennard-jones 2026-02-11T13:11:03,371 creating build/bdist.linux-armv7l/wheel/examples/extending/lennard-jones/omp-potential 2026-02-11T13:11:03,372 copying build/lib/examples/extending/lennard-jones/omp-potential/plot_results.py -> build/bdist.linux-armv7l/wheel/./examples/extending/lennard-jones/omp-potential 2026-02-11T13:11:03,375 copying build/lib/examples/extending/lennard-jones/omp-potential/time_ljforces.py -> build/bdist.linux-armv7l/wheel/./examples/extending/lennard-jones/omp-potential 2026-02-11T13:11:03,378 copying build/lib/examples/extending/lennard-jones/omp-potential/test_ljforces.py -> build/bdist.linux-armv7l/wheel/./examples/extending/lennard-jones/omp-potential 2026-02-11T13:11:03,381 copying build/lib/examples/extending/lennard-jones/omp-potential/ljpotentialfp.py -> build/bdist.linux-armv7l/wheel/./examples/extending/lennard-jones/omp-potential 2026-02-11T13:11:03,384 copying build/lib/examples/extending/lennard-jones/time_lj_numpy.py -> build/bdist.linux-armv7l/wheel/./examples/extending/lennard-jones 2026-02-11T13:11:03,387 creating build/bdist.linux-armv7l/wheel/examples/extending/lennard-jones/c 2026-02-11T13:11:03,389 copying build/lib/examples/extending/lennard-jones/c/time_ljforces.py -> build/bdist.linux-armv7l/wheel/./examples/extending/lennard-jones/c 2026-02-11T13:11:03,392 copying build/lib/examples/extending/lennard-jones/c/test_ljforces.py -> build/bdist.linux-armv7l/wheel/./examples/extending/lennard-jones/c 2026-02-11T13:11:03,395 copying build/lib/examples/extending/lennard-jones/c/setup.py -> build/bdist.linux-armv7l/wheel/./examples/extending/lennard-jones/c 2026-02-11T13:11:03,397 copying build/lib/examples/extending/lennard-jones/c/ljpotentialc.py -> build/bdist.linux-armv7l/wheel/./examples/extending/lennard-jones/c 2026-02-11T13:11:03,400 copying build/lib/examples/extending/lennard-jones/c/md_nve.py -> build/bdist.linux-armv7l/wheel/./examples/extending/lennard-jones/c 2026-02-11T13:11:03,404 creating build/bdist.linux-armv7l/wheel/examples/extending/lennard-jones/fortran 2026-02-11T13:11:03,405 copying build/lib/examples/extending/lennard-jones/fortran/ljpotentialf.py -> build/bdist.linux-armv7l/wheel/./examples/extending/lennard-jones/fortran 2026-02-11T13:11:03,408 copying build/lib/examples/extending/lennard-jones/fortran/time_ljforces.py -> build/bdist.linux-armv7l/wheel/./examples/extending/lennard-jones/fortran 2026-02-11T13:11:03,411 copying build/lib/examples/extending/lennard-jones/fortran/test_ljforces.py -> build/bdist.linux-armv7l/wheel/./examples/extending/lennard-jones/fortran 2026-02-11T13:11:03,414 copying build/lib/examples/extending/lennard-jones/fortran/md_nve.py -> build/bdist.linux-armv7l/wheel/./examples/extending/lennard-jones/fortran 2026-02-11T13:11:03,417 creating build/bdist.linux-armv7l/wheel/examples/molecular_dynamics 2026-02-11T13:11:03,420 creating build/bdist.linux-armv7l/wheel/examples/molecular_dynamics/md_wca 2026-02-11T13:11:03,421 copying build/lib/examples/molecular_dynamics/md_wca/md_movie_2d_wca.py -> build/bdist.linux-armv7l/wheel/./examples/molecular_dynamics/md_wca 2026-02-11T13:11:03,425 creating build/bdist.linux-armv7l/wheel/examples/molecular_dynamics/md_nve 2026-02-11T13:11:03,427 creating build/bdist.linux-armv7l/wheel/examples/molecular_dynamics/md_nve/real_units 2026-02-11T13:11:03,428 copying build/lib/examples/molecular_dynamics/md_nve/real_units/compare.py -> build/bdist.linux-armv7l/wheel/./examples/molecular_dynamics/md_nve/real_units 2026-02-11T13:11:03,430 copying build/lib/examples/molecular_dynamics/md_nve/md_nve_plain.py -> build/bdist.linux-armv7l/wheel/./examples/molecular_dynamics/md_nve 2026-02-11T13:11:03,432 copying build/lib/examples/molecular_dynamics/md_nve/md_nve.py -> build/bdist.linux-armv7l/wheel/./examples/molecular_dynamics/md_nve 2026-02-11T13:11:03,434 creating build/bdist.linux-armv7l/wheel/examples/molecular_dynamics/md_nve/forward_backward 2026-02-11T13:11:03,436 creating build/bdist.linux-armv7l/wheel/examples/molecular_dynamics/md_nve/forward_backward/external 2026-02-11T13:11:03,437 copying build/lib/examples/molecular_dynamics/md_nve/forward_backward/external/md_forward_backward_ext.py -> build/bdist.linux-armv7l/wheel/./examples/molecular_dynamics/md_nve/forward_backward/external 2026-02-11T13:11:03,440 creating build/bdist.linux-armv7l/wheel/examples/molecular_dynamics/md_nve/forward_backward/external/cpython3 2026-02-11T13:11:03,441 copying build/lib/examples/molecular_dynamics/md_nve/forward_backward/external/cpython3/setup.py -> build/bdist.linux-armv7l/wheel/./examples/molecular_dynamics/md_nve/forward_backward/external/cpython3 2026-02-11T13:11:03,443 copying build/lib/examples/molecular_dynamics/md_nve/forward_backward/external/cpython3/ljpotentialc.py -> build/bdist.linux-armv7l/wheel/./examples/molecular_dynamics/md_nve/forward_backward/external/cpython3 2026-02-11T13:11:03,445 creating build/bdist.linux-armv7l/wheel/examples/molecular_dynamics/md_nve/forward_backward/external/fortran 2026-02-11T13:11:03,446 copying build/lib/examples/molecular_dynamics/md_nve/forward_backward/external/fortran/ljpotentialf.py -> build/bdist.linux-armv7l/wheel/./examples/molecular_dynamics/md_nve/forward_backward/external/fortran 2026-02-11T13:11:03,449 copying build/lib/examples/molecular_dynamics/md_nve/forward_backward/md_forward_backward.py -> build/bdist.linux-armv7l/wheel/./examples/molecular_dynamics/md_nve/forward_backward 2026-02-11T13:11:03,451 creating build/bdist.linux-armv7l/wheel/examples/molecular_dynamics/md_nve/from_settings 2026-02-11T13:11:03,452 copying build/lib/examples/molecular_dynamics/md_nve/from_settings/plot_thermo.py -> build/bdist.linux-armv7l/wheel/./examples/molecular_dynamics/md_nve/from_settings 2026-02-11T13:11:03,454 copying build/lib/examples/molecular_dynamics/md_nve/from_settings/plot_bokeh.py -> build/bdist.linux-armv7l/wheel/./examples/molecular_dynamics/md_nve/from_settings 2026-02-11T13:11:03,456 creating build/bdist.linux-armv7l/wheel/examples/molecular_dynamics/new_integrator 2026-02-11T13:11:03,457 copying build/lib/examples/molecular_dynamics/new_integrator/myintegrator.py -> build/bdist.linux-armv7l/wheel/./examples/molecular_dynamics/new_integrator 2026-02-11T13:11:03,459 copying build/lib/examples/molecular_dynamics/new_integrator/run_pendulum.py -> build/bdist.linux-armv7l/wheel/./examples/molecular_dynamics/new_integrator 2026-02-11T13:11:03,461 copying build/lib/examples/molecular_dynamics/new_integrator/doublependulum.py -> build/bdist.linux-armv7l/wheel/./examples/molecular_dynamics/new_integrator 2026-02-11T13:11:03,464 creating build/bdist.linux-armv7l/wheel/examples/molecular_dynamics/md_movie_2d 2026-02-11T13:11:03,465 copying build/lib/examples/molecular_dynamics/md_movie_2d/md_movie_2d.py -> build/bdist.linux-armv7l/wheel/./examples/molecular_dynamics/md_movie_2d 2026-02-11T13:11:03,468 creating build/bdist.linux-armv7l/wheel/examples/other 2026-02-11T13:11:03,469 creating build/bdist.linux-armv7l/wheel/examples/other/particle_swarm 2026-02-11T13:11:03,470 copying build/lib/examples/other/particle_swarm/psoengine.py -> build/bdist.linux-armv7l/wheel/./examples/other/particle_swarm 2026-02-11T13:11:03,472 copying build/lib/examples/other/particle_swarm/pso_run.py -> build/bdist.linux-armv7l/wheel/./examples/other/particle_swarm 2026-02-11T13:11:03,474 copying build/lib/examples/other/particle_swarm/ackley.py -> build/bdist.linux-armv7l/wheel/./examples/other/particle_swarm 2026-02-11T13:11:03,477 creating build/bdist.linux-armv7l/wheel/examples/test 2026-02-11T13:11:03,478 creating build/bdist.linux-armv7l/wheel/examples/test/test-lammps 2026-02-11T13:11:03,480 creating build/bdist.linux-armv7l/wheel/examples/test/test-lammps/test-dump-phasepoint 2026-02-11T13:11:03,481 copying build/lib/examples/test/test-lammps/test-dump-phasepoint/test_lammps.py -> build/bdist.linux-armv7l/wheel/./examples/test/test-lammps/test-dump-phasepoint 2026-02-11T13:11:03,484 creating build/bdist.linux-armv7l/wheel/examples/test/test-lammps/test-integrate 2026-02-11T13:11:03,485 copying build/lib/examples/test/test-lammps/test-integrate/plotting.py -> build/bdist.linux-armv7l/wheel/./examples/test/test-lammps/test-integrate 2026-02-11T13:11:03,487 copying build/lib/examples/test/test-lammps/test-integrate/test_lammps.py -> build/bdist.linux-armv7l/wheel/./examples/test/test-lammps/test-integrate 2026-02-11T13:11:03,490 creating build/bdist.linux-armv7l/wheel/examples/test/test-lammps/test-propagate 2026-02-11T13:11:03,491 copying build/lib/examples/test/test-lammps/test-propagate/plotting.py -> build/bdist.linux-armv7l/wheel/./examples/test/test-lammps/test-propagate 2026-02-11T13:11:03,493 copying build/lib/examples/test/test-lammps/test-propagate/test_lammps.py -> build/bdist.linux-armv7l/wheel/./examples/test/test-lammps/test-propagate 2026-02-11T13:11:03,495 creating build/bdist.linux-armv7l/wheel/examples/test/test-lammps/lammps_testing 2026-02-11T13:11:03,496 copying build/lib/examples/test/test-lammps/lammps_testing/plotting.py -> build/bdist.linux-armv7l/wheel/./examples/test/test-lammps/lammps_testing 2026-02-11T13:11:03,499 creating build/bdist.linux-armv7l/wheel/examples/test/test-lammps/test-modify-velocities 2026-02-11T13:11:03,499 copying build/lib/examples/test/test-lammps/test-modify-velocities/test_lammps.py -> build/bdist.linux-armv7l/wheel/./examples/test/test-lammps/test-modify-velocities 2026-02-11T13:11:03,502 creating build/bdist.linux-armv7l/wheel/examples/test/test-cp2k 2026-02-11T13:11:03,504 creating build/bdist.linux-armv7l/wheel/examples/test/test-cp2k/test-cp2k 2026-02-11T13:11:03,505 copying build/lib/examples/test/test-cp2k/test-cp2k/test_cp2k_step.py -> build/bdist.linux-armv7l/wheel/./examples/test/test-cp2k/test-cp2k 2026-02-11T13:11:03,507 copying build/lib/examples/test/test-cp2k/test-cp2k/test_cp2k.py -> build/bdist.linux-armv7l/wheel/./examples/test/test-cp2k/test-cp2k 2026-02-11T13:11:03,510 creating build/bdist.linux-armv7l/wheel/examples/test/test-cp2k/test-integrate 2026-02-11T13:11:03,511 copying build/lib/examples/test/test-cp2k/test-integrate/compare_cp2k_energies.py -> build/bdist.linux-armv7l/wheel/./examples/test/test-cp2k/test-integrate 2026-02-11T13:11:03,513 copying build/lib/examples/test/test-cp2k/test-integrate/make_inp.py -> build/bdist.linux-armv7l/wheel/./examples/test/test-cp2k/test-integrate 2026-02-11T13:11:03,514 copying build/lib/examples/test/test-cp2k/test-integrate/compare_energies.py -> build/bdist.linux-armv7l/wheel/./examples/test/test-cp2k/test-integrate 2026-02-11T13:11:03,517 creating build/bdist.linux-armv7l/wheel/examples/test/test-cp2k/test-retis-load 2026-02-11T13:11:03,518 copying build/lib/examples/test/test-cp2k/test-retis-load/compare.py -> build/bdist.linux-armv7l/wheel/./examples/test/test-cp2k/test-retis-load 2026-02-11T13:11:03,520 creating build/bdist.linux-armv7l/wheel/examples/test/test-pyvisa 2026-02-11T13:11:03,522 creating build/bdist.linux-armv7l/wheel/examples/test/test-pyvisa/lib 2026-02-11T13:11:03,523 copying build/lib/examples/test/test-pyvisa/lib/compare_order.py -> build/bdist.linux-armv7l/wheel/./examples/test/test-pyvisa/lib 2026-02-11T13:11:03,525 copying build/lib/examples/test/test-pyvisa/lib/compare_hdf5.py -> build/bdist.linux-armv7l/wheel/./examples/test/test-pyvisa/lib 2026-02-11T13:11:03,527 creating build/bdist.linux-armv7l/wheel/examples/test/test-internal 2026-02-11T13:11:03,529 creating build/bdist.linux-armv7l/wheel/examples/test/test-internal/partial-path 2026-02-11T13:11:03,530 copying build/lib/examples/test/test-internal/partial-path/compare.py -> build/bdist.linux-armv7l/wheel/./examples/test/test-internal/partial-path 2026-02-11T13:11:03,532 copying build/lib/examples/test/test-internal/partial-path/flat-potential.py -> build/bdist.linux-armv7l/wheel/./examples/test/test-internal/partial-path 2026-02-11T13:11:03,534 creating build/bdist.linux-armv7l/wheel/examples/test/test-internal/tis-multiple 2026-02-11T13:11:03,536 copying build/lib/examples/test/test-internal/tis-multiple/compare.py -> build/bdist.linux-armv7l/wheel/./examples/test/test-internal/tis-multiple 2026-02-11T13:11:03,538 creating build/bdist.linux-armv7l/wheel/examples/test/test-internal/compare-internal-with-lammps 2026-02-11T13:11:03,539 copying build/lib/examples/test/test-internal/compare-internal-with-lammps/run_md_comparison.py -> build/bdist.linux-armv7l/wheel/./examples/test/test-internal/compare-internal-with-lammps 2026-02-11T13:11:03,543 creating build/bdist.linux-armv7l/wheel/examples/test/test-internal/mdflux-restart 2026-02-11T13:11:03,544 copying build/lib/examples/test/test-internal/mdflux-restart/compare.py -> build/bdist.linux-armv7l/wheel/./examples/test/test-internal/mdflux-restart 2026-02-11T13:11:03,547 creating build/bdist.linux-armv7l/wheel/examples/test/test-internal/md-restart 2026-02-11T13:11:03,548 copying build/lib/examples/test/test-internal/md-restart/compare.py -> build/bdist.linux-armv7l/wheel/./examples/test/test-internal/md-restart 2026-02-11T13:11:03,551 creating build/bdist.linux-armv7l/wheel/examples/test/test-internal/retis-ss-wt-wf 2026-02-11T13:11:03,552 copying build/lib/examples/test/test-internal/retis-ss-wt-wf/compare.py -> build/bdist.linux-armv7l/wheel/./examples/test/test-internal/retis-ss-wt-wf 2026-02-11T13:11:03,555 creating build/bdist.linux-armv7l/wheel/examples/test/test-internal/tis-restart 2026-02-11T13:11:03,556 copying build/lib/examples/test/test-internal/tis-restart/compare.py -> build/bdist.linux-armv7l/wheel/./examples/test/test-internal/tis-restart 2026-02-11T13:11:03,559 creating build/bdist.linux-armv7l/wheel/examples/test/test-internal/retis 2026-02-11T13:11:03,560 copying build/lib/examples/test/test-internal/retis/compare.py -> build/bdist.linux-armv7l/wheel/./examples/test/test-internal/retis 2026-02-11T13:11:03,563 creating build/bdist.linux-armv7l/wheel/examples/test/test-gromacs 2026-02-11T13:11:03,565 creating build/bdist.linux-armv7l/wheel/examples/test/test-gromacs/gmx 2026-02-11T13:11:03,566 copying build/lib/examples/test/test-gromacs/gmx/copy_last_path.py -> build/bdist.linux-armv7l/wheel/./examples/test/test-gromacs/gmx 2026-02-11T13:11:03,568 copying build/lib/examples/test/test-gromacs/gmx/merge_files.py -> build/bdist.linux-armv7l/wheel/./examples/test/test-gromacs/gmx 2026-02-11T13:11:03,570 copying build/lib/examples/test/test-gromacs/gmx/gromacs.py -> build/bdist.linux-armv7l/wheel/./examples/test/test-gromacs/gmx 2026-02-11T13:11:03,572 copying build/lib/examples/test/test-gromacs/gmx/compare.py -> build/bdist.linux-armv7l/wheel/./examples/test/test-gromacs/gmx 2026-02-11T13:11:03,574 copying build/lib/examples/test/test-gromacs/gmx/orderp.py -> build/bdist.linux-armv7l/wheel/./examples/test/test-gromacs/gmx 2026-02-11T13:11:03,576 copying build/lib/examples/test/test-gromacs/gmx/copy_restart_files.py -> build/bdist.linux-armv7l/wheel/./examples/test/test-gromacs/gmx 2026-02-11T13:11:03,578 copying build/lib/examples/test/test-gromacs/gmx/make_mdp.py -> build/bdist.linux-armv7l/wheel/./examples/test/test-gromacs/gmx 2026-02-11T13:11:03,580 creating build/bdist.linux-armv7l/wheel/examples/test/test-gromacs/test-retis 2026-02-11T13:11:03,581 copying build/lib/examples/test/test-gromacs/test-retis/compare.py -> build/bdist.linux-armv7l/wheel/./examples/test/test-gromacs/test-retis 2026-02-11T13:11:03,584 creating build/bdist.linux-armv7l/wheel/examples/test/test-gromacs/test-integrate 2026-02-11T13:11:03,585 copying build/lib/examples/test/test-gromacs/test-integrate/compare_energies.py -> build/bdist.linux-armv7l/wheel/./examples/test/test-gromacs/test-integrate 2026-02-11T13:11:03,588 creating build/bdist.linux-armv7l/wheel/examples/test/test-gromacs/test-repptis 2026-02-11T13:11:03,589 copying build/lib/examples/test/test-gromacs/test-repptis/compare.py -> build/bdist.linux-armv7l/wheel/./examples/test/test-gromacs/test-repptis 2026-02-11T13:11:03,592 creating build/bdist.linux-armv7l/wheel/examples/test/test-gromacs/test-load 2026-02-11T13:11:03,594 creating build/bdist.linux-armv7l/wheel/examples/test/test-gromacs/test-load/test-load-sparse 2026-02-11T13:11:03,596 creating build/bdist.linux-armv7l/wheel/examples/test/test-gromacs/test-load/test-load-sparse/load-traj 2026-02-11T13:11:03,597 copying build/lib/examples/test/test-gromacs/test-load/test-load-sparse/load-traj/orderp.py -> build/bdist.linux-armv7l/wheel/./examples/test/test-gromacs/test-load/test-load-sparse/load-traj 2026-02-11T13:11:03,600 creating build/bdist.linux-armv7l/wheel/examples/test/test-gromacs/test-gromacs 2026-02-11T13:11:03,601 copying build/lib/examples/test/test-gromacs/test-gromacs/test_gromacs.py -> build/bdist.linux-armv7l/wheel/./examples/test/test-gromacs/test-gromacs 2026-02-11T13:11:03,604 creating build/bdist.linux-armv7l/wheel/examples/path_sampling 2026-02-11T13:11:03,606 creating build/bdist.linux-armv7l/wheel/examples/path_sampling/gromacs-hydrate 2026-02-11T13:11:03,608 copying build/lib/examples/path_sampling/gromacs-hydrate/test_order.py -> build/bdist.linux-armv7l/wheel/./examples/path_sampling/gromacs-hydrate 2026-02-11T13:11:03,609 copying build/lib/examples/path_sampling/gromacs-hydrate/orderp.py -> build/bdist.linux-armv7l/wheel/./examples/path_sampling/gromacs-hydrate 2026-02-11T13:11:03,612 creating build/bdist.linux-armv7l/wheel/examples/path_sampling/2D-wca 2026-02-11T13:11:03,613 creating build/bdist.linux-armv7l/wheel/examples/path_sampling/2D-wca/low-barrier 2026-02-11T13:11:03,615 creating build/bdist.linux-armv7l/wheel/examples/path_sampling/2D-wca/low-barrier/c-for-python3 2026-02-11T13:11:03,616 copying build/lib/examples/path_sampling/2D-wca/low-barrier/c-for-python3/setup.py -> build/bdist.linux-armv7l/wheel/./examples/path_sampling/2D-wca/low-barrier/c-for-python3 2026-02-11T13:11:03,618 copying build/lib/examples/path_sampling/2D-wca/low-barrier/c-for-python3/orderp.py -> build/bdist.linux-armv7l/wheel/./examples/path_sampling/2D-wca/low-barrier/c-for-python3 2026-02-11T13:11:03,620 copying build/lib/examples/path_sampling/2D-wca/low-barrier/c-for-python3/wcafunctions.py -> build/bdist.linux-armv7l/wheel/./examples/path_sampling/2D-wca/low-barrier/c-for-python3 2026-02-11T13:11:03,623 copying build/lib/examples/path_sampling/2D-wca/low-barrier/c-for-python3/test_wcaforces.py -> build/bdist.linux-armv7l/wheel/./examples/path_sampling/2D-wca/low-barrier/c-for-python3 2026-02-11T13:11:03,625 copying build/lib/examples/path_sampling/2D-wca/low-barrier/orderp.py -> build/bdist.linux-armv7l/wheel/./examples/path_sampling/2D-wca/low-barrier 2026-02-11T13:11:03,627 copying build/lib/examples/path_sampling/2D-wca/low-barrier/generate_initial.py -> build/bdist.linux-armv7l/wheel/./examples/path_sampling/2D-wca/low-barrier 2026-02-11T13:11:03,629 creating build/bdist.linux-armv7l/wheel/examples/path_sampling/2D-wca/high-barrier 2026-02-11T13:11:03,631 creating build/bdist.linux-armv7l/wheel/examples/path_sampling/2D-wca/high-barrier/c-for-python3 2026-02-11T13:11:03,632 copying build/lib/examples/path_sampling/2D-wca/high-barrier/c-for-python3/setup.py -> build/bdist.linux-armv7l/wheel/./examples/path_sampling/2D-wca/high-barrier/c-for-python3 2026-02-11T13:11:03,635 copying build/lib/examples/path_sampling/2D-wca/high-barrier/c-for-python3/test_orderparameter.py -> build/bdist.linux-armv7l/wheel/./examples/path_sampling/2D-wca/high-barrier/c-for-python3 2026-02-11T13:11:03,636 copying build/lib/examples/path_sampling/2D-wca/high-barrier/c-for-python3/wcafunctions.py -> build/bdist.linux-armv7l/wheel/./examples/path_sampling/2D-wca/high-barrier/c-for-python3 2026-02-11T13:11:03,639 copying build/lib/examples/path_sampling/2D-wca/high-barrier/c-for-python3/test_wcaforces.py -> build/bdist.linux-armv7l/wheel/./examples/path_sampling/2D-wca/high-barrier/c-for-python3 2026-02-11T13:11:03,641 copying build/lib/examples/path_sampling/2D-wca/high-barrier/generate_initial.py -> build/bdist.linux-armv7l/wheel/./examples/path_sampling/2D-wca/high-barrier 2026-02-11T13:11:03,643 creating build/bdist.linux-armv7l/wheel/examples/path_sampling/2D-hysteresis 2026-02-11T13:11:03,645 creating build/bdist.linux-armv7l/wheel/examples/path_sampling/2D-hysteresis/retis-y 2026-02-11T13:11:03,646 copying build/lib/examples/path_sampling/2D-hysteresis/retis-y/plot_traj.py -> build/bdist.linux-armv7l/wheel/./examples/path_sampling/2D-hysteresis/retis-y 2026-02-11T13:11:03,649 creating build/bdist.linux-armv7l/wheel/examples/path_sampling/2D-hysteresis/retis-xy 2026-02-11T13:11:03,650 copying build/lib/examples/path_sampling/2D-hysteresis/retis-xy/orderp.py -> build/bdist.linux-armv7l/wheel/./examples/path_sampling/2D-hysteresis/retis-xy 2026-02-11T13:11:03,652 copying build/lib/examples/path_sampling/2D-hysteresis/retis-xy/plot_traj.py -> build/bdist.linux-armv7l/wheel/./examples/path_sampling/2D-hysteresis/retis-xy 2026-02-11T13:11:03,655 copying build/lib/examples/path_sampling/2D-hysteresis/potential.py -> build/bdist.linux-armv7l/wheel/./examples/path_sampling/2D-hysteresis 2026-02-11T13:11:03,657 copying build/lib/examples/path_sampling/2D-hysteresis/order.py -> build/bdist.linux-armv7l/wheel/./examples/path_sampling/2D-hysteresis 2026-02-11T13:11:03,659 creating build/bdist.linux-armv7l/wheel/examples/path_sampling/2D-hysteresis/retis-x 2026-02-11T13:11:03,660 copying build/lib/examples/path_sampling/2D-hysteresis/retis-x/plot_potential.py -> build/bdist.linux-armv7l/wheel/./examples/path_sampling/2D-hysteresis/retis-x 2026-02-11T13:11:03,662 copying build/lib/examples/path_sampling/2D-hysteresis/retis-x/plot_traj.py -> build/bdist.linux-armv7l/wheel/./examples/path_sampling/2D-hysteresis/retis-x 2026-02-11T13:11:03,665 creating build/bdist.linux-armv7l/wheel/examples/path_sampling/2D-hysteresis/interactive 2026-02-11T13:11:03,666 copying build/lib/examples/path_sampling/2D-hysteresis/interactive/interactive-xy.py -> build/bdist.linux-armv7l/wheel/./examples/path_sampling/2D-hysteresis/interactive 2026-02-11T13:11:03,669 copying build/lib/examples/path_sampling/2D-hysteresis/interactive/interactive-y.py -> build/bdist.linux-armv7l/wheel/./examples/path_sampling/2D-hysteresis/interactive 2026-02-11T13:11:03,672 copying build/lib/examples/path_sampling/2D-hysteresis/interactive/interactive-x.py -> build/bdist.linux-armv7l/wheel/./examples/path_sampling/2D-hysteresis/interactive 2026-02-11T13:11:03,675 creating build/bdist.linux-armv7l/wheel/examples/path_sampling/1D-double-well-retis-movie 2026-02-11T13:11:03,676 copying build/lib/examples/path_sampling/1D-double-well-retis-movie/retis.py -> build/bdist.linux-armv7l/wheel/./examples/path_sampling/1D-double-well-retis-movie 2026-02-11T13:11:03,679 copying build/lib/examples/path_sampling/1D-double-well-retis-movie/retis_intro.py -> build/bdist.linux-armv7l/wheel/./examples/path_sampling/1D-double-well-retis-movie 2026-02-11T13:11:03,682 copying build/lib/examples/path_sampling/1D-double-well-retis-movie/retis_movie.py -> build/bdist.linux-armv7l/wheel/./examples/path_sampling/1D-double-well-retis-movie 2026-02-11T13:11:03,684 copying build/lib/examples/path_sampling/1D-double-well-retis-movie/retis_movie_log.py -> build/bdist.linux-armv7l/wheel/./examples/path_sampling/1D-double-well-retis-movie 2026-02-11T13:11:03,687 running install_egg_info 2026-02-11T13:11:03,720 Copying pyretis.egg-info to build/bdist.linux-armv7l/wheel/./pyretis-3.0.0-py3.11.egg-info 2026-02-11T13:11:03,736 running install_scripts 2026-02-11T13:11:03,965 creating build/bdist.linux-armv7l/wheel/pyretis-3.0.0.dist-info/WHEEL 2026-02-11T13:11:03,968 creating '/tmp/pip-wheel-lr7lhte8/pyretis-3.0.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-02-11T13:11:03,971 adding 'devtools/run_linting.py' 2026-02-11T13:11:03,973 adding 'devtools/update_copyright.py' 2026-02-11T13:11:03,975 adding 'devtools/docs/check_api_docs.py' 2026-02-11T13:11:03,977 adding 'devtools/docs/make_table.py' 2026-02-11T13:11:03,979 adding 'devtools/docs/mpl_object.py' 2026-02-11T13:11:03,982 adding 'docs/_static/api/box_example.py' 2026-02-11T13:11:03,984 adding 'docs/_static/api/box_example_create.py' 2026-02-11T13:11:03,985 adding 'docs/_static/api/lattice_example.py' 2026-02-11T13:11:03,987 adding 'docs/_static/engine-examples/leapfrog.py' 2026-02-11T13:11:03,990 adding 'docs/_static/engine-examples/newexternal.py' 2026-02-11T13:11:03,992 adding 'docs/_static/engine-examples/openmm_sim.py' 2026-02-11T13:11:03,994 adding 'docs/_static/examples/examples_mc.py' 2026-02-11T13:11:03,996 adding 'docs/_static/examples/harmonic1d.py' 2026-02-11T13:11:03,998 adding 'docs/_static/examples/md.py' 2026-02-11T13:11:04,000 adding 'docs/_static/examples/orderintro.py' 2026-02-11T13:11:04,001 adding 'docs/_static/examples/orderintro2.py' 2026-02-11T13:11:04,003 adding 'docs/_static/examples/pathintro.py' 2026-02-11T13:11:04,004 adding 'docs/_static/examples/simulationintro.py' 2026-02-11T13:11:04,007 adding 'docs/_static/examples/extending-example/engine/setup.py' 2026-02-11T13:11:04,009 adding 'docs/_static/examples/extending-example/engine/vvintegratorc.py' 2026-02-11T13:11:04,010 adding 'docs/_static/examples/extending-example/engine/vvintegratorf.py' 2026-02-11T13:11:04,013 adding 'docs/_static/examples/extending-example/potential/ljpotentialc.py' 2026-02-11T13:11:04,015 adding 'docs/_static/examples/extending-example/potential/ljpotentialfp.py' 2026-02-11T13:11:04,017 adding 'docs/_static/examples/extending-example/potential/setup.py' 2026-02-11T13:11:04,019 adding 'docs/_static/examples/extending-example/potentialfb/ljpotentialc.py' 2026-02-11T13:11:04,022 adding 'docs/_static/examples/extending-example/potentialfb/ljpotentialf.py' 2026-02-11T13:11:04,023 adding 'docs/_static/examples/extending-example/potentialfb/md_forward_backward_ext.py' 2026-02-11T13:11:04,025 adding 'docs/_static/examples/extending-example/potentialfb/setup.py' 2026-02-11T13:11:04,027 adding 'docs/_static/examples/gromacs-hydrate/orderp.py' 2026-02-11T13:11:04,030 adding 'docs/_static/examples/permeability/flat_potential.py' 2026-02-11T13:11:04,032 adding 'docs/_static/examples/pso-example/ackley.py' 2026-02-11T13:11:04,034 adding 'docs/_static/examples/pso-example/pso_run.py' 2026-02-11T13:11:04,035 adding 'docs/_static/examples/pso-example/psoengine.py' 2026-02-11T13:11:04,038 adding 'docs/_static/examples/pyvisa-analysis/orderp.py' 2026-02-11T13:11:04,040 adding 'docs/_static/examples/retis2d-hysteresis/order-x.py' 2026-02-11T13:11:04,042 adding 'docs/_static/examples/retis2d-hysteresis/order-xy.py' 2026-02-11T13:11:04,044 adding 'docs/_static/examples/retis2d-hysteresis/potential.py' 2026-02-11T13:11:04,046 adding 'docs/_static/examples/retis2d-wca/orderp.py' 2026-02-11T13:11:04,049 adding 'docs/_static/exercises/retis.py' 2026-02-11T13:11:04,053 adding 'docs/_static/exercises/retis_movie.py' 2026-02-11T13:11:04,055 adding 'docs/_static/orderparameter-examples/orderparameter1.py' 2026-02-11T13:11:04,057 adding 'docs/_static/orderparameter-examples/orderparameter2.py' 2026-02-11T13:11:04,059 adding 'docs/ext/pyretis_collapse_block.py' 2026-02-11T13:11:04,061 adding 'docs/ext/pyretis_highlight.py' 2026-02-11T13:11:04,063 adding 'docs/ext/pyretis_input_example.py' 2026-02-11T13:11:04,065 adding 'docs/ext/pyretis_keyword.py' 2026-02-11T13:11:04,066 adding 'docs/ext/pyretis_translator.py' 2026-02-11T13:11:04,068 adding 'docs/ext/pyretisstyle.py' 2026-02-11T13:11:04,071 adding 'examples/extending/integrator-langevin/test_random.py' 2026-02-11T13:11:04,073 adding 'examples/extending/integrator-langevin/vvintegratorf.py' 2026-02-11T13:11:04,076 adding 'examples/extending/integrator-vv/c/md_nve.py' 2026-02-11T13:11:04,078 adding 'examples/extending/integrator-vv/c/setup.py' 2026-02-11T13:11:04,079 adding 'examples/extending/integrator-vv/c/test_vvintegrator.py' 2026-02-11T13:11:04,081 adding 'examples/extending/integrator-vv/c/vvintegratorc.py' 2026-02-11T13:11:04,083 adding 'examples/extending/integrator-vv/fortran/md_nve.py' 2026-02-11T13:11:04,085 adding 'examples/extending/integrator-vv/fortran/test_vvintegrator.py' 2026-02-11T13:11:04,087 adding 'examples/extending/integrator-vv/fortran/vvintegratorf.py' 2026-02-11T13:11:04,089 adding 'examples/extending/lennard-jones/plot_results.py' 2026-02-11T13:11:04,092 adding 'examples/extending/lennard-jones/time_lj_numba.py' 2026-02-11T13:11:04,094 adding 'examples/extending/lennard-jones/time_lj_numpy.py' 2026-02-11T13:11:04,095 adding 'examples/extending/lennard-jones/time_lj_python.py' 2026-02-11T13:11:04,098 adding 'examples/extending/lennard-jones/c/ljpotentialc.py' 2026-02-11T13:11:04,100 adding 'examples/extending/lennard-jones/c/md_nve.py' 2026-02-11T13:11:04,102 adding 'examples/extending/lennard-jones/c/setup.py' 2026-02-11T13:11:04,103 adding 'examples/extending/lennard-jones/c/test_ljforces.py' 2026-02-11T13:11:04,105 adding 'examples/extending/lennard-jones/c/time_ljforces.py' 2026-02-11T13:11:04,108 adding 'examples/extending/lennard-jones/fortran/ljpotentialf.py' 2026-02-11T13:11:04,110 adding 'examples/extending/lennard-jones/fortran/md_nve.py' 2026-02-11T13:11:04,112 adding 'examples/extending/lennard-jones/fortran/test_ljforces.py' 2026-02-11T13:11:04,114 adding 'examples/extending/lennard-jones/fortran/time_ljforces.py' 2026-02-11T13:11:04,116 adding 'examples/extending/lennard-jones/fortran-pointer/ljpotentialfp.py' 2026-02-11T13:11:04,118 adding 'examples/extending/lennard-jones/fortran-pointer/md_nve.py' 2026-02-11T13:11:04,120 adding 'examples/extending/lennard-jones/fortran-pointer/test_ljforces.py' 2026-02-11T13:11:04,122 adding 'examples/extending/lennard-jones/fortran-pointer/time_ljforces.py' 2026-02-11T13:11:04,124 adding 'examples/extending/lennard-jones/omp-potential/ljpotentialfp.py' 2026-02-11T13:11:04,126 adding 'examples/extending/lennard-jones/omp-potential/plot_results.py' 2026-02-11T13:11:04,128 adding 'examples/extending/lennard-jones/omp-potential/test_ljforces.py' 2026-02-11T13:11:04,130 adding 'examples/extending/lennard-jones/omp-potential/time_ljforces.py' 2026-02-11T13:11:04,133 adding 'examples/extending/order-parameter/orderparameter1.py' 2026-02-11T13:11:04,138 adding 'examples/molecular_dynamics/md_movie_2d/md_movie_2d.py' 2026-02-11T13:11:04,141 adding 'examples/molecular_dynamics/md_nve/md_nve.py' 2026-02-11T13:11:04,144 adding 'examples/molecular_dynamics/md_nve/md_nve_plain.py' 2026-02-11T13:11:04,147 adding 'examples/molecular_dynamics/md_nve/forward_backward/md_forward_backward.py' 2026-02-11T13:11:04,151 adding 'examples/molecular_dynamics/md_nve/forward_backward/external/md_forward_backward_ext.py' 2026-02-11T13:11:04,155 adding 'examples/molecular_dynamics/md_nve/forward_backward/external/cpython3/ljpotentialc.py' 2026-02-11T13:11:04,157 adding 'examples/molecular_dynamics/md_nve/forward_backward/external/cpython3/setup.py' 2026-02-11T13:11:04,161 adding 'examples/molecular_dynamics/md_nve/forward_backward/external/fortran/ljpotentialf.py' 2026-02-11T13:11:04,164 adding 'examples/molecular_dynamics/md_nve/from_settings/plot_bokeh.py' 2026-02-11T13:11:04,166 adding 'examples/molecular_dynamics/md_nve/from_settings/plot_thermo.py' 2026-02-11T13:11:04,170 adding 'examples/molecular_dynamics/md_nve/real_units/compare.py' 2026-02-11T13:11:04,175 adding 'examples/molecular_dynamics/md_wca/md_movie_2d_wca.py' 2026-02-11T13:11:04,178 adding 'examples/molecular_dynamics/new_integrator/doublependulum.py' 2026-02-11T13:11:04,181 adding 'examples/molecular_dynamics/new_integrator/myintegrator.py' 2026-02-11T13:11:04,184 adding 'examples/molecular_dynamics/new_integrator/run_pendulum.py' 2026-02-11T13:11:04,188 adding 'examples/other/particle_swarm/ackley.py' 2026-02-11T13:11:04,190 adding 'examples/other/particle_swarm/pso_run.py' 2026-02-11T13:11:04,193 adding 'examples/other/particle_swarm/psoengine.py' 2026-02-11T13:11:04,198 adding 'examples/path_sampling/1D-double-well-retis-movie/retis.py' 2026-02-11T13:11:04,201 adding 'examples/path_sampling/1D-double-well-retis-movie/retis_intro.py' 2026-02-11T13:11:04,206 adding 'examples/path_sampling/1D-double-well-retis-movie/retis_movie.py' 2026-02-11T13:11:04,212 adding 'examples/path_sampling/1D-double-well-retis-movie/retis_movie_log.py' 2026-02-11T13:11:04,215 adding 'examples/path_sampling/2D-hysteresis/order.py' 2026-02-11T13:11:04,218 adding 'examples/path_sampling/2D-hysteresis/potential.py' 2026-02-11T13:11:04,222 adding 'examples/path_sampling/2D-hysteresis/interactive/interactive-x.py' 2026-02-11T13:11:04,226 adding 'examples/path_sampling/2D-hysteresis/interactive/interactive-xy.py' 2026-02-11T13:11:04,230 adding 'examples/path_sampling/2D-hysteresis/interactive/interactive-y.py' 2026-02-11T13:11:04,233 adding 'examples/path_sampling/2D-hysteresis/retis-x/plot_potential.py' 2026-02-11T13:11:04,235 adding 'examples/path_sampling/2D-hysteresis/retis-x/plot_traj.py' 2026-02-11T13:11:04,237 adding 'examples/path_sampling/2D-hysteresis/retis-xy/orderp.py' 2026-02-11T13:11:04,239 adding 'examples/path_sampling/2D-hysteresis/retis-xy/plot_traj.py' 2026-02-11T13:11:04,241 adding 'examples/path_sampling/2D-hysteresis/retis-y/plot_traj.py' 2026-02-11T13:11:04,244 adding 'examples/path_sampling/2D-wca/high-barrier/generate_initial.py' 2026-02-11T13:11:04,246 adding 'examples/path_sampling/2D-wca/high-barrier/c-for-python3/setup.py' 2026-02-11T13:11:04,248 adding 'examples/path_sampling/2D-wca/high-barrier/c-for-python3/test_orderparameter.py' 2026-02-11T13:11:04,249 adding 'examples/path_sampling/2D-wca/high-barrier/c-for-python3/test_wcaforces.py' 2026-02-11T13:11:04,251 adding 'examples/path_sampling/2D-wca/high-barrier/c-for-python3/wcafunctions.py' 2026-02-11T13:11:04,254 adding 'examples/path_sampling/2D-wca/low-barrier/generate_initial.py' 2026-02-11T13:11:04,255 adding 'examples/path_sampling/2D-wca/low-barrier/orderp.py' 2026-02-11T13:11:04,258 adding 'examples/path_sampling/2D-wca/low-barrier/c-for-python3/orderp.py' 2026-02-11T13:11:04,259 adding 'examples/path_sampling/2D-wca/low-barrier/c-for-python3/setup.py' 2026-02-11T13:11:04,261 adding 'examples/path_sampling/2D-wca/low-barrier/c-for-python3/test_wcaforces.py' 2026-02-11T13:11:04,263 adding 'examples/path_sampling/2D-wca/low-barrier/c-for-python3/wcafunctions.py' 2026-02-11T13:11:04,265 adding 'examples/path_sampling/gromacs-hydrate/orderp.py' 2026-02-11T13:11:04,267 adding 'examples/path_sampling/gromacs-hydrate/test_order.py' 2026-02-11T13:11:04,271 adding 'examples/test/test-cp2k/test-cp2k/test_cp2k.py' 2026-02-11T13:11:04,273 adding 'examples/test/test-cp2k/test-cp2k/test_cp2k_step.py' 2026-02-11T13:11:04,275 adding 'examples/test/test-cp2k/test-integrate/compare_cp2k_energies.py' 2026-02-11T13:11:04,277 adding 'examples/test/test-cp2k/test-integrate/compare_energies.py' 2026-02-11T13:11:04,279 adding 'examples/test/test-cp2k/test-integrate/make_inp.py' 2026-02-11T13:11:04,281 adding 'examples/test/test-cp2k/test-retis-load/compare.py' 2026-02-11T13:11:04,284 adding 'examples/test/test-gromacs/gmx/compare.py' 2026-02-11T13:11:04,286 adding 'examples/test/test-gromacs/gmx/copy_last_path.py' 2026-02-11T13:11:04,287 adding 'examples/test/test-gromacs/gmx/copy_restart_files.py' 2026-02-11T13:11:04,289 adding 'examples/test/test-gromacs/gmx/gromacs.py' 2026-02-11T13:11:04,291 adding 'examples/test/test-gromacs/gmx/make_mdp.py' 2026-02-11T13:11:04,293 adding 'examples/test/test-gromacs/gmx/merge_files.py' 2026-02-11T13:11:04,295 adding 'examples/test/test-gromacs/gmx/orderp.py' 2026-02-11T13:11:04,298 adding 'examples/test/test-gromacs/test-gromacs/test_gromacs.py' 2026-02-11T13:11:04,300 adding 'examples/test/test-gromacs/test-integrate/compare_energies.py' 2026-02-11T13:11:04,303 adding 'examples/test/test-gromacs/test-load/test-load-sparse/load-traj/orderp.py' 2026-02-11T13:11:04,305 adding 'examples/test/test-gromacs/test-repptis/compare.py' 2026-02-11T13:11:04,308 adding 'examples/test/test-gromacs/test-retis/compare.py' 2026-02-11T13:11:04,311 adding 'examples/test/test-internal/compare-internal-with-lammps/run_md_comparison.py' 2026-02-11T13:11:04,313 adding 'examples/test/test-internal/md-restart/compare.py' 2026-02-11T13:11:04,316 adding 'examples/test/test-internal/mdflux-restart/compare.py' 2026-02-11T13:11:04,319 adding 'examples/test/test-internal/partial-path/compare.py' 2026-02-11T13:11:04,320 adding 'examples/test/test-internal/partial-path/flat-potential.py' 2026-02-11T13:11:04,323 adding 'examples/test/test-internal/retis/compare.py' 2026-02-11T13:11:04,326 adding 'examples/test/test-internal/retis-ss-wt-wf/compare.py' 2026-02-11T13:11:04,329 adding 'examples/test/test-internal/tis-multiple/compare.py' 2026-02-11T13:11:04,331 adding 'examples/test/test-internal/tis-restart/compare.py' 2026-02-11T13:11:04,334 adding 'examples/test/test-lammps/lammps_testing/plotting.py' 2026-02-11T13:11:04,337 adding 'examples/test/test-lammps/test-dump-phasepoint/test_lammps.py' 2026-02-11T13:11:04,339 adding 'examples/test/test-lammps/test-integrate/plotting.py' 2026-02-11T13:11:04,341 adding 'examples/test/test-lammps/test-integrate/test_lammps.py' 2026-02-11T13:11:04,343 adding 'examples/test/test-lammps/test-modify-velocities/test_lammps.py' 2026-02-11T13:11:04,345 adding 'examples/test/test-lammps/test-propagate/plotting.py' 2026-02-11T13:11:04,347 adding 'examples/test/test-lammps/test-propagate/test_lammps.py' 2026-02-11T13:11:04,349 adding 'examples/test/test-pyvisa/lib/compare_hdf5.py' 2026-02-11T13:11:04,351 adding 'examples/test/test-pyvisa/lib/compare_order.py' 2026-02-11T13:11:04,353 adding 'examples/umbrella_sampling/umbrella_sampling_mc.py' 2026-02-11T13:11:04,355 adding 'examples/umbrella_sampling/umbrella_sampling_mc_movie.py' 2026-02-11T13:11:04,358 adding 'examples/umbrella_sampling/fancy_movie/umbrella_sampling_mc_fancy_movie.py' 2026-02-11T13:11:04,361 adding 'pyretis/__init__.py' 2026-02-11T13:11:04,362 adding 'pyretis/info.py' 2026-02-11T13:11:04,364 adding 'pyretis/version.py' 2026-02-11T13:11:04,366 adding 'pyretis/analysis/__init__.py' 2026-02-11T13:11:04,368 adding 'pyretis/analysis/analysis.py' 2026-02-11T13:11:04,370 adding 'pyretis/analysis/energy_analysis.py' 2026-02-11T13:11:04,372 adding 'pyretis/analysis/flux_analysis.py' 2026-02-11T13:11:04,374 adding 'pyretis/analysis/histogram.py' 2026-02-11T13:11:04,376 adding 'pyretis/analysis/order_analysis.py' 2026-02-11T13:11:04,381 adding 'pyretis/analysis/path_analysis.py' 2026-02-11T13:11:04,384 adding 'pyretis/bin/pyretisanalyse.py' 2026-02-11T13:11:04,387 adding 'pyretis/bin/pyretisrun.py' 2026-02-11T13:11:04,389 adding 'pyretis/bin/pyvisa.py' 2026-02-11T13:11:04,391 adding 'pyretis/core/__init__.py' 2026-02-11T13:11:04,395 adding 'pyretis/core/box.py' 2026-02-11T13:11:04,399 adding 'pyretis/core/common.py' 2026-02-11T13:11:04,401 adding 'pyretis/core/montecarlo.py' 2026-02-11T13:11:04,404 adding 'pyretis/core/particlefunctions.py' 2026-02-11T13:11:04,407 adding 'pyretis/core/particles.py' 2026-02-11T13:11:04,411 adding 'pyretis/core/path.py' 2026-02-11T13:11:04,415 adding 'pyretis/core/pathensemble.py' 2026-02-11T13:11:04,417 adding 'pyretis/core/properties.py' 2026-02-11T13:11:04,420 adding 'pyretis/core/random_gen.py' 2026-02-11T13:11:04,427 adding 'pyretis/core/retis.py' 2026-02-11T13:11:04,430 adding 'pyretis/core/system.py' 2026-02-11T13:11:04,438 adding 'pyretis/core/tis.py' 2026-02-11T13:11:04,444 adding 'pyretis/core/units.py' 2026-02-11T13:11:04,447 adding 'pyretis/engines/__init__.py' 2026-02-11T13:11:04,451 adding 'pyretis/engines/cp2k.py' 2026-02-11T13:11:04,453 adding 'pyretis/engines/engine.py' 2026-02-11T13:11:04,457 adding 'pyretis/engines/external.py' 2026-02-11T13:11:04,462 adding 'pyretis/engines/gromacs.py' 2026-02-11T13:11:04,465 adding 'pyretis/engines/gromacs2.py' 2026-02-11T13:11:04,470 adding 'pyretis/engines/internal.py' 2026-02-11T13:11:04,474 adding 'pyretis/engines/lammps.py' 2026-02-11T13:11:04,477 adding 'pyretis/engines/openmm.py' 2026-02-11T13:11:04,480 adding 'pyretis/forcefield/__init__.py' 2026-02-11T13:11:04,481 adding 'pyretis/forcefield/factory.py' 2026-02-11T13:11:04,483 adding 'pyretis/forcefield/forcefield.py' 2026-02-11T13:11:04,485 adding 'pyretis/forcefield/potential.py' 2026-02-11T13:11:04,487 adding 'pyretis/forcefield/potentials/__init__.py' 2026-02-11T13:11:04,489 adding 'pyretis/forcefield/potentials/potentials.py' 2026-02-11T13:11:04,492 adding 'pyretis/forcefield/potentials/pairpotentials/__init__.py' 2026-02-11T13:11:04,494 adding 'pyretis/forcefield/potentials/pairpotentials/lennardjones.py' 2026-02-11T13:11:04,496 adding 'pyretis/forcefield/potentials/pairpotentials/pairpotential.py' 2026-02-11T13:11:04,498 adding 'pyretis/forcefield/potentials/pairpotentials/wca.py' 2026-02-11T13:11:04,501 adding 'pyretis/initiation/__init__.py' 2026-02-11T13:11:04,504 adding 'pyretis/initiation/initiate_kick.py' 2026-02-11T13:11:04,508 adding 'pyretis/initiation/initiate_load.py' 2026-02-11T13:11:04,510 adding 'pyretis/initiation/initiate_restart.py' 2026-02-11T13:11:04,512 adding 'pyretis/inout/__init__.py' 2026-02-11T13:11:04,514 adding 'pyretis/inout/archive.py' 2026-02-11T13:11:04,515 adding 'pyretis/inout/checker.py' 2026-02-11T13:11:04,517 adding 'pyretis/inout/common.py' 2026-02-11T13:11:04,519 adding 'pyretis/inout/fileio.py' 2026-02-11T13:11:04,521 adding 'pyretis/inout/restart.py' 2026-02-11T13:11:04,522 adding 'pyretis/inout/screen.py' 2026-02-11T13:11:04,526 adding 'pyretis/inout/settings.py' 2026-02-11T13:11:04,528 adding 'pyretis/inout/simulationio.py' 2026-02-11T13:11:04,530 adding 'pyretis/inout/analysisio/__init__.py' 2026-02-11T13:11:04,535 adding 'pyretis/inout/analysisio/analysisio.py' 2026-02-11T13:11:04,537 adding 'pyretis/inout/formats/__init__.py' 2026-02-11T13:11:04,539 adding 'pyretis/inout/formats/cp2k.py' 2026-02-11T13:11:04,541 adding 'pyretis/inout/formats/cross.py' 2026-02-11T13:11:04,542 adding 'pyretis/inout/formats/energy.py' 2026-02-11T13:11:04,544 adding 'pyretis/inout/formats/formatter.py' 2026-02-11T13:11:04,547 adding 'pyretis/inout/formats/gromacs.py' 2026-02-11T13:11:04,549 adding 'pyretis/inout/formats/order.py' 2026-02-11T13:11:04,551 adding 'pyretis/inout/formats/path.py' 2026-02-11T13:11:04,553 adding 'pyretis/inout/formats/pathensemble.py' 2026-02-11T13:11:04,554 adding 'pyretis/inout/formats/snapshot.py' 2026-02-11T13:11:04,557 adding 'pyretis/inout/formats/txt_table.py' 2026-02-11T13:11:04,559 adding 'pyretis/inout/formats/xyz.py' 2026-02-11T13:11:04,561 adding 'pyretis/inout/plotting/__init__.py' 2026-02-11T13:11:04,566 adding 'pyretis/inout/plotting/mpl_plotting.py' 2026-02-11T13:11:04,567 adding 'pyretis/inout/plotting/plotting.py' 2026-02-11T13:11:04,570 adding 'pyretis/inout/plotting/txt_plotting.py' 2026-02-11T13:11:04,572 adding 'pyretis/inout/plotting/styles/pyretis.mplstyle' 2026-02-11T13:11:04,573 adding 'pyretis/inout/plotting/styles/pyretisweb.mplstyle' 2026-02-11T13:11:04,575 adding 'pyretis/inout/report/__init__.py' 2026-02-11T13:11:04,576 adding 'pyretis/inout/report/markup.py' 2026-02-11T13:11:04,578 adding 'pyretis/inout/report/report.py' 2026-02-11T13:11:04,580 adding 'pyretis/inout/report/report_md.py' 2026-02-11T13:11:04,582 adding 'pyretis/inout/report/report_path.py' 2026-02-11T13:11:04,584 adding 'pyretis/inout/report/templates/report_mdflux.rst' 2026-02-11T13:11:04,586 adding 'pyretis/inout/report/templates/report_mdflux.tex' 2026-02-11T13:11:04,587 adding 'pyretis/inout/report/templates/report_mdflux.txt' 2026-02-11T13:11:04,588 adding 'pyretis/inout/report/templates/report_pptis.txt' 2026-02-11T13:11:04,589 adding 'pyretis/inout/report/templates/report_repptis.rst' 2026-02-11T13:11:04,590 adding 'pyretis/inout/report/templates/report_repptis.tex' 2026-02-11T13:11:04,592 adding 'pyretis/inout/report/templates/report_retis.rst' 2026-02-11T13:11:04,593 adding 'pyretis/inout/report/templates/report_retis.tex' 2026-02-11T13:11:04,594 adding 'pyretis/inout/report/templates/report_retis0.txt' 2026-02-11T13:11:04,596 adding 'pyretis/inout/report/templates/report_tis-multiple.rst' 2026-02-11T13:11:04,597 adding 'pyretis/inout/report/templates/report_tis-multiple.tex' 2026-02-11T13:11:04,598 adding 'pyretis/inout/report/templates/report_tis-multiple.txt' 2026-02-11T13:11:04,599 adding 'pyretis/inout/report/templates/report_tis.rst' 2026-02-11T13:11:04,601 adding 'pyretis/inout/report/templates/report_tis.tex' 2026-02-11T13:11:04,602 adding 'pyretis/inout/report/templates/report_tis.txt' 2026-02-11T13:11:04,604 adding 'pyretis/orderparameter/__init__.py' 2026-02-11T13:11:04,605 adding 'pyretis/orderparameter/orderangle.py' 2026-02-11T13:11:04,606 adding 'pyretis/orderparameter/orderdihedral.py' 2026-02-11T13:11:04,609 adding 'pyretis/orderparameter/orderparameter.py' 2026-02-11T13:11:04,611 adding 'pyretis/pyvisa/__init__.py' 2026-02-11T13:11:04,613 adding 'pyretis/pyvisa/common.py' 2026-02-11T13:11:04,615 adding 'pyretis/pyvisa/info.py' 2026-02-11T13:11:04,618 adding 'pyretis/pyvisa/orderparam_density.py' 2026-02-11T13:11:04,620 adding 'pyretis/pyvisa/plotting.py' 2026-02-11T13:11:04,625 adding 'pyretis/pyvisa/pyvisaGUI.ui' 2026-02-11T13:11:05,151 adding 'pyretis/pyvisa/resources_rc.py' 2026-02-11T13:11:05,161 adding 'pyretis/pyvisa/statistical_methods.py' 2026-02-11T13:11:05,171 adding 'pyretis/pyvisa/visualize.py' 2026-02-11T13:11:05,173 adding 'pyretis/setup/__init__.py' 2026-02-11T13:11:05,175 adding 'pyretis/setup/common.py' 2026-02-11T13:11:05,176 adding 'pyretis/setup/createforcefield.py' 2026-02-11T13:11:05,178 adding 'pyretis/setup/createsimulation.py' 2026-02-11T13:11:05,181 adding 'pyretis/setup/createsystem.py' 2026-02-11T13:11:05,183 adding 'pyretis/simulation/__init__.py' 2026-02-11T13:11:05,184 adding 'pyretis/simulation/mc_simulation.py' 2026-02-11T13:11:05,186 adding 'pyretis/simulation/md_simulation.py' 2026-02-11T13:11:05,189 adding 'pyretis/simulation/path_simulation.py' 2026-02-11T13:11:05,191 adding 'pyretis/simulation/simulation.py' 2026-02-11T13:11:05,193 adding 'pyretis/simulation/simulation_task.py' 2026-02-11T13:11:05,194 adding 'pyretis/testing/__init__.py' 2026-02-11T13:11:05,196 adding 'pyretis/testing/compare.py' 2026-02-11T13:11:05,197 adding 'pyretis/testing/helpers.py' 2026-02-11T13:11:05,198 adding 'pyretis/testing/systemhelp.py' 2026-02-11T13:11:05,200 adding 'pyretis/tools/__init__.py' 2026-02-11T13:11:05,201 adding 'pyretis/tools/lattice.py' 2026-02-11T13:11:05,203 adding 'pyretis/tools/recalculate_order.py' 2026-02-11T13:11:05,206 adding 'pyretis-3.0.0.dist-info/licenses/LICENSE' 2026-02-11T13:11:05,207 adding 'test/__init__.py' 2026-02-11T13:11:05,209 adding 'test/analysis/__init__.py' 2026-02-11T13:11:05,210 adding 'test/analysis/help.py' 2026-02-11T13:11:05,211 adding 'test/analysis/test_analysis.py' 2026-02-11T13:11:05,213 adding 'test/analysis/test_energy_analysis.py' 2026-02-11T13:11:05,214 adding 'test/analysis/test_flux_analysis.py' 2026-02-11T13:11:05,215 adding 'test/analysis/test_orderp_analysis.py' 2026-02-11T13:11:05,217 adding 'test/analysis/test_path_analysis.py' 2026-02-11T13:11:05,219 adding 'test/bin/__init__.py' 2026-02-11T13:11:05,220 adding 'test/bin/help.py' 2026-02-11T13:11:05,222 adding 'test/bin/test_pyretisanalyse.py' 2026-02-11T13:11:05,223 adding 'test/bin/test_pyretisrun.py' 2026-02-11T13:11:05,225 adding 'test/bin/test_pyvisa.py' 2026-02-11T13:11:05,227 adding 'test/core/__init__.py' 2026-02-11T13:11:05,228 adding 'test/core/fooengine.py' 2026-02-11T13:11:05,230 adding 'test/core/help.py' 2026-02-11T13:11:05,232 adding 'test/core/test_box.py' 2026-02-11T13:11:05,234 adding 'test/core/test_common.py' 2026-02-11T13:11:05,236 adding 'test/core/test_montecarlo.py' 2026-02-11T13:11:05,237 adding 'test/core/test_particlefunctions.py' 2026-02-11T13:11:05,239 adding 'test/core/test_particles.py' 2026-02-11T13:11:05,241 adding 'test/core/test_path.py' 2026-02-11T13:11:05,244 adding 'test/core/test_pathensemble.py' 2026-02-11T13:11:05,246 adding 'test/core/test_random.py' 2026-02-11T13:11:05,250 adding 'test/core/test_retis.py' 2026-02-11T13:11:05,252 adding 'test/core/test_system.py' 2026-02-11T13:11:05,257 adding 'test/core/test_tis.py' 2026-02-11T13:11:05,259 adding 'test/core/test_units.py' 2026-02-11T13:11:05,261 adding 'test/engines/__init__.py' 2026-02-11T13:11:05,262 adding 'test/engines/aprogram.py' 2026-02-11T13:11:05,264 adding 'test/engines/mockcp2k.py' 2026-02-11T13:11:05,265 adding 'test/engines/mockgmx.py' 2026-02-11T13:11:05,267 adding 'test/engines/mocklammps.py' 2026-02-11T13:11:05,268 adding 'test/engines/mockmdrun.py' 2026-02-11T13:11:05,270 adding 'test/engines/mockmdrun2.py' 2026-02-11T13:11:05,272 adding 'test/engines/test_cp2k.py' 2026-02-11T13:11:05,274 adding 'test/engines/test_engines.py' 2026-02-11T13:11:05,276 adding 'test/engines/test_externalengine.py' 2026-02-11T13:11:05,278 adding 'test/engines/test_gromacs.py' 2026-02-11T13:11:05,280 adding 'test/engines/test_gromacs2.py' 2026-02-11T13:11:05,281 adding 'test/engines/test_internalengine.py' 2026-02-11T13:11:05,284 adding 'test/engines/test_lammps.py' 2026-02-11T13:11:05,285 adding 'test/engines/test_openmm.py' 2026-02-11T13:11:05,287 adding 'test/engines/test_helpers/__init__.py' 2026-02-11T13:11:05,288 adding 'test/engines/test_helpers/test_helpers.py' 2026-02-11T13:11:05,290 adding 'test/forcefield/__init__.py' 2026-02-11T13:11:05,291 adding 'test/forcefield/test_forcefield.py' 2026-02-11T13:11:05,293 adding 'test/forcefield/test_lennardjones.py' 2026-02-11T13:11:05,294 adding 'test/forcefield/test_pairpotentials.py' 2026-02-11T13:11:05,295 adding 'test/forcefield/test_potential.py' 2026-02-11T13:11:05,297 adding 'test/forcefield/test_potentials.py' 2026-02-11T13:11:05,298 adding 'test/forcefield/test_wcapair.py' 2026-02-11T13:11:05,300 adding 'test/initiation/__init__.py' 2026-02-11T13:11:05,302 adding 'test/initiation/help.py' 2026-02-11T13:11:05,304 adding 'test/initiation/test_initiate_kick.py' 2026-02-11T13:11:05,308 adding 'test/initiation/test_initiate_load.py' 2026-02-11T13:11:05,310 adding 'test/initiation/test_initiate_restart.py' 2026-02-11T13:11:05,311 adding 'test/initiation/test_initiation.py' 2026-02-11T13:11:05,313 adding 'test/initiation/cp2k/mockcp2k.py' 2026-02-11T13:11:05,315 adding 'test/initiation/gromacs/mockgmx.py' 2026-02-11T13:11:05,317 adding 'test/initiation/gromacs/mockmdrun.py' 2026-02-11T13:11:05,318 adding 'test/initiation/gromacs/orderp.py' 2026-02-11T13:11:05,320 adding 'test/inout/__init__.py' 2026-02-11T13:11:05,321 adding 'test/inout/fooengine.py' 2026-02-11T13:11:05,323 adding 'test/inout/fooorderparameter.py' 2026-02-11T13:11:05,324 adding 'test/inout/foopotential.py' 2026-02-11T13:11:05,326 adding 'test/inout/help.py' 2026-02-11T13:11:05,327 adding 'test/inout/test_archive.py' 2026-02-11T13:11:05,329 adding 'test/inout/test_checker.py' 2026-02-11T13:11:05,330 adding 'test/inout/test_common.py' 2026-02-11T13:11:05,332 adding 'test/inout/test_cp2kio.py' 2026-02-11T13:11:05,335 adding 'test/inout/test_createsimulation.py' 2026-02-11T13:11:05,337 adding 'test/inout/test_createsystem.py' 2026-02-11T13:11:05,340 adding 'test/inout/test_fileio.py' 2026-02-11T13:11:05,342 adding 'test/inout/test_formatters.py' 2026-02-11T13:11:05,344 adding 'test/inout/test_formatters_table.py' 2026-02-11T13:11:05,347 adding 'test/inout/test_gromacsio.py' 2026-02-11T13:11:05,348 adding 'test/inout/test_reports.py' 2026-02-11T13:11:05,350 adding 'test/inout/test_restart.py' 2026-02-11T13:11:05,351 adding 'test/inout/test_screen.py' 2026-02-11T13:11:05,355 adding 'test/inout/test_settings.py' 2026-02-11T13:11:05,357 adding 'test/inout/test_setup_common.py' 2026-02-11T13:11:05,358 adding 'test/inout/test_simulationio.py' 2026-02-11T13:11:05,360 adding 'test/inout/test_traj_formatters.py' 2026-02-11T13:11:05,362 adding 'test/inout/test_xyzio.py' 2026-02-11T13:11:05,363 adding 'test/orderparameter/__init__.py' 2026-02-11T13:11:05,366 adding 'test/orderparameter/test_orderparameter.py' 2026-02-11T13:11:05,368 adding 'test/pyvisa/__init__.py' 2026-02-11T13:11:05,370 adding 'test/pyvisa/test_common.py' 2026-02-11T13:11:05,372 adding 'test/pyvisa/test_orderparam_density.py' 2026-02-11T13:11:05,373 adding 'test/pyvisa/test_plotting.py' 2026-02-11T13:11:05,375 adding 'test/pyvisa/test_statistical_methods.py' 2026-02-11T13:11:05,376 adding 'test/simulation/__init__.py' 2026-02-11T13:11:05,378 adding 'test/simulation/help.py' 2026-02-11T13:11:05,380 adding 'test/simulation/test_mdsimulation.py' 2026-02-11T13:11:05,382 adding 'test/simulation/test_pathsimulation.py' 2026-02-11T13:11:05,384 adding 'test/simulation/test_simulation.py' 2026-02-11T13:11:05,385 adding 'test/simulation/test_simulation_task.py' 2026-02-11T13:11:05,387 adding 'test/simulation/test_umbrellawindow.py' 2026-02-11T13:11:05,388 adding 'test/testing/__init__.py' 2026-02-11T13:11:05,390 adding 'test/testing/test_compare.py' 2026-02-11T13:11:05,391 adding 'test/testing/test_helpers.py' 2026-02-11T13:11:05,393 adding 'test/tools/__init__.py' 2026-02-11T13:11:05,394 adding 'test/tools/test_lattice.py' 2026-02-11T13:11:05,396 adding 'test/tools/test_recalculate.py' 2026-02-11T13:11:05,397 adding 'pyretis-3.0.0.dist-info/METADATA' 2026-02-11T13:11:05,398 adding 'pyretis-3.0.0.dist-info/WHEEL' 2026-02-11T13:11:05,399 adding 'pyretis-3.0.0.dist-info/entry_points.txt' 2026-02-11T13:11:05,400 adding 'pyretis-3.0.0.dist-info/top_level.txt' 2026-02-11T13:11:05,406 adding 'pyretis-3.0.0.dist-info/RECORD' 2026-02-11T13:11:05,430 removing build/bdist.linux-armv7l/wheel 2026-02-11T13:11:05,671 Building wheel for pyretis (setup.py): finished with status 'done' 2026-02-11T13:11:05,688 Created wheel for pyretis: filename=pyretis-3.0.0-py3-none-any.whl size=1441205 sha256=871ce3a26cf9c09e1b987aa054abd61550d436765d9d09dd505e809f2729dc60 2026-02-11T13:11:05,689 Stored in directory: /tmp/pip-ephem-wheel-cache-jyso2cs_/wheels/e9/78/b4/83be63a127ef7ca6d4850c59c51351b175c7c001d1f2f68e73 2026-02-11T13:11:05,712 Successfully built pyretis 2026-02-11T13:11:05,754 Removed build tracker: '/tmp/pip-build-tracker-avzgvbus'