2026-02-11T16:23:18,227 Created temporary directory: /tmp/pip-ephem-wheel-cache-4769h2gp 2026-02-11T16:23:18,229 Created temporary directory: /tmp/pip-build-tracker-4qypvtty 2026-02-11T16:23:18,229 Initialized build tracking at /tmp/pip-build-tracker-4qypvtty 2026-02-11T16:23:18,230 Created build tracker: /tmp/pip-build-tracker-4qypvtty 2026-02-11T16:23:18,230 Entered build tracker: /tmp/pip-build-tracker-4qypvtty 2026-02-11T16:23:18,231 Created temporary directory: /tmp/pip-wheel-69kwokve 2026-02-11T16:23:18,234 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. 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https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b2-py3-none-any.whl#sha256=dc34830c4791cef76913516e175f6c69d921dd26db0b2c11395e64bcfff4354e (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-02-11T16:23:18,727 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b0-py3-none-any.whl#sha256=c74c0e54143586e25d9c1934b2d61f28330897547f50360edf68725306cd0d48 (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-02-11T16:23:18,727 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.2b0-py3-none-any.whl#sha256=a3c81606d051b477612e1eeed371682fdb4d1fa86aa41c28ff73dc8f44003e14 (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-02-11T16:23:18,728 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.1b0-py3-none-any.whl#sha256=5477ba6a7bdacacbd72882e68d7eaceb2a24f32ab32007d2fe70bdab95a2df63 (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-02-11T16:23:18,728 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3b0-py3-none-any.whl#sha256=e484efa82b28bf099ece04ecdc9a642dafd23ffc44ae414d77989f9c576bb96a (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-02-11T16:23:18,729 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-1.0.0b1-py3-none-any.whl#sha256=6d36929f4411ac1ff69548230bf74d77c4cc75e68aead196203186fb26094e49 (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-02-11T16:23:18,729 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-1.0.0a1-py3-none-any.whl#sha256=c088df2fbccef99c06f812beb1584e487375276c582430f35a8a78620ea3a41f (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-02-11T16:23:18,730 Skipping link: not a file: https://www.piwheels.org/simple/scipion-em-xmipp/ 2026-02-11T16:23:18,730 Skipping link: not a file: https://pypi.org/simple/scipion-em-xmipp/ 2026-02-11T16:23:18,755 Given no hashes to check 1 links for project 'scipion-em-xmipp': discarding no candidates 2026-02-11T16:23:18,773 Collecting scipion-em-xmipp==26.2.0 2026-02-11T16:23:18,776 Created temporary directory: /tmp/pip-unpack-dxjceur6 2026-02-11T16:23:19,016 Downloading scipion_em_xmipp-26.2.0.tar.gz (1.5 MB) 2026-02-11T16:23:19,862 Added scipion-em-xmipp==26.2.0 from https://files.pythonhosted.org/packages/b3/09/9cca8ca1688dc5a4a9cf6048dfb0761ff120fe5cd48e6aaa25349450ee5f/scipion_em_xmipp-26.2.0.tar.gz to build tracker '/tmp/pip-build-tracker-4qypvtty' 2026-02-11T16:23:19,866 Created temporary directory: /tmp/pip-build-env-az53a3af 2026-02-11T16:23:19,870 Installing build dependencies: started 2026-02-11T16:23:19,872 Running command pip subprocess to install build dependencies 2026-02-11T16:23:21,001 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-02-11T16:23:21,615 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-02-11T16:23:21,638 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-02-11T16:23:23,359 Collecting setuptools 2026-02-11T16:23:23,379 Using cached setuptools-82.0.0-py3-none-any.whl (1.0 MB) 2026-02-11T16:23:26,420 Installing collected packages: setuptools 2026-02-11T16:23:29,454 Successfully installed setuptools-82.0.0 2026-02-11T16:23:29,720 Installing build dependencies: finished with status 'done' 2026-02-11T16:23:29,726 Getting requirements to build wheel: started 2026-02-11T16:23:29,727 Running command Getting requirements to build wheel 2026-02-11T16:23:30,320 No `packages` or `py_modules` configuration, performing automatic discovery. 2026-02-11T16:23:30,321 `flat-layout` detected -- analysing . 2026-02-11T16:23:30,344 discovered packages -- ['xmipp3', 'xmipp3.protocols', 'xmipp3.viewers', 'xmipp3.tests', 'xmipp3.legacy', 'xmipp3.convert', 'xmipp3.protocols.protocol_preprocess', 'xmipp3.protocols.protocol_projmatch', 'xmipp3.legacy.protocols', 'xmipp3.legacy.viewers', 'xmipp3.legacy.tests'] 2026-02-11T16:23:30,349 /tmp/pip-build-env-az53a3af/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-02-11T16:23:30,350 !! 2026-02-11T16:23:30,351 ******************************************************************************** 2026-02-11T16:23:30,351 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-02-11T16:23:30,352 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-02-11T16:23:30,352 or your builds will no longer be supported. 2026-02-11T16:23:30,353 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-11T16:23:30,354 ******************************************************************************** 2026-02-11T16:23:30,355 !! 2026-02-11T16:23:30,355 corresp(dist, value, root_dir) 2026-02-11T16:23:30,436 running egg_info 2026-02-11T16:23:30,442 writing scipion_em_xmipp.egg-info/PKG-INFO 2026-02-11T16:23:30,445 writing dependency_links to scipion_em_xmipp.egg-info/dependency_links.txt 2026-02-11T16:23:30,447 writing entry points to scipion_em_xmipp.egg-info/entry_points.txt 2026-02-11T16:23:30,449 writing requirements to scipion_em_xmipp.egg-info/requires.txt 2026-02-11T16:23:30,450 writing top-level names to scipion_em_xmipp.egg-info/top_level.txt 2026-02-11T16:23:30,490 reading manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt' 2026-02-11T16:23:30,505 reading manifest template 'MANIFEST.in' 2026-02-11T16:23:30,508 adding license file 'LICENSE' 2026-02-11T16:23:30,521 writing manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt' 2026-02-11T16:23:30,619 Getting requirements to build wheel: finished with status 'done' 2026-02-11T16:23:30,622 Created temporary directory: /tmp/pip-modern-metadata-yiiavp1z 2026-02-11T16:23:30,625 Preparing metadata (pyproject.toml): started 2026-02-11T16:23:30,626 Running command Preparing metadata (pyproject.toml) 2026-02-11T16:23:31,178 No `packages` or `py_modules` configuration, performing automatic discovery. 2026-02-11T16:23:31,178 `flat-layout` detected -- analysing . 2026-02-11T16:23:31,197 discovered packages -- ['xmipp3', 'xmipp3.protocols', 'xmipp3.viewers', 'xmipp3.tests', 'xmipp3.legacy', 'xmipp3.convert', 'xmipp3.protocols.protocol_preprocess', 'xmipp3.protocols.protocol_projmatch', 'xmipp3.legacy.protocols', 'xmipp3.legacy.viewers', 'xmipp3.legacy.tests'] 2026-02-11T16:23:31,201 /tmp/pip-build-env-az53a3af/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-02-11T16:23:31,202 !! 2026-02-11T16:23:31,203 ******************************************************************************** 2026-02-11T16:23:31,204 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-02-11T16:23:31,205 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-02-11T16:23:31,205 or your builds will no longer be supported. 2026-02-11T16:23:31,207 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-11T16:23:31,207 ******************************************************************************** 2026-02-11T16:23:31,208 !! 2026-02-11T16:23:31,209 corresp(dist, value, root_dir) 2026-02-11T16:23:31,285 running dist_info 2026-02-11T16:23:31,296 creating /tmp/pip-modern-metadata-yiiavp1z/scipion_em_xmipp.egg-info 2026-02-11T16:23:31,297 writing /tmp/pip-modern-metadata-yiiavp1z/scipion_em_xmipp.egg-info/PKG-INFO 2026-02-11T16:23:31,300 writing dependency_links to /tmp/pip-modern-metadata-yiiavp1z/scipion_em_xmipp.egg-info/dependency_links.txt 2026-02-11T16:23:31,302 writing entry points to /tmp/pip-modern-metadata-yiiavp1z/scipion_em_xmipp.egg-info/entry_points.txt 2026-02-11T16:23:31,303 writing requirements to /tmp/pip-modern-metadata-yiiavp1z/scipion_em_xmipp.egg-info/requires.txt 2026-02-11T16:23:31,304 writing top-level names to /tmp/pip-modern-metadata-yiiavp1z/scipion_em_xmipp.egg-info/top_level.txt 2026-02-11T16:23:31,305 writing manifest file '/tmp/pip-modern-metadata-yiiavp1z/scipion_em_xmipp.egg-info/SOURCES.txt' 2026-02-11T16:23:31,341 reading manifest file '/tmp/pip-modern-metadata-yiiavp1z/scipion_em_xmipp.egg-info/SOURCES.txt' 2026-02-11T16:23:31,343 reading manifest template 'MANIFEST.in' 2026-02-11T16:23:31,345 adding license file 'LICENSE' 2026-02-11T16:23:31,356 writing manifest file '/tmp/pip-modern-metadata-yiiavp1z/scipion_em_xmipp.egg-info/SOURCES.txt' 2026-02-11T16:23:31,357 creating '/tmp/pip-modern-metadata-yiiavp1z/scipion_em_xmipp-26.2.0.dist-info' 2026-02-11T16:23:31,481 Preparing metadata (pyproject.toml): finished with status 'done' 2026-02-11T16:23:31,486 Source in /tmp/pip-wheel-69kwokve/scipion-em-xmipp_de10ac66ca4442ecbafafd4ead9b086e has version 26.2.0, which satisfies requirement scipion-em-xmipp==26.2.0 from https://files.pythonhosted.org/packages/b3/09/9cca8ca1688dc5a4a9cf6048dfb0761ff120fe5cd48e6aaa25349450ee5f/scipion_em_xmipp-26.2.0.tar.gz 2026-02-11T16:23:31,487 Removed scipion-em-xmipp==26.2.0 from https://files.pythonhosted.org/packages/b3/09/9cca8ca1688dc5a4a9cf6048dfb0761ff120fe5cd48e6aaa25349450ee5f/scipion_em_xmipp-26.2.0.tar.gz from build tracker '/tmp/pip-build-tracker-4qypvtty' 2026-02-11T16:23:31,492 Created temporary directory: /tmp/pip-unpack-1xax6dd_ 2026-02-11T16:23:31,493 Building wheels for collected packages: scipion-em-xmipp 2026-02-11T16:23:31,497 Created temporary directory: /tmp/pip-wheel-ej6z1z9a 2026-02-11T16:23:31,498 Destination directory: /tmp/pip-wheel-ej6z1z9a 2026-02-11T16:23:31,500 Building wheel for scipion-em-xmipp (pyproject.toml): started 2026-02-11T16:23:31,501 Running command Building wheel for scipion-em-xmipp (pyproject.toml) 2026-02-11T16:23:32,050 No `packages` or `py_modules` configuration, performing automatic discovery. 2026-02-11T16:23:32,050 `flat-layout` detected -- analysing . 2026-02-11T16:23:32,069 discovered packages -- ['xmipp3', 'xmipp3.protocols', 'xmipp3.viewers', 'xmipp3.tests', 'xmipp3.legacy', 'xmipp3.convert', 'xmipp3.protocols.protocol_preprocess', 'xmipp3.protocols.protocol_projmatch', 'xmipp3.legacy.protocols', 'xmipp3.legacy.viewers', 'xmipp3.legacy.tests'] 2026-02-11T16:23:32,074 /tmp/pip-build-env-az53a3af/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-02-11T16:23:32,074 !! 2026-02-11T16:23:32,075 ******************************************************************************** 2026-02-11T16:23:32,076 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-02-11T16:23:32,077 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-02-11T16:23:32,078 or your builds will no longer be supported. 2026-02-11T16:23:32,079 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-11T16:23:32,079 ******************************************************************************** 2026-02-11T16:23:32,081 !! 2026-02-11T16:23:32,081 corresp(dist, value, root_dir) 2026-02-11T16:23:32,148 running bdist_wheel 2026-02-11T16:23:32,165 running build 2026-02-11T16:23:32,166 running build_py 2026-02-11T16:23:32,172 creating build/lib/xmipp3 2026-02-11T16:23:32,174 copying xmipp3/protocolsCollectInfo.py -> build/lib/xmipp3 2026-02-11T16:23:32,176 copying xmipp3/programs.py -> build/lib/xmipp3 2026-02-11T16:23:32,179 copying xmipp3/bibtex.py -> build/lib/xmipp3 2026-02-11T16:23:32,181 copying xmipp3/logParser.py -> build/lib/xmipp3 2026-02-11T16:23:32,183 copying xmipp3/utils.py -> build/lib/xmipp3 2026-02-11T16:23:32,186 copying xmipp3/__init__.py -> build/lib/xmipp3 2026-02-11T16:23:32,188 copying xmipp3/checkProtocolsConf.py -> build/lib/xmipp3 2026-02-11T16:23:32,190 copying xmipp3/base.py -> build/lib/xmipp3 2026-02-11T16:23:32,193 copying xmipp3/version.py -> build/lib/xmipp3 2026-02-11T16:23:32,195 copying xmipp3/wizards.py -> build/lib/xmipp3 2026-02-11T16:23:32,197 copying xmipp3/constants.py -> build/lib/xmipp3 2026-02-11T16:23:32,202 creating build/lib/xmipp3/protocols 2026-02-11T16:23:32,203 copying xmipp3/protocols/protocol_reconstruct_significant.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,206 copying xmipp3/protocols/protocol_pick_noise.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,208 copying xmipp3/protocols/protocol_classes_2d_mapping.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,211 copying xmipp3/protocols/protocol_cl2d_align.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,214 copying xmipp3/protocols/protocol_local_ctf.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,217 copying xmipp3/protocols/protocol_postProcessing_deepPostProcessing.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,219 copying xmipp3/protocols/protocol_shift_particles.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,221 copying xmipp3/protocols/protocol_reconstruct_fourier.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,224 copying xmipp3/protocols/protocol_ml2d.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,227 copying xmipp3/protocols/protocol_cl2d.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,229 copying xmipp3/protocols/protocol_normalize_strain.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,231 copying xmipp3/protocols/protocol_trigger_data.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,234 copying xmipp3/protocols/protocol_ctf_micrographs.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,237 copying xmipp3/protocols/protocol_classify_pca.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,239 copying xmipp3/protocols/protocol_particle_pick_pairs.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,242 copying xmipp3/protocols/protocol_align_volume_and_particles.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,244 copying xmipp3/protocols/protocol_phantom_create.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,246 copying xmipp3/protocols/protocol_resolution_deepres.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,249 copying xmipp3/protocols/protocol_deep_hand.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,251 copying xmipp3/protocols/protocol_multiple_fscs.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,254 copying xmipp3/protocols/protocol_reconstruct_swarm.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,257 copying xmipp3/protocols/protocol_subtract_projection.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,260 copying xmipp3/protocols/protocol_volume_local_adjust.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,262 copying xmipp3/protocols/protocol_ctf_correct_wiener2d.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,265 copying xmipp3/protocols/protocol_convert_pdb.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,268 copying xmipp3/protocols/protocol_particle_pick_automatic.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,270 copying xmipp3/protocols/protocol_movie_gain.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,273 copying xmipp3/protocols/protocol_denoise_particles.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,275 copying xmipp3/protocols/protocol_validate_overfitting.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,278 copying xmipp3/protocols/protocol_preprocess_micrographs.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,280 copying xmipp3/protocols/protocol_movie_alignment_consensus.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,283 copying xmipp3/protocols/protocol_angular_graph_consistency.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,285 copying xmipp3/protocols/protocol_movie_max_shift.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,288 copying xmipp3/protocols/protocol_apply_transformation_matrix.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,291 copying xmipp3/protocols/protocol_rotational_symmetry.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,293 copying xmipp3/protocols/protocol_align_volume.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,296 copying xmipp3/protocols/protocol_apply_tilt_to_ctf.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,298 copying xmipp3/protocols/__init__.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,301 copying xmipp3/protocols/protocol_write_testP.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,303 copying xmipp3/protocols/protocol_kerdensom.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,306 copying xmipp3/protocols/protocol_deep_micrograph_screen.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,308 copying xmipp3/protocols/protocol_break_symmetry.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,310 copying xmipp3/protocols/protocol_movie_split_frames.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,313 copying xmipp3/protocols/protocol_volume_strain.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,315 copying xmipp3/protocols/protocol_volume_adjust_sub.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,318 copying xmipp3/protocols/protocol_ransac.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,320 copying xmipp3/protocols/protocol_volume_consensus.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,323 copying xmipp3/protocols/protocol_apply_zernike3d.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,325 copying xmipp3/protocols/protocol_extract_particles_pairs.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,328 copying xmipp3/protocols/protocol_simulate_ctf.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,330 copying xmipp3/protocols/protocol_center_particles.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,332 copying xmipp3/protocols/protocol_ctf_consensus.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,335 copying xmipp3/protocols/protocol_structure_map.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,337 copying xmipp3/protocols/protocol_ctf_defocus_group.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,340 copying xmipp3/protocols/protocol_mics_defocus_balancer.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,342 copying xmipp3/protocols/protocol_validate_nontilt.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,345 copying xmipp3/protocols/protocol_validate_fscq.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,348 copying xmipp3/protocols/protocol_multireference_alignability.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,351 copying xmipp3/protocols/protocol_resolution_fso.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,354 copying xmipp3/protocols/protocol_helical_parameters.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,356 copying xmipp3/protocols/protocol_classify_pca_streaming.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,359 copying xmipp3/protocols/protocol_particle_pick_remove_duplicates.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,361 copying xmipp3/protocols/protocol_generate_reprojections.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,363 copying xmipp3/protocols/protocol_assignment_tilt_pair.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,366 copying xmipp3/protocols/protocol_movie_dose_analysis.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,368 copying xmipp3/protocols/protocol_create_gallery.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,371 copying xmipp3/protocols/protocol_volume_local_sharpening.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,373 copying xmipp3/protocols/protocol_core_analysis.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,375 copying xmipp3/protocols/protocol_reconstruct_highres.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,379 copying xmipp3/protocols/protocol_screen_deepConsensus.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,383 copying xmipp3/protocols/protocol_resolution3d.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,385 copying xmipp3/protocols/protocol_cl2d_clustering.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,387 copying xmipp3/protocols/protocol_extract_asymmetric_unit.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,390 copying xmipp3/protocols/protocol_compare_angles.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,392 copying xmipp3/protocols/protocol_rotate_volume.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,395 copying xmipp3/protocols/protocol_ctf_correct_phase.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,397 copying xmipp3/protocols/protocol_resolution_directional.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,399 copying xmipp3/protocols/protocol_shift_volume.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,401 copying xmipp3/protocols/protocol_volume_deform_zernike3d.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,404 copying xmipp3/protocols/protocol_consensus_classes.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,406 copying xmipp3/protocols/protocol_structure_map_zernike3d.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,409 copying xmipp3/protocols/protocol_compare_reprojections.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,412 copying xmipp3/protocols/protocol_compute_likelihood.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,415 copying xmipp3/protocols/protocol_consensus_local_ctf.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,417 copying xmipp3/protocols/protocol_resolution_bfactor.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,419 copying xmipp3/protocols/protocol_particle_pick.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,422 copying xmipp3/protocols/protocol_flexalign.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,424 copying xmipp3/protocols/protocol_tilt_analysis.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,427 copying xmipp3/protocols/protocol_eliminate_empty_images.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,430 copying xmipp3/protocols/protocol_screen_particles.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,432 copying xmipp3/protocols/protocol_extract_particles.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,435 copying xmipp3/protocols/protocol_random_conical_tilt.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,438 copying xmipp3/protocols/protocol_write_testC.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,440 copying xmipp3/protocols/protocol_apply_alignment.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,442 copying xmipp3/protocols/protocol_analyze_local_ctf.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,444 copying xmipp3/protocols/protocol_particle_pick_consensus.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,446 copying xmipp3/protocols/protocol_resolution_monogenic_signal.py -> build/lib/xmipp3/protocols 2026-02-11T16:23:32,450 creating build/lib/xmipp3/viewers 2026-02-11T16:23:32,451 copying xmipp3/viewers/viewer_movie_alignment.py -> build/lib/xmipp3/viewers 2026-02-11T16:23:32,454 copying xmipp3/viewers/plotter.py -> build/lib/xmipp3/viewers 2026-02-11T16:23:32,456 copying xmipp3/viewers/viewer_resolution3d.py -> build/lib/xmipp3/viewers 2026-02-11T16:23:32,458 copying xmipp3/viewers/viewer_resolution_monogenic_signal.py -> build/lib/xmipp3/viewers 2026-02-11T16:23:32,461 copying xmipp3/viewers/viewer_validate_fscq.py -> build/lib/xmipp3/viewers 2026-02-11T16:23:32,463 copying xmipp3/viewers/viewer_volume_deform_zernike3d.py -> build/lib/xmipp3/viewers 2026-02-11T16:23:32,465 copying xmipp3/viewers/viewer_deep_micrograph_cleaner.py -> build/lib/xmipp3/viewers 2026-02-11T16:23:32,468 copying xmipp3/viewers/viewer_subtract_projection.py -> build/lib/xmipp3/viewers 2026-02-11T16:23:32,470 copying xmipp3/viewers/viewer_extract_asymmetric_unit.py -> build/lib/xmipp3/viewers 2026-02-11T16:23:32,472 copying xmipp3/viewers/viewer_LL_matrix.py -> build/lib/xmipp3/viewers 2026-02-11T16:23:32,474 copying xmipp3/viewers/viewer_eliminate_empty_images.py -> build/lib/xmipp3/viewers 2026-02-11T16:23:32,476 copying xmipp3/viewers/__init__.py -> build/lib/xmipp3/viewers 2026-02-11T16:23:32,478 copying xmipp3/viewers/viewer_local_sharpening.py -> build/lib/xmipp3/viewers 2026-02-11T16:23:32,480 copying xmipp3/viewers/viewer_dose_analysis.py -> build/lib/xmipp3/viewers 2026-02-11T16:23:32,482 copying xmipp3/viewers/viewer_deep_consensus.py -> build/lib/xmipp3/viewers 2026-02-11T16:23:32,485 copying xmipp3/viewers/viewer_cl2d.py -> build/lib/xmipp3/viewers 2026-02-11T16:23:32,487 copying xmipp3/viewers/viewer_projmatch.py -> build/lib/xmipp3/viewers 2026-02-11T16:23:32,490 copying xmipp3/viewers/viewer_resolution_deepres.py -> build/lib/xmipp3/viewers 2026-02-11T16:23:32,492 copying xmipp3/viewers/viewer_resolution_fso.py -> build/lib/xmipp3/viewers 2026-02-11T16:23:32,495 copying xmipp3/viewers/viewer_ransac.py -> build/lib/xmipp3/viewers 2026-02-11T16:23:32,497 copying xmipp3/viewers/viewer_consensus_classes.py -> build/lib/xmipp3/viewers 2026-02-11T16:23:32,499 copying xmipp3/viewers/viewer_ml2d.py -> build/lib/xmipp3/viewers 2026-02-11T16:23:32,501 copying xmipp3/viewers/viewer_cl2d_clustering.py -> build/lib/xmipp3/viewers 2026-02-11T16:23:32,503 copying xmipp3/viewers/viewer_resolution_bfactor.py -> build/lib/xmipp3/viewers 2026-02-11T16:23:32,506 copying xmipp3/viewers/viewer_deepEMHancer.py -> build/lib/xmipp3/viewers 2026-02-11T16:23:32,508 copying xmipp3/viewers/viewer_swarm.py -> build/lib/xmipp3/viewers 2026-02-11T16:23:32,510 copying xmipp3/viewers/viewer_apply_tilt_to_ctf.py -> build/lib/xmipp3/viewers 2026-02-11T16:23:32,512 copying xmipp3/viewers/viewer_volume_subtraction.py -> build/lib/xmipp3/viewers 2026-02-11T16:23:32,514 copying xmipp3/viewers/viewer_analyze_local_ctf.py -> build/lib/xmipp3/viewers 2026-02-11T16:23:32,516 copying xmipp3/viewers/viewer_reconstruct_highres.py -> build/lib/xmipp3/viewers 2026-02-11T16:23:32,519 copying xmipp3/viewers/viewer_validate_overfitting.py -> build/lib/xmipp3/viewers 2026-02-11T16:23:32,521 copying xmipp3/viewers/viewer_structure_map.py -> build/lib/xmipp3/viewers 2026-02-11T16:23:32,523 copying xmipp3/viewers/viewer_resolution_directional.py -> build/lib/xmipp3/viewers 2026-02-11T16:23:32,526 copying xmipp3/viewers/viewer_volume_consensus.py -> build/lib/xmipp3/viewers 2026-02-11T16:23:32,527 copying xmipp3/viewers/viewer_validate_nontilt.py -> build/lib/xmipp3/viewers 2026-02-11T16:23:32,529 copying xmipp3/viewers/viewer_pdb_deform_zernike3d.py -> build/lib/xmipp3/viewers 2026-02-11T16:23:32,532 copying xmipp3/viewers/viewer_volume_strain.py -> build/lib/xmipp3/viewers 2026-02-11T16:23:32,534 copying xmipp3/viewers/viewer.py -> build/lib/xmipp3/viewers 2026-02-11T16:23:32,536 copying xmipp3/viewers/viewer_normalize_strain.py -> build/lib/xmipp3/viewers 2026-02-11T16:23:32,538 copying xmipp3/viewers/viewer_ctf_consensus.py -> build/lib/xmipp3/viewers 2026-02-11T16:23:32,542 creating build/lib/xmipp3/tests 2026-02-11T16:23:32,543 copying xmipp3/tests/test_protocols_deepcenter_predict.py -> build/lib/xmipp3/tests 2026-02-11T16:23:32,545 copying xmipp3/tests/test_protocols_realignment_classes.py -> build/lib/xmipp3/tests 2026-02-11T16:23:32,547 copying xmipp3/tests/test_protocols_xmipp_2d.py -> build/lib/xmipp3/tests 2026-02-11T16:23:32,550 copying xmipp3/tests/test_protocols_add_noise.py -> build/lib/xmipp3/tests 2026-02-11T16:23:32,553 copying xmipp3/tests/test_protocol_compare_angles.py -> build/lib/xmipp3/tests 2026-02-11T16:23:32,555 copying xmipp3/tests/test_protocol_validate_overfitting.py -> build/lib/xmipp3/tests 2026-02-11T16:23:32,557 copying xmipp3/tests/test_protocol_ctf_consensus.py -> build/lib/xmipp3/tests 2026-02-11T16:23:32,559 copying xmipp3/tests/test_protocol_likelihood.py -> build/lib/xmipp3/tests 2026-02-11T16:23:32,561 copying xmipp3/tests/test_protocol_validate_fscq.py -> build/lib/xmipp3/tests 2026-02-11T16:23:32,563 copying xmipp3/tests/__init__.py -> build/lib/xmipp3/tests 2026-02-11T16:23:32,565 copying xmipp3/tests/test_protocols_localdeblur.py -> build/lib/xmipp3/tests 2026-02-11T16:23:32,567 copying xmipp3/tests/test_protocol_multiple_fsc.py -> build/lib/xmipp3/tests 2026-02-11T16:23:32,569 copying xmipp3/tests/test_protocols_highres.py -> build/lib/xmipp3/tests 2026-02-11T16:23:32,571 copying xmipp3/tests/test_protocols_monores.py -> build/lib/xmipp3/tests 2026-02-11T16:23:32,573 copying xmipp3/tests/test_protocol_consensus_classes3D.py -> build/lib/xmipp3/tests 2026-02-11T16:23:32,575 copying xmipp3/tests/test_protocol_angular_graph_consistency.py -> build/lib/xmipp3/tests 2026-02-11T16:23:32,577 copying xmipp3/tests/test_protocol_reconstruct_fourier.py -> build/lib/xmipp3/tests 2026-02-11T16:23:32,579 copying xmipp3/tests/test_protocol_apply_transformation_matrix.py -> build/lib/xmipp3/tests 2026-02-11T16:23:32,581 copying xmipp3/tests/test_protocol_screen_deepConsensus.py -> build/lib/xmipp3/tests 2026-02-11T16:23:32,584 copying xmipp3/tests/test_protocol_simulate_ctf.py -> build/lib/xmipp3/tests 2026-02-11T16:23:32,586 copying xmipp3/tests/test_protocols_xmipp_movies.py -> build/lib/xmipp3/tests 2026-02-11T16:23:32,588 copying xmipp3/tests/test_protocols_deepVolPostprocessing.py -> build/lib/xmipp3/tests 2026-02-11T16:23:32,591 copying xmipp3/tests/test_protocols_continuousflex.py -> build/lib/xmipp3/tests 2026-02-11T16:23:32,593 copying xmipp3/tests/test_protocol_extract_asymmetric_unit.py -> build/lib/xmipp3/tests 2026-02-11T16:23:32,596 copying xmipp3/tests/test_protocols_deepres.py -> build/lib/xmipp3/tests 2026-02-11T16:23:32,598 copying xmipp3/tests/test_protocol_split_frames.py -> build/lib/xmipp3/tests 2026-02-11T16:23:32,600 copying xmipp3/tests/test_protocols_fso.py -> build/lib/xmipp3/tests 2026-02-11T16:23:32,602 copying xmipp3/tests/test_protocol_multireference_alignability.py -> build/lib/xmipp3/tests 2026-02-11T16:23:32,604 copying xmipp3/tests/test_protocols_xmipp_3d.py -> build/lib/xmipp3/tests 2026-02-11T16:23:32,608 copying xmipp3/tests/test_protocols_local_defocus.py -> build/lib/xmipp3/tests 2026-02-11T16:23:32,610 copying xmipp3/tests/test_protocols_xmipp_mics.py -> build/lib/xmipp3/tests 2026-02-11T16:23:32,613 copying xmipp3/tests/test_convert_xmipp.py -> build/lib/xmipp3/tests 2026-02-11T16:23:32,616 copying xmipp3/tests/test_protocol_monodir.py -> build/lib/xmipp3/tests 2026-02-11T16:23:32,618 copying xmipp3/tests/test_protocols_xmipp_movie_resize.py -> build/lib/xmipp3/tests 2026-02-11T16:23:32,620 copying xmipp3/tests/test_protocols_zernike3d.py -> build/lib/xmipp3/tests 2026-02-11T16:23:32,623 creating build/lib/xmipp3/legacy 2026-02-11T16:23:32,624 copying xmipp3/legacy/__init__.py -> build/lib/xmipp3/legacy 2026-02-11T16:23:32,626 creating build/lib/xmipp3/convert 2026-02-11T16:23:32,627 copying xmipp3/convert/__init__.py -> build/lib/xmipp3/convert 2026-02-11T16:23:32,629 copying xmipp3/convert/io_coordinates.py -> build/lib/xmipp3/convert 2026-02-11T16:23:32,631 copying xmipp3/convert/convert.py -> build/lib/xmipp3/convert 2026-02-11T16:23:32,634 copying xmipp3/convert/dataimport.py -> build/lib/xmipp3/convert 2026-02-11T16:23:32,637 creating build/lib/xmipp3/protocols/protocol_preprocess 2026-02-11T16:23:32,638 copying xmipp3/protocols/protocol_preprocess/protocol_create_mask2d.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-02-11T16:23:32,641 copying xmipp3/protocols/protocol_preprocess/protocol_filter.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-02-11T16:23:32,643 copying xmipp3/protocols/protocol_preprocess/protocol_create_mask3d.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-02-11T16:23:32,646 copying xmipp3/protocols/protocol_preprocess/__init__.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-02-11T16:23:32,648 copying xmipp3/protocols/protocol_preprocess/protocol_process.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-02-11T16:23:32,650 copying xmipp3/protocols/protocol_preprocess/protocol_mask.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-02-11T16:23:32,652 copying xmipp3/protocols/protocol_preprocess/geometrical_mask.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-02-11T16:23:32,655 copying xmipp3/protocols/protocol_preprocess/protocol_crop_resize.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-02-11T16:23:32,657 copying xmipp3/protocols/protocol_preprocess/protocol_add_noise.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-02-11T16:23:32,659 copying xmipp3/protocols/protocol_preprocess/protocol_preprocess.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-02-11T16:23:32,662 copying xmipp3/protocols/protocol_preprocess/protocol_image_operate.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-02-11T16:23:32,665 copying xmipp3/protocols/protocol_preprocess/protocol_movie_resize.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-02-11T16:23:32,668 creating build/lib/xmipp3/protocols/protocol_projmatch 2026-02-11T16:23:32,669 copying xmipp3/protocols/protocol_projmatch/projmatch_steps.py -> build/lib/xmipp3/protocols/protocol_projmatch 2026-02-11T16:23:32,672 copying xmipp3/protocols/protocol_projmatch/projmatch_form.py -> build/lib/xmipp3/protocols/protocol_projmatch 2026-02-11T16:23:32,675 copying xmipp3/protocols/protocol_projmatch/__init__.py -> build/lib/xmipp3/protocols/protocol_projmatch 2026-02-11T16:23:32,677 copying xmipp3/protocols/protocol_projmatch/projmatch_initialize.py -> build/lib/xmipp3/protocols/protocol_projmatch 2026-02-11T16:23:32,679 copying xmipp3/protocols/protocol_projmatch/protocol_projmatch.py -> build/lib/xmipp3/protocols/protocol_projmatch 2026-02-11T16:23:32,683 creating build/lib/xmipp3/legacy/protocols 2026-02-11T16:23:32,684 copying xmipp3/legacy/protocols/protocol_particle_boxsize.py -> build/lib/xmipp3/legacy/protocols 2026-02-11T16:23:32,686 copying xmipp3/legacy/protocols/protocol_angular_resolution_alignment.py -> build/lib/xmipp3/legacy/protocols 2026-02-11T16:23:32,688 copying xmipp3/legacy/protocols/protocol_movie_opticalflow.py -> build/lib/xmipp3/legacy/protocols 2026-02-11T16:23:32,691 copying xmipp3/legacy/protocols/protocol_subtract_projection.py -> build/lib/xmipp3/legacy/protocols 2026-02-11T16:23:32,694 copying xmipp3/legacy/protocols/protocol_kmeans_clustering.py -> build/lib/xmipp3/legacy/protocols 2026-02-11T16:23:32,696 copying xmipp3/legacy/protocols/__init__.py -> build/lib/xmipp3/legacy/protocols 2026-02-11T16:23:32,698 copying xmipp3/legacy/protocols/protocol_metaprotocol_golden_highres.py -> build/lib/xmipp3/legacy/protocols 2026-02-11T16:23:32,700 copying xmipp3/legacy/protocols/protocol_classification_gpuCorr.py -> build/lib/xmipp3/legacy/protocols 2026-02-11T16:23:32,703 copying xmipp3/legacy/protocols/protocol_movie_average.py -> build/lib/xmipp3/legacy/protocols 2026-02-11T16:23:32,706 copying xmipp3/legacy/protocols/protocol_deep_denoising.py -> build/lib/xmipp3/legacy/protocols 2026-02-11T16:23:32,708 copying xmipp3/legacy/protocols/protocol_enrich.py -> build/lib/xmipp3/legacy/protocols 2026-02-11T16:23:32,711 copying xmipp3/legacy/protocols/protocol_apply_deformation_zernike3d.py -> build/lib/xmipp3/legacy/protocols 2026-02-11T16:23:32,713 copying xmipp3/legacy/protocols/protocol_deep_center.py -> build/lib/xmipp3/legacy/protocols 2026-02-11T16:23:32,716 copying xmipp3/legacy/protocols/protocol_deep_center_predict.py -> build/lib/xmipp3/legacy/protocols 2026-02-11T16:23:32,718 copying xmipp3/legacy/protocols/protocol_rotational_spectra.py -> build/lib/xmipp3/legacy/protocols 2026-02-11T16:23:32,720 copying xmipp3/legacy/protocols/protocol_screen_deeplearning.py -> build/lib/xmipp3/legacy/protocols 2026-02-11T16:23:32,722 copying xmipp3/legacy/protocols/protocol_split_volume_hierarchical_cluster.py -> build/lib/xmipp3/legacy/protocols 2026-02-11T16:23:32,725 copying xmipp3/legacy/protocols/protocol_classify_kmeans2d.py -> build/lib/xmipp3/legacy/protocols 2026-02-11T16:23:32,727 copying xmipp3/legacy/protocols/protocol_metaprotocol_create_subset.py -> build/lib/xmipp3/legacy/protocols 2026-02-11T16:23:32,729 copying xmipp3/legacy/protocols/protocol_mltomo.py -> build/lib/xmipp3/legacy/protocols 2026-02-11T16:23:32,732 copying xmipp3/legacy/protocols/protocol_extract_particles_movies.py -> build/lib/xmipp3/legacy/protocols 2026-02-11T16:23:32,734 copying xmipp3/legacy/protocols/protocol_classification_gpuCorr_semi.py -> build/lib/xmipp3/legacy/protocols 2026-02-11T16:23:32,736 copying xmipp3/legacy/protocols/protocol_reconstruct_heterogeneous.py -> build/lib/xmipp3/legacy/protocols 2026-02-11T16:23:32,739 copying xmipp3/legacy/protocols/protocol_metaprotocol_create_output.py -> build/lib/xmipp3/legacy/protocols 2026-02-11T16:23:32,741 copying xmipp3/legacy/protocols/protocol_solid_angles.py -> build/lib/xmipp3/legacy/protocols 2026-02-11T16:23:32,744 copying xmipp3/legacy/protocols/protocol_split_volume.py -> build/lib/xmipp3/legacy/protocols 2026-02-11T16:23:32,746 copying xmipp3/legacy/protocols/protocol_classification_gpuCorr_full.py -> build/lib/xmipp3/legacy/protocols 2026-02-11T16:23:32,749 copying xmipp3/legacy/protocols/protocol_metaprotocol_discrete_heterogeneity_scheduler.py -> build/lib/xmipp3/legacy/protocols 2026-02-11T16:23:32,752 copying xmipp3/legacy/protocols/protocol_deep_align.py -> build/lib/xmipp3/legacy/protocols 2026-02-11T16:23:32,755 creating build/lib/xmipp3/legacy/viewers 2026-02-11T16:23:32,756 copying xmipp3/legacy/viewers/viewer_deep_align.py -> build/lib/xmipp3/legacy/viewers 2026-02-11T16:23:32,758 copying xmipp3/legacy/viewers/viewer_mltomo.py -> build/lib/xmipp3/legacy/viewers 2026-02-11T16:23:32,761 copying xmipp3/legacy/viewers/viewer_solid_angles.py -> build/lib/xmipp3/legacy/viewers 2026-02-11T16:23:32,762 copying xmipp3/legacy/viewers/viewer_metaprotocol_golden_highres.py -> build/lib/xmipp3/legacy/viewers 2026-02-11T16:23:32,765 copying xmipp3/legacy/viewers/viewer_angular_resolution_alignment.py -> build/lib/xmipp3/legacy/viewers 2026-02-11T16:23:32,767 copying xmipp3/legacy/viewers/viewer_split_volume.py -> build/lib/xmipp3/legacy/viewers 2026-02-11T16:23:32,770 creating build/lib/xmipp3/legacy/tests 2026-02-11T16:23:32,771 copying xmipp3/legacy/tests/test_protocols_gpuCorr_semiStreaming.py -> build/lib/xmipp3/legacy/tests 2026-02-11T16:23:32,773 copying xmipp3/legacy/tests/test_protocols_solid_angles.py -> build/lib/xmipp3/legacy/tests 2026-02-11T16:23:32,775 copying xmipp3/legacy/tests/test_protocols_metaprotocol_golden_highres.py -> build/lib/xmipp3/legacy/tests 2026-02-11T16:23:32,777 copying xmipp3/legacy/tests/test_protocols_mixed_movies.py -> build/lib/xmipp3/legacy/tests 2026-02-11T16:23:32,779 copying xmipp3/legacy/tests/test_protocols_xmipp_movies.py -> build/lib/xmipp3/legacy/tests 2026-02-11T16:23:32,781 copying xmipp3/legacy/tests/test_protocol_deep_denoising.py -> build/lib/xmipp3/legacy/tests 2026-02-11T16:23:32,783 copying xmipp3/legacy/tests/test_protocols_gpuCorr_fullStreaming.py -> build/lib/xmipp3/legacy/tests 2026-02-11T16:23:32,786 copying xmipp3/legacy/tests/test_protocols_angular_resolution_alignment.py -> build/lib/xmipp3/legacy/tests 2026-02-11T16:23:32,788 copying xmipp3/legacy/tests/test_protocols_gpuCorr_classifier.py -> build/lib/xmipp3/legacy/tests 2026-02-11T16:23:32,790 copying xmipp3/legacy/tests/test_protocols_metaprotocol_heterogeneity.py -> build/lib/xmipp3/legacy/tests 2026-02-11T16:23:32,792 copying xmipp3/legacy/tests/test_protocols_subtract_projection.py -> build/lib/xmipp3/legacy/tests 2026-02-11T16:23:32,794 running egg_info 2026-02-11T16:23:32,804 writing scipion_em_xmipp.egg-info/PKG-INFO 2026-02-11T16:23:32,807 writing dependency_links to scipion_em_xmipp.egg-info/dependency_links.txt 2026-02-11T16:23:32,808 writing entry points to scipion_em_xmipp.egg-info/entry_points.txt 2026-02-11T16:23:32,809 writing requirements to scipion_em_xmipp.egg-info/requires.txt 2026-02-11T16:23:32,810 writing top-level names to scipion_em_xmipp.egg-info/top_level.txt 2026-02-11T16:23:32,837 reading manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt' 2026-02-11T16:23:32,852 reading manifest template 'MANIFEST.in' 2026-02-11T16:23:32,854 adding license file 'LICENSE' 2026-02-11T16:23:32,868 writing manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt' 2026-02-11T16:23:32,878 copying xmipp3/protocols.conf -> build/lib/xmipp3 2026-02-11T16:23:32,881 copying xmipp3/xmipp_logo.png -> build/lib/xmipp3 2026-02-11T16:23:32,885 copying xmipp3/xmipp_logo_devel.png -> build/lib/xmipp3 2026-02-11T16:23:32,918 installing to build/bdist.linux-armv7l/wheel 2026-02-11T16:23:32,919 running install 2026-02-11T16:23:32,942 running install_lib 2026-02-11T16:23:32,947 creating build/bdist.linux-armv7l/wheel 2026-02-11T16:23:32,950 creating build/bdist.linux-armv7l/wheel/xmipp3 2026-02-11T16:23:32,951 copying build/lib/xmipp3/xmipp_logo.png -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-02-11T16:23:32,954 copying build/lib/xmipp3/xmipp_logo_devel.png -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-02-11T16:23:32,969 creating build/bdist.linux-armv7l/wheel/xmipp3/protocols 2026-02-11T16:23:32,970 copying build/lib/xmipp3/protocols/protocol_reconstruct_significant.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:32,974 copying build/lib/xmipp3/protocols/protocol_pick_noise.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:32,976 copying build/lib/xmipp3/protocols/protocol_classes_2d_mapping.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:32,979 copying build/lib/xmipp3/protocols/protocol_cl2d_align.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:32,982 copying build/lib/xmipp3/protocols/protocol_local_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:32,984 copying build/lib/xmipp3/protocols/protocol_postProcessing_deepPostProcessing.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:32,987 copying build/lib/xmipp3/protocols/protocol_shift_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:32,990 copying build/lib/xmipp3/protocols/protocol_reconstruct_fourier.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:32,993 copying build/lib/xmipp3/protocols/protocol_ml2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:32,996 copying build/lib/xmipp3/protocols/protocol_cl2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:32,999 copying build/lib/xmipp3/protocols/protocol_normalize_strain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,002 copying build/lib/xmipp3/protocols/protocol_trigger_data.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,005 copying build/lib/xmipp3/protocols/protocol_ctf_micrographs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,008 copying build/lib/xmipp3/protocols/protocol_classify_pca.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,011 copying build/lib/xmipp3/protocols/protocol_particle_pick_pairs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,013 copying build/lib/xmipp3/protocols/protocol_align_volume_and_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,016 copying build/lib/xmipp3/protocols/protocol_phantom_create.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,018 copying build/lib/xmipp3/protocols/protocol_resolution_deepres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,021 copying build/lib/xmipp3/protocols/protocol_deep_hand.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,023 copying build/lib/xmipp3/protocols/protocol_multiple_fscs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,026 copying build/lib/xmipp3/protocols/protocol_reconstruct_swarm.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,029 copying build/lib/xmipp3/protocols/protocol_subtract_projection.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,032 copying build/lib/xmipp3/protocols/protocol_volume_local_adjust.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,034 copying build/lib/xmipp3/protocols/protocol_ctf_correct_wiener2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,037 copying build/lib/xmipp3/protocols/protocol_convert_pdb.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,039 copying build/lib/xmipp3/protocols/protocol_particle_pick_automatic.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,042 copying build/lib/xmipp3/protocols/protocol_movie_gain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,045 copying build/lib/xmipp3/protocols/protocol_denoise_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,048 copying build/lib/xmipp3/protocols/protocol_validate_overfitting.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,051 copying build/lib/xmipp3/protocols/protocol_preprocess_micrographs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,054 copying build/lib/xmipp3/protocols/protocol_movie_alignment_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,058 copying build/lib/xmipp3/protocols/protocol_angular_graph_consistency.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,061 copying build/lib/xmipp3/protocols/protocol_movie_max_shift.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,064 copying build/lib/xmipp3/protocols/protocol_apply_transformation_matrix.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,066 copying build/lib/xmipp3/protocols/protocol_rotational_symmetry.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,069 copying build/lib/xmipp3/protocols/protocol_align_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,072 copying build/lib/xmipp3/protocols/protocol_apply_tilt_to_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,074 copying build/lib/xmipp3/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,077 copying build/lib/xmipp3/protocols/protocol_write_testP.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,079 copying build/lib/xmipp3/protocols/protocol_kerdensom.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,082 copying build/lib/xmipp3/protocols/protocol_deep_micrograph_screen.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,086 copying build/lib/xmipp3/protocols/protocol_break_symmetry.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,089 copying build/lib/xmipp3/protocols/protocol_movie_split_frames.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,092 copying build/lib/xmipp3/protocols/protocol_volume_strain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,094 copying build/lib/xmipp3/protocols/protocol_volume_adjust_sub.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,097 copying build/lib/xmipp3/protocols/protocol_ransac.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,099 copying build/lib/xmipp3/protocols/protocol_volume_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,102 copying build/lib/xmipp3/protocols/protocol_apply_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,104 copying build/lib/xmipp3/protocols/protocol_extract_particles_pairs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,106 copying build/lib/xmipp3/protocols/protocol_simulate_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,109 copying build/lib/xmipp3/protocols/protocol_center_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,111 copying build/lib/xmipp3/protocols/protocol_ctf_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,114 copying build/lib/xmipp3/protocols/protocol_structure_map.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,116 copying build/lib/xmipp3/protocols/protocol_ctf_defocus_group.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,118 copying build/lib/xmipp3/protocols/protocol_mics_defocus_balancer.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,120 copying build/lib/xmipp3/protocols/protocol_validate_nontilt.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,123 copying build/lib/xmipp3/protocols/protocol_validate_fscq.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,125 copying build/lib/xmipp3/protocols/protocol_multireference_alignability.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,129 creating build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_preprocess 2026-02-11T16:23:33,130 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_create_mask2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-02-11T16:23:33,132 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_filter.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-02-11T16:23:33,134 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_create_mask3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-02-11T16:23:33,137 copying build/lib/xmipp3/protocols/protocol_preprocess/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-02-11T16:23:33,139 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_process.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-02-11T16:23:33,141 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_mask.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-02-11T16:23:33,143 copying build/lib/xmipp3/protocols/protocol_preprocess/geometrical_mask.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-02-11T16:23:33,146 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_crop_resize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-02-11T16:23:33,148 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_add_noise.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-02-11T16:23:33,151 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_preprocess.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-02-11T16:23:33,153 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_image_operate.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-02-11T16:23:33,156 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_movie_resize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-02-11T16:23:33,158 copying build/lib/xmipp3/protocols/protocol_resolution_fso.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,160 copying build/lib/xmipp3/protocols/protocol_helical_parameters.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,163 copying build/lib/xmipp3/protocols/protocol_classify_pca_streaming.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,165 copying build/lib/xmipp3/protocols/protocol_particle_pick_remove_duplicates.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,168 copying build/lib/xmipp3/protocols/protocol_generate_reprojections.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,170 copying build/lib/xmipp3/protocols/protocol_assignment_tilt_pair.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,173 copying build/lib/xmipp3/protocols/protocol_movie_dose_analysis.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,176 copying build/lib/xmipp3/protocols/protocol_create_gallery.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,178 copying build/lib/xmipp3/protocols/protocol_volume_local_sharpening.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,181 copying build/lib/xmipp3/protocols/protocol_core_analysis.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,183 copying build/lib/xmipp3/protocols/protocol_reconstruct_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,187 copying build/lib/xmipp3/protocols/protocol_screen_deepConsensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,191 creating build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_projmatch 2026-02-11T16:23:33,192 copying build/lib/xmipp3/protocols/protocol_projmatch/projmatch_steps.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch 2026-02-11T16:23:33,194 copying build/lib/xmipp3/protocols/protocol_projmatch/projmatch_form.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch 2026-02-11T16:23:33,197 copying build/lib/xmipp3/protocols/protocol_projmatch/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch 2026-02-11T16:23:33,199 copying build/lib/xmipp3/protocols/protocol_projmatch/projmatch_initialize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch 2026-02-11T16:23:33,201 copying build/lib/xmipp3/protocols/protocol_projmatch/protocol_projmatch.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch 2026-02-11T16:23:33,204 copying build/lib/xmipp3/protocols/protocol_resolution3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,207 copying build/lib/xmipp3/protocols/protocol_cl2d_clustering.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,209 copying build/lib/xmipp3/protocols/protocol_extract_asymmetric_unit.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,211 copying build/lib/xmipp3/protocols/protocol_compare_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,214 copying build/lib/xmipp3/protocols/protocol_rotate_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,216 copying build/lib/xmipp3/protocols/protocol_ctf_correct_phase.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,218 copying build/lib/xmipp3/protocols/protocol_resolution_directional.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,220 copying build/lib/xmipp3/protocols/protocol_shift_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,222 copying build/lib/xmipp3/protocols/protocol_volume_deform_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,225 copying build/lib/xmipp3/protocols/protocol_consensus_classes.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,227 copying build/lib/xmipp3/protocols/protocol_structure_map_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,230 copying build/lib/xmipp3/protocols/protocol_compare_reprojections.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,233 copying build/lib/xmipp3/protocols/protocol_compute_likelihood.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,235 copying build/lib/xmipp3/protocols/protocol_consensus_local_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,238 copying build/lib/xmipp3/protocols/protocol_resolution_bfactor.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,240 copying build/lib/xmipp3/protocols/protocol_particle_pick.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,242 copying build/lib/xmipp3/protocols/protocol_flexalign.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,245 copying build/lib/xmipp3/protocols/protocol_tilt_analysis.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,247 copying build/lib/xmipp3/protocols/protocol_eliminate_empty_images.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,250 copying build/lib/xmipp3/protocols/protocol_screen_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,254 copying build/lib/xmipp3/protocols/protocol_extract_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,257 copying build/lib/xmipp3/protocols/protocol_random_conical_tilt.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,261 copying build/lib/xmipp3/protocols/protocol_write_testC.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,263 copying build/lib/xmipp3/protocols/protocol_apply_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,265 copying build/lib/xmipp3/protocols/protocol_analyze_local_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,268 copying build/lib/xmipp3/protocols/protocol_particle_pick_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,270 copying build/lib/xmipp3/protocols/protocol_resolution_monogenic_signal.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-11T16:23:33,273 copying build/lib/xmipp3/protocolsCollectInfo.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-02-11T16:23:33,276 copying build/lib/xmipp3/programs.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-02-11T16:23:33,278 copying build/lib/xmipp3/bibtex.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-02-11T16:23:33,281 copying build/lib/xmipp3/logParser.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-02-11T16:23:33,284 copying build/lib/xmipp3/utils.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-02-11T16:23:33,286 copying build/lib/xmipp3/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-02-11T16:23:33,289 copying build/lib/xmipp3/checkProtocolsConf.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-02-11T16:23:33,292 creating build/bdist.linux-armv7l/wheel/xmipp3/viewers 2026-02-11T16:23:33,294 copying build/lib/xmipp3/viewers/viewer_movie_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-11T16:23:33,296 copying build/lib/xmipp3/viewers/plotter.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-11T16:23:33,298 copying build/lib/xmipp3/viewers/viewer_resolution3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-11T16:23:33,301 copying build/lib/xmipp3/viewers/viewer_resolution_monogenic_signal.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-11T16:23:33,304 copying build/lib/xmipp3/viewers/viewer_validate_fscq.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-11T16:23:33,307 copying build/lib/xmipp3/viewers/viewer_volume_deform_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-11T16:23:33,309 copying build/lib/xmipp3/viewers/viewer_deep_micrograph_cleaner.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-11T16:23:33,312 copying build/lib/xmipp3/viewers/viewer_subtract_projection.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-11T16:23:33,314 copying build/lib/xmipp3/viewers/viewer_extract_asymmetric_unit.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-11T16:23:33,316 copying build/lib/xmipp3/viewers/viewer_LL_matrix.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-11T16:23:33,319 copying build/lib/xmipp3/viewers/viewer_eliminate_empty_images.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-11T16:23:33,321 copying build/lib/xmipp3/viewers/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-11T16:23:33,323 copying build/lib/xmipp3/viewers/viewer_local_sharpening.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-11T16:23:33,325 copying build/lib/xmipp3/viewers/viewer_dose_analysis.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-11T16:23:33,328 copying build/lib/xmipp3/viewers/viewer_deep_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-11T16:23:33,330 copying build/lib/xmipp3/viewers/viewer_cl2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-11T16:23:33,332 copying build/lib/xmipp3/viewers/viewer_projmatch.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-11T16:23:33,336 copying build/lib/xmipp3/viewers/viewer_resolution_deepres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-11T16:23:33,339 copying build/lib/xmipp3/viewers/viewer_resolution_fso.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-11T16:23:33,342 copying build/lib/xmipp3/viewers/viewer_ransac.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-11T16:23:33,345 copying build/lib/xmipp3/viewers/viewer_consensus_classes.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-11T16:23:33,347 copying build/lib/xmipp3/viewers/viewer_ml2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-11T16:23:33,350 copying build/lib/xmipp3/viewers/viewer_cl2d_clustering.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-11T16:23:33,352 copying build/lib/xmipp3/viewers/viewer_resolution_bfactor.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-11T16:23:33,355 copying build/lib/xmipp3/viewers/viewer_deepEMHancer.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-11T16:23:33,357 copying build/lib/xmipp3/viewers/viewer_swarm.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-11T16:23:33,360 copying build/lib/xmipp3/viewers/viewer_apply_tilt_to_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-11T16:23:33,363 copying build/lib/xmipp3/viewers/viewer_volume_subtraction.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-11T16:23:33,367 copying build/lib/xmipp3/viewers/viewer_analyze_local_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-11T16:23:33,370 copying build/lib/xmipp3/viewers/viewer_reconstruct_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-11T16:23:33,373 copying build/lib/xmipp3/viewers/viewer_validate_overfitting.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-11T16:23:33,377 copying build/lib/xmipp3/viewers/viewer_structure_map.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-11T16:23:33,380 copying build/lib/xmipp3/viewers/viewer_resolution_directional.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-11T16:23:33,384 copying build/lib/xmipp3/viewers/viewer_volume_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-11T16:23:33,387 copying build/lib/xmipp3/viewers/viewer_validate_nontilt.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-11T16:23:33,390 copying build/lib/xmipp3/viewers/viewer_pdb_deform_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-11T16:23:33,393 copying build/lib/xmipp3/viewers/viewer_volume_strain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-11T16:23:33,396 copying build/lib/xmipp3/viewers/viewer.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-11T16:23:33,399 copying build/lib/xmipp3/viewers/viewer_normalize_strain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-11T16:23:33,402 copying build/lib/xmipp3/viewers/viewer_ctf_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-11T16:23:33,406 copying build/lib/xmipp3/base.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-02-11T16:23:33,410 creating build/bdist.linux-armv7l/wheel/xmipp3/tests 2026-02-11T16:23:33,412 copying build/lib/xmipp3/tests/test_protocols_deepcenter_predict.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-11T16:23:33,415 copying build/lib/xmipp3/tests/test_protocols_realignment_classes.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-11T16:23:33,419 copying build/lib/xmipp3/tests/test_protocols_xmipp_2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-11T16:23:33,424 copying build/lib/xmipp3/tests/test_protocols_add_noise.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-11T16:23:33,427 copying build/lib/xmipp3/tests/test_protocol_compare_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-11T16:23:33,430 copying build/lib/xmipp3/tests/test_protocol_validate_overfitting.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-11T16:23:33,433 copying build/lib/xmipp3/tests/test_protocol_ctf_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-11T16:23:33,436 copying build/lib/xmipp3/tests/test_protocol_likelihood.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-11T16:23:33,438 copying build/lib/xmipp3/tests/test_protocol_validate_fscq.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-11T16:23:33,441 copying build/lib/xmipp3/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-11T16:23:33,443 copying build/lib/xmipp3/tests/test_protocols_localdeblur.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-11T16:23:33,446 copying build/lib/xmipp3/tests/test_protocol_multiple_fsc.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-11T16:23:33,448 copying build/lib/xmipp3/tests/test_protocols_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-11T16:23:33,451 copying build/lib/xmipp3/tests/test_protocols_monores.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-11T16:23:33,454 copying build/lib/xmipp3/tests/test_protocol_consensus_classes3D.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-11T16:23:33,457 copying build/lib/xmipp3/tests/test_protocol_angular_graph_consistency.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-11T16:23:33,459 copying build/lib/xmipp3/tests/test_protocol_reconstruct_fourier.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-11T16:23:33,461 copying build/lib/xmipp3/tests/test_protocol_apply_transformation_matrix.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-11T16:23:33,463 copying build/lib/xmipp3/tests/test_protocol_screen_deepConsensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-11T16:23:33,466 copying build/lib/xmipp3/tests/test_protocol_simulate_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-11T16:23:33,468 copying build/lib/xmipp3/tests/test_protocols_xmipp_movies.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-11T16:23:33,471 copying build/lib/xmipp3/tests/test_protocols_deepVolPostprocessing.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-11T16:23:33,473 copying build/lib/xmipp3/tests/test_protocols_continuousflex.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-11T16:23:33,475 copying build/lib/xmipp3/tests/test_protocol_extract_asymmetric_unit.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-11T16:23:33,478 copying build/lib/xmipp3/tests/test_protocols_deepres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-11T16:23:33,479 copying build/lib/xmipp3/tests/test_protocol_split_frames.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-11T16:23:33,482 copying build/lib/xmipp3/tests/test_protocols_fso.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-11T16:23:33,484 copying build/lib/xmipp3/tests/test_protocol_multireference_alignability.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-11T16:23:33,486 copying build/lib/xmipp3/tests/test_protocols_xmipp_3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-11T16:23:33,489 copying build/lib/xmipp3/tests/test_protocols_local_defocus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-11T16:23:33,492 copying build/lib/xmipp3/tests/test_protocols_xmipp_mics.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-11T16:23:33,495 copying build/lib/xmipp3/tests/test_convert_xmipp.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-11T16:23:33,498 copying build/lib/xmipp3/tests/test_protocol_monodir.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-11T16:23:33,500 copying build/lib/xmipp3/tests/test_protocols_xmipp_movie_resize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-11T16:23:33,502 copying build/lib/xmipp3/tests/test_protocols_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-11T16:23:33,504 copying build/lib/xmipp3/protocols.conf -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-02-11T16:23:33,507 copying build/lib/xmipp3/version.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-02-11T16:23:33,509 creating build/bdist.linux-armv7l/wheel/xmipp3/legacy 2026-02-11T16:23:33,511 creating build/bdist.linux-armv7l/wheel/xmipp3/legacy/protocols 2026-02-11T16:23:33,512 copying build/lib/xmipp3/legacy/protocols/protocol_particle_boxsize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-11T16:23:33,515 copying build/lib/xmipp3/legacy/protocols/protocol_angular_resolution_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-11T16:23:33,517 copying build/lib/xmipp3/legacy/protocols/protocol_movie_opticalflow.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-11T16:23:33,519 copying build/lib/xmipp3/legacy/protocols/protocol_subtract_projection.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-11T16:23:33,522 copying build/lib/xmipp3/legacy/protocols/protocol_kmeans_clustering.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-11T16:23:33,524 copying build/lib/xmipp3/legacy/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-11T16:23:33,525 copying build/lib/xmipp3/legacy/protocols/protocol_metaprotocol_golden_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-11T16:23:33,528 copying build/lib/xmipp3/legacy/protocols/protocol_classification_gpuCorr.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-11T16:23:33,531 copying build/lib/xmipp3/legacy/protocols/protocol_movie_average.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-11T16:23:33,533 copying build/lib/xmipp3/legacy/protocols/protocol_deep_denoising.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-11T16:23:33,536 copying build/lib/xmipp3/legacy/protocols/protocol_enrich.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-11T16:23:33,539 copying build/lib/xmipp3/legacy/protocols/protocol_apply_deformation_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-11T16:23:33,541 copying build/lib/xmipp3/legacy/protocols/protocol_deep_center.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-11T16:23:33,543 copying build/lib/xmipp3/legacy/protocols/protocol_deep_center_predict.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-11T16:23:33,546 copying build/lib/xmipp3/legacy/protocols/protocol_rotational_spectra.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-11T16:23:33,549 copying build/lib/xmipp3/legacy/protocols/protocol_screen_deeplearning.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-11T16:23:33,551 copying build/lib/xmipp3/legacy/protocols/protocol_split_volume_hierarchical_cluster.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-11T16:23:33,554 copying build/lib/xmipp3/legacy/protocols/protocol_classify_kmeans2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-11T16:23:33,556 copying build/lib/xmipp3/legacy/protocols/protocol_metaprotocol_create_subset.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-11T16:23:33,558 copying build/lib/xmipp3/legacy/protocols/protocol_mltomo.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-11T16:23:33,561 copying build/lib/xmipp3/legacy/protocols/protocol_extract_particles_movies.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-11T16:23:33,563 copying build/lib/xmipp3/legacy/protocols/protocol_classification_gpuCorr_semi.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-11T16:23:33,566 copying build/lib/xmipp3/legacy/protocols/protocol_reconstruct_heterogeneous.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-11T16:23:33,569 copying build/lib/xmipp3/legacy/protocols/protocol_metaprotocol_create_output.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-11T16:23:33,571 copying build/lib/xmipp3/legacy/protocols/protocol_solid_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-11T16:23:33,573 copying build/lib/xmipp3/legacy/protocols/protocol_split_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-11T16:23:33,576 copying build/lib/xmipp3/legacy/protocols/protocol_classification_gpuCorr_full.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-11T16:23:33,578 copying build/lib/xmipp3/legacy/protocols/protocol_metaprotocol_discrete_heterogeneity_scheduler.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-11T16:23:33,581 copying build/lib/xmipp3/legacy/protocols/protocol_deep_align.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-11T16:23:33,584 copying build/lib/xmipp3/legacy/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy 2026-02-11T16:23:33,586 creating build/bdist.linux-armv7l/wheel/xmipp3/legacy/viewers 2026-02-11T16:23:33,587 copying build/lib/xmipp3/legacy/viewers/viewer_deep_align.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers 2026-02-11T16:23:33,589 copying build/lib/xmipp3/legacy/viewers/viewer_mltomo.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers 2026-02-11T16:23:33,591 copying build/lib/xmipp3/legacy/viewers/viewer_solid_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers 2026-02-11T16:23:33,593 copying build/lib/xmipp3/legacy/viewers/viewer_metaprotocol_golden_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers 2026-02-11T16:23:33,596 copying build/lib/xmipp3/legacy/viewers/viewer_angular_resolution_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers 2026-02-11T16:23:33,598 copying build/lib/xmipp3/legacy/viewers/viewer_split_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers 2026-02-11T16:23:33,600 creating build/bdist.linux-armv7l/wheel/xmipp3/legacy/tests 2026-02-11T16:23:33,602 copying build/lib/xmipp3/legacy/tests/test_protocols_gpuCorr_semiStreaming.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-02-11T16:23:33,604 copying build/lib/xmipp3/legacy/tests/test_protocols_solid_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-02-11T16:23:33,606 copying build/lib/xmipp3/legacy/tests/test_protocols_metaprotocol_golden_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-02-11T16:23:33,608 copying build/lib/xmipp3/legacy/tests/test_protocols_mixed_movies.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-02-11T16:23:33,610 copying build/lib/xmipp3/legacy/tests/test_protocols_xmipp_movies.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-02-11T16:23:33,612 copying build/lib/xmipp3/legacy/tests/test_protocol_deep_denoising.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-02-11T16:23:33,614 copying build/lib/xmipp3/legacy/tests/test_protocols_gpuCorr_fullStreaming.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-02-11T16:23:33,616 copying build/lib/xmipp3/legacy/tests/test_protocols_angular_resolution_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-02-11T16:23:33,618 copying build/lib/xmipp3/legacy/tests/test_protocols_gpuCorr_classifier.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-02-11T16:23:33,620 copying build/lib/xmipp3/legacy/tests/test_protocols_metaprotocol_heterogeneity.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-02-11T16:23:33,622 copying build/lib/xmipp3/legacy/tests/test_protocols_subtract_projection.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-02-11T16:23:33,625 copying build/lib/xmipp3/wizards.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-02-11T16:23:33,627 copying build/lib/xmipp3/constants.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-02-11T16:23:33,630 creating build/bdist.linux-armv7l/wheel/xmipp3/convert 2026-02-11T16:23:33,631 copying build/lib/xmipp3/convert/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/convert 2026-02-11T16:23:33,633 copying build/lib/xmipp3/convert/io_coordinates.py -> build/bdist.linux-armv7l/wheel/./xmipp3/convert 2026-02-11T16:23:33,635 copying build/lib/xmipp3/convert/convert.py -> build/bdist.linux-armv7l/wheel/./xmipp3/convert 2026-02-11T16:23:33,638 copying build/lib/xmipp3/convert/dataimport.py -> build/bdist.linux-armv7l/wheel/./xmipp3/convert 2026-02-11T16:23:33,640 running install_egg_info 2026-02-11T16:23:33,645 Copying scipion_em_xmipp.egg-info to build/bdist.linux-armv7l/wheel/./scipion_em_xmipp-26.2.0-py3.11.egg-info 2026-02-11T16:23:33,660 running install_scripts 2026-02-11T16:23:33,672 creating build/bdist.linux-armv7l/wheel/scipion_em_xmipp-26.2.0.dist-info/WHEEL 2026-02-11T16:23:33,675 creating '/tmp/pip-wheel-ej6z1z9a/.tmp-by0yqref/scipion_em_xmipp-26.2.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-02-11T16:23:33,684 adding 'scipion_em_xmipp-26.2.0.dist-info/licenses/LICENSE' 2026-02-11T16:23:33,687 adding 'xmipp3/__init__.py' 2026-02-11T16:23:33,690 adding 'xmipp3/base.py' 2026-02-11T16:23:33,693 adding 'xmipp3/bibtex.py' 2026-02-11T16:23:33,695 adding 'xmipp3/checkProtocolsConf.py' 2026-02-11T16:23:33,697 adding 'xmipp3/constants.py' 2026-02-11T16:23:33,698 adding 'xmipp3/logParser.py' 2026-02-11T16:23:33,701 adding 'xmipp3/programs.py' 2026-02-11T16:23:33,703 adding 'xmipp3/protocols.conf' 2026-02-11T16:23:33,705 adding 'xmipp3/protocolsCollectInfo.py' 2026-02-11T16:23:33,707 adding 'xmipp3/utils.py' 2026-02-11T16:23:33,708 adding 'xmipp3/version.py' 2026-02-11T16:23:33,710 adding 'xmipp3/wizards.py' 2026-02-11T16:23:33,722 adding 'xmipp3/xmipp_logo.png' 2026-02-11T16:23:33,812 adding 'xmipp3/xmipp_logo_devel.png' 2026-02-11T16:23:33,819 adding 'xmipp3/convert/__init__.py' 2026-02-11T16:23:33,826 adding 'xmipp3/convert/convert.py' 2026-02-11T16:23:33,829 adding 'xmipp3/convert/dataimport.py' 2026-02-11T16:23:33,830 adding 'xmipp3/convert/io_coordinates.py' 2026-02-11T16:23:33,832 adding 'xmipp3/legacy/__init__.py' 2026-02-11T16:23:33,834 adding 'xmipp3/legacy/protocols/__init__.py' 2026-02-11T16:23:33,836 adding 'xmipp3/legacy/protocols/protocol_angular_resolution_alignment.py' 2026-02-11T16:23:33,837 adding 'xmipp3/legacy/protocols/protocol_apply_deformation_zernike3d.py' 2026-02-11T16:23:33,841 adding 'xmipp3/legacy/protocols/protocol_classification_gpuCorr.py' 2026-02-11T16:23:33,846 adding 'xmipp3/legacy/protocols/protocol_classification_gpuCorr_full.py' 2026-02-11T16:23:33,849 adding 'xmipp3/legacy/protocols/protocol_classification_gpuCorr_semi.py' 2026-02-11T16:23:33,851 adding 'xmipp3/legacy/protocols/protocol_classify_kmeans2d.py' 2026-02-11T16:23:33,855 adding 'xmipp3/legacy/protocols/protocol_deep_align.py' 2026-02-11T16:23:33,857 adding 'xmipp3/legacy/protocols/protocol_deep_center.py' 2026-02-11T16:23:33,858 adding 'xmipp3/legacy/protocols/protocol_deep_center_predict.py' 2026-02-11T16:23:33,861 adding 'xmipp3/legacy/protocols/protocol_deep_denoising.py' 2026-02-11T16:23:33,864 adding 'xmipp3/legacy/protocols/protocol_enrich.py' 2026-02-11T16:23:33,867 adding 'xmipp3/legacy/protocols/protocol_extract_particles_movies.py' 2026-02-11T16:23:33,868 adding 'xmipp3/legacy/protocols/protocol_kmeans_clustering.py' 2026-02-11T16:23:33,870 adding 'xmipp3/legacy/protocols/protocol_metaprotocol_create_output.py' 2026-02-11T16:23:33,871 adding 'xmipp3/legacy/protocols/protocol_metaprotocol_create_subset.py' 2026-02-11T16:23:33,874 adding 'xmipp3/legacy/protocols/protocol_metaprotocol_discrete_heterogeneity_scheduler.py' 2026-02-11T16:23:33,878 adding 'xmipp3/legacy/protocols/protocol_metaprotocol_golden_highres.py' 2026-02-11T16:23:33,881 adding 'xmipp3/legacy/protocols/protocol_mltomo.py' 2026-02-11T16:23:33,883 adding 'xmipp3/legacy/protocols/protocol_movie_average.py' 2026-02-11T16:23:33,886 adding 'xmipp3/legacy/protocols/protocol_movie_opticalflow.py' 2026-02-11T16:23:33,888 adding 'xmipp3/legacy/protocols/protocol_particle_boxsize.py' 2026-02-11T16:23:33,893 adding 'xmipp3/legacy/protocols/protocol_reconstruct_heterogeneous.py' 2026-02-11T16:23:33,895 adding 'xmipp3/legacy/protocols/protocol_rotational_spectra.py' 2026-02-11T16:23:33,897 adding 'xmipp3/legacy/protocols/protocol_screen_deeplearning.py' 2026-02-11T16:23:33,901 adding 'xmipp3/legacy/protocols/protocol_solid_angles.py' 2026-02-11T16:23:33,903 adding 'xmipp3/legacy/protocols/protocol_split_volume.py' 2026-02-11T16:23:33,907 adding 'xmipp3/legacy/protocols/protocol_split_volume_hierarchical_cluster.py' 2026-02-11T16:23:33,909 adding 'xmipp3/legacy/protocols/protocol_subtract_projection.py' 2026-02-11T16:23:33,911 adding 'xmipp3/legacy/tests/test_protocol_deep_denoising.py' 2026-02-11T16:23:33,913 adding 'xmipp3/legacy/tests/test_protocols_angular_resolution_alignment.py' 2026-02-11T16:23:33,914 adding 'xmipp3/legacy/tests/test_protocols_gpuCorr_classifier.py' 2026-02-11T16:23:33,916 adding 'xmipp3/legacy/tests/test_protocols_gpuCorr_fullStreaming.py' 2026-02-11T16:23:33,917 adding 'xmipp3/legacy/tests/test_protocols_gpuCorr_semiStreaming.py' 2026-02-11T16:23:33,919 adding 'xmipp3/legacy/tests/test_protocols_metaprotocol_golden_highres.py' 2026-02-11T16:23:33,920 adding 'xmipp3/legacy/tests/test_protocols_metaprotocol_heterogeneity.py' 2026-02-11T16:23:33,922 adding 'xmipp3/legacy/tests/test_protocols_mixed_movies.py' 2026-02-11T16:23:33,923 adding 'xmipp3/legacy/tests/test_protocols_solid_angles.py' 2026-02-11T16:23:33,929 adding 'xmipp3/legacy/tests/test_protocols_subtract_projection.py' 2026-02-11T16:23:33,931 adding 'xmipp3/legacy/tests/test_protocols_xmipp_movies.py' 2026-02-11T16:23:33,934 adding 'xmipp3/legacy/viewers/viewer_angular_resolution_alignment.py' 2026-02-11T16:23:33,935 adding 'xmipp3/legacy/viewers/viewer_deep_align.py' 2026-02-11T16:23:33,937 adding 'xmipp3/legacy/viewers/viewer_metaprotocol_golden_highres.py' 2026-02-11T16:23:33,939 adding 'xmipp3/legacy/viewers/viewer_mltomo.py' 2026-02-11T16:23:33,940 adding 'xmipp3/legacy/viewers/viewer_solid_angles.py' 2026-02-11T16:23:33,941 adding 'xmipp3/legacy/viewers/viewer_split_volume.py' 2026-02-11T16:23:33,945 adding 'xmipp3/protocols/__init__.py' 2026-02-11T16:23:33,948 adding 'xmipp3/protocols/protocol_align_volume.py' 2026-02-11T16:23:33,950 adding 'xmipp3/protocols/protocol_align_volume_and_particles.py' 2026-02-11T16:23:33,952 adding 'xmipp3/protocols/protocol_analyze_local_ctf.py' 2026-02-11T16:23:33,956 adding 'xmipp3/protocols/protocol_angular_graph_consistency.py' 2026-02-11T16:23:33,957 adding 'xmipp3/protocols/protocol_apply_alignment.py' 2026-02-11T16:23:33,959 adding 'xmipp3/protocols/protocol_apply_tilt_to_ctf.py' 2026-02-11T16:23:33,961 adding 'xmipp3/protocols/protocol_apply_transformation_matrix.py' 2026-02-11T16:23:33,962 adding 'xmipp3/protocols/protocol_apply_zernike3d.py' 2026-02-11T16:23:33,964 adding 'xmipp3/protocols/protocol_assignment_tilt_pair.py' 2026-02-11T16:23:33,966 adding 'xmipp3/protocols/protocol_break_symmetry.py' 2026-02-11T16:23:33,968 adding 'xmipp3/protocols/protocol_center_particles.py' 2026-02-11T16:23:33,971 adding 'xmipp3/protocols/protocol_cl2d.py' 2026-02-11T16:23:33,973 adding 'xmipp3/protocols/protocol_cl2d_align.py' 2026-02-11T16:23:33,975 adding 'xmipp3/protocols/protocol_cl2d_clustering.py' 2026-02-11T16:23:33,978 adding 'xmipp3/protocols/protocol_classes_2d_mapping.py' 2026-02-11T16:23:33,981 adding 'xmipp3/protocols/protocol_classify_pca.py' 2026-02-11T16:23:33,984 adding 'xmipp3/protocols/protocol_classify_pca_streaming.py' 2026-02-11T16:23:33,986 adding 'xmipp3/protocols/protocol_compare_angles.py' 2026-02-11T16:23:33,989 adding 'xmipp3/protocols/protocol_compare_reprojections.py' 2026-02-11T16:23:33,992 adding 'xmipp3/protocols/protocol_compute_likelihood.py' 2026-02-11T16:23:33,995 adding 'xmipp3/protocols/protocol_consensus_classes.py' 2026-02-11T16:23:33,997 adding 'xmipp3/protocols/protocol_consensus_local_ctf.py' 2026-02-11T16:23:33,999 adding 'xmipp3/protocols/protocol_convert_pdb.py' 2026-02-11T16:23:34,001 adding 'xmipp3/protocols/protocol_core_analysis.py' 2026-02-11T16:23:34,003 adding 'xmipp3/protocols/protocol_create_gallery.py' 2026-02-11T16:23:34,007 adding 'xmipp3/protocols/protocol_ctf_consensus.py' 2026-02-11T16:23:34,009 adding 'xmipp3/protocols/protocol_ctf_correct_phase.py' 2026-02-11T16:23:34,010 adding 'xmipp3/protocols/protocol_ctf_correct_wiener2d.py' 2026-02-11T16:23:34,012 adding 'xmipp3/protocols/protocol_ctf_defocus_group.py' 2026-02-11T16:23:34,015 adding 'xmipp3/protocols/protocol_ctf_micrographs.py' 2026-02-11T16:23:34,017 adding 'xmipp3/protocols/protocol_deep_hand.py' 2026-02-11T16:23:34,021 adding 'xmipp3/protocols/protocol_deep_micrograph_screen.py' 2026-02-11T16:23:34,022 adding 'xmipp3/protocols/protocol_denoise_particles.py' 2026-02-11T16:23:34,025 adding 'xmipp3/protocols/protocol_eliminate_empty_images.py' 2026-02-11T16:23:34,027 adding 'xmipp3/protocols/protocol_extract_asymmetric_unit.py' 2026-02-11T16:23:34,030 adding 'xmipp3/protocols/protocol_extract_particles.py' 2026-02-11T16:23:34,034 adding 'xmipp3/protocols/protocol_extract_particles_pairs.py' 2026-02-11T16:23:34,036 adding 'xmipp3/protocols/protocol_flexalign.py' 2026-02-11T16:23:34,038 adding 'xmipp3/protocols/protocol_generate_reprojections.py' 2026-02-11T16:23:34,040 adding 'xmipp3/protocols/protocol_helical_parameters.py' 2026-02-11T16:23:34,042 adding 'xmipp3/protocols/protocol_kerdensom.py' 2026-02-11T16:23:34,044 adding 'xmipp3/protocols/protocol_local_ctf.py' 2026-02-11T16:23:34,046 adding 'xmipp3/protocols/protocol_mics_defocus_balancer.py' 2026-02-11T16:23:34,049 adding 'xmipp3/protocols/protocol_ml2d.py' 2026-02-11T16:23:34,052 adding 'xmipp3/protocols/protocol_movie_alignment_consensus.py' 2026-02-11T16:23:34,055 adding 'xmipp3/protocols/protocol_movie_dose_analysis.py' 2026-02-11T16:23:34,059 adding 'xmipp3/protocols/protocol_movie_gain.py' 2026-02-11T16:23:34,062 adding 'xmipp3/protocols/protocol_movie_max_shift.py' 2026-02-11T16:23:34,063 adding 'xmipp3/protocols/protocol_movie_split_frames.py' 2026-02-11T16:23:34,065 adding 'xmipp3/protocols/protocol_multiple_fscs.py' 2026-02-11T16:23:34,068 adding 'xmipp3/protocols/protocol_multireference_alignability.py' 2026-02-11T16:23:34,070 adding 'xmipp3/protocols/protocol_normalize_strain.py' 2026-02-11T16:23:34,072 adding 'xmipp3/protocols/protocol_particle_pick.py' 2026-02-11T16:23:34,074 adding 'xmipp3/protocols/protocol_particle_pick_automatic.py' 2026-02-11T16:23:34,076 adding 'xmipp3/protocols/protocol_particle_pick_consensus.py' 2026-02-11T16:23:34,078 adding 'xmipp3/protocols/protocol_particle_pick_pairs.py' 2026-02-11T16:23:34,079 adding 'xmipp3/protocols/protocol_particle_pick_remove_duplicates.py' 2026-02-11T16:23:34,080 adding 'xmipp3/protocols/protocol_phantom_create.py' 2026-02-11T16:23:34,082 adding 'xmipp3/protocols/protocol_pick_noise.py' 2026-02-11T16:23:34,084 adding 'xmipp3/protocols/protocol_postProcessing_deepPostProcessing.py' 2026-02-11T16:23:34,087 adding 'xmipp3/protocols/protocol_preprocess_micrographs.py' 2026-02-11T16:23:34,090 adding 'xmipp3/protocols/protocol_random_conical_tilt.py' 2026-02-11T16:23:34,093 adding 'xmipp3/protocols/protocol_ransac.py' 2026-02-11T16:23:34,095 adding 'xmipp3/protocols/protocol_reconstruct_fourier.py' 2026-02-11T16:23:34,105 adding 'xmipp3/protocols/protocol_reconstruct_highres.py' 2026-02-11T16:23:34,109 adding 'xmipp3/protocols/protocol_reconstruct_significant.py' 2026-02-11T16:23:34,112 adding 'xmipp3/protocols/protocol_reconstruct_swarm.py' 2026-02-11T16:23:34,114 adding 'xmipp3/protocols/protocol_resolution3d.py' 2026-02-11T16:23:34,116 adding 'xmipp3/protocols/protocol_resolution_bfactor.py' 2026-02-11T16:23:34,118 adding 'xmipp3/protocols/protocol_resolution_deepres.py' 2026-02-11T16:23:34,120 adding 'xmipp3/protocols/protocol_resolution_directional.py' 2026-02-11T16:23:34,122 adding 'xmipp3/protocols/protocol_resolution_fso.py' 2026-02-11T16:23:34,124 adding 'xmipp3/protocols/protocol_resolution_monogenic_signal.py' 2026-02-11T16:23:34,126 adding 'xmipp3/protocols/protocol_rotate_volume.py' 2026-02-11T16:23:34,127 adding 'xmipp3/protocols/protocol_rotational_symmetry.py' 2026-02-11T16:23:34,137 adding 'xmipp3/protocols/protocol_screen_deepConsensus.py' 2026-02-11T16:23:34,140 adding 'xmipp3/protocols/protocol_screen_particles.py' 2026-02-11T16:23:34,142 adding 'xmipp3/protocols/protocol_shift_particles.py' 2026-02-11T16:23:34,143 adding 'xmipp3/protocols/protocol_shift_volume.py' 2026-02-11T16:23:34,145 adding 'xmipp3/protocols/protocol_simulate_ctf.py' 2026-02-11T16:23:34,147 adding 'xmipp3/protocols/protocol_structure_map.py' 2026-02-11T16:23:34,150 adding 'xmipp3/protocols/protocol_structure_map_zernike3d.py' 2026-02-11T16:23:34,152 adding 'xmipp3/protocols/protocol_subtract_projection.py' 2026-02-11T16:23:34,155 adding 'xmipp3/protocols/protocol_tilt_analysis.py' 2026-02-11T16:23:34,157 adding 'xmipp3/protocols/protocol_trigger_data.py' 2026-02-11T16:23:34,160 adding 'xmipp3/protocols/protocol_validate_fscq.py' 2026-02-11T16:23:34,163 adding 'xmipp3/protocols/protocol_validate_nontilt.py' 2026-02-11T16:23:34,166 adding 'xmipp3/protocols/protocol_validate_overfitting.py' 2026-02-11T16:23:34,168 adding 'xmipp3/protocols/protocol_volume_adjust_sub.py' 2026-02-11T16:23:34,170 adding 'xmipp3/protocols/protocol_volume_consensus.py' 2026-02-11T16:23:34,172 adding 'xmipp3/protocols/protocol_volume_deform_zernike3d.py' 2026-02-11T16:23:34,173 adding 'xmipp3/protocols/protocol_volume_local_adjust.py' 2026-02-11T16:23:34,176 adding 'xmipp3/protocols/protocol_volume_local_sharpening.py' 2026-02-11T16:23:34,178 adding 'xmipp3/protocols/protocol_volume_strain.py' 2026-02-11T16:23:34,179 adding 'xmipp3/protocols/protocol_write_testC.py' 2026-02-11T16:23:34,181 adding 'xmipp3/protocols/protocol_write_testP.py' 2026-02-11T16:23:34,183 adding 'xmipp3/protocols/protocol_preprocess/__init__.py' 2026-02-11T16:23:34,185 adding 'xmipp3/protocols/protocol_preprocess/geometrical_mask.py' 2026-02-11T16:23:34,187 adding 'xmipp3/protocols/protocol_preprocess/protocol_add_noise.py' 2026-02-11T16:23:34,189 adding 'xmipp3/protocols/protocol_preprocess/protocol_create_mask2d.py' 2026-02-11T16:23:34,191 adding 'xmipp3/protocols/protocol_preprocess/protocol_create_mask3d.py' 2026-02-11T16:23:34,195 adding 'xmipp3/protocols/protocol_preprocess/protocol_crop_resize.py' 2026-02-11T16:23:34,197 adding 'xmipp3/protocols/protocol_preprocess/protocol_filter.py' 2026-02-11T16:23:34,199 adding 'xmipp3/protocols/protocol_preprocess/protocol_image_operate.py' 2026-02-11T16:23:34,201 adding 'xmipp3/protocols/protocol_preprocess/protocol_mask.py' 2026-02-11T16:23:34,203 adding 'xmipp3/protocols/protocol_preprocess/protocol_movie_resize.py' 2026-02-11T16:23:34,207 adding 'xmipp3/protocols/protocol_preprocess/protocol_preprocess.py' 2026-02-11T16:23:34,209 adding 'xmipp3/protocols/protocol_preprocess/protocol_process.py' 2026-02-11T16:23:34,210 adding 'xmipp3/protocols/protocol_projmatch/__init__.py' 2026-02-11T16:23:34,214 adding 'xmipp3/protocols/protocol_projmatch/projmatch_form.py' 2026-02-11T16:23:34,216 adding 'xmipp3/protocols/protocol_projmatch/projmatch_initialize.py' 2026-02-11T16:23:34,220 adding 'xmipp3/protocols/protocol_projmatch/projmatch_steps.py' 2026-02-11T16:23:34,223 adding 'xmipp3/protocols/protocol_projmatch/protocol_projmatch.py' 2026-02-11T16:23:34,225 adding 'xmipp3/tests/__init__.py' 2026-02-11T16:23:34,229 adding 'xmipp3/tests/test_convert_xmipp.py' 2026-02-11T16:23:34,231 adding 'xmipp3/tests/test_protocol_angular_graph_consistency.py' 2026-02-11T16:23:34,232 adding 'xmipp3/tests/test_protocol_apply_transformation_matrix.py' 2026-02-11T16:23:34,234 adding 'xmipp3/tests/test_protocol_compare_angles.py' 2026-02-11T16:23:34,235 adding 'xmipp3/tests/test_protocol_consensus_classes3D.py' 2026-02-11T16:23:34,237 adding 'xmipp3/tests/test_protocol_ctf_consensus.py' 2026-02-11T16:23:34,240 adding 'xmipp3/tests/test_protocol_extract_asymmetric_unit.py' 2026-02-11T16:23:34,242 adding 'xmipp3/tests/test_protocol_likelihood.py' 2026-02-11T16:23:34,243 adding 'xmipp3/tests/test_protocol_monodir.py' 2026-02-11T16:23:34,245 adding 'xmipp3/tests/test_protocol_multiple_fsc.py' 2026-02-11T16:23:34,246 adding 'xmipp3/tests/test_protocol_multireference_alignability.py' 2026-02-11T16:23:34,247 adding 'xmipp3/tests/test_protocol_reconstruct_fourier.py' 2026-02-11T16:23:34,249 adding 'xmipp3/tests/test_protocol_screen_deepConsensus.py' 2026-02-11T16:23:34,251 adding 'xmipp3/tests/test_protocol_simulate_ctf.py' 2026-02-11T16:23:34,252 adding 'xmipp3/tests/test_protocol_split_frames.py' 2026-02-11T16:23:34,254 adding 'xmipp3/tests/test_protocol_validate_fscq.py' 2026-02-11T16:23:34,255 adding 'xmipp3/tests/test_protocol_validate_overfitting.py' 2026-02-11T16:23:34,256 adding 'xmipp3/tests/test_protocols_add_noise.py' 2026-02-11T16:23:34,258 adding 'xmipp3/tests/test_protocols_continuousflex.py' 2026-02-11T16:23:34,260 adding 'xmipp3/tests/test_protocols_deepVolPostprocessing.py' 2026-02-11T16:23:34,261 adding 'xmipp3/tests/test_protocols_deepcenter_predict.py' 2026-02-11T16:23:34,262 adding 'xmipp3/tests/test_protocols_deepres.py' 2026-02-11T16:23:34,264 adding 'xmipp3/tests/test_protocols_fso.py' 2026-02-11T16:23:34,265 adding 'xmipp3/tests/test_protocols_highres.py' 2026-02-11T16:23:34,267 adding 'xmipp3/tests/test_protocols_local_defocus.py' 2026-02-11T16:23:34,268 adding 'xmipp3/tests/test_protocols_localdeblur.py' 2026-02-11T16:23:34,270 adding 'xmipp3/tests/test_protocols_monores.py' 2026-02-11T16:23:34,271 adding 'xmipp3/tests/test_protocols_realignment_classes.py' 2026-02-11T16:23:34,278 adding 'xmipp3/tests/test_protocols_xmipp_2d.py' 2026-02-11T16:23:34,287 adding 'xmipp3/tests/test_protocols_xmipp_3d.py' 2026-02-11T16:23:34,292 adding 'xmipp3/tests/test_protocols_xmipp_mics.py' 2026-02-11T16:23:34,294 adding 'xmipp3/tests/test_protocols_xmipp_movie_resize.py' 2026-02-11T16:23:34,297 adding 'xmipp3/tests/test_protocols_xmipp_movies.py' 2026-02-11T16:23:34,299 adding 'xmipp3/tests/test_protocols_zernike3d.py' 2026-02-11T16:23:34,301 adding 'xmipp3/viewers/__init__.py' 2026-02-11T16:23:34,303 adding 'xmipp3/viewers/plotter.py' 2026-02-11T16:23:34,305 adding 'xmipp3/viewers/viewer.py' 2026-02-11T16:23:34,307 adding 'xmipp3/viewers/viewer_LL_matrix.py' 2026-02-11T16:23:34,308 adding 'xmipp3/viewers/viewer_analyze_local_ctf.py' 2026-02-11T16:23:34,310 adding 'xmipp3/viewers/viewer_apply_tilt_to_ctf.py' 2026-02-11T16:23:34,311 adding 'xmipp3/viewers/viewer_cl2d.py' 2026-02-11T16:23:34,313 adding 'xmipp3/viewers/viewer_cl2d_clustering.py' 2026-02-11T16:23:34,315 adding 'xmipp3/viewers/viewer_consensus_classes.py' 2026-02-11T16:23:34,316 adding 'xmipp3/viewers/viewer_ctf_consensus.py' 2026-02-11T16:23:34,318 adding 'xmipp3/viewers/viewer_deepEMHancer.py' 2026-02-11T16:23:34,319 adding 'xmipp3/viewers/viewer_deep_consensus.py' 2026-02-11T16:23:34,321 adding 'xmipp3/viewers/viewer_deep_micrograph_cleaner.py' 2026-02-11T16:23:34,323 adding 'xmipp3/viewers/viewer_dose_analysis.py' 2026-02-11T16:23:34,324 adding 'xmipp3/viewers/viewer_eliminate_empty_images.py' 2026-02-11T16:23:34,326 adding 'xmipp3/viewers/viewer_extract_asymmetric_unit.py' 2026-02-11T16:23:34,327 adding 'xmipp3/viewers/viewer_local_sharpening.py' 2026-02-11T16:23:34,329 adding 'xmipp3/viewers/viewer_ml2d.py' 2026-02-11T16:23:34,331 adding 'xmipp3/viewers/viewer_movie_alignment.py' 2026-02-11T16:23:34,332 adding 'xmipp3/viewers/viewer_normalize_strain.py' 2026-02-11T16:23:34,334 adding 'xmipp3/viewers/viewer_pdb_deform_zernike3d.py' 2026-02-11T16:23:34,338 adding 'xmipp3/viewers/viewer_projmatch.py' 2026-02-11T16:23:34,339 adding 'xmipp3/viewers/viewer_ransac.py' 2026-02-11T16:23:34,341 adding 'xmipp3/viewers/viewer_reconstruct_highres.py' 2026-02-11T16:23:34,344 adding 'xmipp3/viewers/viewer_resolution3d.py' 2026-02-11T16:23:34,345 adding 'xmipp3/viewers/viewer_resolution_bfactor.py' 2026-02-11T16:23:34,347 adding 'xmipp3/viewers/viewer_resolution_deepres.py' 2026-02-11T16:23:34,350 adding 'xmipp3/viewers/viewer_resolution_directional.py' 2026-02-11T16:23:34,352 adding 'xmipp3/viewers/viewer_resolution_fso.py' 2026-02-11T16:23:34,354 adding 'xmipp3/viewers/viewer_resolution_monogenic_signal.py' 2026-02-11T16:23:34,357 adding 'xmipp3/viewers/viewer_structure_map.py' 2026-02-11T16:23:34,359 adding 'xmipp3/viewers/viewer_subtract_projection.py' 2026-02-11T16:23:34,360 adding 'xmipp3/viewers/viewer_swarm.py' 2026-02-11T16:23:34,362 adding 'xmipp3/viewers/viewer_validate_fscq.py' 2026-02-11T16:23:34,364 adding 'xmipp3/viewers/viewer_validate_nontilt.py' 2026-02-11T16:23:34,365 adding 'xmipp3/viewers/viewer_validate_overfitting.py' 2026-02-11T16:23:34,367 adding 'xmipp3/viewers/viewer_volume_consensus.py' 2026-02-11T16:23:34,368 adding 'xmipp3/viewers/viewer_volume_deform_zernike3d.py' 2026-02-11T16:23:34,369 adding 'xmipp3/viewers/viewer_volume_strain.py' 2026-02-11T16:23:34,371 adding 'xmipp3/viewers/viewer_volume_subtraction.py' 2026-02-11T16:23:34,372 adding 'scipion_em_xmipp-26.2.0.dist-info/METADATA' 2026-02-11T16:23:34,373 adding 'scipion_em_xmipp-26.2.0.dist-info/WHEEL' 2026-02-11T16:23:34,374 adding 'scipion_em_xmipp-26.2.0.dist-info/entry_points.txt' 2026-02-11T16:23:34,375 adding 'scipion_em_xmipp-26.2.0.dist-info/top_level.txt' 2026-02-11T16:23:34,379 adding 'scipion_em_xmipp-26.2.0.dist-info/RECORD' 2026-02-11T16:23:34,401 removing build/bdist.linux-armv7l/wheel 2026-02-11T16:23:34,555 Building wheel for scipion-em-xmipp (pyproject.toml): finished with status 'done' 2026-02-11T16:23:34,594 Created wheel for scipion-em-xmipp: filename=scipion_em_xmipp-26.2.0-py3-none-any.whl size=1808920 sha256=b5119e12ad5bcd56a8cac235106ef960a7badc62bbd5f5b06e75b216591450e3 2026-02-11T16:23:34,596 Stored in directory: /tmp/pip-ephem-wheel-cache-ro_rbqkj/wheels/2f/aa/bc/ff558dbc5ae2e62edf13b5cd1349892166deac093f9a96a814 2026-02-11T16:23:34,615 Successfully built scipion-em-xmipp 2026-02-11T16:23:34,661 Removed build tracker: '/tmp/pip-build-tracker-4qypvtty'