2026-02-11T17:02:10,483 Created temporary directory: /tmp/pip-ephem-wheel-cache-v2hbcpen 2026-02-11T17:02:10,485 Created temporary directory: /tmp/pip-build-tracker-_0nklxzb 2026-02-11T17:02:10,486 Initialized build tracking at /tmp/pip-build-tracker-_0nklxzb 2026-02-11T17:02:10,486 Created build tracker: /tmp/pip-build-tracker-_0nklxzb 2026-02-11T17:02:10,487 Entered build tracker: /tmp/pip-build-tracker-_0nklxzb 2026-02-11T17:02:10,487 Created temporary directory: /tmp/pip-wheel-wi6i7j4k 2026-02-11T17:02:10,491 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-02-11T17:02:10,493 Created temporary directory: /tmp/pip-ephem-wheel-cache-__l6b0h_ 2026-02-11T17:02:10,516 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-02-11T17:02:10,520 2 location(s) to search for versions of galaxy-app: 2026-02-11T17:02:10,520 * https://pypi.org/simple/galaxy-app/ 2026-02-11T17:02:10,520 * https://www.piwheels.org/simple/galaxy-app/ 2026-02-11T17:02:10,520 Fetching project page and analyzing links: https://pypi.org/simple/galaxy-app/ 2026-02-11T17:02:10,521 Getting page https://pypi.org/simple/galaxy-app/ 2026-02-11T17:02:10,522 Found index url https://pypi.org/simple 2026-02-11T17:02:10,739 Fetched page https://pypi.org/simple/galaxy-app/ as application/vnd.pypi.simple.v1+json 2026-02-11T17:02:10,752 Found link https://files.pythonhosted.org/packages/cd/3d/994b7f4faaee2a95a31af125e96734f3daa9f39e6decd0f7a09950ef686c/galaxy-app-20.5.0.tar.gz (from 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https://files.pythonhosted.org/packages/9a/54/07919f089225f319e85643152c58d577fc01d0e568cb9110cf434ca5b4ee/galaxy_app-25.0.2-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9) 2026-02-11T17:02:10,802 Found link https://files.pythonhosted.org/packages/53/9c/8d5cdb3013e508ef0c76b277ba5e1695e4d430bd04156f97977cb7895488/galaxy_app-25.0.2.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9), version: 25.0.2 2026-02-11T17:02:10,803 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/ff/e5/d8a099afeecad5902fcb02320137c1abc050befa10d53e45861d7f984aaf/galaxy_app-25.0.3-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9) 2026-02-11T17:02:10,804 Found link https://files.pythonhosted.org/packages/73/3e/df92e253e067efb5d36c0b31c0adc0cff9d417cebe10e87c17df702f92a9/galaxy_app-25.0.3.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9), version: 25.0.3 2026-02-11T17:02:10,804 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/79/de/90757d51467b4fb3834f2fb2ebf9781d28060fe19aec53465216c01f606b/galaxy_app-25.0.4-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9) 2026-02-11T17:02:10,805 Found link https://files.pythonhosted.org/packages/66/ad/5c2f9df1f257e9630a000bb154271e4d681f2b90bec2bd242782e127fcdf/galaxy_app-25.0.4.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9), version: 25.0.4 2026-02-11T17:02:10,806 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/cb/4d/fa2a56f4958bf22a88998a1ab0d85c0d78082956b921eb6f0559f943d373/galaxy_app-25.1.dev0-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9) 2026-02-11T17:02:10,807 Found link https://files.pythonhosted.org/packages/84/c1/ad38ac89ae8245180b76113b4c3086dd4da22d4094e752fb5a1f9fba8425/galaxy_app-25.1.dev0.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9), version: 25.1.dev0 2026-02-11T17:02:10,808 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/d3/48/39f108b5edd2537999e65765e3c7c79e8d2a0ffccc33033e04ccf5c0f61d/galaxy_app-25.1.0-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9) 2026-02-11T17:02:10,809 Found link https://files.pythonhosted.org/packages/da/d5/995e5c17d2321d004186b2d3ca2f3f72f22effa774117ea51150ed7eb78e/galaxy_app-25.1.0.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9), version: 25.1.0 2026-02-11T17:02:10,810 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/51/7f/a5520e446153a7ffe588d08a9808da189ffce5a6a1bc7c46e62fc2880754/galaxy_app-25.1.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9) 2026-02-11T17:02:10,810 Found link https://files.pythonhosted.org/packages/45/a7/76ba5e233d7828531073073b9a2491137b4420e536537ba5b410aef1ab44/galaxy_app-25.1.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9), version: 25.1.1 2026-02-11T17:02:10,811 Fetching project page and analyzing links: https://www.piwheels.org/simple/galaxy-app/ 2026-02-11T17:02:10,812 Getting page https://www.piwheels.org/simple/galaxy-app/ 2026-02-11T17:02:10,813 Found index url https://www.piwheels.org/simple 2026-02-11T17:02:10,971 Fetched page https://www.piwheels.org/simple/galaxy-app/ as text/html 2026-02-11T17:02:10,981 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-25.1.0-py3-none-any.whl#sha256=c29efe70b9321aabf3211b8d2989ffcd791cf8f68f30e2b1bec4deac58d3afca (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.9) 2026-02-11T17:02:10,982 Skipping link: No binaries permitted for galaxy-app: 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https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-24.2.4-py3-none-any.whl#sha256=b96734c33f37549375a1182d6741d5e83f6a48278f7bed5f8e0787ebcbf34cdd (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.8) 2026-02-11T17:02:10,985 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-24.2.3-py3-none-any.whl#sha256=373716c96daa1d0dc823f50d551219ca741bf4aecfa380db3ef347187be5a00a (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.8) 2026-02-11T17:02:10,986 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-24.2.2-py3-none-any.whl#sha256=36ba4ccf54fdb4c04dc46adb0f70984791249b66910bcbf8b2a0ca41df63d39c (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.8) 2026-02-11T17:02:10,987 Skipping link: No binaries permitted for galaxy-app: 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2026-02-11T17:02:11,022 Given no hashes to check 1 links for project 'galaxy-app': discarding no candidates 2026-02-11T17:02:11,040 Collecting galaxy-app==25.1.1 2026-02-11T17:02:11,042 Created temporary directory: /tmp/pip-unpack-yi1wfu5q 2026-02-11T17:02:11,261 Downloading galaxy_app-25.1.1.tar.gz (1.3 MB) 2026-02-11T17:02:12,812 Added galaxy-app==25.1.1 from https://files.pythonhosted.org/packages/45/a7/76ba5e233d7828531073073b9a2491137b4420e536537ba5b410aef1ab44/galaxy_app-25.1.1.tar.gz to build tracker '/tmp/pip-build-tracker-_0nklxzb' 2026-02-11T17:02:12,815 Created temporary directory: /tmp/pip-build-env-a0bnc9bn 2026-02-11T17:02:12,820 Installing build dependencies: started 2026-02-11T17:02:12,821 Running command pip subprocess to install build dependencies 2026-02-11T17:02:13,946 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-02-11T17:02:14,506 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-02-11T17:02:14,529 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-02-11T17:02:16,253 Collecting setuptools 2026-02-11T17:02:16,273 Using cached setuptools-82.0.0-py3-none-any.whl (1.0 MB) 2026-02-11T17:02:19,317 Installing collected packages: setuptools 2026-02-11T17:02:22,332 Successfully installed setuptools-82.0.0 2026-02-11T17:02:22,597 Installing build dependencies: finished with status 'done' 2026-02-11T17:02:22,604 Getting requirements to build wheel: started 2026-02-11T17:02:22,605 Running command Getting requirements to build wheel 2026-02-11T17:02:23,203 /tmp/pip-build-env-a0bnc9bn/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-02-11T17:02:23,204 !! 2026-02-11T17:02:23,205 ******************************************************************************** 2026-02-11T17:02:23,205 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-02-11T17:02:23,206 License :: OSI Approved :: Academic Free License (AFL) 2026-02-11T17:02:23,208 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-11T17:02:23,208 ******************************************************************************** 2026-02-11T17:02:23,210 !! 2026-02-11T17:02:23,210 self._finalize_license_expression() 2026-02-11T17:02:23,282 running egg_info 2026-02-11T17:02:23,288 writing galaxy_app.egg-info/PKG-INFO 2026-02-11T17:02:23,301 writing dependency_links to galaxy_app.egg-info/dependency_links.txt 2026-02-11T17:02:23,308 writing entry points to galaxy_app.egg-info/entry_points.txt 2026-02-11T17:02:23,310 writing requirements to galaxy_app.egg-info/requires.txt 2026-02-11T17:02:23,311 writing top-level names to galaxy_app.egg-info/top_level.txt 2026-02-11T17:02:23,401 reading manifest file 'galaxy_app.egg-info/SOURCES.txt' 2026-02-11T17:02:23,467 reading manifest template 'MANIFEST.in' 2026-02-11T17:02:23,976 adding license file 'LICENSE' 2026-02-11T17:02:24,006 writing manifest file 'galaxy_app.egg-info/SOURCES.txt' 2026-02-11T17:02:24,096 Getting requirements to build wheel: finished with status 'done' 2026-02-11T17:02:24,100 Created temporary directory: /tmp/pip-modern-metadata-d3grc4t1 2026-02-11T17:02:24,102 Preparing metadata (pyproject.toml): started 2026-02-11T17:02:24,103 Running command Preparing metadata (pyproject.toml) 2026-02-11T17:02:24,667 /tmp/pip-build-env-a0bnc9bn/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-02-11T17:02:24,667 !! 2026-02-11T17:02:24,668 ******************************************************************************** 2026-02-11T17:02:24,669 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-02-11T17:02:24,670 License :: OSI Approved :: Academic Free License (AFL) 2026-02-11T17:02:24,671 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-11T17:02:24,672 ******************************************************************************** 2026-02-11T17:02:24,673 !! 2026-02-11T17:02:24,673 self._finalize_license_expression() 2026-02-11T17:02:24,691 running dist_info 2026-02-11T17:02:24,702 creating /tmp/pip-modern-metadata-d3grc4t1/galaxy_app.egg-info 2026-02-11T17:02:24,703 writing /tmp/pip-modern-metadata-d3grc4t1/galaxy_app.egg-info/PKG-INFO 2026-02-11T17:02:24,714 writing dependency_links to /tmp/pip-modern-metadata-d3grc4t1/galaxy_app.egg-info/dependency_links.txt 2026-02-11T17:02:24,716 writing entry points to /tmp/pip-modern-metadata-d3grc4t1/galaxy_app.egg-info/entry_points.txt 2026-02-11T17:02:24,718 writing requirements to /tmp/pip-modern-metadata-d3grc4t1/galaxy_app.egg-info/requires.txt 2026-02-11T17:02:24,719 writing top-level names to /tmp/pip-modern-metadata-d3grc4t1/galaxy_app.egg-info/top_level.txt 2026-02-11T17:02:24,721 writing manifest file '/tmp/pip-modern-metadata-d3grc4t1/galaxy_app.egg-info/SOURCES.txt' 2026-02-11T17:02:24,806 reading manifest file '/tmp/pip-modern-metadata-d3grc4t1/galaxy_app.egg-info/SOURCES.txt' 2026-02-11T17:02:24,808 reading manifest template 'MANIFEST.in' 2026-02-11T17:02:25,331 adding license file 'LICENSE' 2026-02-11T17:02:25,353 writing manifest file '/tmp/pip-modern-metadata-d3grc4t1/galaxy_app.egg-info/SOURCES.txt' 2026-02-11T17:02:25,355 creating '/tmp/pip-modern-metadata-d3grc4t1/galaxy_app-25.1.1.dist-info' 2026-02-11T17:02:25,489 Preparing metadata (pyproject.toml): finished with status 'done' 2026-02-11T17:02:25,505 Source in /tmp/pip-wheel-wi6i7j4k/galaxy-app_2bd95a043ba2436aa078103e90ccce20 has version 25.1.1, which satisfies requirement galaxy-app==25.1.1 from https://files.pythonhosted.org/packages/45/a7/76ba5e233d7828531073073b9a2491137b4420e536537ba5b410aef1ab44/galaxy_app-25.1.1.tar.gz 2026-02-11T17:02:25,506 Removed galaxy-app==25.1.1 from https://files.pythonhosted.org/packages/45/a7/76ba5e233d7828531073073b9a2491137b4420e536537ba5b410aef1ab44/galaxy_app-25.1.1.tar.gz from build tracker '/tmp/pip-build-tracker-_0nklxzb' 2026-02-11T17:02:25,533 Created temporary directory: /tmp/pip-unpack-cv9rnspf 2026-02-11T17:02:25,534 Building wheels for collected packages: galaxy-app 2026-02-11T17:02:25,539 Created temporary directory: /tmp/pip-wheel-oy7vjxhh 2026-02-11T17:02:25,540 Destination directory: /tmp/pip-wheel-oy7vjxhh 2026-02-11T17:02:25,542 Building wheel for galaxy-app (pyproject.toml): started 2026-02-11T17:02:25,543 Running command Building wheel for galaxy-app (pyproject.toml) 2026-02-11T17:02:26,109 /tmp/pip-build-env-a0bnc9bn/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-02-11T17:02:26,109 !! 2026-02-11T17:02:26,110 ******************************************************************************** 2026-02-11T17:02:26,111 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-02-11T17:02:26,112 License :: OSI Approved :: Academic Free License (AFL) 2026-02-11T17:02:26,113 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-11T17:02:26,114 ******************************************************************************** 2026-02-11T17:02:26,115 !! 2026-02-11T17:02:26,116 self._finalize_license_expression() 2026-02-11T17:02:26,134 running bdist_wheel 2026-02-11T17:02:26,162 running build 2026-02-11T17:02:26,162 running build_py 2026-02-11T17:02:26,171 creating build/lib/tool_shed_client 2026-02-11T17:02:26,173 copying tool_shed_client/trs_util.py -> build/lib/tool_shed_client 2026-02-11T17:02:26,176 copying tool_shed_client/__init__.py -> build/lib/tool_shed_client 2026-02-11T17:02:26,178 creating build/lib/galaxy 2026-02-11T17:02:26,179 copying galaxy/queue_worker.py -> build/lib/galaxy 2026-02-11T17:02:26,182 copying galaxy/main_config.py -> build/lib/galaxy 2026-02-11T17:02:26,184 copying galaxy/app.py -> build/lib/galaxy 2026-02-11T17:02:26,187 copying galaxy/di.py -> build/lib/galaxy 2026-02-11T17:02:26,189 copying galaxy/structured_app.py -> build/lib/galaxy 2026-02-11T17:02:26,192 copying galaxy/config_watchers.py -> build/lib/galaxy 2026-02-11T17:02:26,194 copying galaxy/queues.py -> build/lib/galaxy 2026-02-11T17:02:26,196 copying galaxy/__init__.py -> build/lib/galaxy 2026-02-11T17:02:26,197 copying galaxy/main.py -> build/lib/galaxy 2026-02-11T17:02:26,200 creating build/lib/galaxy_ext 2026-02-11T17:02:26,201 copying galaxy_ext/__init__.py -> build/lib/galaxy_ext 2026-02-11T17:02:26,203 creating build/lib/tool_shed_client/schema 2026-02-11T17:02:26,204 copying tool_shed_client/schema/trs.py -> build/lib/tool_shed_client/schema 2026-02-11T17:02:26,207 copying tool_shed_client/schema/trs_service_info.py -> build/lib/tool_shed_client/schema 2026-02-11T17:02:26,209 copying tool_shed_client/schema/__init__.py -> build/lib/tool_shed_client/schema 2026-02-11T17:02:26,212 creating build/lib/galaxy/app_unittest_utils 2026-02-11T17:02:26,213 copying galaxy/app_unittest_utils/tools_support.py -> build/lib/galaxy/app_unittest_utils 2026-02-11T17:02:26,215 copying galaxy/app_unittest_utils/galaxy_mock.py -> build/lib/galaxy/app_unittest_utils 2026-02-11T17:02:26,218 copying galaxy/app_unittest_utils/__init__.py -> build/lib/galaxy/app_unittest_utils 2026-02-11T17:02:26,219 copying galaxy/app_unittest_utils/toolbox_support.py -> build/lib/galaxy/app_unittest_utils 2026-02-11T17:02:26,224 creating build/lib/galaxy/managers 2026-02-11T17:02:26,225 copying galaxy/managers/citations.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,228 copying galaxy/managers/remote_files.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,230 copying galaxy/managers/group_users.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,232 copying galaxy/managers/session.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,234 copying galaxy/managers/ratable.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,236 copying galaxy/managers/genomes.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,239 copying galaxy/managers/file_source_instances.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,242 copying galaxy/managers/datatypes.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,244 copying galaxy/managers/job_connections.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,246 copying galaxy/managers/roles.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,249 copying galaxy/managers/tasks.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,251 copying galaxy/managers/display_applications.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,253 copying galaxy/managers/library_datasets.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,255 copying galaxy/managers/histories.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,258 copying galaxy/managers/users.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,261 copying galaxy/managers/tools.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,263 copying galaxy/managers/visualizations.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,266 copying galaxy/managers/pages.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,269 copying galaxy/managers/sharable.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,271 copying galaxy/managers/dbkeys.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,274 copying galaxy/managers/landing.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,276 copying galaxy/managers/folders.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,279 copying galaxy/managers/metrics.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,281 copying galaxy/managers/hdcas.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,284 copying galaxy/managers/credentials.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,286 copying galaxy/managers/api_keys.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,288 copying galaxy/managers/interactivetool.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,291 copying galaxy/managers/model_stores.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,293 copying galaxy/managers/workflows.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,297 copying galaxy/managers/collections.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,300 copying galaxy/managers/base.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,303 copying galaxy/managers/markdown_util.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,306 copying galaxy/managers/libraries.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,308 copying galaxy/managers/lddas.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,310 copying galaxy/managers/notification.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,313 copying galaxy/managers/markdown_parse.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,315 copying galaxy/managers/forms.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,317 copying galaxy/managers/_config_templates.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,320 copying galaxy/managers/annotatable.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,322 copying galaxy/managers/executables.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,324 copying galaxy/managers/chat.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,326 copying galaxy/managers/context.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,329 copying galaxy/managers/tool_data.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,331 copying galaxy/managers/__init__.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,333 copying galaxy/managers/licenses.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,335 copying galaxy/managers/jobs.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,339 copying galaxy/managers/group_roles.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,341 copying galaxy/managers/configuration.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,343 copying galaxy/managers/secured.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,346 copying galaxy/managers/history_contents.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,348 copying galaxy/managers/quotas.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,351 copying galaxy/managers/item_tags.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,353 copying galaxy/managers/deletable.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,355 copying galaxy/managers/tours.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,358 copying galaxy/managers/taggable.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,360 copying galaxy/managers/groups.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,362 copying galaxy/managers/export_tracker.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,364 copying galaxy/managers/tags.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,366 copying galaxy/managers/datasets.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,369 copying galaxy/managers/object_store_instances.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,372 copying galaxy/managers/collections_util.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,375 copying galaxy/managers/rbac_secured.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,378 copying galaxy/managers/hdas.py -> build/lib/galaxy/managers 2026-02-11T17:02:26,381 creating build/lib/galaxy/celery 2026-02-11T17:02:26,382 copying galaxy/celery/_serialization.py -> build/lib/galaxy/celery 2026-02-11T17:02:26,384 copying galaxy/celery/tasks.py -> build/lib/galaxy/celery 2026-02-11T17:02:26,387 copying galaxy/celery/base_task.py -> build/lib/galaxy/celery 2026-02-11T17:02:26,390 copying galaxy/celery/__init__.py -> build/lib/galaxy/celery 2026-02-11T17:02:26,393 creating build/lib/galaxy/carbon_emissions 2026-02-11T17:02:26,395 copying galaxy/carbon_emissions/__init__.py -> build/lib/galaxy/carbon_emissions 2026-02-11T17:02:26,397 creating build/lib/galaxy/dependencies 2026-02-11T17:02:26,399 copying galaxy/dependencies/script.py -> build/lib/galaxy/dependencies 2026-02-11T17:02:26,401 copying galaxy/dependencies/__init__.py -> build/lib/galaxy/dependencies 2026-02-11T17:02:26,405 creating build/lib/galaxy/workflow 2026-02-11T17:02:26,406 copying galaxy/workflow/workflow_parameter_input_definitions.py -> build/lib/galaxy/workflow 2026-02-11T17:02:26,408 copying galaxy/workflow/scheduling_manager.py -> build/lib/galaxy/workflow 2026-02-11T17:02:26,411 copying galaxy/workflow/extract.py -> build/lib/galaxy/workflow 2026-02-11T17:02:26,414 copying galaxy/workflow/trs_proxy.py -> build/lib/galaxy/workflow 2026-02-11T17:02:26,417 copying galaxy/workflow/run.py -> build/lib/galaxy/workflow 2026-02-11T17:02:26,420 copying galaxy/workflow/modules.py -> build/lib/galaxy/workflow 2026-02-11T17:02:26,425 copying galaxy/workflow/__init__.py -> build/lib/galaxy/workflow 2026-02-11T17:02:26,427 copying galaxy/workflow/render.py -> build/lib/galaxy/workflow 2026-02-11T17:02:26,430 copying galaxy/workflow/run_request.py -> build/lib/galaxy/workflow 2026-02-11T17:02:26,433 copying galaxy/workflow/steps.py -> build/lib/galaxy/workflow 2026-02-11T17:02:26,436 copying galaxy/workflow/errors.py -> build/lib/galaxy/workflow 2026-02-11T17:02:26,439 creating build/lib/galaxy/forms 2026-02-11T17:02:26,440 copying galaxy/forms/forms.py -> build/lib/galaxy/forms 2026-02-11T17:02:26,443 copying galaxy/forms/__init__.py -> build/lib/galaxy/forms 2026-02-11T17:02:26,445 creating build/lib/galaxy/tool_shed 2026-02-11T17:02:26,447 copying galaxy/tool_shed/repository_type.py -> build/lib/galaxy/tool_shed 2026-02-11T17:02:26,449 copying galaxy/tool_shed/cache.py -> build/lib/galaxy/tool_shed 2026-02-11T17:02:26,451 copying galaxy/tool_shed/__init__.py -> build/lib/galaxy/tool_shed 2026-02-11T17:02:26,453 creating build/lib/galaxy/webhooks 2026-02-11T17:02:26,454 copying galaxy/webhooks/__init__.py -> build/lib/galaxy/webhooks 2026-02-11T17:02:26,457 creating build/lib/galaxy/actions 2026-02-11T17:02:26,458 copying galaxy/actions/library.py -> build/lib/galaxy/actions 2026-02-11T17:02:26,461 copying galaxy/actions/__init__.py -> build/lib/galaxy/actions 2026-02-11T17:02:26,463 creating build/lib/galaxy/work 2026-02-11T17:02:26,464 copying galaxy/work/context.py -> build/lib/galaxy/work 2026-02-11T17:02:26,466 copying galaxy/work/__init__.py -> build/lib/galaxy/work 2026-02-11T17:02:26,468 creating build/lib/galaxy/short_term_storage 2026-02-11T17:02:26,470 copying galaxy/short_term_storage/__init__.py -> build/lib/galaxy/short_term_storage 2026-02-11T17:02:26,473 creating build/lib/galaxy/authnz 2026-02-11T17:02:26,474 copying galaxy/authnz/tapis.py -> build/lib/galaxy/authnz 2026-02-11T17:02:26,476 copying galaxy/authnz/custos_authnz.py -> build/lib/galaxy/authnz 2026-02-11T17:02:26,479 copying galaxy/authnz/psa_authnz.py -> build/lib/galaxy/authnz 2026-02-11T17:02:26,482 copying galaxy/authnz/util.py -> build/lib/galaxy/authnz 2026-02-11T17:02:26,484 copying galaxy/authnz/__init__.py -> build/lib/galaxy/authnz 2026-02-11T17:02:26,486 copying galaxy/authnz/managers.py -> build/lib/galaxy/authnz 2026-02-11T17:02:26,490 creating build/lib/galaxy/jobs 2026-02-11T17:02:26,490 copying galaxy/jobs/manager.py -> build/lib/galaxy/jobs 2026-02-11T17:02:26,493 copying galaxy/jobs/rule_helper.py -> build/lib/galaxy/jobs 2026-02-11T17:02:26,495 copying galaxy/jobs/stock_rules.py -> build/lib/galaxy/jobs 2026-02-11T17:02:26,497 copying galaxy/jobs/mapper.py -> build/lib/galaxy/jobs 2026-02-11T17:02:26,500 copying galaxy/jobs/dynamic_tool_destination.py -> build/lib/galaxy/jobs 2026-02-11T17:02:26,503 copying galaxy/jobs/handler.py -> build/lib/galaxy/jobs 2026-02-11T17:02:26,506 copying galaxy/jobs/__init__.py -> build/lib/galaxy/jobs 2026-02-11T17:02:26,511 copying galaxy/jobs/command_factory.py -> build/lib/galaxy/jobs 2026-02-11T17:02:26,515 creating build/lib/galaxy/tools 2026-02-11T17:02:26,516 copying galaxy/tools/biotools.py -> build/lib/galaxy/tools 2026-02-11T17:02:26,518 copying galaxy/tools/recommendations.py -> build/lib/galaxy/tools 2026-02-11T17:02:26,521 copying galaxy/tools/stock.py -> build/lib/galaxy/tools 2026-02-11T17:02:26,522 copying galaxy/tools/remote_tool_eval.py -> build/lib/galaxy/tools 2026-02-11T17:02:26,524 copying galaxy/tools/cache.py -> build/lib/galaxy/tools 2026-02-11T17:02:26,527 copying galaxy/tools/data_fetch.py -> build/lib/galaxy/tools 2026-02-11T17:02:26,530 copying galaxy/tools/_types.py -> build/lib/galaxy/tools 2026-02-11T17:02:26,532 copying galaxy/tools/__init__.py -> build/lib/galaxy/tools 2026-02-11T17:02:26,541 copying galaxy/tools/exception_handling.py -> build/lib/galaxy/tools 2026-02-11T17:02:26,543 copying galaxy/tools/execution_helpers.py -> build/lib/galaxy/tools 2026-02-11T17:02:26,545 copying galaxy/tools/special_tools.py -> build/lib/galaxy/tools 2026-02-11T17:02:26,546 copying galaxy/tools/wrappers.py -> build/lib/galaxy/tools 2026-02-11T17:02:26,550 copying galaxy/tools/evaluation.py -> build/lib/galaxy/tools 2026-02-11T17:02:26,553 copying galaxy/tools/errors.py -> build/lib/galaxy/tools 2026-02-11T17:02:26,556 copying galaxy/tools/execute.py -> build/lib/galaxy/tools 2026-02-11T17:02:26,559 copying galaxy/tools/repositories.py -> build/lib/galaxy/tools 2026-02-11T17:02:26,561 creating build/lib/galaxy/visualization 2026-02-11T17:02:26,562 copying galaxy/visualization/genomes.py -> build/lib/galaxy/visualization 2026-02-11T17:02:26,565 copying galaxy/visualization/__init__.py -> build/lib/galaxy/visualization 2026-02-11T17:02:26,567 creating build/lib/galaxy/workflow/schedulers 2026-02-11T17:02:26,568 copying galaxy/workflow/schedulers/core.py -> build/lib/galaxy/workflow/schedulers 2026-02-11T17:02:26,570 copying galaxy/workflow/schedulers/__init__.py -> build/lib/galaxy/workflow/schedulers 2026-02-11T17:02:26,573 creating build/lib/galaxy/workflow/resources 2026-02-11T17:02:26,574 copying galaxy/workflow/resources/__init__.py -> build/lib/galaxy/workflow/resources 2026-02-11T17:02:26,577 creating build/lib/galaxy/workflow/reports 2026-02-11T17:02:26,578 copying galaxy/workflow/reports/__init__.py -> build/lib/galaxy/workflow/reports 2026-02-11T17:02:26,580 creating build/lib/galaxy/workflow/refactor 2026-02-11T17:02:26,581 copying galaxy/workflow/refactor/schema.py -> build/lib/galaxy/workflow/refactor 2026-02-11T17:02:26,584 copying galaxy/workflow/refactor/__init__.py -> build/lib/galaxy/workflow/refactor 2026-02-11T17:02:26,586 copying galaxy/workflow/refactor/execute.py -> build/lib/galaxy/workflow/refactor 2026-02-11T17:02:26,589 creating build/lib/galaxy/workflow/reports/generators 2026-02-11T17:02:26,590 copying galaxy/workflow/reports/generators/__init__.py -> build/lib/galaxy/workflow/reports/generators 2026-02-11T17:02:26,592 copying galaxy/workflow/reports/generators/markdown.py -> build/lib/galaxy/workflow/reports/generators 2026-02-11T17:02:26,595 creating build/lib/galaxy/tool_shed/metadata 2026-02-11T17:02:26,596 copying galaxy/tool_shed/metadata/metadata_generator.py -> build/lib/galaxy/tool_shed/metadata 2026-02-11T17:02:26,600 copying galaxy/tool_shed/metadata/__init__.py -> build/lib/galaxy/tool_shed/metadata 2026-02-11T17:02:26,602 creating build/lib/galaxy/tool_shed/util 2026-02-11T17:02:26,603 copying galaxy/tool_shed/util/tool_dependency_util.py -> build/lib/galaxy/tool_shed/util 2026-02-11T17:02:26,606 copying galaxy/tool_shed/util/hg_util.py -> build/lib/galaxy/tool_shed/util 2026-02-11T17:02:26,608 copying galaxy/tool_shed/util/basic_util.py -> build/lib/galaxy/tool_shed/util 2026-02-11T17:02:26,610 copying galaxy/tool_shed/util/tool_util.py -> build/lib/galaxy/tool_shed/util 2026-02-11T17:02:26,613 copying galaxy/tool_shed/util/utility_container_manager.py -> build/lib/galaxy/tool_shed/util 2026-02-11T17:02:26,616 copying galaxy/tool_shed/util/metadata_util.py -> build/lib/galaxy/tool_shed/util 2026-02-11T17:02:26,617 copying galaxy/tool_shed/util/dependency_display.py -> build/lib/galaxy/tool_shed/util 2026-02-11T17:02:26,620 copying galaxy/tool_shed/util/container_util.py -> build/lib/galaxy/tool_shed/util 2026-02-11T17:02:26,622 copying galaxy/tool_shed/util/__init__.py -> build/lib/galaxy/tool_shed/util 2026-02-11T17:02:26,623 copying galaxy/tool_shed/util/shed_util_common.py -> build/lib/galaxy/tool_shed/util 2026-02-11T17:02:26,626 copying galaxy/tool_shed/util/repository_util.py -> build/lib/galaxy/tool_shed/util 2026-02-11T17:02:26,629 creating build/lib/galaxy/tool_shed/galaxy_install 2026-02-11T17:02:26,630 copying galaxy/tool_shed/galaxy_install/installed_repository_manager.py -> build/lib/galaxy/tool_shed/galaxy_install 2026-02-11T17:02:26,633 copying galaxy/tool_shed/galaxy_install/client.py -> build/lib/galaxy/tool_shed/galaxy_install 2026-02-11T17:02:26,635 copying galaxy/tool_shed/galaxy_install/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install 2026-02-11T17:02:26,637 copying galaxy/tool_shed/galaxy_install/install_manager.py -> build/lib/galaxy/tool_shed/galaxy_install 2026-02-11T17:02:26,640 copying galaxy/tool_shed/galaxy_install/update_repository_manager.py -> build/lib/galaxy/tool_shed/galaxy_install 2026-02-11T17:02:26,643 creating build/lib/galaxy/tool_shed/unittest_utils 2026-02-11T17:02:26,643 copying galaxy/tool_shed/unittest_utils/__init__.py -> build/lib/galaxy/tool_shed/unittest_utils 2026-02-11T17:02:26,646 creating build/lib/galaxy/tool_shed/tools 2026-02-11T17:02:26,647 copying galaxy/tool_shed/tools/tool_validator.py -> build/lib/galaxy/tool_shed/tools 2026-02-11T17:02:26,649 copying galaxy/tool_shed/tools/__init__.py -> build/lib/galaxy/tool_shed/tools 2026-02-11T17:02:26,651 copying galaxy/tool_shed/tools/data_table_manager.py -> build/lib/galaxy/tool_shed/tools 2026-02-11T17:02:26,654 creating build/lib/galaxy/tool_shed/galaxy_install/metadata 2026-02-11T17:02:26,655 copying galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/metadata 2026-02-11T17:02:26,657 copying galaxy/tool_shed/galaxy_install/metadata/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/metadata 2026-02-11T17:02:26,660 creating build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies 2026-02-11T17:02:26,661 copying galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies 2026-02-11T17:02:26,662 copying galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies 2026-02-11T17:02:26,666 creating build/lib/galaxy/tool_shed/galaxy_install/tools 2026-02-11T17:02:26,668 copying galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/tools 2026-02-11T17:02:26,672 copying galaxy/tool_shed/galaxy_install/tools/data_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/tools 2026-02-11T17:02:26,675 copying galaxy/tool_shed/galaxy_install/tools/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/tools 2026-02-11T17:02:26,678 creating build/lib/galaxy/jobs/runners 2026-02-11T17:02:26,679 copying galaxy/jobs/runners/tasks.py -> build/lib/galaxy/jobs/runners 2026-02-11T17:02:26,682 copying galaxy/jobs/runners/cli.py -> build/lib/galaxy/jobs/runners 2026-02-11T17:02:26,685 copying galaxy/jobs/runners/chronos.py -> build/lib/galaxy/jobs/runners 2026-02-11T17:02:26,687 copying galaxy/jobs/runners/drmaa.py -> build/lib/galaxy/jobs/runners 2026-02-11T17:02:26,691 copying galaxy/jobs/runners/pulsar.py -> build/lib/galaxy/jobs/runners 2026-02-11T17:02:26,695 copying galaxy/jobs/runners/local.py -> build/lib/galaxy/jobs/runners 2026-02-11T17:02:26,698 copying galaxy/jobs/runners/univa.py -> build/lib/galaxy/jobs/runners 2026-02-11T17:02:26,702 copying galaxy/jobs/runners/slurm.py -> build/lib/galaxy/jobs/runners 2026-02-11T17:02:26,705 copying galaxy/jobs/runners/state_handler_factory.py -> build/lib/galaxy/jobs/runners 2026-02-11T17:02:26,708 copying galaxy/jobs/runners/aws.py -> build/lib/galaxy/jobs/runners 2026-02-11T17:02:26,711 copying galaxy/jobs/runners/__init__.py -> build/lib/galaxy/jobs/runners 2026-02-11T17:02:26,715 copying galaxy/jobs/runners/godocker.py -> build/lib/galaxy/jobs/runners 2026-02-11T17:02:26,718 copying galaxy/jobs/runners/condor.py -> build/lib/galaxy/jobs/runners 2026-02-11T17:02:26,721 copying galaxy/jobs/runners/kubernetes.py -> build/lib/galaxy/jobs/runners 2026-02-11T17:02:26,725 copying galaxy/jobs/runners/pbs.py -> build/lib/galaxy/jobs/runners 2026-02-11T17:02:26,729 creating build/lib/galaxy/jobs/splitters 2026-02-11T17:02:26,730 copying galaxy/jobs/splitters/__init__.py -> build/lib/galaxy/jobs/splitters 2026-02-11T17:02:26,732 copying galaxy/jobs/splitters/multi.py -> build/lib/galaxy/jobs/splitters 2026-02-11T17:02:26,735 copying galaxy/jobs/splitters/basic.py -> build/lib/galaxy/jobs/splitters 2026-02-11T17:02:26,738 creating build/lib/galaxy/jobs/rules 2026-02-11T17:02:26,739 copying galaxy/jobs/rules/__init__.py -> build/lib/galaxy/jobs/rules 2026-02-11T17:02:26,742 creating build/lib/galaxy/jobs/runners/state_handlers 2026-02-11T17:02:26,743 copying galaxy/jobs/runners/state_handlers/resubmit.py -> build/lib/galaxy/jobs/runners/state_handlers 2026-02-11T17:02:26,746 copying galaxy/jobs/runners/state_handlers/__init__.py -> build/lib/galaxy/jobs/runners/state_handlers 2026-02-11T17:02:26,748 copying galaxy/jobs/runners/state_handlers/_safe_eval.py -> build/lib/galaxy/jobs/runners/state_handlers 2026-02-11T17:02:26,752 creating build/lib/galaxy/jobs/runners/util 2026-02-11T17:02:26,753 copying galaxy/jobs/runners/util/external.py -> build/lib/galaxy/jobs/runners/util 2026-02-11T17:02:26,756 copying galaxy/jobs/runners/util/pykube_util.py -> build/lib/galaxy/jobs/runners/util 2026-02-11T17:02:26,759 copying galaxy/jobs/runners/util/fork_safe_write.py -> build/lib/galaxy/jobs/runners/util 2026-02-11T17:02:26,761 copying galaxy/jobs/runners/util/kill.py -> build/lib/galaxy/jobs/runners/util 2026-02-11T17:02:26,764 copying galaxy/jobs/runners/util/env.py -> build/lib/galaxy/jobs/runners/util 2026-02-11T17:02:26,766 copying galaxy/jobs/runners/util/process_groups.py -> build/lib/galaxy/jobs/runners/util 2026-02-11T17:02:26,768 copying galaxy/jobs/runners/util/__init__.py -> build/lib/galaxy/jobs/runners/util 2026-02-11T17:02:26,770 copying galaxy/jobs/runners/util/sudo.py -> build/lib/galaxy/jobs/runners/util 2026-02-11T17:02:26,772 creating build/lib/galaxy/jobs/runners/util/cli 2026-02-11T17:02:26,774 copying galaxy/jobs/runners/util/cli/__init__.py -> build/lib/galaxy/jobs/runners/util/cli 2026-02-11T17:02:26,776 copying galaxy/jobs/runners/util/cli/factory.py -> build/lib/galaxy/jobs/runners/util/cli 2026-02-11T17:02:26,778 creating build/lib/galaxy/jobs/runners/util/job_script 2026-02-11T17:02:26,779 copying galaxy/jobs/runners/util/job_script/__init__.py -> build/lib/galaxy/jobs/runners/util/job_script 2026-02-11T17:02:26,782 creating build/lib/galaxy/jobs/runners/util/condor 2026-02-11T17:02:26,783 copying galaxy/jobs/runners/util/condor/__init__.py -> build/lib/galaxy/jobs/runners/util/condor 2026-02-11T17:02:26,786 creating build/lib/galaxy/jobs/runners/util/cli/shell 2026-02-11T17:02:26,787 copying galaxy/jobs/runners/util/cli/shell/rsh.py -> build/lib/galaxy/jobs/runners/util/cli/shell 2026-02-11T17:02:26,789 copying galaxy/jobs/runners/util/cli/shell/local.py -> build/lib/galaxy/jobs/runners/util/cli/shell 2026-02-11T17:02:26,791 copying galaxy/jobs/runners/util/cli/shell/__init__.py -> build/lib/galaxy/jobs/runners/util/cli/shell 2026-02-11T17:02:26,794 creating build/lib/galaxy/jobs/runners/util/cli/job 2026-02-11T17:02:26,795 copying galaxy/jobs/runners/util/cli/job/torque.py -> build/lib/galaxy/jobs/runners/util/cli/job 2026-02-11T17:02:26,797 copying galaxy/jobs/runners/util/cli/job/slurm.py -> build/lib/galaxy/jobs/runners/util/cli/job 2026-02-11T17:02:26,800 copying galaxy/jobs/runners/util/cli/job/__init__.py -> build/lib/galaxy/jobs/runners/util/cli/job 2026-02-11T17:02:26,802 copying galaxy/jobs/runners/util/cli/job/slurm_torque.py -> build/lib/galaxy/jobs/runners/util/cli/job 2026-02-11T17:02:26,804 copying galaxy/jobs/runners/util/cli/job/lsf.py -> build/lib/galaxy/jobs/runners/util/cli/job 2026-02-11T17:02:26,806 copying galaxy/jobs/runners/util/cli/job/pbs.py -> build/lib/galaxy/jobs/runners/util/cli/job 2026-02-11T17:02:26,808 creating build/lib/galaxy/tools/search 2026-02-11T17:02:26,809 copying galaxy/tools/search/__init__.py -> build/lib/galaxy/tools/search 2026-02-11T17:02:26,812 creating build/lib/galaxy/tools/filters 2026-02-11T17:02:26,813 copying galaxy/tools/filters/__init__.py -> build/lib/galaxy/tools/filters 2026-02-11T17:02:26,816 creating build/lib/galaxy/tools/data_manager 2026-02-11T17:02:26,817 copying galaxy/tools/data_manager/manager.py -> build/lib/galaxy/tools/data_manager 2026-02-11T17:02:26,819 copying galaxy/tools/data_manager/__init__.py -> build/lib/galaxy/tools/data_manager 2026-02-11T17:02:26,822 creating build/lib/galaxy/tools/imp_exp 2026-02-11T17:02:26,823 copying galaxy/tools/imp_exp/__init__.py -> build/lib/galaxy/tools/imp_exp 2026-02-11T17:02:26,825 copying galaxy/tools/imp_exp/unpack_tar_gz_archive.py -> build/lib/galaxy/tools/imp_exp 2026-02-11T17:02:26,827 copying galaxy/tools/imp_exp/export_history.py -> build/lib/galaxy/tools/imp_exp 2026-02-11T17:02:26,829 creating build/lib/galaxy/tools/fetch 2026-02-11T17:02:26,830 copying galaxy/tools/fetch/workbooks.py -> build/lib/galaxy/tools/fetch 2026-02-11T17:02:26,833 copying galaxy/tools/fetch/__init__.py -> build/lib/galaxy/tools/fetch 2026-02-11T17:02:26,835 creating build/lib/galaxy/tools/expressions 2026-02-11T17:02:26,836 copying galaxy/tools/expressions/script.py -> build/lib/galaxy/tools/expressions 2026-02-11T17:02:26,838 copying galaxy/tools/expressions/util.py -> build/lib/galaxy/tools/expressions 2026-02-11T17:02:26,840 copying galaxy/tools/expressions/__init__.py -> build/lib/galaxy/tools/expressions 2026-02-11T17:02:26,841 copying galaxy/tools/expressions/evaluation.py -> build/lib/galaxy/tools/expressions 2026-02-11T17:02:26,844 creating build/lib/galaxy/tools/util 2026-02-11T17:02:26,845 copying galaxy/tools/util/maf_utilities.py -> build/lib/galaxy/tools/util 2026-02-11T17:02:26,848 copying galaxy/tools/util/__init__.py -> build/lib/galaxy/tools/util 2026-02-11T17:02:26,850 creating build/lib/galaxy/tools/parameters 2026-02-11T17:02:26,851 copying galaxy/tools/parameters/dataset_matcher.py -> build/lib/galaxy/tools/parameters 2026-02-11T17:02:26,854 copying galaxy/tools/parameters/wrapped_json.py -> build/lib/galaxy/tools/parameters 2026-02-11T17:02:26,857 copying galaxy/tools/parameters/options.py -> build/lib/galaxy/tools/parameters 2026-02-11T17:02:26,859 copying galaxy/tools/parameters/workflow_utils.py -> build/lib/galaxy/tools/parameters 2026-02-11T17:02:26,861 copying galaxy/tools/parameters/input_translation.py -> build/lib/galaxy/tools/parameters 2026-02-11T17:02:26,863 copying galaxy/tools/parameters/populate_model.py -> build/lib/galaxy/tools/parameters 2026-02-11T17:02:26,865 copying galaxy/tools/parameters/wrapped.py -> build/lib/galaxy/tools/parameters 2026-02-11T17:02:26,868 copying galaxy/tools/parameters/meta.py -> build/lib/galaxy/tools/parameters 2026-02-11T17:02:26,871 copying galaxy/tools/parameters/sanitize.py -> build/lib/galaxy/tools/parameters 2026-02-11T17:02:26,873 copying galaxy/tools/parameters/validation.py -> build/lib/galaxy/tools/parameters 2026-02-11T17:02:26,876 copying galaxy/tools/parameters/__init__.py -> build/lib/galaxy/tools/parameters 2026-02-11T17:02:26,880 copying galaxy/tools/parameters/grouping.py -> build/lib/galaxy/tools/parameters 2026-02-11T17:02:26,883 copying galaxy/tools/parameters/dynamic_options.py -> build/lib/galaxy/tools/parameters 2026-02-11T17:02:26,886 copying galaxy/tools/parameters/basic.py -> build/lib/galaxy/tools/parameters 2026-02-11T17:02:26,891 copying galaxy/tools/parameters/cancelable_request.py -> build/lib/galaxy/tools/parameters 2026-02-11T17:02:26,893 creating build/lib/galaxy/tools/actions 2026-02-11T17:02:26,894 copying galaxy/tools/actions/upload.py -> build/lib/galaxy/tools/actions 2026-02-11T17:02:26,897 copying galaxy/tools/actions/model_operations.py -> build/lib/galaxy/tools/actions 2026-02-11T17:02:26,899 copying galaxy/tools/actions/data_source.py -> build/lib/galaxy/tools/actions 2026-02-11T17:02:26,901 copying galaxy/tools/actions/upload_common.py -> build/lib/galaxy/tools/actions 2026-02-11T17:02:26,903 copying galaxy/tools/actions/data_manager.py -> build/lib/galaxy/tools/actions 2026-02-11T17:02:26,905 copying galaxy/tools/actions/metadata.py -> build/lib/galaxy/tools/actions 2026-02-11T17:02:26,907 copying galaxy/tools/actions/__init__.py -> build/lib/galaxy/tools/actions 2026-02-11T17:02:26,911 copying galaxy/tools/actions/history_imp_exp.py -> build/lib/galaxy/tools/actions 2026-02-11T17:02:26,914 creating build/lib/galaxy/tools/error_reports 2026-02-11T17:02:26,915 copying galaxy/tools/error_reports/__init__.py -> build/lib/galaxy/tools/error_reports 2026-02-11T17:02:26,918 creating build/lib/galaxy/tools/data 2026-02-11T17:02:26,919 copying galaxy/tools/data/__init__.py -> build/lib/galaxy/tools/data 2026-02-11T17:02:26,922 creating build/lib/galaxy/tools/util/galaxyops 2026-02-11T17:02:26,923 copying galaxy/tools/util/galaxyops/__init__.py -> build/lib/galaxy/tools/util/galaxyops 2026-02-11T17:02:26,926 creating build/lib/galaxy/tools/error_reports/plugins 2026-02-11T17:02:26,927 copying galaxy/tools/error_reports/plugins/github.py -> build/lib/galaxy/tools/error_reports/plugins 2026-02-11T17:02:26,929 copying galaxy/tools/error_reports/plugins/slack.py -> build/lib/galaxy/tools/error_reports/plugins 2026-02-11T17:02:26,931 copying galaxy/tools/error_reports/plugins/influxdb.py -> build/lib/galaxy/tools/error_reports/plugins 2026-02-11T17:02:26,933 copying galaxy/tools/error_reports/plugins/gitlab.py -> build/lib/galaxy/tools/error_reports/plugins 2026-02-11T17:02:26,936 copying galaxy/tools/error_reports/plugins/json.py -> build/lib/galaxy/tools/error_reports/plugins 2026-02-11T17:02:26,938 copying galaxy/tools/error_reports/plugins/__init__.py -> build/lib/galaxy/tools/error_reports/plugins 2026-02-11T17:02:26,940 copying galaxy/tools/error_reports/plugins/base_git.py -> build/lib/galaxy/tools/error_reports/plugins 2026-02-11T17:02:26,942 copying galaxy/tools/error_reports/plugins/email.py -> build/lib/galaxy/tools/error_reports/plugins 2026-02-11T17:02:26,944 copying galaxy/tools/error_reports/plugins/sentry.py -> build/lib/galaxy/tools/error_reports/plugins 2026-02-11T17:02:26,946 creating build/lib/galaxy/visualization/plugins 2026-02-11T17:02:26,947 copying galaxy/visualization/plugins/resource_parser.py -> build/lib/galaxy/visualization/plugins 2026-02-11T17:02:26,950 copying galaxy/visualization/plugins/utils.py -> build/lib/galaxy/visualization/plugins 2026-02-11T17:02:26,952 copying galaxy/visualization/plugins/datasource_testing.py -> build/lib/galaxy/visualization/plugins 2026-02-11T17:02:26,954 copying galaxy/visualization/plugins/registry.py -> build/lib/galaxy/visualization/plugins 2026-02-11T17:02:26,957 copying galaxy/visualization/plugins/config_parser.py -> build/lib/galaxy/visualization/plugins 2026-02-11T17:02:26,959 copying galaxy/visualization/plugins/__init__.py -> build/lib/galaxy/visualization/plugins 2026-02-11T17:02:26,961 copying galaxy/visualization/plugins/plugin.py -> build/lib/galaxy/visualization/plugins 2026-02-11T17:02:26,964 creating build/lib/galaxy/visualization/genome 2026-02-11T17:02:26,965 copying galaxy/visualization/genome/__init__.py -> build/lib/galaxy/visualization/genome 2026-02-11T17:02:26,968 creating build/lib/galaxy/visualization/data_providers 2026-02-11T17:02:26,969 copying galaxy/visualization/data_providers/genome.py -> build/lib/galaxy/visualization/data_providers 2026-02-11T17:02:26,973 copying galaxy/visualization/data_providers/cigar.py -> build/lib/galaxy/visualization/data_providers 2026-02-11T17:02:26,975 copying galaxy/visualization/data_providers/registry.py -> build/lib/galaxy/visualization/data_providers 2026-02-11T17:02:26,977 copying galaxy/visualization/data_providers/__init__.py -> build/lib/galaxy/visualization/data_providers 2026-02-11T17:02:26,979 copying galaxy/visualization/data_providers/basic.py -> build/lib/galaxy/visualization/data_providers 2026-02-11T17:02:26,982 creating build/lib/galaxy/visualization/tracks 2026-02-11T17:02:26,983 copying galaxy/visualization/tracks/__init__.py -> build/lib/galaxy/visualization/tracks 2026-02-11T17:02:26,985 creating build/lib/galaxy/visualization/data_providers/phyloviz 2026-02-11T17:02:26,986 copying galaxy/visualization/data_providers/phyloviz/newickparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2026-02-11T17:02:26,988 copying galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2026-02-11T17:02:26,991 copying galaxy/visualization/data_providers/phyloviz/nexusparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2026-02-11T17:02:26,992 copying galaxy/visualization/data_providers/phyloviz/baseparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2026-02-11T17:02:26,995 copying galaxy/visualization/data_providers/phyloviz/__init__.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2026-02-11T17:02:26,997 creating build/lib/galaxy_ext/metadata 2026-02-11T17:02:26,998 copying galaxy_ext/metadata/__init__.py -> build/lib/galaxy_ext/metadata 2026-02-11T17:02:27,000 copying galaxy_ext/metadata/set_metadata.py -> build/lib/galaxy_ext/metadata 2026-02-11T17:02:27,002 creating build/lib/galaxy_ext/container_monitor 2026-02-11T17:02:27,003 copying galaxy_ext/container_monitor/__init__.py -> build/lib/galaxy_ext/container_monitor 2026-02-11T17:02:27,005 copying galaxy_ext/container_monitor/monitor.py -> build/lib/galaxy_ext/container_monitor 2026-02-11T17:02:27,007 creating build/lib/galaxy_ext/expressions 2026-02-11T17:02:27,008 copying galaxy_ext/expressions/__init__.py -> build/lib/galaxy_ext/expressions 2026-02-11T17:02:27,010 copying galaxy_ext/expressions/handle_job.py -> build/lib/galaxy_ext/expressions 2026-02-11T17:02:27,012 running egg_info 2026-02-11T17:02:27,022 writing galaxy_app.egg-info/PKG-INFO 2026-02-11T17:02:27,035 writing dependency_links to galaxy_app.egg-info/dependency_links.txt 2026-02-11T17:02:27,036 writing entry points to galaxy_app.egg-info/entry_points.txt 2026-02-11T17:02:27,038 writing requirements to galaxy_app.egg-info/requires.txt 2026-02-11T17:02:27,040 writing top-level names to galaxy_app.egg-info/top_level.txt 2026-02-11T17:02:27,105 reading manifest file 'galaxy_app.egg-info/SOURCES.txt' 2026-02-11T17:02:27,138 reading manifest template 'MANIFEST.in' 2026-02-11T17:02:27,638 adding license file 'LICENSE' 2026-02-11T17:02:27,668 writing manifest file 'galaxy_app.egg-info/SOURCES.txt' 2026-02-11T17:02:27,673 /tmp/pip-build-env-a0bnc9bn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled' is absent from the `packages` configuration. 2026-02-11T17:02:27,674 !! 2026-02-11T17:02:27,675 ******************************************************************************** 2026-02-11T17:02:27,675 ############################ 2026-02-11T17:02:27,676 # Package would be ignored # 2026-02-11T17:02:27,676 ############################ 2026-02-11T17:02:27,677 Python recognizes 'galaxy.tools.bundled' as an importable package[^1], 2026-02-11T17:02:27,678 but it is absent from setuptools' `packages` configuration. 2026-02-11T17:02:27,679 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-11T17:02:27,679 package, please make sure that 'galaxy.tools.bundled' is explicitly added 2026-02-11T17:02:27,680 to the `packages` configuration field. 2026-02-11T17:02:27,681 Alternatively, you can also rely on setuptools' discovery methods 2026-02-11T17:02:27,681 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-11T17:02:27,682 instead of `find_packages(...)`/`find:`). 2026-02-11T17:02:27,683 You can read more about "package discovery" on setuptools documentation page: 2026-02-11T17:02:27,683 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-11T17:02:27,684 If you don't want 'galaxy.tools.bundled' to be distributed and are 2026-02-11T17:02:27,685 already explicitly excluding 'galaxy.tools.bundled' via 2026-02-11T17:02:27,685 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-11T17:02:27,686 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-11T17:02:27,686 combination with a more fine grained `package-data` configuration. 2026-02-11T17:02:27,687 You can read more about "package data files" on setuptools documentation page: 2026-02-11T17:02:27,688 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-11T17:02:27,690 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-11T17:02:27,690 even if it does not contain any `.py` files. 2026-02-11T17:02:27,691 On the other hand, currently there is no concept of package data 2026-02-11T17:02:27,691 directory, all directories are treated like packages. 2026-02-11T17:02:27,692 ******************************************************************************** 2026-02-11T17:02:27,693 !! 2026-02-11T17:02:27,693 check.warn(importable) 2026-02-11T17:02:27,694 /tmp/pip-build-env-a0bnc9bn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.data_export' is absent from the `packages` configuration. 2026-02-11T17:02:27,694 !! 2026-02-11T17:02:27,695 ******************************************************************************** 2026-02-11T17:02:27,696 ############################ 2026-02-11T17:02:27,696 # Package would be ignored # 2026-02-11T17:02:27,697 ############################ 2026-02-11T17:02:27,698 Python recognizes 'galaxy.tools.bundled.data_export' as an importable package[^1], 2026-02-11T17:02:27,698 but it is absent from setuptools' `packages` configuration. 2026-02-11T17:02:27,699 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-11T17:02:27,700 package, please make sure that 'galaxy.tools.bundled.data_export' is explicitly added 2026-02-11T17:02:27,701 to the `packages` configuration field. 2026-02-11T17:02:27,702 Alternatively, you can also rely on setuptools' discovery methods 2026-02-11T17:02:27,702 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-11T17:02:27,703 instead of `find_packages(...)`/`find:`). 2026-02-11T17:02:27,704 You can read more about "package discovery" on setuptools documentation page: 2026-02-11T17:02:27,705 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-11T17:02:27,706 If you don't want 'galaxy.tools.bundled.data_export' to be distributed and are 2026-02-11T17:02:27,707 already explicitly excluding 'galaxy.tools.bundled.data_export' via 2026-02-11T17:02:27,708 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-11T17:02:27,708 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-11T17:02:27,709 combination with a more fine grained `package-data` configuration. 2026-02-11T17:02:27,710 You can read more about "package data files" on setuptools documentation page: 2026-02-11T17:02:27,711 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-11T17:02:27,712 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-11T17:02:27,713 even if it does not contain any `.py` files. 2026-02-11T17:02:27,713 On the other hand, currently there is no concept of package data 2026-02-11T17:02:27,714 directory, all directories are treated like packages. 2026-02-11T17:02:27,714 ******************************************************************************** 2026-02-11T17:02:27,715 !! 2026-02-11T17:02:27,715 check.warn(importable) 2026-02-11T17:02:27,715 /tmp/pip-build-env-a0bnc9bn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.data_source' is absent from the `packages` configuration. 2026-02-11T17:02:27,716 !! 2026-02-11T17:02:27,717 ******************************************************************************** 2026-02-11T17:02:27,717 ############################ 2026-02-11T17:02:27,718 # Package would be ignored # 2026-02-11T17:02:27,718 ############################ 2026-02-11T17:02:27,719 Python recognizes 'galaxy.tools.bundled.data_source' as an importable package[^1], 2026-02-11T17:02:27,719 but it is absent from setuptools' `packages` configuration. 2026-02-11T17:02:27,720 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-11T17:02:27,721 package, please make sure that 'galaxy.tools.bundled.data_source' is explicitly added 2026-02-11T17:02:27,721 to the `packages` configuration field. 2026-02-11T17:02:27,722 Alternatively, you can also rely on setuptools' discovery methods 2026-02-11T17:02:27,722 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-11T17:02:27,723 instead of `find_packages(...)`/`find:`). 2026-02-11T17:02:27,724 You can read more about "package discovery" on setuptools documentation page: 2026-02-11T17:02:27,725 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-11T17:02:27,726 If you don't want 'galaxy.tools.bundled.data_source' to be distributed and are 2026-02-11T17:02:27,727 already explicitly excluding 'galaxy.tools.bundled.data_source' via 2026-02-11T17:02:27,728 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-11T17:02:27,728 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-11T17:02:27,729 combination with a more fine grained `package-data` configuration. 2026-02-11T17:02:27,730 You can read more about "package data files" on setuptools documentation page: 2026-02-11T17:02:27,731 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-11T17:02:27,733 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-11T17:02:27,733 even if it does not contain any `.py` files. 2026-02-11T17:02:27,734 On the other hand, currently there is no concept of package data 2026-02-11T17:02:27,734 directory, all directories are treated like packages. 2026-02-11T17:02:27,735 ******************************************************************************** 2026-02-11T17:02:27,736 !! 2026-02-11T17:02:27,737 check.warn(importable) 2026-02-11T17:02:27,737 /tmp/pip-build-env-a0bnc9bn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.expression_tools' is absent from the `packages` configuration. 2026-02-11T17:02:27,738 !! 2026-02-11T17:02:27,739 ******************************************************************************** 2026-02-11T17:02:27,740 ############################ 2026-02-11T17:02:27,741 # Package would be ignored # 2026-02-11T17:02:27,741 ############################ 2026-02-11T17:02:27,742 Python recognizes 'galaxy.tools.bundled.expression_tools' as an importable package[^1], 2026-02-11T17:02:27,742 but it is absent from setuptools' `packages` configuration. 2026-02-11T17:02:27,743 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-11T17:02:27,744 package, please make sure that 'galaxy.tools.bundled.expression_tools' is explicitly added 2026-02-11T17:02:27,744 to the `packages` configuration field. 2026-02-11T17:02:27,745 Alternatively, you can also rely on setuptools' discovery methods 2026-02-11T17:02:27,746 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-11T17:02:27,746 instead of `find_packages(...)`/`find:`). 2026-02-11T17:02:27,747 You can read more about "package discovery" on setuptools documentation page: 2026-02-11T17:02:27,748 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-11T17:02:27,749 If you don't want 'galaxy.tools.bundled.expression_tools' to be distributed and are 2026-02-11T17:02:27,750 already explicitly excluding 'galaxy.tools.bundled.expression_tools' via 2026-02-11T17:02:27,750 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-11T17:02:27,751 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-11T17:02:27,751 combination with a more fine grained `package-data` configuration. 2026-02-11T17:02:27,752 You can read more about "package data files" on setuptools documentation page: 2026-02-11T17:02:27,753 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-11T17:02:27,755 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-11T17:02:27,755 even if it does not contain any `.py` files. 2026-02-11T17:02:27,756 On the other hand, currently there is no concept of package data 2026-02-11T17:02:27,756 directory, all directories are treated like packages. 2026-02-11T17:02:27,757 ******************************************************************************** 2026-02-11T17:02:27,763 !! 2026-02-11T17:02:27,764 check.warn(importable) 2026-02-11T17:02:27,765 /tmp/pip-build-env-a0bnc9bn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.extract' is absent from the `packages` configuration. 2026-02-11T17:02:27,767 !! 2026-02-11T17:02:27,768 ******************************************************************************** 2026-02-11T17:02:27,768 ############################ 2026-02-11T17:02:27,769 # Package would be ignored # 2026-02-11T17:02:27,769 ############################ 2026-02-11T17:02:27,770 Python recognizes 'galaxy.tools.bundled.extract' as an importable package[^1], 2026-02-11T17:02:27,770 but it is absent from setuptools' `packages` configuration. 2026-02-11T17:02:27,771 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-11T17:02:27,772 package, please make sure that 'galaxy.tools.bundled.extract' is explicitly added 2026-02-11T17:02:27,772 to the `packages` configuration field. 2026-02-11T17:02:27,773 Alternatively, you can also rely on setuptools' discovery methods 2026-02-11T17:02:27,774 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-11T17:02:27,774 instead of `find_packages(...)`/`find:`). 2026-02-11T17:02:27,775 You can read more about "package discovery" on setuptools documentation page: 2026-02-11T17:02:27,777 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-11T17:02:27,778 If you don't want 'galaxy.tools.bundled.extract' to be distributed and are 2026-02-11T17:02:27,778 already explicitly excluding 'galaxy.tools.bundled.extract' via 2026-02-11T17:02:27,778 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-11T17:02:27,779 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-11T17:02:27,779 combination with a more fine grained `package-data` configuration. 2026-02-11T17:02:27,780 You can read more about "package data files" on setuptools documentation page: 2026-02-11T17:02:27,781 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-11T17:02:27,783 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-11T17:02:27,783 even if it does not contain any `.py` files. 2026-02-11T17:02:27,783 On the other hand, currently there is no concept of package data 2026-02-11T17:02:27,784 directory, all directories are treated like packages. 2026-02-11T17:02:27,784 ******************************************************************************** 2026-02-11T17:02:27,785 !! 2026-02-11T17:02:27,786 check.warn(importable) 2026-02-11T17:02:27,786 /tmp/pip-build-env-a0bnc9bn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.filters' is absent from the `packages` configuration. 2026-02-11T17:02:27,787 !! 2026-02-11T17:02:27,788 ******************************************************************************** 2026-02-11T17:02:27,788 ############################ 2026-02-11T17:02:27,789 # Package would be ignored # 2026-02-11T17:02:27,789 ############################ 2026-02-11T17:02:27,790 Python recognizes 'galaxy.tools.bundled.filters' as an importable package[^1], 2026-02-11T17:02:27,790 but it is absent from setuptools' `packages` configuration. 2026-02-11T17:02:27,791 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-11T17:02:27,792 package, please make sure that 'galaxy.tools.bundled.filters' is explicitly added 2026-02-11T17:02:27,792 to the `packages` configuration field. 2026-02-11T17:02:27,793 Alternatively, you can also rely on setuptools' discovery methods 2026-02-11T17:02:27,794 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-11T17:02:27,794 instead of `find_packages(...)`/`find:`). 2026-02-11T17:02:27,795 You can read more about "package discovery" on setuptools documentation page: 2026-02-11T17:02:27,796 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-11T17:02:27,797 If you don't want 'galaxy.tools.bundled.filters' to be distributed and are 2026-02-11T17:02:27,798 already explicitly excluding 'galaxy.tools.bundled.filters' via 2026-02-11T17:02:27,798 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-11T17:02:27,799 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-11T17:02:27,799 combination with a more fine grained `package-data` configuration. 2026-02-11T17:02:27,800 You can read more about "package data files" on setuptools documentation page: 2026-02-11T17:02:27,801 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-11T17:02:27,803 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-11T17:02:27,804 even if it does not contain any `.py` files. 2026-02-11T17:02:27,804 On the other hand, currently there is no concept of package data 2026-02-11T17:02:27,805 directory, all directories are treated like packages. 2026-02-11T17:02:27,805 ******************************************************************************** 2026-02-11T17:02:27,807 !! 2026-02-11T17:02:27,807 check.warn(importable) 2026-02-11T17:02:27,808 /tmp/pip-build-env-a0bnc9bn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.filters.gff' is absent from the `packages` configuration. 2026-02-11T17:02:27,808 !! 2026-02-11T17:02:27,809 ******************************************************************************** 2026-02-11T17:02:27,809 ############################ 2026-02-11T17:02:27,810 # Package would be ignored # 2026-02-11T17:02:27,810 ############################ 2026-02-11T17:02:27,810 Python recognizes 'galaxy.tools.bundled.filters.gff' as an importable package[^1], 2026-02-11T17:02:27,811 but it is absent from setuptools' `packages` configuration. 2026-02-11T17:02:27,812 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-11T17:02:27,812 package, please make sure that 'galaxy.tools.bundled.filters.gff' is explicitly added 2026-02-11T17:02:27,813 to the `packages` configuration field. 2026-02-11T17:02:27,814 Alternatively, you can also rely on setuptools' discovery methods 2026-02-11T17:02:27,814 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-11T17:02:27,815 instead of `find_packages(...)`/`find:`). 2026-02-11T17:02:27,815 You can read more about "package discovery" on setuptools documentation page: 2026-02-11T17:02:27,816 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-11T17:02:27,818 If you don't want 'galaxy.tools.bundled.filters.gff' to be distributed and are 2026-02-11T17:02:27,818 already explicitly excluding 'galaxy.tools.bundled.filters.gff' via 2026-02-11T17:02:27,818 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-11T17:02:27,819 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-11T17:02:27,819 combination with a more fine grained `package-data` configuration. 2026-02-11T17:02:27,820 You can read more about "package data files" on setuptools documentation page: 2026-02-11T17:02:27,821 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-11T17:02:27,823 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-11T17:02:27,823 even if it does not contain any `.py` files. 2026-02-11T17:02:27,824 On the other hand, currently there is no concept of package data 2026-02-11T17:02:27,825 directory, all directories are treated like packages. 2026-02-11T17:02:27,825 ******************************************************************************** 2026-02-11T17:02:27,826 !! 2026-02-11T17:02:27,827 check.warn(importable) 2026-02-11T17:02:27,827 /tmp/pip-build-env-a0bnc9bn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.interactive' is absent from the `packages` configuration. 2026-02-11T17:02:27,828 !! 2026-02-11T17:02:27,829 ******************************************************************************** 2026-02-11T17:02:27,829 ############################ 2026-02-11T17:02:27,830 # Package would be ignored # 2026-02-11T17:02:27,830 ############################ 2026-02-11T17:02:27,831 Python recognizes 'galaxy.tools.bundled.interactive' as an importable package[^1], 2026-02-11T17:02:27,831 but it is absent from setuptools' `packages` configuration. 2026-02-11T17:02:27,832 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-11T17:02:27,833 package, please make sure that 'galaxy.tools.bundled.interactive' is explicitly added 2026-02-11T17:02:27,834 to the `packages` configuration field. 2026-02-11T17:02:27,835 Alternatively, you can also rely on setuptools' discovery methods 2026-02-11T17:02:27,835 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-11T17:02:27,835 instead of `find_packages(...)`/`find:`). 2026-02-11T17:02:27,836 You can read more about "package discovery" on setuptools documentation page: 2026-02-11T17:02:27,837 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-11T17:02:27,838 If you don't want 'galaxy.tools.bundled.interactive' to be distributed and are 2026-02-11T17:02:27,839 already explicitly excluding 'galaxy.tools.bundled.interactive' via 2026-02-11T17:02:27,839 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-11T17:02:27,839 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-11T17:02:27,840 combination with a more fine grained `package-data` configuration. 2026-02-11T17:02:27,841 You can read more about "package data files" on setuptools documentation page: 2026-02-11T17:02:27,842 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-11T17:02:27,843 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-11T17:02:27,843 even if it does not contain any `.py` files. 2026-02-11T17:02:27,844 On the other hand, currently there is no concept of package data 2026-02-11T17:02:27,844 directory, all directories are treated like packages. 2026-02-11T17:02:27,845 ******************************************************************************** 2026-02-11T17:02:27,846 !! 2026-02-11T17:02:27,846 check.warn(importable) 2026-02-11T17:02:27,847 /tmp/pip-build-env-a0bnc9bn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.maf' is absent from the `packages` configuration. 2026-02-11T17:02:27,847 !! 2026-02-11T17:02:27,848 ******************************************************************************** 2026-02-11T17:02:27,849 ############################ 2026-02-11T17:02:27,849 # Package would be ignored # 2026-02-11T17:02:27,850 ############################ 2026-02-11T17:02:27,850 Python recognizes 'galaxy.tools.bundled.maf' as an importable package[^1], 2026-02-11T17:02:27,851 but it is absent from setuptools' `packages` configuration. 2026-02-11T17:02:27,852 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-11T17:02:27,852 package, please make sure that 'galaxy.tools.bundled.maf' is explicitly added 2026-02-11T17:02:27,853 to the `packages` configuration field. 2026-02-11T17:02:27,854 Alternatively, you can also rely on setuptools' discovery methods 2026-02-11T17:02:27,855 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-11T17:02:27,855 instead of `find_packages(...)`/`find:`). 2026-02-11T17:02:27,856 You can read more about "package discovery" on setuptools documentation page: 2026-02-11T17:02:27,857 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-11T17:02:27,858 If you don't want 'galaxy.tools.bundled.maf' to be distributed and are 2026-02-11T17:02:27,859 already explicitly excluding 'galaxy.tools.bundled.maf' via 2026-02-11T17:02:27,860 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-11T17:02:27,860 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-11T17:02:27,861 combination with a more fine grained `package-data` configuration. 2026-02-11T17:02:27,862 You can read more about "package data files" on setuptools documentation page: 2026-02-11T17:02:27,863 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-11T17:02:27,864 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-11T17:02:27,864 even if it does not contain any `.py` files. 2026-02-11T17:02:27,865 On the other hand, currently there is no concept of package data 2026-02-11T17:02:27,865 directory, all directories are treated like packages. 2026-02-11T17:02:27,865 ******************************************************************************** 2026-02-11T17:02:27,866 !! 2026-02-11T17:02:27,867 check.warn(importable) 2026-02-11T17:02:27,867 /tmp/pip-build-env-a0bnc9bn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.meme' is absent from the `packages` configuration. 2026-02-11T17:02:27,867 !! 2026-02-11T17:02:27,868 ******************************************************************************** 2026-02-11T17:02:27,869 ############################ 2026-02-11T17:02:27,869 # Package would be ignored # 2026-02-11T17:02:27,870 ############################ 2026-02-11T17:02:27,870 Python recognizes 'galaxy.tools.bundled.meme' as an importable package[^1], 2026-02-11T17:02:27,871 but it is absent from setuptools' `packages` configuration. 2026-02-11T17:02:27,872 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-11T17:02:27,872 package, please make sure that 'galaxy.tools.bundled.meme' is explicitly added 2026-02-11T17:02:27,873 to the `packages` configuration field. 2026-02-11T17:02:27,874 Alternatively, you can also rely on setuptools' discovery methods 2026-02-11T17:02:27,875 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-11T17:02:27,875 instead of `find_packages(...)`/`find:`). 2026-02-11T17:02:27,876 You can read more about "package discovery" on setuptools documentation page: 2026-02-11T17:02:27,877 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-11T17:02:27,878 If you don't want 'galaxy.tools.bundled.meme' to be distributed and are 2026-02-11T17:02:27,879 already explicitly excluding 'galaxy.tools.bundled.meme' via 2026-02-11T17:02:27,879 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-11T17:02:27,880 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-11T17:02:27,880 combination with a more fine grained `package-data` configuration. 2026-02-11T17:02:27,881 You can read more about "package data files" on setuptools documentation page: 2026-02-11T17:02:27,882 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-11T17:02:27,884 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-11T17:02:27,884 even if it does not contain any `.py` files. 2026-02-11T17:02:27,885 On the other hand, currently there is no concept of package data 2026-02-11T17:02:27,885 directory, all directories are treated like packages. 2026-02-11T17:02:27,886 ******************************************************************************** 2026-02-11T17:02:27,887 !! 2026-02-11T17:02:27,887 check.warn(importable) 2026-02-11T17:02:27,888 /tmp/pip-build-env-a0bnc9bn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.metag_tools' is absent from the `packages` configuration. 2026-02-11T17:02:27,888 !! 2026-02-11T17:02:27,889 ******************************************************************************** 2026-02-11T17:02:27,890 ############################ 2026-02-11T17:02:27,890 # Package would be ignored # 2026-02-11T17:02:27,891 ############################ 2026-02-11T17:02:27,891 Python recognizes 'galaxy.tools.bundled.metag_tools' as an importable package[^1], 2026-02-11T17:02:27,892 but it is absent from setuptools' `packages` configuration. 2026-02-11T17:02:27,892 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-11T17:02:27,893 package, please make sure that 'galaxy.tools.bundled.metag_tools' is explicitly added 2026-02-11T17:02:27,893 to the `packages` configuration field. 2026-02-11T17:02:27,894 Alternatively, you can also rely on setuptools' discovery methods 2026-02-11T17:02:27,894 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-11T17:02:27,895 instead of `find_packages(...)`/`find:`). 2026-02-11T17:02:27,896 You can read more about "package discovery" on setuptools documentation page: 2026-02-11T17:02:27,897 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-11T17:02:27,897 If you don't want 'galaxy.tools.bundled.metag_tools' to be distributed and are 2026-02-11T17:02:27,898 already explicitly excluding 'galaxy.tools.bundled.metag_tools' via 2026-02-11T17:02:27,898 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-11T17:02:27,899 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-11T17:02:27,899 combination with a more fine grained `package-data` configuration. 2026-02-11T17:02:27,900 You can read more about "package data files" on setuptools documentation page: 2026-02-11T17:02:27,901 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-11T17:02:27,902 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-11T17:02:27,903 even if it does not contain any `.py` files. 2026-02-11T17:02:27,903 On the other hand, currently there is no concept of package data 2026-02-11T17:02:27,904 directory, all directories are treated like packages. 2026-02-11T17:02:27,904 ******************************************************************************** 2026-02-11T17:02:27,905 !! 2026-02-11T17:02:27,906 check.warn(importable) 2026-02-11T17:02:27,906 /tmp/pip-build-env-a0bnc9bn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.next_gen_conversion' is absent from the `packages` configuration. 2026-02-11T17:02:27,907 !! 2026-02-11T17:02:27,908 ******************************************************************************** 2026-02-11T17:02:27,908 ############################ 2026-02-11T17:02:27,909 # Package would be ignored # 2026-02-11T17:02:27,909 ############################ 2026-02-11T17:02:27,910 Python recognizes 'galaxy.tools.bundled.next_gen_conversion' as an importable package[^1], 2026-02-11T17:02:27,910 but it is absent from setuptools' `packages` configuration. 2026-02-11T17:02:27,911 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-11T17:02:27,912 package, please make sure that 'galaxy.tools.bundled.next_gen_conversion' is explicitly added 2026-02-11T17:02:27,912 to the `packages` configuration field. 2026-02-11T17:02:27,913 Alternatively, you can also rely on setuptools' discovery methods 2026-02-11T17:02:27,914 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-11T17:02:27,914 instead of `find_packages(...)`/`find:`). 2026-02-11T17:02:27,915 You can read more about "package discovery" on setuptools documentation page: 2026-02-11T17:02:27,916 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-11T17:02:27,918 If you don't want 'galaxy.tools.bundled.next_gen_conversion' to be distributed and are 2026-02-11T17:02:27,918 already explicitly excluding 'galaxy.tools.bundled.next_gen_conversion' via 2026-02-11T17:02:27,918 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-11T17:02:27,919 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-11T17:02:27,919 combination with a more fine grained `package-data` configuration. 2026-02-11T17:02:27,920 You can read more about "package data files" on setuptools documentation page: 2026-02-11T17:02:27,921 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-11T17:02:27,922 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-11T17:02:27,923 even if it does not contain any `.py` files. 2026-02-11T17:02:27,923 On the other hand, currently there is no concept of package data 2026-02-11T17:02:27,924 directory, all directories are treated like packages. 2026-02-11T17:02:27,924 ******************************************************************************** 2026-02-11T17:02:27,925 !! 2026-02-11T17:02:27,925 check.warn(importable) 2026-02-11T17:02:27,926 /tmp/pip-build-env-a0bnc9bn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.ngs_simulation' is absent from the `packages` configuration. 2026-02-11T17:02:27,926 !! 2026-02-11T17:02:27,927 ******************************************************************************** 2026-02-11T17:02:27,928 ############################ 2026-02-11T17:02:27,928 # Package would be ignored # 2026-02-11T17:02:27,929 ############################ 2026-02-11T17:02:27,929 Python recognizes 'galaxy.tools.bundled.ngs_simulation' as an importable package[^1], 2026-02-11T17:02:27,930 but it is absent from setuptools' `packages` configuration. 2026-02-11T17:02:27,931 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-11T17:02:27,931 package, please make sure that 'galaxy.tools.bundled.ngs_simulation' is explicitly added 2026-02-11T17:02:27,932 to the `packages` configuration field. 2026-02-11T17:02:27,932 Alternatively, you can also rely on setuptools' discovery methods 2026-02-11T17:02:27,933 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-11T17:02:27,933 instead of `find_packages(...)`/`find:`). 2026-02-11T17:02:27,934 You can read more about "package discovery" on setuptools documentation page: 2026-02-11T17:02:27,935 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-11T17:02:27,936 If you don't want 'galaxy.tools.bundled.ngs_simulation' to be distributed and are 2026-02-11T17:02:27,937 already explicitly excluding 'galaxy.tools.bundled.ngs_simulation' via 2026-02-11T17:02:27,937 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-11T17:02:27,938 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-11T17:02:27,938 combination with a more fine grained `package-data` configuration. 2026-02-11T17:02:27,939 You can read more about "package data files" on setuptools documentation page: 2026-02-11T17:02:27,940 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-11T17:02:27,942 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-11T17:02:27,942 even if it does not contain any `.py` files. 2026-02-11T17:02:27,943 On the other hand, currently there is no concept of package data 2026-02-11T17:02:27,943 directory, all directories are treated like packages. 2026-02-11T17:02:27,944 ******************************************************************************** 2026-02-11T17:02:27,945 !! 2026-02-11T17:02:27,945 check.warn(importable) 2026-02-11T17:02:27,946 /tmp/pip-build-env-a0bnc9bn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.phenotype_association' is absent from the `packages` configuration. 2026-02-11T17:02:27,946 !! 2026-02-11T17:02:27,947 ******************************************************************************** 2026-02-11T17:02:27,948 ############################ 2026-02-11T17:02:27,948 # Package would be ignored # 2026-02-11T17:02:27,948 ############################ 2026-02-11T17:02:27,949 Python recognizes 'galaxy.tools.bundled.phenotype_association' as an importable package[^1], 2026-02-11T17:02:27,949 but it is absent from setuptools' `packages` configuration. 2026-02-11T17:02:27,950 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-11T17:02:27,951 package, please make sure that 'galaxy.tools.bundled.phenotype_association' is explicitly added 2026-02-11T17:02:27,951 to the `packages` configuration field. 2026-02-11T17:02:27,952 Alternatively, you can also rely on setuptools' discovery methods 2026-02-11T17:02:27,952 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-11T17:02:27,953 instead of `find_packages(...)`/`find:`). 2026-02-11T17:02:27,954 You can read more about "package discovery" on setuptools documentation page: 2026-02-11T17:02:27,954 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-11T17:02:27,955 If you don't want 'galaxy.tools.bundled.phenotype_association' to be distributed and are 2026-02-11T17:02:27,956 already explicitly excluding 'galaxy.tools.bundled.phenotype_association' via 2026-02-11T17:02:27,956 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-11T17:02:27,957 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-11T17:02:27,957 combination with a more fine grained `package-data` configuration. 2026-02-11T17:02:27,958 You can read more about "package data files" on setuptools documentation page: 2026-02-11T17:02:27,959 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-11T17:02:27,961 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-11T17:02:27,961 even if it does not contain any `.py` files. 2026-02-11T17:02:27,962 On the other hand, currently there is no concept of package data 2026-02-11T17:02:27,962 directory, all directories are treated like packages. 2026-02-11T17:02:27,963 ******************************************************************************** 2026-02-11T17:02:27,964 !! 2026-02-11T17:02:27,964 check.warn(importable) 2026-02-11T17:02:27,965 /tmp/pip-build-env-a0bnc9bn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.plotting' is absent from the `packages` configuration. 2026-02-11T17:02:27,965 !! 2026-02-11T17:02:27,966 ******************************************************************************** 2026-02-11T17:02:27,967 ############################ 2026-02-11T17:02:27,967 # Package would be ignored # 2026-02-11T17:02:27,968 ############################ 2026-02-11T17:02:27,968 Python recognizes 'galaxy.tools.bundled.plotting' as an importable package[^1], 2026-02-11T17:02:27,969 but it is absent from setuptools' `packages` configuration. 2026-02-11T17:02:27,970 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-11T17:02:27,971 package, please make sure that 'galaxy.tools.bundled.plotting' is explicitly added 2026-02-11T17:02:27,971 to the `packages` configuration field. 2026-02-11T17:02:27,972 Alternatively, you can also rely on setuptools' discovery methods 2026-02-11T17:02:27,972 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-11T17:02:27,973 instead of `find_packages(...)`/`find:`). 2026-02-11T17:02:27,974 You can read more about "package discovery" on setuptools documentation page: 2026-02-11T17:02:27,975 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-11T17:02:27,975 If you don't want 'galaxy.tools.bundled.plotting' to be distributed and are 2026-02-11T17:02:27,976 already explicitly excluding 'galaxy.tools.bundled.plotting' via 2026-02-11T17:02:27,976 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-11T17:02:27,977 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-11T17:02:27,977 combination with a more fine grained `package-data` configuration. 2026-02-11T17:02:27,978 You can read more about "package data files" on setuptools documentation page: 2026-02-11T17:02:27,979 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-11T17:02:27,980 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-11T17:02:27,980 even if it does not contain any `.py` files. 2026-02-11T17:02:27,981 On the other hand, currently there is no concept of package data 2026-02-11T17:02:27,981 directory, all directories are treated like packages. 2026-02-11T17:02:27,982 ******************************************************************************** 2026-02-11T17:02:27,983 !! 2026-02-11T17:02:27,983 check.warn(importable) 2026-02-11T17:02:27,983 /tmp/pip-build-env-a0bnc9bn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.solid_tools' is absent from the `packages` configuration. 2026-02-11T17:02:27,984 !! 2026-02-11T17:02:27,985 ******************************************************************************** 2026-02-11T17:02:27,985 ############################ 2026-02-11T17:02:27,986 # Package would be ignored # 2026-02-11T17:02:27,986 ############################ 2026-02-11T17:02:27,987 Python recognizes 'galaxy.tools.bundled.solid_tools' as an importable package[^1], 2026-02-11T17:02:27,987 but it is absent from setuptools' `packages` configuration. 2026-02-11T17:02:27,988 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-11T17:02:27,989 package, please make sure that 'galaxy.tools.bundled.solid_tools' is explicitly added 2026-02-11T17:02:27,989 to the `packages` configuration field. 2026-02-11T17:02:27,990 Alternatively, you can also rely on setuptools' discovery methods 2026-02-11T17:02:27,990 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-11T17:02:27,991 instead of `find_packages(...)`/`find:`). 2026-02-11T17:02:27,992 You can read more about "package discovery" on setuptools documentation page: 2026-02-11T17:02:27,993 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-11T17:02:27,994 If you don't want 'galaxy.tools.bundled.solid_tools' to be distributed and are 2026-02-11T17:02:27,994 already explicitly excluding 'galaxy.tools.bundled.solid_tools' via 2026-02-11T17:02:27,995 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-11T17:02:27,995 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-11T17:02:27,996 combination with a more fine grained `package-data` configuration. 2026-02-11T17:02:27,997 You can read more about "package data files" on setuptools documentation page: 2026-02-11T17:02:27,998 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-11T17:02:27,999 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-11T17:02:27,999 even if it does not contain any `.py` files. 2026-02-11T17:02:28,000 On the other hand, currently there is no concept of package data 2026-02-11T17:02:28,000 directory, all directories are treated like packages. 2026-02-11T17:02:28,001 ******************************************************************************** 2026-02-11T17:02:28,002 !! 2026-02-11T17:02:28,002 check.warn(importable) 2026-02-11T17:02:28,003 /tmp/pip-build-env-a0bnc9bn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.sr_assembly' is absent from the `packages` configuration. 2026-02-11T17:02:28,003 !! 2026-02-11T17:02:28,004 ******************************************************************************** 2026-02-11T17:02:28,004 ############################ 2026-02-11T17:02:28,005 # Package would be ignored # 2026-02-11T17:02:28,005 ############################ 2026-02-11T17:02:28,006 Python recognizes 'galaxy.tools.bundled.sr_assembly' as an importable package[^1], 2026-02-11T17:02:28,006 but it is absent from setuptools' `packages` configuration. 2026-02-11T17:02:28,007 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-11T17:02:28,007 package, please make sure that 'galaxy.tools.bundled.sr_assembly' is explicitly added 2026-02-11T17:02:28,008 to the `packages` configuration field. 2026-02-11T17:02:28,009 Alternatively, you can also rely on setuptools' discovery methods 2026-02-11T17:02:28,009 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-11T17:02:28,010 instead of `find_packages(...)`/`find:`). 2026-02-11T17:02:28,011 You can read more about "package discovery" on setuptools documentation page: 2026-02-11T17:02:28,012 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-11T17:02:28,013 If you don't want 'galaxy.tools.bundled.sr_assembly' to be distributed and are 2026-02-11T17:02:28,013 already explicitly excluding 'galaxy.tools.bundled.sr_assembly' via 2026-02-11T17:02:28,014 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-11T17:02:28,014 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-11T17:02:28,015 combination with a more fine grained `package-data` configuration. 2026-02-11T17:02:28,016 You can read more about "package data files" on setuptools documentation page: 2026-02-11T17:02:28,017 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-11T17:02:28,018 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-11T17:02:28,018 even if it does not contain any `.py` files. 2026-02-11T17:02:28,019 On the other hand, currently there is no concept of package data 2026-02-11T17:02:28,019 directory, all directories are treated like packages. 2026-02-11T17:02:28,020 ******************************************************************************** 2026-02-11T17:02:28,021 !! 2026-02-11T17:02:28,021 check.warn(importable) 2026-02-11T17:02:28,022 /tmp/pip-build-env-a0bnc9bn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.sr_mapping' is absent from the `packages` configuration. 2026-02-11T17:02:28,023 !! 2026-02-11T17:02:28,024 ******************************************************************************** 2026-02-11T17:02:28,024 ############################ 2026-02-11T17:02:28,025 # Package would be ignored # 2026-02-11T17:02:28,025 ############################ 2026-02-11T17:02:28,026 Python recognizes 'galaxy.tools.bundled.sr_mapping' as an importable package[^1], 2026-02-11T17:02:28,026 but it is absent from setuptools' `packages` configuration. 2026-02-11T17:02:28,027 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-11T17:02:28,027 package, please make sure that 'galaxy.tools.bundled.sr_mapping' is explicitly added 2026-02-11T17:02:28,028 to the `packages` configuration field. 2026-02-11T17:02:28,029 Alternatively, you can also rely on setuptools' discovery methods 2026-02-11T17:02:28,029 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-11T17:02:28,030 instead of `find_packages(...)`/`find:`). 2026-02-11T17:02:28,031 You can read more about "package discovery" on setuptools documentation page: 2026-02-11T17:02:28,031 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-11T17:02:28,032 If you don't want 'galaxy.tools.bundled.sr_mapping' to be distributed and are 2026-02-11T17:02:28,033 already explicitly excluding 'galaxy.tools.bundled.sr_mapping' via 2026-02-11T17:02:28,033 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-11T17:02:28,034 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-11T17:02:28,034 combination with a more fine grained `package-data` configuration. 2026-02-11T17:02:28,035 You can read more about "package data files" on setuptools documentation page: 2026-02-11T17:02:28,036 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-11T17:02:28,038 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-11T17:02:28,038 even if it does not contain any `.py` files. 2026-02-11T17:02:28,039 On the other hand, currently there is no concept of package data 2026-02-11T17:02:28,039 directory, all directories are treated like packages. 2026-02-11T17:02:28,039 ******************************************************************************** 2026-02-11T17:02:28,041 !! 2026-02-11T17:02:28,041 check.warn(importable) 2026-02-11T17:02:28,041 /tmp/pip-build-env-a0bnc9bn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.stats' is absent from the `packages` configuration. 2026-02-11T17:02:28,042 !! 2026-02-11T17:02:28,043 ******************************************************************************** 2026-02-11T17:02:28,043 ############################ 2026-02-11T17:02:28,044 # Package would be ignored # 2026-02-11T17:02:28,044 ############################ 2026-02-11T17:02:28,045 Python recognizes 'galaxy.tools.bundled.stats' as an importable package[^1], 2026-02-11T17:02:28,045 but it is absent from setuptools' `packages` configuration. 2026-02-11T17:02:28,046 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-11T17:02:28,047 package, please make sure that 'galaxy.tools.bundled.stats' is explicitly added 2026-02-11T17:02:28,047 to the `packages` configuration field. 2026-02-11T17:02:28,048 Alternatively, you can also rely on setuptools' discovery methods 2026-02-11T17:02:28,049 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-11T17:02:28,049 instead of `find_packages(...)`/`find:`). 2026-02-11T17:02:28,050 You can read more about "package discovery" on setuptools documentation page: 2026-02-11T17:02:28,051 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-11T17:02:28,052 If you don't want 'galaxy.tools.bundled.stats' to be distributed and are 2026-02-11T17:02:28,053 already explicitly excluding 'galaxy.tools.bundled.stats' via 2026-02-11T17:02:28,053 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-11T17:02:28,054 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-11T17:02:28,054 combination with a more fine grained `package-data` configuration. 2026-02-11T17:02:28,055 You can read more about "package data files" on setuptools documentation page: 2026-02-11T17:02:28,056 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-11T17:02:28,057 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-11T17:02:28,057 even if it does not contain any `.py` files. 2026-02-11T17:02:28,058 On the other hand, currently there is no concept of package data 2026-02-11T17:02:28,058 directory, all directories are treated like packages. 2026-02-11T17:02:28,059 ******************************************************************************** 2026-02-11T17:02:28,060 !! 2026-02-11T17:02:28,060 check.warn(importable) 2026-02-11T17:02:28,061 copying tool_shed_client/py.typed -> build/lib/tool_shed_client 2026-02-11T17:02:28,061 copying galaxy/py.typed -> build/lib/galaxy 2026-02-11T17:02:28,061 copying galaxy_ext/py.typed -> build/lib/galaxy_ext 2026-02-11T17:02:28,062 copying galaxy/managers/licenses.json -> build/lib/galaxy/managers 2026-02-11T17:02:28,062 copying galaxy/managers/markdown_export_base.css -> build/lib/galaxy/managers 2026-02-11T17:02:28,063 copying galaxy/carbon_emissions/carbon_intensity.csv -> build/lib/galaxy/carbon_emissions 2026-02-11T17:02:28,063 copying galaxy/dependencies/conditional-requirements.txt -> build/lib/galaxy/dependencies 2026-02-11T17:02:28,064 copying galaxy/dependencies/dev-requirements.txt -> build/lib/galaxy/dependencies 2026-02-11T17:02:28,064 copying galaxy/dependencies/lint-requirements.txt -> build/lib/galaxy/dependencies 2026-02-11T17:02:28,065 copying galaxy/dependencies/pinned-lint-requirements.txt -> build/lib/galaxy/dependencies 2026-02-11T17:02:28,065 copying galaxy/dependencies/pinned-requirements.txt -> build/lib/galaxy/dependencies 2026-02-11T17:02:28,065 copying galaxy/dependencies/pinned-test-requirements.txt -> build/lib/galaxy/dependencies 2026-02-11T17:02:28,066 copying galaxy/dependencies/pinned-typecheck-requirements.txt -> build/lib/galaxy/dependencies 2026-02-11T17:02:28,067 copying galaxy/dependencies/update.sh -> build/lib/galaxy/dependencies 2026-02-11T17:02:28,067 copying galaxy/dependencies/update_lint_requirements.sh -> build/lib/galaxy/dependencies 2026-02-11T17:02:28,068 copying galaxy/tools/apply_rules.xml -> build/lib/galaxy/tools 2026-02-11T17:02:28,068 copying galaxy/tools/build_list.xml -> build/lib/galaxy/tools 2026-02-11T17:02:28,069 copying galaxy/tools/build_list_1.2.0.xml -> build/lib/galaxy/tools 2026-02-11T17:02:28,070 copying galaxy/tools/convert_sample_sheet.xml -> build/lib/galaxy/tools 2026-02-11T17:02:28,070 copying galaxy/tools/cross_product_flat.xml -> build/lib/galaxy/tools 2026-02-11T17:02:28,071 copying galaxy/tools/cross_product_nested.xml -> build/lib/galaxy/tools 2026-02-11T17:02:28,071 copying galaxy/tools/data_fetch.xml -> build/lib/galaxy/tools 2026-02-11T17:02:28,072 copying galaxy/tools/duplicate_file_to_collection.xml -> build/lib/galaxy/tools 2026-02-11T17:02:28,073 copying galaxy/tools/extract_dataset.xml -> build/lib/galaxy/tools 2026-02-11T17:02:28,073 copying galaxy/tools/filter_empty_collection.xml -> build/lib/galaxy/tools 2026-02-11T17:02:28,074 copying galaxy/tools/filter_empty_collection_1.1.0.xml -> build/lib/galaxy/tools 2026-02-11T17:02:28,074 copying galaxy/tools/filter_failed_collection.xml -> build/lib/galaxy/tools 2026-02-11T17:02:28,075 copying galaxy/tools/filter_failed_collection_1.1.0.xml -> build/lib/galaxy/tools 2026-02-11T17:02:28,076 copying galaxy/tools/filter_from_file.xml -> build/lib/galaxy/tools 2026-02-11T17:02:28,076 copying galaxy/tools/filter_from_file_1.1.0.xml -> build/lib/galaxy/tools 2026-02-11T17:02:28,076 copying galaxy/tools/filter_null.xml -> build/lib/galaxy/tools 2026-02-11T17:02:28,077 copying galaxy/tools/filter_null_1.1.0.xml -> build/lib/galaxy/tools 2026-02-11T17:02:28,077 copying galaxy/tools/flatten_collection.xml -> build/lib/galaxy/tools 2026-02-11T17:02:28,078 copying galaxy/tools/harmonize_two_collections_list.xml -> build/lib/galaxy/tools 2026-02-11T17:02:28,078 copying galaxy/tools/keep_success_collection.xml -> build/lib/galaxy/tools 2026-02-11T17:02:28,079 copying galaxy/tools/keep_success_collection_1.1.0.xml -> build/lib/galaxy/tools 2026-02-11T17:02:28,079 copying galaxy/tools/merge_collection.xml -> build/lib/galaxy/tools 2026-02-11T17:02:28,079 copying galaxy/tools/model_operation_macros.xml -> build/lib/galaxy/tools 2026-02-11T17:02:28,080 copying galaxy/tools/nest_collection.xml -> build/lib/galaxy/tools 2026-02-11T17:02:28,080 copying galaxy/tools/relabel_from_file.xml -> build/lib/galaxy/tools 2026-02-11T17:02:28,081 copying galaxy/tools/sample_sheet_to_tabular.xml -> build/lib/galaxy/tools 2026-02-11T17:02:28,081 copying galaxy/tools/sort_collection_list.xml -> build/lib/galaxy/tools 2026-02-11T17:02:28,082 copying galaxy/tools/split_paired_and_unpaired.xml -> build/lib/galaxy/tools 2026-02-11T17:02:28,082 copying galaxy/tools/tag_collection_from_file.xml -> build/lib/galaxy/tools 2026-02-11T17:02:28,082 copying galaxy/tools/unzip_collection.xml -> build/lib/galaxy/tools 2026-02-11T17:02:28,083 copying galaxy/tools/zip_collection.xml -> build/lib/galaxy/tools 2026-02-11T17:02:28,083 creating build/lib/galaxy/tools/bundled 2026-02-11T17:02:28,084 copying galaxy/tools/bundled/__init__.py -> build/lib/galaxy/tools/bundled 2026-02-11T17:02:28,084 creating build/lib/galaxy/tools/bundled/data_export 2026-02-11T17:02:28,085 copying galaxy/tools/bundled/data_export/export_remote.py -> build/lib/galaxy/tools/bundled/data_export 2026-02-11T17:02:28,085 copying galaxy/tools/bundled/data_export/export_remote.xml -> build/lib/galaxy/tools/bundled/data_export 2026-02-11T17:02:28,086 creating build/lib/galaxy/tools/bundled/data_source 2026-02-11T17:02:28,086 copying galaxy/tools/bundled/data_source/__init__.py -> build/lib/galaxy/tools/bundled/data_source 2026-02-11T17:02:28,087 copying galaxy/tools/bundled/data_source/access_libraries.xml -> build/lib/galaxy/tools/bundled/data_source 2026-02-11T17:02:28,087 copying galaxy/tools/bundled/data_source/biomart.xml -> build/lib/galaxy/tools/bundled/data_source 2026-02-11T17:02:28,088 copying galaxy/tools/bundled/data_source/biomart_test.xml -> build/lib/galaxy/tools/bundled/data_source 2026-02-11T17:02:28,088 copying galaxy/tools/bundled/data_source/cbi_rice_mart.xml -> build/lib/galaxy/tools/bundled/data_source 2026-02-11T17:02:28,089 copying galaxy/tools/bundled/data_source/data_source.py -> build/lib/galaxy/tools/bundled/data_source 2026-02-11T17:02:28,089 copying galaxy/tools/bundled/data_source/diced.xml -> build/lib/galaxy/tools/bundled/data_source 2026-02-11T17:02:28,090 copying galaxy/tools/bundled/data_source/ebi_sra.xml -> build/lib/galaxy/tools/bundled/data_source 2026-02-11T17:02:28,090 copying galaxy/tools/bundled/data_source/eupathdb.xml -> build/lib/galaxy/tools/bundled/data_source 2026-02-11T17:02:28,091 copying galaxy/tools/bundled/data_source/fly_modencode.xml -> build/lib/galaxy/tools/bundled/data_source 2026-02-11T17:02:28,091 copying galaxy/tools/bundled/data_source/flymine.xml -> build/lib/galaxy/tools/bundled/data_source 2026-02-11T17:02:28,092 copying galaxy/tools/bundled/data_source/flymine_test.xml -> build/lib/galaxy/tools/bundled/data_source 2026-02-11T17:02:28,092 copying galaxy/tools/bundled/data_source/genbank.py -> build/lib/galaxy/tools/bundled/data_source 2026-02-11T17:02:28,093 copying galaxy/tools/bundled/data_source/genbank.xml -> build/lib/galaxy/tools/bundled/data_source 2026-02-11T17:02:28,093 copying galaxy/tools/bundled/data_source/gramene_mart.xml -> build/lib/galaxy/tools/bundled/data_source 2026-02-11T17:02:28,094 copying galaxy/tools/bundled/data_source/hapmapmart.xml -> build/lib/galaxy/tools/bundled/data_source 2026-02-11T17:02:28,094 copying galaxy/tools/bundled/data_source/hbvar.xml -> build/lib/galaxy/tools/bundled/data_source 2026-02-11T17:02:28,095 copying galaxy/tools/bundled/data_source/import.py -> build/lib/galaxy/tools/bundled/data_source 2026-02-11T17:02:28,095 copying galaxy/tools/bundled/data_source/import.xml -> build/lib/galaxy/tools/bundled/data_source 2026-02-11T17:02:28,095 copying galaxy/tools/bundled/data_source/intermine.xml -> build/lib/galaxy/tools/bundled/data_source 2026-02-11T17:02:28,096 copying galaxy/tools/bundled/data_source/metabolicmine.xml -> build/lib/galaxy/tools/bundled/data_source 2026-02-11T17:02:28,096 copying galaxy/tools/bundled/data_source/microbial_import.py -> build/lib/galaxy/tools/bundled/data_source 2026-02-11T17:02:28,097 copying galaxy/tools/bundled/data_source/microbial_import.xml -> build/lib/galaxy/tools/bundled/data_source 2026-02-11T17:02:28,097 copying galaxy/tools/bundled/data_source/microbial_import_code.py -> build/lib/galaxy/tools/bundled/data_source 2026-02-11T17:02:28,098 copying galaxy/tools/bundled/data_source/modmine.xml -> build/lib/galaxy/tools/bundled/data_source 2026-02-11T17:02:28,098 copying galaxy/tools/bundled/data_source/mousemine.xml -> build/lib/galaxy/tools/bundled/data_source 2026-02-11T17:02:28,099 copying galaxy/tools/bundled/data_source/ncbi_datasets.xml -> build/lib/galaxy/tools/bundled/data_source 2026-02-11T17:02:28,099 copying galaxy/tools/bundled/data_source/ratmine.xml -> build/lib/galaxy/tools/bundled/data_source 2026-02-11T17:02:28,100 copying galaxy/tools/bundled/data_source/sra.xml -> build/lib/galaxy/tools/bundled/data_source 2026-02-11T17:02:28,100 copying galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml -> build/lib/galaxy/tools/bundled/data_source 2026-02-11T17:02:28,101 copying galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml -> build/lib/galaxy/tools/bundled/data_source 2026-02-11T17:02:28,101 copying galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml -> build/lib/galaxy/tools/bundled/data_source 2026-02-11T17:02:28,101 copying galaxy/tools/bundled/data_source/upload.py -> build/lib/galaxy/tools/bundled/data_source 2026-02-11T17:02:28,102 copying galaxy/tools/bundled/data_source/upload.xml -> build/lib/galaxy/tools/bundled/data_source 2026-02-11T17:02:28,102 copying galaxy/tools/bundled/data_source/worm_modencode.xml -> build/lib/galaxy/tools/bundled/data_source 2026-02-11T17:02:28,103 copying galaxy/tools/bundled/data_source/wormbase.xml -> build/lib/galaxy/tools/bundled/data_source 2026-02-11T17:02:28,103 copying galaxy/tools/bundled/data_source/wormbase_test.xml -> build/lib/galaxy/tools/bundled/data_source 2026-02-11T17:02:28,104 copying galaxy/tools/bundled/data_source/yeastmine.xml -> build/lib/galaxy/tools/bundled/data_source 2026-02-11T17:02:28,104 copying galaxy/tools/bundled/data_source/zebrafishmine.xml -> build/lib/galaxy/tools/bundled/data_source 2026-02-11T17:02:28,105 creating build/lib/galaxy/tools/bundled/expression_tools 2026-02-11T17:02:28,105 copying galaxy/tools/bundled/expression_tools/expression_macros.xml -> build/lib/galaxy/tools/bundled/expression_tools 2026-02-11T17:02:28,106 copying galaxy/tools/bundled/expression_tools/parse_values_from_file.xml -> build/lib/galaxy/tools/bundled/expression_tools 2026-02-11T17:02:28,107 copying galaxy/tools/bundled/expression_tools/pick_value.xml -> build/lib/galaxy/tools/bundled/expression_tools 2026-02-11T17:02:28,107 creating build/lib/galaxy/tools/bundled/extract 2026-02-11T17:02:28,108 copying galaxy/tools/bundled/extract/__init__.py -> build/lib/galaxy/tools/bundled/extract 2026-02-11T17:02:28,108 copying galaxy/tools/bundled/extract/extract_genomic_dna.py -> build/lib/galaxy/tools/bundled/extract 2026-02-11T17:02:28,109 copying galaxy/tools/bundled/extract/extract_genomic_dna.xml -> build/lib/galaxy/tools/bundled/extract 2026-02-11T17:02:28,109 copying galaxy/tools/bundled/extract/liftOver_wrapper.py -> build/lib/galaxy/tools/bundled/extract 2026-02-11T17:02:28,110 copying galaxy/tools/bundled/extract/liftOver_wrapper.xml -> build/lib/galaxy/tools/bundled/extract 2026-02-11T17:02:28,110 creating build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,110 copying galaxy/tools/bundled/filters/CreateInterval.pl -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,111 copying galaxy/tools/bundled/filters/CreateInterval.xml -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,111 copying galaxy/tools/bundled/filters/__init__.py -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,112 copying galaxy/tools/bundled/filters/axt_to_concat_fasta.py -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,112 copying galaxy/tools/bundled/filters/axt_to_concat_fasta.xml -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,112 copying galaxy/tools/bundled/filters/axt_to_fasta.py -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,113 copying galaxy/tools/bundled/filters/axt_to_fasta.xml -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,113 copying galaxy/tools/bundled/filters/axt_to_lav.py -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,114 copying galaxy/tools/bundled/filters/axt_to_lav.xml -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,114 copying galaxy/tools/bundled/filters/axt_to_lav_code.py -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,114 copying galaxy/tools/bundled/filters/bed2gff.xml -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,115 copying galaxy/tools/bundled/filters/bed_to_bigbed.xml -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,115 copying galaxy/tools/bundled/filters/bed_to_gff_converter.py -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,116 copying galaxy/tools/bundled/filters/catWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,116 copying galaxy/tools/bundled/filters/changeCase.pl -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,117 copying galaxy/tools/bundled/filters/changeCase.xml -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,117 copying galaxy/tools/bundled/filters/commWrapper.pl -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,118 copying galaxy/tools/bundled/filters/commWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,118 copying galaxy/tools/bundled/filters/compare.xml -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,119 copying galaxy/tools/bundled/filters/condense_characters.pl -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,119 copying galaxy/tools/bundled/filters/condense_characters.xml -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,120 copying galaxy/tools/bundled/filters/convert_characters.py -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,120 copying galaxy/tools/bundled/filters/convert_characters.xml -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,121 copying galaxy/tools/bundled/filters/cutWrapper.pl -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,121 copying galaxy/tools/bundled/filters/cutWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,122 copying galaxy/tools/bundled/filters/fileGrep.xml -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,122 copying galaxy/tools/bundled/filters/fixedValueColumn.pl -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,123 copying galaxy/tools/bundled/filters/fixedValueColumn.xml -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,123 copying galaxy/tools/bundled/filters/gff2bed.xml -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,124 copying galaxy/tools/bundled/filters/gff_to_bed_converter.py -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,124 copying galaxy/tools/bundled/filters/grep.xml -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,126 copying galaxy/tools/bundled/filters/grep_1.0.1.xml -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,128 copying galaxy/tools/bundled/filters/gtf2bedgraph.xml -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,130 copying galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,133 copying galaxy/tools/bundled/filters/headWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,135 copying galaxy/tools/bundled/filters/join.py -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,138 copying galaxy/tools/bundled/filters/joiner.xml -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,141 copying galaxy/tools/bundled/filters/joiner2.xml -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,143 copying galaxy/tools/bundled/filters/lav_to_bed.py -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,145 copying galaxy/tools/bundled/filters/lav_to_bed.xml -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,147 copying galaxy/tools/bundled/filters/lav_to_bed_code.py -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,149 copying galaxy/tools/bundled/filters/mergeCols.py -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,151 copying galaxy/tools/bundled/filters/mergeCols.xml -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,154 copying galaxy/tools/bundled/filters/pasteWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,156 copying galaxy/tools/bundled/filters/random_lines_two_pass.py -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,159 copying galaxy/tools/bundled/filters/randomlines.py -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,161 copying galaxy/tools/bundled/filters/randomlines.xml -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,163 copying galaxy/tools/bundled/filters/remove_beginning.xml -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,165 copying galaxy/tools/bundled/filters/secure_hash_message_digest.py -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,168 copying galaxy/tools/bundled/filters/secure_hash_message_digest.xml -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,170 copying galaxy/tools/bundled/filters/sff_extract.py -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,173 copying galaxy/tools/bundled/filters/sff_extractor.xml -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,176 copying galaxy/tools/bundled/filters/sorter.xml -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,179 copying galaxy/tools/bundled/filters/tailWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,182 copying galaxy/tools/bundled/filters/trimmer.py -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,185 copying galaxy/tools/bundled/filters/trimmer.xml -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,188 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,191 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.xml -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,194 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.py -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,197 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.xml -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,200 copying galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,204 copying galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.xml -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,206 copying galaxy/tools/bundled/filters/uniq.py -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,209 copying galaxy/tools/bundled/filters/uniq.xml -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,212 copying galaxy/tools/bundled/filters/wc_gnu.xml -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,215 copying galaxy/tools/bundled/filters/wig_to_bigwig.xml -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,217 copying galaxy/tools/bundled/filters/wiggle_to_simple.py -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,220 copying galaxy/tools/bundled/filters/wiggle_to_simple.xml -> build/lib/galaxy/tools/bundled/filters 2026-02-11T17:02:28,223 creating build/lib/galaxy/tools/bundled/filters/gff 2026-02-11T17:02:28,224 copying galaxy/tools/bundled/filters/gff/__init__.py -> build/lib/galaxy/tools/bundled/filters/gff 2026-02-11T17:02:28,226 copying galaxy/tools/bundled/filters/gff/extract_GFF_Features.py -> build/lib/galaxy/tools/bundled/filters/gff 2026-02-11T17:02:28,229 copying galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml -> build/lib/galaxy/tools/bundled/filters/gff 2026-02-11T17:02:28,232 copying galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py -> build/lib/galaxy/tools/bundled/filters/gff 2026-02-11T17:02:28,235 copying galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml -> build/lib/galaxy/tools/bundled/filters/gff 2026-02-11T17:02:28,238 copying galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py -> build/lib/galaxy/tools/bundled/filters/gff 2026-02-11T17:02:28,241 copying galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml -> build/lib/galaxy/tools/bundled/filters/gff 2026-02-11T17:02:28,243 copying galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py -> build/lib/galaxy/tools/bundled/filters/gff 2026-02-11T17:02:28,246 copying galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml -> build/lib/galaxy/tools/bundled/filters/gff 2026-02-11T17:02:28,249 creating build/lib/galaxy/tools/bundled/interactive 2026-02-11T17:02:28,250 copying galaxy/tools/bundled/interactive/Rprofile.R -> build/lib/galaxy/tools/bundled/interactive 2026-02-11T17:02:28,253 copying galaxy/tools/bundled/interactive/default_notebook.ipynb -> build/lib/galaxy/tools/bundled/interactive 2026-02-11T17:02:28,255 copying galaxy/tools/bundled/interactive/interactivetool_askomics.xml -> build/lib/galaxy/tools/bundled/interactive 2026-02-11T17:02:28,258 copying galaxy/tools/bundled/interactive/interactivetool_bam_iobio.xml -> build/lib/galaxy/tools/bundled/interactive 2026-02-11T17:02:28,261 copying galaxy/tools/bundled/interactive/interactivetool_blobtoolkit.xml -> build/lib/galaxy/tools/bundled/interactive 2026-02-11T17:02:28,264 copying galaxy/tools/bundled/interactive/interactivetool_cellxgene_0.16.2.xml -> build/lib/galaxy/tools/bundled/interactive 2026-02-11T17:02:28,267 copying galaxy/tools/bundled/interactive/interactivetool_cellxgene_1.1.1.xml -> build/lib/galaxy/tools/bundled/interactive 2026-02-11T17:02:28,270 copying galaxy/tools/bundled/interactive/interactivetool_climate_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2026-02-11T17:02:28,273 copying galaxy/tools/bundled/interactive/interactivetool_ethercalc.xml -> build/lib/galaxy/tools/bundled/interactive 2026-02-11T17:02:28,276 copying galaxy/tools/bundled/interactive/interactivetool_geoexplorer.xml -> build/lib/galaxy/tools/bundled/interactive 2026-02-11T17:02:28,278 copying galaxy/tools/bundled/interactive/interactivetool_guacamole_desktop.xml -> build/lib/galaxy/tools/bundled/interactive 2026-02-11T17:02:28,281 copying galaxy/tools/bundled/interactive/interactivetool_hicbrowser.xml -> build/lib/galaxy/tools/bundled/interactive 2026-02-11T17:02:28,283 copying galaxy/tools/bundled/interactive/interactivetool_higlass.xml -> build/lib/galaxy/tools/bundled/interactive 2026-02-11T17:02:28,286 copying galaxy/tools/bundled/interactive/interactivetool_ilastik.xml -> build/lib/galaxy/tools/bundled/interactive 2026-02-11T17:02:28,288 copying galaxy/tools/bundled/interactive/interactivetool_isee.xml -> build/lib/galaxy/tools/bundled/interactive 2026-02-11T17:02:28,290 copying galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2026-02-11T17:02:28,293 copying galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.0.xml -> build/lib/galaxy/tools/bundled/interactive 2026-02-11T17:02:28,296 copying galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.1.xml -> build/lib/galaxy/tools/bundled/interactive 2026-02-11T17:02:28,299 copying galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.3.xml -> build/lib/galaxy/tools/bundled/interactive 2026-02-11T17:02:28,301 copying galaxy/tools/bundled/interactive/interactivetool_metashark.xml -> build/lib/galaxy/tools/bundled/interactive 2026-02-11T17:02:28,304 copying galaxy/tools/bundled/interactive/interactivetool_mgnify_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2026-02-11T17:02:28,306 copying galaxy/tools/bundled/interactive/interactivetool_ml_jupyter_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2026-02-11T17:02:28,309 copying galaxy/tools/bundled/interactive/interactivetool_neo4j.xml -> build/lib/galaxy/tools/bundled/interactive 2026-02-11T17:02:28,311 copying galaxy/tools/bundled/interactive/interactivetool_openrefine.xml -> build/lib/galaxy/tools/bundled/interactive 2026-02-11T17:02:28,313 copying galaxy/tools/bundled/interactive/interactivetool_pangeo_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2026-02-11T17:02:28,316 copying galaxy/tools/bundled/interactive/interactivetool_panoply.xml -> build/lib/galaxy/tools/bundled/interactive 2026-02-11T17:02:28,319 copying galaxy/tools/bundled/interactive/interactivetool_paraview.xml -> build/lib/galaxy/tools/bundled/interactive 2026-02-11T17:02:28,321 copying galaxy/tools/bundled/interactive/interactivetool_pavian.xml -> build/lib/galaxy/tools/bundled/interactive 2026-02-11T17:02:28,323 copying galaxy/tools/bundled/interactive/interactivetool_phinch.xml -> build/lib/galaxy/tools/bundled/interactive 2026-02-11T17:02:28,325 copying galaxy/tools/bundled/interactive/interactivetool_pyiron.xml -> build/lib/galaxy/tools/bundled/interactive 2026-02-11T17:02:28,328 copying galaxy/tools/bundled/interactive/interactivetool_qiskit_jupyter_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2026-02-11T17:02:28,331 copying galaxy/tools/bundled/interactive/interactivetool_radiant.xml -> build/lib/galaxy/tools/bundled/interactive 2026-02-11T17:02:28,333 copying galaxy/tools/bundled/interactive/interactivetool_rstudio.xml -> build/lib/galaxy/tools/bundled/interactive 2026-02-11T17:02:28,335 copying galaxy/tools/bundled/interactive/interactivetool_rstudio_bioc_3.20.xml -> build/lib/galaxy/tools/bundled/interactive 2026-02-11T17:02:28,338 copying galaxy/tools/bundled/interactive/interactivetool_simtext_app.xml -> build/lib/galaxy/tools/bundled/interactive 2026-02-11T17:02:28,340 copying galaxy/tools/bundled/interactive/interactivetool_vcf_iobio.xml -> build/lib/galaxy/tools/bundled/interactive 2026-02-11T17:02:28,342 copying galaxy/tools/bundled/interactive/interactivetool_vrm_editor.xml -> build/lib/galaxy/tools/bundled/interactive 2026-02-11T17:02:28,344 copying galaxy/tools/bundled/interactive/interactivetool_wallace.xml -> build/lib/galaxy/tools/bundled/interactive 2026-02-11T17:02:28,346 copying galaxy/tools/bundled/interactive/interactivetool_wilson.xml -> build/lib/galaxy/tools/bundled/interactive 2026-02-11T17:02:28,349 copying galaxy/tools/bundled/interactive/simtext_app.R -> build/lib/galaxy/tools/bundled/interactive 2026-02-11T17:02:28,352 creating build/lib/galaxy/tools/bundled/maf 2026-02-11T17:02:28,353 copying galaxy/tools/bundled/maf/__init__.py -> build/lib/galaxy/tools/bundled/maf 2026-02-11T17:02:28,355 copying galaxy/tools/bundled/maf/genebed_maf_to_fasta.xml -> build/lib/galaxy/tools/bundled/maf 2026-02-11T17:02:28,358 copying galaxy/tools/bundled/maf/interval2maf.py -> build/lib/galaxy/tools/bundled/maf 2026-02-11T17:02:28,361 copying galaxy/tools/bundled/maf/interval2maf.xml -> build/lib/galaxy/tools/bundled/maf 2026-02-11T17:02:28,363 copying galaxy/tools/bundled/maf/interval2maf_pairwise.xml -> build/lib/galaxy/tools/bundled/maf 2026-02-11T17:02:28,366 copying galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.py -> build/lib/galaxy/tools/bundled/maf 2026-02-11T17:02:28,368 copying galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.xml -> build/lib/galaxy/tools/bundled/maf 2026-02-11T17:02:28,370 copying galaxy/tools/bundled/maf/macros.xml -> build/lib/galaxy/tools/bundled/maf 2026-02-11T17:02:28,372 copying galaxy/tools/bundled/maf/maf_by_block_number.py -> build/lib/galaxy/tools/bundled/maf 2026-02-11T17:02:28,375 copying galaxy/tools/bundled/maf/maf_by_block_number.xml -> build/lib/galaxy/tools/bundled/maf 2026-02-11T17:02:28,377 copying galaxy/tools/bundled/maf/maf_filter.py -> build/lib/galaxy/tools/bundled/maf 2026-02-11T17:02:28,379 copying galaxy/tools/bundled/maf/maf_filter.xml -> build/lib/galaxy/tools/bundled/maf 2026-02-11T17:02:28,383 copying galaxy/tools/bundled/maf/maf_limit_size.py -> build/lib/galaxy/tools/bundled/maf 2026-02-11T17:02:28,385 copying galaxy/tools/bundled/maf/maf_limit_size.xml -> build/lib/galaxy/tools/bundled/maf 2026-02-11T17:02:28,388 copying galaxy/tools/bundled/maf/maf_limit_to_species.py -> build/lib/galaxy/tools/bundled/maf 2026-02-11T17:02:28,390 copying galaxy/tools/bundled/maf/maf_limit_to_species.xml -> build/lib/galaxy/tools/bundled/maf 2026-02-11T17:02:28,392 copying galaxy/tools/bundled/maf/maf_reverse_complement.py -> build/lib/galaxy/tools/bundled/maf 2026-02-11T17:02:28,394 copying galaxy/tools/bundled/maf/maf_reverse_complement.xml -> build/lib/galaxy/tools/bundled/maf 2026-02-11T17:02:28,397 copying galaxy/tools/bundled/maf/maf_split_by_species.py -> build/lib/galaxy/tools/bundled/maf 2026-02-11T17:02:28,399 copying galaxy/tools/bundled/maf/maf_split_by_species.xml -> build/lib/galaxy/tools/bundled/maf 2026-02-11T17:02:28,402 copying galaxy/tools/bundled/maf/maf_stats.py -> build/lib/galaxy/tools/bundled/maf 2026-02-11T17:02:28,404 copying galaxy/tools/bundled/maf/maf_stats.xml -> build/lib/galaxy/tools/bundled/maf 2026-02-11T17:02:28,407 copying galaxy/tools/bundled/maf/maf_thread_for_species.py -> build/lib/galaxy/tools/bundled/maf 2026-02-11T17:02:28,409 copying galaxy/tools/bundled/maf/maf_thread_for_species.xml -> build/lib/galaxy/tools/bundled/maf 2026-02-11T17:02:28,411 copying galaxy/tools/bundled/maf/maf_to_bed.py -> build/lib/galaxy/tools/bundled/maf 2026-02-11T17:02:28,414 copying galaxy/tools/bundled/maf/maf_to_bed.xml -> build/lib/galaxy/tools/bundled/maf 2026-02-11T17:02:28,416 copying galaxy/tools/bundled/maf/maf_to_bed_code.py -> build/lib/galaxy/tools/bundled/maf 2026-02-11T17:02:28,419 copying galaxy/tools/bundled/maf/maf_to_fasta.xml -> build/lib/galaxy/tools/bundled/maf 2026-02-11T17:02:28,421 copying galaxy/tools/bundled/maf/maf_to_fasta_concat.py -> build/lib/galaxy/tools/bundled/maf 2026-02-11T17:02:28,424 copying galaxy/tools/bundled/maf/maf_to_fasta_multiple_sets.py -> build/lib/galaxy/tools/bundled/maf 2026-02-11T17:02:28,426 copying galaxy/tools/bundled/maf/maf_to_interval.py -> build/lib/galaxy/tools/bundled/maf 2026-02-11T17:02:28,429 copying galaxy/tools/bundled/maf/maf_to_interval.xml -> build/lib/galaxy/tools/bundled/maf 2026-02-11T17:02:28,432 copying galaxy/tools/bundled/maf/vcf_to_maf_customtrack.py -> build/lib/galaxy/tools/bundled/maf 2026-02-11T17:02:28,434 copying galaxy/tools/bundled/maf/vcf_to_maf_customtrack.xml -> build/lib/galaxy/tools/bundled/maf 2026-02-11T17:02:28,437 creating build/lib/galaxy/tools/bundled/meme 2026-02-11T17:02:28,438 copying galaxy/tools/bundled/meme/meme.xml -> build/lib/galaxy/tools/bundled/meme 2026-02-11T17:02:28,441 creating build/lib/galaxy/tools/bundled/metag_tools 2026-02-11T17:02:28,442 copying galaxy/tools/bundled/metag_tools/__init__.py -> build/lib/galaxy/tools/bundled/metag_tools 2026-02-11T17:02:28,445 copying galaxy/tools/bundled/metag_tools/blat_wrapper.py -> build/lib/galaxy/tools/bundled/metag_tools 2026-02-11T17:02:28,447 copying galaxy/tools/bundled/metag_tools/blat_wrapper.xml -> build/lib/galaxy/tools/bundled/metag_tools 2026-02-11T17:02:28,449 copying galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.py -> build/lib/galaxy/tools/bundled/metag_tools 2026-02-11T17:02:28,451 copying galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.xml -> build/lib/galaxy/tools/bundled/metag_tools 2026-02-11T17:02:28,454 copying galaxy/tools/bundled/metag_tools/shrimp_wrapper.py -> build/lib/galaxy/tools/bundled/metag_tools 2026-02-11T17:02:28,457 copying galaxy/tools/bundled/metag_tools/shrimp_wrapper.xml -> build/lib/galaxy/tools/bundled/metag_tools 2026-02-11T17:02:28,460 creating build/lib/galaxy/tools/bundled/next_gen_conversion 2026-02-11T17:02:28,461 copying galaxy/tools/bundled/next_gen_conversion/bwa_solid2fastq_modified.pl -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-02-11T17:02:28,464 copying galaxy/tools/bundled/next_gen_conversion/fastq_conversions.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-02-11T17:02:28,466 copying galaxy/tools/bundled/next_gen_conversion/fastq_conversions.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-02-11T17:02:28,469 copying galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-02-11T17:02:28,472 copying galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-02-11T17:02:28,474 copying galaxy/tools/bundled/next_gen_conversion/solid2fastq.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-02-11T17:02:28,477 copying galaxy/tools/bundled/next_gen_conversion/solid2fastq.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-02-11T17:02:28,480 copying galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-02-11T17:02:28,482 copying galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-02-11T17:02:28,484 creating build/lib/galaxy/tools/bundled/ngs_simulation 2026-02-11T17:02:28,485 copying galaxy/tools/bundled/ngs_simulation/__init__.py -> build/lib/galaxy/tools/bundled/ngs_simulation 2026-02-11T17:02:28,487 copying galaxy/tools/bundled/ngs_simulation/ngs_simulation.py -> build/lib/galaxy/tools/bundled/ngs_simulation 2026-02-11T17:02:28,490 copying galaxy/tools/bundled/ngs_simulation/ngs_simulation.xml -> build/lib/galaxy/tools/bundled/ngs_simulation 2026-02-11T17:02:28,493 creating build/lib/galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:28,494 copying galaxy/tools/bundled/phenotype_association/BEAM2_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:28,496 copying galaxy/tools/bundled/phenotype_association/__init__.py -> build/lib/galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:28,498 copying galaxy/tools/bundled/phenotype_association/beam.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:28,501 copying galaxy/tools/bundled/phenotype_association/gpass.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:28,503 copying galaxy/tools/bundled/phenotype_association/gpass.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:28,506 copying galaxy/tools/bundled/phenotype_association/ldtools.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:28,508 copying galaxy/tools/bundled/phenotype_association/ldtools_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:28,510 copying galaxy/tools/bundled/phenotype_association/linkToDavid.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:28,513 copying galaxy/tools/bundled/phenotype_association/linkToDavid.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:28,516 copying galaxy/tools/bundled/phenotype_association/linkToGProfile.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:28,518 copying galaxy/tools/bundled/phenotype_association/linkToGProfile.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:28,520 copying galaxy/tools/bundled/phenotype_association/lped_to_geno.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:28,522 copying galaxy/tools/bundled/phenotype_association/lps.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:28,525 copying galaxy/tools/bundled/phenotype_association/lps_tool_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:28,527 copying galaxy/tools/bundled/phenotype_association/master2gd_snp.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:28,530 copying galaxy/tools/bundled/phenotype_association/master2gd_snp.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:28,532 copying galaxy/tools/bundled/phenotype_association/master2pg.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:28,535 copying galaxy/tools/bundled/phenotype_association/master2pg.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:28,537 copying galaxy/tools/bundled/phenotype_association/mergeSnps.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:28,539 copying galaxy/tools/bundled/phenotype_association/pagetag.py -> build/lib/galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:28,542 copying galaxy/tools/bundled/phenotype_association/pass.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:28,545 copying galaxy/tools/bundled/phenotype_association/pass_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:28,547 copying galaxy/tools/bundled/phenotype_association/senatag.py -> build/lib/galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:28,550 copying galaxy/tools/bundled/phenotype_association/sift.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:28,552 copying galaxy/tools/bundled/phenotype_association/sift_variants_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:28,555 creating build/lib/galaxy/tools/bundled/plotting 2026-02-11T17:02:28,556 copying galaxy/tools/bundled/plotting/bar_chart.py -> build/lib/galaxy/tools/bundled/plotting 2026-02-11T17:02:28,559 copying galaxy/tools/bundled/plotting/bar_chart.xml -> build/lib/galaxy/tools/bundled/plotting 2026-02-11T17:02:28,561 copying galaxy/tools/bundled/plotting/boxplot.xml -> build/lib/galaxy/tools/bundled/plotting 2026-02-11T17:02:28,564 creating build/lib/galaxy/tools/bundled/solid_tools 2026-02-11T17:02:28,565 copying galaxy/tools/bundled/solid_tools/__init__.py -> build/lib/galaxy/tools/bundled/solid_tools 2026-02-11T17:02:28,567 copying galaxy/tools/bundled/solid_tools/maq_cs_wrapper.py -> build/lib/galaxy/tools/bundled/solid_tools 2026-02-11T17:02:28,569 copying galaxy/tools/bundled/solid_tools/maq_cs_wrapper.xml -> build/lib/galaxy/tools/bundled/solid_tools 2026-02-11T17:02:28,572 copying galaxy/tools/bundled/solid_tools/maq_cs_wrapper_code.py -> build/lib/galaxy/tools/bundled/solid_tools 2026-02-11T17:02:28,574 copying galaxy/tools/bundled/solid_tools/qualsolid_boxplot_graph.sh -> build/lib/galaxy/tools/bundled/solid_tools 2026-02-11T17:02:28,576 copying galaxy/tools/bundled/solid_tools/solid_qual_boxplot.xml -> build/lib/galaxy/tools/bundled/solid_tools 2026-02-11T17:02:28,579 copying galaxy/tools/bundled/solid_tools/solid_qual_stats.py -> build/lib/galaxy/tools/bundled/solid_tools 2026-02-11T17:02:28,581 copying galaxy/tools/bundled/solid_tools/solid_qual_stats.xml -> build/lib/galaxy/tools/bundled/solid_tools 2026-02-11T17:02:28,584 creating build/lib/galaxy/tools/bundled/sr_assembly 2026-02-11T17:02:28,585 copying galaxy/tools/bundled/sr_assembly/__init__.py -> build/lib/galaxy/tools/bundled/sr_assembly 2026-02-11T17:02:28,587 copying galaxy/tools/bundled/sr_assembly/velvetg.xml -> build/lib/galaxy/tools/bundled/sr_assembly 2026-02-11T17:02:28,590 copying galaxy/tools/bundled/sr_assembly/velvetg_wrapper.py -> build/lib/galaxy/tools/bundled/sr_assembly 2026-02-11T17:02:28,592 copying galaxy/tools/bundled/sr_assembly/velveth.xml -> build/lib/galaxy/tools/bundled/sr_assembly 2026-02-11T17:02:28,594 copying galaxy/tools/bundled/sr_assembly/velveth_wrapper.py -> build/lib/galaxy/tools/bundled/sr_assembly 2026-02-11T17:02:28,596 creating build/lib/galaxy/tools/bundled/sr_mapping 2026-02-11T17:02:28,597 copying galaxy/tools/bundled/sr_mapping/PerM.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2026-02-11T17:02:28,600 copying galaxy/tools/bundled/sr_mapping/__init__.py -> build/lib/galaxy/tools/bundled/sr_mapping 2026-02-11T17:02:28,602 copying galaxy/tools/bundled/sr_mapping/bfast_wrapper.py -> build/lib/galaxy/tools/bundled/sr_mapping 2026-02-11T17:02:28,605 copying galaxy/tools/bundled/sr_mapping/bfast_wrapper.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2026-02-11T17:02:28,608 copying galaxy/tools/bundled/sr_mapping/fastq_statistics.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2026-02-11T17:02:28,611 copying galaxy/tools/bundled/sr_mapping/mosaik.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2026-02-11T17:02:28,613 copying galaxy/tools/bundled/sr_mapping/srma_wrapper.py -> build/lib/galaxy/tools/bundled/sr_mapping 2026-02-11T17:02:28,616 copying galaxy/tools/bundled/sr_mapping/srma_wrapper.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2026-02-11T17:02:28,619 creating build/lib/galaxy/tools/bundled/stats 2026-02-11T17:02:28,620 copying galaxy/tools/bundled/stats/__init__.py -> build/lib/galaxy/tools/bundled/stats 2026-02-11T17:02:28,622 copying galaxy/tools/bundled/stats/aggregate_binned_scores_in_intervals.xml -> build/lib/galaxy/tools/bundled/stats 2026-02-11T17:02:28,624 copying galaxy/tools/bundled/stats/aggregate_scores_in_intervals.py -> build/lib/galaxy/tools/bundled/stats 2026-02-11T17:02:28,627 copying galaxy/tools/bundled/stats/filtering.py -> build/lib/galaxy/tools/bundled/stats 2026-02-11T17:02:28,630 copying galaxy/tools/bundled/stats/filtering.xml -> build/lib/galaxy/tools/bundled/stats 2026-02-11T17:02:28,633 copying galaxy/tools/bundled/stats/filtering_1_1_0.xml -> build/lib/galaxy/tools/bundled/stats 2026-02-11T17:02:28,635 copying galaxy/tools/bundled/stats/grouping.py -> build/lib/galaxy/tools/bundled/stats 2026-02-11T17:02:28,638 copying galaxy/tools/bundled/stats/grouping.xml -> build/lib/galaxy/tools/bundled/stats 2026-02-11T17:02:28,641 copying galaxy/tools/bundled/stats/gsummary.py -> build/lib/galaxy/tools/bundled/stats 2026-02-11T17:02:28,644 copying galaxy/tools/bundled/stats/gsummary.xml -> build/lib/galaxy/tools/bundled/stats 2026-02-11T17:02:28,646 copying galaxy/tools/bundled/stats/r_wrapper.sh -> build/lib/galaxy/tools/bundled/stats 2026-02-11T17:02:28,648 copying galaxy/workflow/resources/example.py.sample -> build/lib/galaxy/workflow/resources 2026-02-11T17:02:28,651 copying galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh -> build/lib/galaxy/jobs/runners/util/job_script 2026-02-11T17:02:28,653 copying galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh -> build/lib/galaxy/jobs/runners/util/job_script 2026-02-11T17:02:28,655 copying galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh -> build/lib/galaxy/jobs/runners/util/job_script 2026-02-11T17:02:28,657 copying galaxy/tools/imp_exp/exp_history_to_archive.xml -> build/lib/galaxy/tools/imp_exp 2026-02-11T17:02:28,659 copying galaxy/tools/imp_exp/exp_history_to_uri.xml -> build/lib/galaxy/tools/imp_exp 2026-02-11T17:02:28,662 copying galaxy/tools/imp_exp/imp_history_from_archive.xml -> build/lib/galaxy/tools/imp_exp 2026-02-11T17:02:28,664 copying galaxy/tools/expressions/cwlNodeEngine.js -> build/lib/galaxy/tools/expressions 2026-02-11T17:02:28,707 installing to build/bdist.linux-armv7l/wheel 2026-02-11T17:02:28,708 running install 2026-02-11T17:02:28,732 running install_lib 2026-02-11T17:02:28,740 creating build/bdist.linux-armv7l/wheel 2026-02-11T17:02:28,742 creating build/bdist.linux-armv7l/wheel/tool_shed_client 2026-02-11T17:02:28,744 creating build/bdist.linux-armv7l/wheel/tool_shed_client/schema 2026-02-11T17:02:28,745 copying build/lib/tool_shed_client/schema/trs.py -> build/bdist.linux-armv7l/wheel/./tool_shed_client/schema 2026-02-11T17:02:28,748 copying build/lib/tool_shed_client/schema/trs_service_info.py -> build/bdist.linux-armv7l/wheel/./tool_shed_client/schema 2026-02-11T17:02:28,750 copying build/lib/tool_shed_client/schema/__init__.py -> build/bdist.linux-armv7l/wheel/./tool_shed_client/schema 2026-02-11T17:02:28,752 copying build/lib/tool_shed_client/trs_util.py -> build/bdist.linux-armv7l/wheel/./tool_shed_client 2026-02-11T17:02:28,754 copying build/lib/tool_shed_client/py.typed -> build/bdist.linux-armv7l/wheel/./tool_shed_client 2026-02-11T17:02:28,756 copying build/lib/tool_shed_client/__init__.py -> build/bdist.linux-armv7l/wheel/./tool_shed_client 2026-02-11T17:02:28,759 creating build/bdist.linux-armv7l/wheel/galaxy 2026-02-11T17:02:28,760 copying build/lib/galaxy/queue_worker.py -> build/bdist.linux-armv7l/wheel/./galaxy 2026-02-11T17:02:28,763 copying build/lib/galaxy/main_config.py -> build/bdist.linux-armv7l/wheel/./galaxy 2026-02-11T17:02:28,765 creating build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils 2026-02-11T17:02:28,766 copying build/lib/galaxy/app_unittest_utils/tools_support.py -> build/bdist.linux-armv7l/wheel/./galaxy/app_unittest_utils 2026-02-11T17:02:28,769 copying build/lib/galaxy/app_unittest_utils/galaxy_mock.py -> build/bdist.linux-armv7l/wheel/./galaxy/app_unittest_utils 2026-02-11T17:02:28,771 copying build/lib/galaxy/app_unittest_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/app_unittest_utils 2026-02-11T17:02:28,773 copying build/lib/galaxy/app_unittest_utils/toolbox_support.py -> build/bdist.linux-armv7l/wheel/./galaxy/app_unittest_utils 2026-02-11T17:02:28,776 creating build/bdist.linux-armv7l/wheel/galaxy/managers 2026-02-11T17:02:28,777 copying build/lib/galaxy/managers/citations.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,780 copying build/lib/galaxy/managers/remote_files.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,782 copying build/lib/galaxy/managers/markdown_export_base.css -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,784 copying build/lib/galaxy/managers/group_users.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,786 copying build/lib/galaxy/managers/session.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,788 copying build/lib/galaxy/managers/ratable.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,790 copying build/lib/galaxy/managers/genomes.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,792 copying build/lib/galaxy/managers/file_source_instances.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,795 copying build/lib/galaxy/managers/datatypes.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,798 copying build/lib/galaxy/managers/job_connections.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,800 copying build/lib/galaxy/managers/roles.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,802 copying build/lib/galaxy/managers/tasks.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,804 copying build/lib/galaxy/managers/display_applications.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,806 copying build/lib/galaxy/managers/library_datasets.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,809 copying build/lib/galaxy/managers/histories.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,812 copying build/lib/galaxy/managers/users.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,815 copying build/lib/galaxy/managers/tools.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,817 copying build/lib/galaxy/managers/visualizations.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,819 copying build/lib/galaxy/managers/pages.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,822 copying build/lib/galaxy/managers/sharable.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,825 copying build/lib/galaxy/managers/dbkeys.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,827 copying build/lib/galaxy/managers/landing.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,829 copying build/lib/galaxy/managers/folders.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,832 copying build/lib/galaxy/managers/metrics.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,834 copying build/lib/galaxy/managers/hdcas.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,836 copying build/lib/galaxy/managers/credentials.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,839 copying build/lib/galaxy/managers/api_keys.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,841 copying build/lib/galaxy/managers/interactivetool.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,843 copying build/lib/galaxy/managers/model_stores.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,846 copying build/lib/galaxy/managers/workflows.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,850 copying build/lib/galaxy/managers/collections.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,853 copying build/lib/galaxy/managers/base.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,856 copying build/lib/galaxy/managers/markdown_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,859 copying build/lib/galaxy/managers/libraries.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,862 copying build/lib/galaxy/managers/lddas.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,864 copying build/lib/galaxy/managers/notification.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,866 copying build/lib/galaxy/managers/markdown_parse.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,869 copying build/lib/galaxy/managers/forms.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,871 copying build/lib/galaxy/managers/_config_templates.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,873 copying build/lib/galaxy/managers/annotatable.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,876 copying build/lib/galaxy/managers/executables.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,878 copying build/lib/galaxy/managers/chat.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,879 copying build/lib/galaxy/managers/context.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,882 copying build/lib/galaxy/managers/tool_data.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,884 copying build/lib/galaxy/managers/licenses.json -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,891 copying build/lib/galaxy/managers/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,893 copying build/lib/galaxy/managers/licenses.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,895 copying build/lib/galaxy/managers/jobs.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,899 copying build/lib/galaxy/managers/group_roles.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,901 copying build/lib/galaxy/managers/configuration.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,903 copying build/lib/galaxy/managers/secured.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,905 copying build/lib/galaxy/managers/history_contents.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,908 copying build/lib/galaxy/managers/quotas.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,911 copying build/lib/galaxy/managers/item_tags.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,913 copying build/lib/galaxy/managers/deletable.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,915 copying build/lib/galaxy/managers/tours.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,918 copying build/lib/galaxy/managers/taggable.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,920 copying build/lib/galaxy/managers/groups.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,922 copying build/lib/galaxy/managers/export_tracker.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,925 copying build/lib/galaxy/managers/tags.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,927 copying build/lib/galaxy/managers/datasets.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,930 copying build/lib/galaxy/managers/object_store_instances.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,933 copying build/lib/galaxy/managers/collections_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,936 copying build/lib/galaxy/managers/rbac_secured.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,939 copying build/lib/galaxy/managers/hdas.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-02-11T17:02:28,943 creating build/bdist.linux-armv7l/wheel/galaxy/celery 2026-02-11T17:02:28,944 copying build/lib/galaxy/celery/_serialization.py -> build/bdist.linux-armv7l/wheel/./galaxy/celery 2026-02-11T17:02:28,947 copying build/lib/galaxy/celery/tasks.py -> build/bdist.linux-armv7l/wheel/./galaxy/celery 2026-02-11T17:02:28,950 copying build/lib/galaxy/celery/base_task.py -> build/bdist.linux-armv7l/wheel/./galaxy/celery 2026-02-11T17:02:28,952 copying build/lib/galaxy/celery/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/celery 2026-02-11T17:02:28,955 creating build/bdist.linux-armv7l/wheel/galaxy/carbon_emissions 2026-02-11T17:02:28,957 copying build/lib/galaxy/carbon_emissions/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/carbon_emissions 2026-02-11T17:02:28,959 copying build/lib/galaxy/carbon_emissions/carbon_intensity.csv -> build/bdist.linux-armv7l/wheel/./galaxy/carbon_emissions 2026-02-11T17:02:28,963 creating build/bdist.linux-armv7l/wheel/galaxy/dependencies 2026-02-11T17:02:28,964 copying build/lib/galaxy/dependencies/script.py -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-02-11T17:02:28,967 copying build/lib/galaxy/dependencies/conditional-requirements.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-02-11T17:02:28,969 copying build/lib/galaxy/dependencies/dev-requirements.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-02-11T17:02:28,971 copying build/lib/galaxy/dependencies/pinned-requirements.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-02-11T17:02:28,974 copying build/lib/galaxy/dependencies/update.sh -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-02-11T17:02:28,976 copying build/lib/galaxy/dependencies/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-02-11T17:02:28,979 copying build/lib/galaxy/dependencies/pinned-lint-requirements.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-02-11T17:02:28,981 copying build/lib/galaxy/dependencies/lint-requirements.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-02-11T17:02:28,983 copying build/lib/galaxy/dependencies/pinned-typecheck-requirements.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-02-11T17:02:28,986 copying build/lib/galaxy/dependencies/pinned-test-requirements.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-02-11T17:02:28,989 copying build/lib/galaxy/dependencies/update_lint_requirements.sh -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-02-11T17:02:28,991 copying build/lib/galaxy/app.py -> build/bdist.linux-armv7l/wheel/./galaxy 2026-02-11T17:02:28,996 creating build/bdist.linux-armv7l/wheel/galaxy/workflow 2026-02-11T17:02:28,998 copying build/lib/galaxy/workflow/workflow_parameter_input_definitions.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-02-11T17:02:29,000 copying build/lib/galaxy/workflow/scheduling_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-02-11T17:02:29,004 copying build/lib/galaxy/workflow/extract.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-02-11T17:02:29,008 copying build/lib/galaxy/workflow/trs_proxy.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-02-11T17:02:29,011 copying build/lib/galaxy/workflow/run.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-02-11T17:02:29,015 copying build/lib/galaxy/workflow/modules.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-02-11T17:02:29,021 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/schedulers 2026-02-11T17:02:29,023 copying build/lib/galaxy/workflow/schedulers/core.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/schedulers 2026-02-11T17:02:29,025 copying build/lib/galaxy/workflow/schedulers/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/schedulers 2026-02-11T17:02:29,028 copying build/lib/galaxy/workflow/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-02-11T17:02:29,031 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/resources 2026-02-11T17:02:29,033 copying build/lib/galaxy/workflow/resources/example.py.sample -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/resources 2026-02-11T17:02:29,036 copying build/lib/galaxy/workflow/resources/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/resources 2026-02-11T17:02:29,040 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/reports 2026-02-11T17:02:29,042 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/reports/generators 2026-02-11T17:02:29,044 copying build/lib/galaxy/workflow/reports/generators/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/reports/generators 2026-02-11T17:02:29,047 copying build/lib/galaxy/workflow/reports/generators/markdown.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/reports/generators 2026-02-11T17:02:29,050 copying build/lib/galaxy/workflow/reports/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/reports 2026-02-11T17:02:29,053 copying build/lib/galaxy/workflow/render.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-02-11T17:02:29,057 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/refactor 2026-02-11T17:02:29,059 copying build/lib/galaxy/workflow/refactor/schema.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/refactor 2026-02-11T17:02:29,063 copying build/lib/galaxy/workflow/refactor/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/refactor 2026-02-11T17:02:29,065 copying build/lib/galaxy/workflow/refactor/execute.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/refactor 2026-02-11T17:02:29,069 copying build/lib/galaxy/workflow/run_request.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-02-11T17:02:29,073 copying build/lib/galaxy/workflow/steps.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-02-11T17:02:29,077 copying build/lib/galaxy/workflow/errors.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-02-11T17:02:29,080 copying build/lib/galaxy/di.py -> build/bdist.linux-armv7l/wheel/./galaxy 2026-02-11T17:02:29,083 creating build/bdist.linux-armv7l/wheel/galaxy/forms 2026-02-11T17:02:29,085 copying build/lib/galaxy/forms/forms.py -> build/bdist.linux-armv7l/wheel/./galaxy/forms 2026-02-11T17:02:29,088 copying build/lib/galaxy/forms/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/forms 2026-02-11T17:02:29,090 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed 2026-02-11T17:02:29,092 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/metadata 2026-02-11T17:02:29,093 copying build/lib/galaxy/tool_shed/metadata/metadata_generator.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/metadata 2026-02-11T17:02:29,097 copying build/lib/galaxy/tool_shed/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/metadata 2026-02-11T17:02:29,099 copying build/lib/galaxy/tool_shed/repository_type.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed 2026-02-11T17:02:29,101 copying build/lib/galaxy/tool_shed/cache.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed 2026-02-11T17:02:29,104 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2026-02-11T17:02:29,105 copying build/lib/galaxy/tool_shed/util/tool_dependency_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-02-11T17:02:29,108 copying build/lib/galaxy/tool_shed/util/hg_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-02-11T17:02:29,111 copying build/lib/galaxy/tool_shed/util/basic_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-02-11T17:02:29,113 copying build/lib/galaxy/tool_shed/util/tool_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-02-11T17:02:29,116 copying build/lib/galaxy/tool_shed/util/utility_container_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-02-11T17:02:29,119 copying build/lib/galaxy/tool_shed/util/metadata_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-02-11T17:02:29,122 copying build/lib/galaxy/tool_shed/util/dependency_display.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-02-11T17:02:29,124 copying build/lib/galaxy/tool_shed/util/container_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-02-11T17:02:29,127 copying build/lib/galaxy/tool_shed/util/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-02-11T17:02:29,129 copying build/lib/galaxy/tool_shed/util/shed_util_common.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-02-11T17:02:29,132 copying build/lib/galaxy/tool_shed/util/repository_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-02-11T17:02:29,135 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install 2026-02-11T17:02:29,137 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/metadata 2026-02-11T17:02:29,139 copying build/lib/galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install/metadata 2026-02-11T17:02:29,142 copying build/lib/galaxy/tool_shed/galaxy_install/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install/metadata 2026-02-11T17:02:29,144 copying build/lib/galaxy/tool_shed/galaxy_install/installed_repository_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install 2026-02-11T17:02:29,148 copying build/lib/galaxy/tool_shed/galaxy_install/client.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install 2026-02-11T17:02:29,151 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/repository_dependencies 2026-02-11T17:02:29,152 copying build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install/repository_dependencies 2026-02-11T17:02:29,154 copying build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install/repository_dependencies 2026-02-11T17:02:29,158 copying build/lib/galaxy/tool_shed/galaxy_install/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install 2026-02-11T17:02:29,160 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/tools 2026-02-11T17:02:29,162 copying build/lib/galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install/tools 2026-02-11T17:02:29,165 copying build/lib/galaxy/tool_shed/galaxy_install/tools/data_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install/tools 2026-02-11T17:02:29,168 copying build/lib/galaxy/tool_shed/galaxy_install/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install/tools 2026-02-11T17:02:29,170 copying build/lib/galaxy/tool_shed/galaxy_install/install_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install 2026-02-11T17:02:29,173 copying build/lib/galaxy/tool_shed/galaxy_install/update_repository_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install 2026-02-11T17:02:29,176 copying build/lib/galaxy/tool_shed/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed 2026-02-11T17:02:29,178 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/unittest_utils 2026-02-11T17:02:29,180 copying build/lib/galaxy/tool_shed/unittest_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/unittest_utils 2026-02-11T17:02:29,183 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/tools 2026-02-11T17:02:29,184 copying build/lib/galaxy/tool_shed/tools/tool_validator.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/tools 2026-02-11T17:02:29,187 copying build/lib/galaxy/tool_shed/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/tools 2026-02-11T17:02:29,189 copying build/lib/galaxy/tool_shed/tools/data_table_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/tools 2026-02-11T17:02:29,192 copying build/lib/galaxy/structured_app.py -> build/bdist.linux-armv7l/wheel/./galaxy 2026-02-11T17:02:29,194 copying build/lib/galaxy/py.typed -> build/bdist.linux-armv7l/wheel/./galaxy 2026-02-11T17:02:29,196 copying build/lib/galaxy/config_watchers.py -> build/bdist.linux-armv7l/wheel/./galaxy 2026-02-11T17:02:29,199 copying build/lib/galaxy/queues.py -> build/bdist.linux-armv7l/wheel/./galaxy 2026-02-11T17:02:29,202 creating build/bdist.linux-armv7l/wheel/galaxy/webhooks 2026-02-11T17:02:29,203 copying build/lib/galaxy/webhooks/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/webhooks 2026-02-11T17:02:29,205 copying build/lib/galaxy/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy 2026-02-11T17:02:29,208 creating build/bdist.linux-armv7l/wheel/galaxy/actions 2026-02-11T17:02:29,210 copying build/lib/galaxy/actions/library.py -> build/bdist.linux-armv7l/wheel/./galaxy/actions 2026-02-11T17:02:29,213 copying build/lib/galaxy/actions/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/actions 2026-02-11T17:02:29,215 creating build/bdist.linux-armv7l/wheel/galaxy/work 2026-02-11T17:02:29,216 copying build/lib/galaxy/work/context.py -> build/bdist.linux-armv7l/wheel/./galaxy/work 2026-02-11T17:02:29,219 copying build/lib/galaxy/work/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/work 2026-02-11T17:02:29,221 creating build/bdist.linux-armv7l/wheel/galaxy/short_term_storage 2026-02-11T17:02:29,223 copying build/lib/galaxy/short_term_storage/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/short_term_storage 2026-02-11T17:02:29,226 creating build/bdist.linux-armv7l/wheel/galaxy/authnz 2026-02-11T17:02:29,228 copying build/lib/galaxy/authnz/tapis.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-02-11T17:02:29,230 copying build/lib/galaxy/authnz/custos_authnz.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-02-11T17:02:29,233 copying build/lib/galaxy/authnz/psa_authnz.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-02-11T17:02:29,235 copying build/lib/galaxy/authnz/util.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-02-11T17:02:29,237 copying build/lib/galaxy/authnz/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-02-11T17:02:29,239 copying build/lib/galaxy/authnz/managers.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-02-11T17:02:29,242 creating build/bdist.linux-armv7l/wheel/galaxy/jobs 2026-02-11T17:02:29,244 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2026-02-11T17:02:29,245 copying build/lib/galaxy/jobs/runners/tasks.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-02-11T17:02:29,248 copying build/lib/galaxy/jobs/runners/cli.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-02-11T17:02:29,250 copying build/lib/galaxy/jobs/runners/chronos.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-02-11T17:02:29,252 copying build/lib/galaxy/jobs/runners/drmaa.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-02-11T17:02:29,255 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/state_handlers 2026-02-11T17:02:29,256 copying build/lib/galaxy/jobs/runners/state_handlers/resubmit.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/state_handlers 2026-02-11T17:02:29,259 copying build/lib/galaxy/jobs/runners/state_handlers/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/state_handlers 2026-02-11T17:02:29,260 copying build/lib/galaxy/jobs/runners/state_handlers/_safe_eval.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/state_handlers 2026-02-11T17:02:29,263 copying build/lib/galaxy/jobs/runners/pulsar.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-02-11T17:02:29,266 copying build/lib/galaxy/jobs/runners/local.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-02-11T17:02:29,269 copying build/lib/galaxy/jobs/runners/univa.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-02-11T17:02:29,271 copying build/lib/galaxy/jobs/runners/slurm.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-02-11T17:02:29,274 copying build/lib/galaxy/jobs/runners/state_handler_factory.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-02-11T17:02:29,277 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2026-02-11T17:02:29,278 copying build/lib/galaxy/jobs/runners/util/external.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2026-02-11T17:02:29,280 copying build/lib/galaxy/jobs/runners/util/pykube_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2026-02-11T17:02:29,282 copying build/lib/galaxy/jobs/runners/util/fork_safe_write.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2026-02-11T17:02:29,284 copying build/lib/galaxy/jobs/runners/util/kill.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2026-02-11T17:02:29,286 copying build/lib/galaxy/jobs/runners/util/env.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2026-02-11T17:02:29,288 copying build/lib/galaxy/jobs/runners/util/process_groups.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2026-02-11T17:02:29,290 copying build/lib/galaxy/jobs/runners/util/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2026-02-11T17:02:29,293 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli 2026-02-11T17:02:29,294 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/shell 2026-02-11T17:02:29,295 copying build/lib/galaxy/jobs/runners/util/cli/shell/rsh.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/shell 2026-02-11T17:02:29,298 copying build/lib/galaxy/jobs/runners/util/cli/shell/local.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/shell 2026-02-11T17:02:29,300 copying build/lib/galaxy/jobs/runners/util/cli/shell/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/shell 2026-02-11T17:02:29,302 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2026-02-11T17:02:29,303 copying build/lib/galaxy/jobs/runners/util/cli/job/torque.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/job 2026-02-11T17:02:29,305 copying build/lib/galaxy/jobs/runners/util/cli/job/slurm.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/job 2026-02-11T17:02:29,308 copying build/lib/galaxy/jobs/runners/util/cli/job/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/job 2026-02-11T17:02:29,310 copying build/lib/galaxy/jobs/runners/util/cli/job/slurm_torque.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/job 2026-02-11T17:02:29,312 copying build/lib/galaxy/jobs/runners/util/cli/job/lsf.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/job 2026-02-11T17:02:29,314 copying build/lib/galaxy/jobs/runners/util/cli/job/pbs.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/job 2026-02-11T17:02:29,316 copying build/lib/galaxy/jobs/runners/util/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli 2026-02-11T17:02:29,318 copying build/lib/galaxy/jobs/runners/util/cli/factory.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli 2026-02-11T17:02:29,320 copying build/lib/galaxy/jobs/runners/util/sudo.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2026-02-11T17:02:29,322 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script 2026-02-11T17:02:29,323 copying build/lib/galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/job_script 2026-02-11T17:02:29,325 copying build/lib/galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/job_script 2026-02-11T17:02:29,327 copying build/lib/galaxy/jobs/runners/util/job_script/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/job_script 2026-02-11T17:02:29,329 copying build/lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/job_script 2026-02-11T17:02:29,332 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/condor 2026-02-11T17:02:29,333 copying build/lib/galaxy/jobs/runners/util/condor/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/condor 2026-02-11T17:02:29,335 copying build/lib/galaxy/jobs/runners/aws.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-02-11T17:02:29,338 copying build/lib/galaxy/jobs/runners/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-02-11T17:02:29,341 copying build/lib/galaxy/jobs/runners/godocker.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-02-11T17:02:29,343 copying build/lib/galaxy/jobs/runners/condor.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-02-11T17:02:29,346 copying build/lib/galaxy/jobs/runners/kubernetes.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-02-11T17:02:29,349 copying build/lib/galaxy/jobs/runners/pbs.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-02-11T17:02:29,352 copying build/lib/galaxy/jobs/manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-02-11T17:02:29,354 copying build/lib/galaxy/jobs/rule_helper.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-02-11T17:02:29,357 copying build/lib/galaxy/jobs/stock_rules.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-02-11T17:02:29,359 copying build/lib/galaxy/jobs/mapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-02-11T17:02:29,362 copying build/lib/galaxy/jobs/dynamic_tool_destination.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-02-11T17:02:29,366 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/splitters 2026-02-11T17:02:29,367 copying build/lib/galaxy/jobs/splitters/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/splitters 2026-02-11T17:02:29,369 copying build/lib/galaxy/jobs/splitters/multi.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/splitters 2026-02-11T17:02:29,371 copying build/lib/galaxy/jobs/splitters/basic.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/splitters 2026-02-11T17:02:29,373 copying build/lib/galaxy/jobs/handler.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-02-11T17:02:29,376 copying build/lib/galaxy/jobs/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-02-11T17:02:29,382 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/rules 2026-02-11T17:02:29,383 copying build/lib/galaxy/jobs/rules/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/rules 2026-02-11T17:02:29,385 copying build/lib/galaxy/jobs/command_factory.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-02-11T17:02:29,389 creating build/bdist.linux-armv7l/wheel/galaxy/tools 2026-02-11T17:02:29,390 copying build/lib/galaxy/tools/build_list.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:29,392 copying build/lib/galaxy/tools/biotools.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:29,394 creating build/bdist.linux-armv7l/wheel/galaxy/tools/search 2026-02-11T17:02:29,395 copying build/lib/galaxy/tools/search/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/search 2026-02-11T17:02:29,398 copying build/lib/galaxy/tools/merge_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:29,400 copying build/lib/galaxy/tools/recommendations.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:29,403 creating build/bdist.linux-armv7l/wheel/galaxy/tools/filters 2026-02-11T17:02:29,405 copying build/lib/galaxy/tools/filters/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/filters 2026-02-11T17:02:29,407 copying build/lib/galaxy/tools/stock.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:29,409 copying build/lib/galaxy/tools/filter_failed_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:29,411 creating build/bdist.linux-armv7l/wheel/galaxy/tools/data_manager 2026-02-11T17:02:29,412 copying build/lib/galaxy/tools/data_manager/manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/data_manager 2026-02-11T17:02:29,414 copying build/lib/galaxy/tools/data_manager/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/data_manager 2026-02-11T17:02:29,416 copying build/lib/galaxy/tools/filter_from_file.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:29,418 copying build/lib/galaxy/tools/remote_tool_eval.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:29,421 creating build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2026-02-11T17:02:29,422 copying build/lib/galaxy/tools/imp_exp/exp_history_to_uri.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/imp_exp 2026-02-11T17:02:29,424 copying build/lib/galaxy/tools/imp_exp/exp_history_to_archive.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/imp_exp 2026-02-11T17:02:29,426 copying build/lib/galaxy/tools/imp_exp/imp_history_from_archive.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/imp_exp 2026-02-11T17:02:29,428 copying build/lib/galaxy/tools/imp_exp/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/imp_exp 2026-02-11T17:02:29,430 copying build/lib/galaxy/tools/imp_exp/unpack_tar_gz_archive.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/imp_exp 2026-02-11T17:02:29,432 copying build/lib/galaxy/tools/imp_exp/export_history.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/imp_exp 2026-02-11T17:02:29,434 creating build/bdist.linux-armv7l/wheel/galaxy/tools/fetch 2026-02-11T17:02:29,435 copying build/lib/galaxy/tools/fetch/workbooks.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/fetch 2026-02-11T17:02:29,438 copying build/lib/galaxy/tools/fetch/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/fetch 2026-02-11T17:02:29,440 copying build/lib/galaxy/tools/cache.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:29,442 copying build/lib/galaxy/tools/model_operation_macros.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:29,444 creating build/bdist.linux-armv7l/wheel/galaxy/tools/expressions 2026-02-11T17:02:29,445 copying build/lib/galaxy/tools/expressions/script.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/expressions 2026-02-11T17:02:29,447 copying build/lib/galaxy/tools/expressions/util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/expressions 2026-02-11T17:02:29,449 copying build/lib/galaxy/tools/expressions/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/expressions 2026-02-11T17:02:29,451 copying build/lib/galaxy/tools/expressions/cwlNodeEngine.js -> build/bdist.linux-armv7l/wheel/./galaxy/tools/expressions 2026-02-11T17:02:29,452 copying build/lib/galaxy/tools/expressions/evaluation.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/expressions 2026-02-11T17:02:29,454 copying build/lib/galaxy/tools/data_fetch.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:29,457 copying build/lib/galaxy/tools/cross_product_flat.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:29,459 copying build/lib/galaxy/tools/relabel_from_file.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:29,462 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled 2026-02-11T17:02:29,464 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/expression_tools 2026-02-11T17:02:29,465 copying build/lib/galaxy/tools/bundled/expression_tools/parse_values_from_file.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/expression_tools 2026-02-11T17:02:29,467 copying build/lib/galaxy/tools/bundled/expression_tools/pick_value.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/expression_tools 2026-02-11T17:02:29,469 copying build/lib/galaxy/tools/bundled/expression_tools/expression_macros.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/expression_tools 2026-02-11T17:02:29,472 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2026-02-11T17:02:29,473 copying build/lib/galaxy/tools/bundled/data_source/genbank.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-02-11T17:02:29,475 copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-02-11T17:02:29,477 copying build/lib/galaxy/tools/bundled/data_source/upload.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-02-11T17:02:29,480 copying build/lib/galaxy/tools/bundled/data_source/eupathdb.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-02-11T17:02:29,481 copying build/lib/galaxy/tools/bundled/data_source/flymine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-02-11T17:02:29,483 copying build/lib/galaxy/tools/bundled/data_source/modmine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-02-11T17:02:29,485 copying build/lib/galaxy/tools/bundled/data_source/wormbase_test.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-02-11T17:02:29,487 copying build/lib/galaxy/tools/bundled/data_source/gramene_mart.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-02-11T17:02:29,489 copying build/lib/galaxy/tools/bundled/data_source/data_source.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-02-11T17:02:29,491 copying build/lib/galaxy/tools/bundled/data_source/cbi_rice_mart.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-02-11T17:02:29,493 copying build/lib/galaxy/tools/bundled/data_source/upload.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-02-11T17:02:29,495 copying build/lib/galaxy/tools/bundled/data_source/ratmine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-02-11T17:02:29,497 copying build/lib/galaxy/tools/bundled/data_source/wormbase.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-02-11T17:02:29,499 copying build/lib/galaxy/tools/bundled/data_source/sra.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-02-11T17:02:29,500 copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-02-11T17:02:29,502 copying build/lib/galaxy/tools/bundled/data_source/biomart_test.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-02-11T17:02:29,504 copying build/lib/galaxy/tools/bundled/data_source/fly_modencode.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-02-11T17:02:29,506 copying build/lib/galaxy/tools/bundled/data_source/worm_modencode.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-02-11T17:02:29,508 copying build/lib/galaxy/tools/bundled/data_source/hapmapmart.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-02-11T17:02:29,510 copying build/lib/galaxy/tools/bundled/data_source/diced.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-02-11T17:02:29,512 copying build/lib/galaxy/tools/bundled/data_source/import.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-02-11T17:02:29,513 copying build/lib/galaxy/tools/bundled/data_source/intermine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-02-11T17:02:29,515 copying build/lib/galaxy/tools/bundled/data_source/zebrafishmine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-02-11T17:02:29,517 copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-02-11T17:02:29,519 copying build/lib/galaxy/tools/bundled/data_source/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-02-11T17:02:29,521 copying build/lib/galaxy/tools/bundled/data_source/flymine_test.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-02-11T17:02:29,523 copying build/lib/galaxy/tools/bundled/data_source/hbvar.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-02-11T17:02:29,525 copying build/lib/galaxy/tools/bundled/data_source/microbial_import_code.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-02-11T17:02:29,527 copying build/lib/galaxy/tools/bundled/data_source/ncbi_datasets.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-02-11T17:02:29,529 copying build/lib/galaxy/tools/bundled/data_source/yeastmine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-02-11T17:02:29,530 copying build/lib/galaxy/tools/bundled/data_source/microbial_import.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-02-11T17:02:29,532 copying build/lib/galaxy/tools/bundled/data_source/mousemine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-02-11T17:02:29,534 copying build/lib/galaxy/tools/bundled/data_source/import.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-02-11T17:02:29,536 copying build/lib/galaxy/tools/bundled/data_source/metabolicmine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-02-11T17:02:29,538 copying build/lib/galaxy/tools/bundled/data_source/genbank.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-02-11T17:02:29,540 copying build/lib/galaxy/tools/bundled/data_source/biomart.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-02-11T17:02:29,542 copying build/lib/galaxy/tools/bundled/data_source/access_libraries.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-02-11T17:02:29,543 copying build/lib/galaxy/tools/bundled/data_source/microbial_import.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-02-11T17:02:29,545 copying build/lib/galaxy/tools/bundled/data_source/ebi_sra.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-02-11T17:02:29,548 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2026-02-11T17:02:29,549 copying build/lib/galaxy/tools/bundled/maf/maf_to_interval.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-02-11T17:02:29,551 copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta_multiple_sets.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-02-11T17:02:29,553 copying build/lib/galaxy/tools/bundled/maf/maf_to_bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-02-11T17:02:29,555 copying build/lib/galaxy/tools/bundled/maf/maf_stats.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-02-11T17:02:29,557 copying build/lib/galaxy/tools/bundled/maf/maf_limit_size.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-02-11T17:02:29,559 copying build/lib/galaxy/tools/bundled/maf/maf_reverse_complement.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-02-11T17:02:29,561 copying build/lib/galaxy/tools/bundled/maf/genebed_maf_to_fasta.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-02-11T17:02:29,563 copying build/lib/galaxy/tools/bundled/maf/interval2maf.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-02-11T17:02:29,566 copying build/lib/galaxy/tools/bundled/maf/interval2maf_pairwise.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-02-11T17:02:29,568 copying build/lib/galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-02-11T17:02:29,570 copying build/lib/galaxy/tools/bundled/maf/maf_thread_for_species.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-02-11T17:02:29,572 copying build/lib/galaxy/tools/bundled/maf/maf_stats.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-02-11T17:02:29,574 copying build/lib/galaxy/tools/bundled/maf/macros.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-02-11T17:02:29,576 copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-02-11T17:02:29,578 copying build/lib/galaxy/tools/bundled/maf/maf_reverse_complement.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-02-11T17:02:29,580 copying build/lib/galaxy/tools/bundled/maf/maf_to_bed_code.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-02-11T17:02:29,582 copying build/lib/galaxy/tools/bundled/maf/maf_by_block_number.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-02-11T17:02:29,584 copying build/lib/galaxy/tools/bundled/maf/maf_limit_to_species.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-02-11T17:02:29,586 copying build/lib/galaxy/tools/bundled/maf/maf_filter.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-02-11T17:02:29,588 copying build/lib/galaxy/tools/bundled/maf/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-02-11T17:02:29,590 copying build/lib/galaxy/tools/bundled/maf/maf_to_bed.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-02-11T17:02:29,592 copying build/lib/galaxy/tools/bundled/maf/maf_limit_to_species.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-02-11T17:02:29,594 copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta_concat.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-02-11T17:02:29,596 copying build/lib/galaxy/tools/bundled/maf/maf_by_block_number.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-02-11T17:02:29,597 copying build/lib/galaxy/tools/bundled/maf/maf_limit_size.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-02-11T17:02:29,599 copying build/lib/galaxy/tools/bundled/maf/maf_thread_for_species.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-02-11T17:02:29,601 copying build/lib/galaxy/tools/bundled/maf/maf_split_by_species.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-02-11T17:02:29,602 copying build/lib/galaxy/tools/bundled/maf/maf_to_interval.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-02-11T17:02:29,604 copying build/lib/galaxy/tools/bundled/maf/maf_filter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-02-11T17:02:29,607 copying build/lib/galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-02-11T17:02:29,609 copying build/lib/galaxy/tools/bundled/maf/interval2maf.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-02-11T17:02:29,611 copying build/lib/galaxy/tools/bundled/maf/vcf_to_maf_customtrack.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-02-11T17:02:29,614 copying build/lib/galaxy/tools/bundled/maf/maf_split_by_species.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-02-11T17:02:29,616 copying build/lib/galaxy/tools/bundled/maf/vcf_to_maf_customtrack.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-02-11T17:02:29,620 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2026-02-11T17:02:29,621 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,624 copying build/lib/galaxy/tools/bundled/filters/sff_extract.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,626 copying build/lib/galaxy/tools/bundled/filters/secure_hash_message_digest.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,629 copying build/lib/galaxy/tools/bundled/filters/condense_characters.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,631 copying build/lib/galaxy/tools/bundled/filters/axt_to_concat_fasta.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,632 copying build/lib/galaxy/tools/bundled/filters/randomlines.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,634 copying build/lib/galaxy/tools/bundled/filters/secure_hash_message_digest.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,636 copying build/lib/galaxy/tools/bundled/filters/grep_1.0.1.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,638 copying build/lib/galaxy/tools/bundled/filters/catWrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,640 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,642 copying build/lib/galaxy/tools/bundled/filters/changeCase.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,644 copying build/lib/galaxy/tools/bundled/filters/changeCase.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,646 copying build/lib/galaxy/tools/bundled/filters/convert_characters.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,648 copying build/lib/galaxy/tools/bundled/filters/bed_to_bigbed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,650 copying build/lib/galaxy/tools/bundled/filters/fileGrep.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,652 copying build/lib/galaxy/tools/bundled/filters/joiner2.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,653 copying build/lib/galaxy/tools/bundled/filters/random_lines_two_pass.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,655 copying build/lib/galaxy/tools/bundled/filters/joiner.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,658 copying build/lib/galaxy/tools/bundled/filters/fixedValueColumn.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,659 copying build/lib/galaxy/tools/bundled/filters/gff_to_bed_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,662 copying build/lib/galaxy/tools/bundled/filters/CreateInterval.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,664 copying build/lib/galaxy/tools/bundled/filters/mergeCols.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,666 copying build/lib/galaxy/tools/bundled/filters/mergeCols.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,668 copying build/lib/galaxy/tools/bundled/filters/uniq.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,670 copying build/lib/galaxy/tools/bundled/filters/sff_extractor.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,672 copying build/lib/galaxy/tools/bundled/filters/gtf2bedgraph.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,674 copying build/lib/galaxy/tools/bundled/filters/bed2gff.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,676 copying build/lib/galaxy/tools/bundled/filters/gff2bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,678 copying build/lib/galaxy/tools/bundled/filters/condense_characters.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,680 copying build/lib/galaxy/tools/bundled/filters/cutWrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,683 copying build/lib/galaxy/tools/bundled/filters/axt_to_lav_code.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,684 copying build/lib/galaxy/tools/bundled/filters/commWrapper.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,686 copying build/lib/galaxy/tools/bundled/filters/CreateInterval.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,688 copying build/lib/galaxy/tools/bundled/filters/uniq.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,690 copying build/lib/galaxy/tools/bundled/filters/headWrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,692 copying build/lib/galaxy/tools/bundled/filters/pasteWrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,694 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,696 copying build/lib/galaxy/tools/bundled/filters/axt_to_fasta.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,698 copying build/lib/galaxy/tools/bundled/filters/convert_characters.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,700 copying build/lib/galaxy/tools/bundled/filters/randomlines.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,702 copying build/lib/galaxy/tools/bundled/filters/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,704 copying build/lib/galaxy/tools/bundled/filters/lav_to_bed_code.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,705 copying build/lib/galaxy/tools/bundled/filters/axt_to_concat_fasta.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,707 copying build/lib/galaxy/tools/bundled/filters/fixedValueColumn.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,709 copying build/lib/galaxy/tools/bundled/filters/axt_to_lav.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,712 copying build/lib/galaxy/tools/bundled/filters/tailWrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,713 copying build/lib/galaxy/tools/bundled/filters/sorter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,716 copying build/lib/galaxy/tools/bundled/filters/axt_to_fasta.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,718 copying build/lib/galaxy/tools/bundled/filters/lav_to_bed.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,720 copying build/lib/galaxy/tools/bundled/filters/commWrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,722 copying build/lib/galaxy/tools/bundled/filters/cutWrapper.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,724 copying build/lib/galaxy/tools/bundled/filters/lav_to_bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,726 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,728 copying build/lib/galaxy/tools/bundled/filters/bed_to_gff_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,730 copying build/lib/galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,732 copying build/lib/galaxy/tools/bundled/filters/grep.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,734 copying build/lib/galaxy/tools/bundled/filters/join.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,737 copying build/lib/galaxy/tools/bundled/filters/axt_to_lav.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,739 copying build/lib/galaxy/tools/bundled/filters/wc_gnu.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,741 copying build/lib/galaxy/tools/bundled/filters/wig_to_bigwig.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,743 copying build/lib/galaxy/tools/bundled/filters/remove_beginning.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,745 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,748 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2026-02-11T17:02:29,749 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-02-11T17:02:29,751 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-02-11T17:02:29,753 copying build/lib/galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-02-11T17:02:29,755 copying build/lib/galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-02-11T17:02:29,757 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-02-11T17:02:29,760 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-02-11T17:02:29,762 copying build/lib/galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-02-11T17:02:29,764 copying build/lib/galaxy/tools/bundled/filters/gff/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-02-11T17:02:29,766 copying build/lib/galaxy/tools/bundled/filters/gff/extract_GFF_Features.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-02-11T17:02:29,767 copying build/lib/galaxy/tools/bundled/filters/trimmer.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,770 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,772 copying build/lib/galaxy/tools/bundled/filters/wiggle_to_simple.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,774 copying build/lib/galaxy/tools/bundled/filters/wiggle_to_simple.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,775 copying build/lib/galaxy/tools/bundled/filters/compare.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,778 copying build/lib/galaxy/tools/bundled/filters/trimmer.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-02-11T17:02:29,780 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2026-02-11T17:02:29,781 copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2026-02-11T17:02:29,784 copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2026-02-11T17:02:29,786 copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_stats.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2026-02-11T17:02:29,788 copying build/lib/galaxy/tools/bundled/solid_tools/qualsolid_boxplot_graph.sh -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2026-02-11T17:02:29,791 copying build/lib/galaxy/tools/bundled/solid_tools/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2026-02-11T17:02:29,793 copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper_code.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2026-02-11T17:02:29,795 copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_boxplot.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2026-02-11T17:02:29,797 copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_stats.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2026-02-11T17:02:29,802 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2026-02-11T17:02:29,803 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_cellxgene_1.1.1.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-02-11T17:02:29,806 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_panoply.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-02-11T17:02:29,809 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pangeo_notebook.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-02-11T17:02:29,812 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_geoexplorer.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-02-11T17:02:29,814 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_ilastik.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-02-11T17:02:29,817 copying build/lib/galaxy/tools/bundled/interactive/default_notebook.ipynb -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-02-11T17:02:29,819 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pavian.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-02-11T17:02:29,822 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_metashark.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-02-11T17:02:29,824 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_askomics.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-02-11T17:02:29,826 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_simtext_app.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-02-11T17:02:29,829 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_rstudio_bioc_3.20.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-02-11T17:02:29,831 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_ethercalc.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-02-11T17:02:29,834 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_blobtoolkit.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-02-11T17:02:29,836 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_wilson.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-02-11T17:02:29,839 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_paraview.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-02-11T17:02:29,841 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_vcf_iobio.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-02-11T17:02:29,843 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_hicbrowser.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-02-11T17:02:29,846 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.3.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-02-11T17:02:29,849 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_ml_jupyter_notebook.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-02-11T17:02:29,852 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_vrm_editor.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-02-11T17:02:29,854 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_wallace.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-02-11T17:02:29,857 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.1.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-02-11T17:02:29,860 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_bam_iobio.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-02-11T17:02:29,862 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_guacamole_desktop.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-02-11T17:02:29,864 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pyiron.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-02-11T17:02:29,867 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_neo4j.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-02-11T17:02:29,870 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_mgnify_notebook.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-02-11T17:02:29,872 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_phinch.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-02-11T17:02:29,875 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_higlass.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-02-11T17:02:29,878 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_qiskit_jupyter_notebook.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-02-11T17:02:29,881 copying build/lib/galaxy/tools/bundled/interactive/Rprofile.R -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-02-11T17:02:29,883 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_rstudio.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-02-11T17:02:29,885 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_climate_notebook.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-02-11T17:02:29,888 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_cellxgene_0.16.2.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-02-11T17:02:29,890 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_openrefine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-02-11T17:02:29,892 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_radiant.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-02-11T17:02:29,894 copying build/lib/galaxy/tools/bundled/interactive/simtext_app.R -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-02-11T17:02:29,896 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-02-11T17:02:29,899 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_isee.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-02-11T17:02:29,901 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-02-11T17:02:29,904 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2026-02-11T17:02:29,905 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_wrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/metag_tools 2026-02-11T17:02:29,908 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/metag_tools 2026-02-11T17:02:29,910 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/metag_tools 2026-02-11T17:02:29,913 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/metag_tools 2026-02-11T17:02:29,915 copying build/lib/galaxy/tools/bundled/metag_tools/blat_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/metag_tools 2026-02-11T17:02:29,918 copying build/lib/galaxy/tools/bundled/metag_tools/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/metag_tools 2026-02-11T17:02:29,919 copying build/lib/galaxy/tools/bundled/metag_tools/blat_wrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/metag_tools 2026-02-11T17:02:29,922 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2026-02-11T17:02:29,923 copying build/lib/galaxy/tools/bundled/stats/gsummary.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-02-11T17:02:29,926 copying build/lib/galaxy/tools/bundled/stats/filtering.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-02-11T17:02:29,928 copying build/lib/galaxy/tools/bundled/stats/aggregate_binned_scores_in_intervals.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-02-11T17:02:29,931 copying build/lib/galaxy/tools/bundled/stats/r_wrapper.sh -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-02-11T17:02:29,933 copying build/lib/galaxy/tools/bundled/stats/gsummary.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-02-11T17:02:29,935 copying build/lib/galaxy/tools/bundled/stats/grouping.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-02-11T17:02:29,937 copying build/lib/galaxy/tools/bundled/stats/aggregate_scores_in_intervals.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-02-11T17:02:29,939 copying build/lib/galaxy/tools/bundled/stats/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-02-11T17:02:29,941 copying build/lib/galaxy/tools/bundled/stats/grouping.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-02-11T17:02:29,943 copying build/lib/galaxy/tools/bundled/stats/filtering.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-02-11T17:02:29,946 copying build/lib/galaxy/tools/bundled/stats/filtering_1_1_0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-02-11T17:02:29,949 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/ngs_simulation 2026-02-11T17:02:29,950 copying build/lib/galaxy/tools/bundled/ngs_simulation/ngs_simulation.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/ngs_simulation 2026-02-11T17:02:29,952 copying build/lib/galaxy/tools/bundled/ngs_simulation/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/ngs_simulation 2026-02-11T17:02:29,954 copying build/lib/galaxy/tools/bundled/ngs_simulation/ngs_simulation.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/ngs_simulation 2026-02-11T17:02:29,957 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2026-02-11T17:02:29,958 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-02-11T17:02:29,960 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-02-11T17:02:29,963 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid2fastq.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-02-11T17:02:29,965 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-02-11T17:02:29,967 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_conversions.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-02-11T17:02:29,969 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid2fastq.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-02-11T17:02:29,972 copying build/lib/galaxy/tools/bundled/next_gen_conversion/bwa_solid2fastq_modified.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-02-11T17:02:29,974 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_conversions.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-02-11T17:02:29,976 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-02-11T17:02:29,978 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly 2026-02-11T17:02:29,979 copying build/lib/galaxy/tools/bundled/sr_assembly/velvetg_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_assembly 2026-02-11T17:02:29,982 copying build/lib/galaxy/tools/bundled/sr_assembly/velveth.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_assembly 2026-02-11T17:02:29,984 copying build/lib/galaxy/tools/bundled/sr_assembly/velvetg.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_assembly 2026-02-11T17:02:29,987 copying build/lib/galaxy/tools/bundled/sr_assembly/velveth_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_assembly 2026-02-11T17:02:29,989 copying build/lib/galaxy/tools/bundled/sr_assembly/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_assembly 2026-02-11T17:02:29,991 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/plotting 2026-02-11T17:02:29,992 copying build/lib/galaxy/tools/bundled/plotting/boxplot.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/plotting 2026-02-11T17:02:29,994 copying build/lib/galaxy/tools/bundled/plotting/bar_chart.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/plotting 2026-02-11T17:02:29,997 copying build/lib/galaxy/tools/bundled/plotting/bar_chart.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/plotting 2026-02-11T17:02:30,000 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2026-02-11T17:02:30,001 copying build/lib/galaxy/tools/bundled/sr_mapping/srma_wrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2026-02-11T17:02:30,003 copying build/lib/galaxy/tools/bundled/sr_mapping/fastq_statistics.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2026-02-11T17:02:30,006 copying build/lib/galaxy/tools/bundled/sr_mapping/mosaik.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2026-02-11T17:02:30,008 copying build/lib/galaxy/tools/bundled/sr_mapping/PerM.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2026-02-11T17:02:30,011 copying build/lib/galaxy/tools/bundled/sr_mapping/bfast_wrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2026-02-11T17:02:30,013 copying build/lib/galaxy/tools/bundled/sr_mapping/srma_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2026-02-11T17:02:30,016 copying build/lib/galaxy/tools/bundled/sr_mapping/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2026-02-11T17:02:30,017 copying build/lib/galaxy/tools/bundled/sr_mapping/bfast_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2026-02-11T17:02:30,020 copying build/lib/galaxy/tools/bundled/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled 2026-02-11T17:02:30,022 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme 2026-02-11T17:02:30,023 copying build/lib/galaxy/tools/bundled/meme/meme.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/meme 2026-02-11T17:02:30,026 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract 2026-02-11T17:02:30,027 copying build/lib/galaxy/tools/bundled/extract/liftOver_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/extract 2026-02-11T17:02:30,030 copying build/lib/galaxy/tools/bundled/extract/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/extract 2026-02-11T17:02:30,031 copying build/lib/galaxy/tools/bundled/extract/extract_genomic_dna.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/extract 2026-02-11T17:02:30,034 copying build/lib/galaxy/tools/bundled/extract/liftOver_wrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/extract 2026-02-11T17:02:30,036 copying build/lib/galaxy/tools/bundled/extract/extract_genomic_dna.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/extract 2026-02-11T17:02:30,039 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export 2026-02-11T17:02:30,040 copying build/lib/galaxy/tools/bundled/data_export/export_remote.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_export 2026-02-11T17:02:30,042 copying build/lib/galaxy/tools/bundled/data_export/export_remote.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_export 2026-02-11T17:02:30,045 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:30,046 copying build/lib/galaxy/tools/bundled/phenotype_association/ldtools_wrapper.sh -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:30,048 copying build/lib/galaxy/tools/bundled/phenotype_association/pagetag.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:30,051 copying build/lib/galaxy/tools/bundled/phenotype_association/pass_wrapper.sh -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:30,052 copying build/lib/galaxy/tools/bundled/phenotype_association/master2pg.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:30,054 copying build/lib/galaxy/tools/bundled/phenotype_association/sift_variants_wrapper.sh -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:30,057 copying build/lib/galaxy/tools/bundled/phenotype_association/master2pg.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:30,059 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToDavid.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:30,061 copying build/lib/galaxy/tools/bundled/phenotype_association/BEAM2_wrapper.sh -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:30,063 copying build/lib/galaxy/tools/bundled/phenotype_association/lped_to_geno.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:30,065 copying build/lib/galaxy/tools/bundled/phenotype_association/senatag.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:30,067 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToGProfile.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:30,069 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToGProfile.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:30,071 copying build/lib/galaxy/tools/bundled/phenotype_association/sift.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:30,073 copying build/lib/galaxy/tools/bundled/phenotype_association/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:30,075 copying build/lib/galaxy/tools/bundled/phenotype_association/gpass.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:30,077 copying build/lib/galaxy/tools/bundled/phenotype_association/mergeSnps.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:30,079 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToDavid.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:30,081 copying build/lib/galaxy/tools/bundled/phenotype_association/lps.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:30,084 copying build/lib/galaxy/tools/bundled/phenotype_association/lps_tool_wrapper.sh -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:30,086 copying build/lib/galaxy/tools/bundled/phenotype_association/master2gd_snp.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:30,089 copying build/lib/galaxy/tools/bundled/phenotype_association/master2gd_snp.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:30,091 copying build/lib/galaxy/tools/bundled/phenotype_association/gpass.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:30,093 copying build/lib/galaxy/tools/bundled/phenotype_association/beam.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:30,096 copying build/lib/galaxy/tools/bundled/phenotype_association/pass.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:30,098 copying build/lib/galaxy/tools/bundled/phenotype_association/ldtools.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-02-11T17:02:30,101 creating build/bdist.linux-armv7l/wheel/galaxy/tools/util 2026-02-11T17:02:30,102 copying build/lib/galaxy/tools/util/maf_utilities.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/util 2026-02-11T17:02:30,105 copying build/lib/galaxy/tools/util/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/util 2026-02-11T17:02:30,108 creating build/bdist.linux-armv7l/wheel/galaxy/tools/util/galaxyops 2026-02-11T17:02:30,109 copying build/lib/galaxy/tools/util/galaxyops/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/util/galaxyops 2026-02-11T17:02:30,111 copying build/lib/galaxy/tools/extract_dataset.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:30,113 copying build/lib/galaxy/tools/nest_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:30,115 copying build/lib/galaxy/tools/_types.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:30,118 copying build/lib/galaxy/tools/filter_null.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:30,120 creating build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2026-02-11T17:02:30,121 copying build/lib/galaxy/tools/parameters/dataset_matcher.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-02-11T17:02:30,123 copying build/lib/galaxy/tools/parameters/wrapped_json.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-02-11T17:02:30,126 copying build/lib/galaxy/tools/parameters/options.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-02-11T17:02:30,128 copying build/lib/galaxy/tools/parameters/workflow_utils.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-02-11T17:02:30,130 copying build/lib/galaxy/tools/parameters/input_translation.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-02-11T17:02:30,132 copying build/lib/galaxy/tools/parameters/populate_model.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-02-11T17:02:30,134 copying build/lib/galaxy/tools/parameters/wrapped.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-02-11T17:02:30,136 copying build/lib/galaxy/tools/parameters/meta.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-02-11T17:02:30,139 copying build/lib/galaxy/tools/parameters/sanitize.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-02-11T17:02:30,141 copying build/lib/galaxy/tools/parameters/validation.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-02-11T17:02:30,144 copying build/lib/galaxy/tools/parameters/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-02-11T17:02:30,147 copying build/lib/galaxy/tools/parameters/grouping.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-02-11T17:02:30,150 copying build/lib/galaxy/tools/parameters/dynamic_options.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-02-11T17:02:30,153 copying build/lib/galaxy/tools/parameters/basic.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-02-11T17:02:30,157 copying build/lib/galaxy/tools/parameters/cancelable_request.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-02-11T17:02:30,159 copying build/lib/galaxy/tools/build_list_1.2.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:30,161 copying build/lib/galaxy/tools/sample_sheet_to_tabular.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:30,163 copying build/lib/galaxy/tools/cross_product_nested.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:30,165 copying build/lib/galaxy/tools/duplicate_file_to_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:30,167 copying build/lib/galaxy/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:30,173 creating build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2026-02-11T17:02:30,175 copying build/lib/galaxy/tools/actions/upload.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2026-02-11T17:02:30,177 copying build/lib/galaxy/tools/actions/model_operations.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2026-02-11T17:02:30,179 copying build/lib/galaxy/tools/actions/data_source.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2026-02-11T17:02:30,181 copying build/lib/galaxy/tools/actions/upload_common.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2026-02-11T17:02:30,184 copying build/lib/galaxy/tools/actions/data_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2026-02-11T17:02:30,186 copying build/lib/galaxy/tools/actions/metadata.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2026-02-11T17:02:30,188 copying build/lib/galaxy/tools/actions/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2026-02-11T17:02:30,192 copying build/lib/galaxy/tools/actions/history_imp_exp.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2026-02-11T17:02:30,194 copying build/lib/galaxy/tools/exception_handling.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:30,196 copying build/lib/galaxy/tools/execution_helpers.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:30,198 copying build/lib/galaxy/tools/filter_empty_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:30,200 copying build/lib/galaxy/tools/tag_collection_from_file.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:30,202 copying build/lib/galaxy/tools/filter_failed_collection_1.1.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:30,204 copying build/lib/galaxy/tools/filter_null_1.1.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:30,206 copying build/lib/galaxy/tools/special_tools.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:30,208 copying build/lib/galaxy/tools/wrappers.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:30,211 copying build/lib/galaxy/tools/unzip_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:30,213 copying build/lib/galaxy/tools/sort_collection_list.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:30,216 copying build/lib/galaxy/tools/keep_success_collection_1.1.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:30,218 copying build/lib/galaxy/tools/split_paired_and_unpaired.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:30,220 copying build/lib/galaxy/tools/evaluation.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:30,223 copying build/lib/galaxy/tools/filter_empty_collection_1.1.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:30,225 copying build/lib/galaxy/tools/flatten_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:30,227 copying build/lib/galaxy/tools/zip_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:30,229 copying build/lib/galaxy/tools/filter_from_file_1.1.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:30,232 copying build/lib/galaxy/tools/errors.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:30,234 copying build/lib/galaxy/tools/data_fetch.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:30,236 copying build/lib/galaxy/tools/convert_sample_sheet.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:30,238 copying build/lib/galaxy/tools/execute.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:30,242 creating build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports 2026-02-11T17:02:30,243 creating build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2026-02-11T17:02:30,245 copying build/lib/galaxy/tools/error_reports/plugins/github.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-02-11T17:02:30,247 copying build/lib/galaxy/tools/error_reports/plugins/slack.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-02-11T17:02:30,249 copying build/lib/galaxy/tools/error_reports/plugins/influxdb.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-02-11T17:02:30,251 copying build/lib/galaxy/tools/error_reports/plugins/gitlab.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-02-11T17:02:30,254 copying build/lib/galaxy/tools/error_reports/plugins/json.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-02-11T17:02:30,256 copying build/lib/galaxy/tools/error_reports/plugins/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-02-11T17:02:30,258 copying build/lib/galaxy/tools/error_reports/plugins/base_git.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-02-11T17:02:30,260 copying build/lib/galaxy/tools/error_reports/plugins/email.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-02-11T17:02:30,262 copying build/lib/galaxy/tools/error_reports/plugins/sentry.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-02-11T17:02:30,264 copying build/lib/galaxy/tools/error_reports/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports 2026-02-11T17:02:30,266 copying build/lib/galaxy/tools/keep_success_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:30,269 creating build/bdist.linux-armv7l/wheel/galaxy/tools/data 2026-02-11T17:02:30,275 copying build/lib/galaxy/tools/data/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/data 2026-02-11T17:02:30,278 copying build/lib/galaxy/tools/apply_rules.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:30,279 copying build/lib/galaxy/tools/repositories.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:30,281 copying build/lib/galaxy/tools/harmonize_two_collections_list.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-02-11T17:02:30,285 creating build/bdist.linux-armv7l/wheel/galaxy/visualization 2026-02-11T17:02:30,286 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2026-02-11T17:02:30,288 copying build/lib/galaxy/visualization/plugins/resource_parser.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/plugins 2026-02-11T17:02:30,290 copying build/lib/galaxy/visualization/plugins/utils.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/plugins 2026-02-11T17:02:30,292 copying build/lib/galaxy/visualization/plugins/datasource_testing.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/plugins 2026-02-11T17:02:30,294 copying build/lib/galaxy/visualization/plugins/registry.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/plugins 2026-02-11T17:02:30,297 copying build/lib/galaxy/visualization/plugins/config_parser.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/plugins 2026-02-11T17:02:30,300 copying build/lib/galaxy/visualization/plugins/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/plugins 2026-02-11T17:02:30,301 copying build/lib/galaxy/visualization/plugins/plugin.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/plugins 2026-02-11T17:02:30,304 copying build/lib/galaxy/visualization/genomes.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization 2026-02-11T17:02:30,307 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/genome 2026-02-11T17:02:30,308 copying build/lib/galaxy/visualization/genome/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/genome 2026-02-11T17:02:30,311 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers 2026-02-11T17:02:30,312 copying build/lib/galaxy/visualization/data_providers/genome.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers 2026-02-11T17:02:30,315 copying build/lib/galaxy/visualization/data_providers/cigar.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers 2026-02-11T17:02:30,317 copying build/lib/galaxy/visualization/data_providers/registry.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers 2026-02-11T17:02:30,320 copying build/lib/galaxy/visualization/data_providers/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers 2026-02-11T17:02:30,321 copying build/lib/galaxy/visualization/data_providers/basic.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers 2026-02-11T17:02:30,324 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz 2026-02-11T17:02:30,325 copying build/lib/galaxy/visualization/data_providers/phyloviz/newickparser.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers/phyloviz 2026-02-11T17:02:30,327 copying build/lib/galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers/phyloviz 2026-02-11T17:02:30,329 copying build/lib/galaxy/visualization/data_providers/phyloviz/nexusparser.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers/phyloviz 2026-02-11T17:02:30,331 copying build/lib/galaxy/visualization/data_providers/phyloviz/baseparser.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers/phyloviz 2026-02-11T17:02:30,334 copying build/lib/galaxy/visualization/data_providers/phyloviz/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers/phyloviz 2026-02-11T17:02:30,335 copying build/lib/galaxy/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization 2026-02-11T17:02:30,338 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/tracks 2026-02-11T17:02:30,339 copying build/lib/galaxy/visualization/tracks/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/tracks 2026-02-11T17:02:30,341 copying build/lib/galaxy/main.py -> build/bdist.linux-armv7l/wheel/./galaxy 2026-02-11T17:02:30,343 creating build/bdist.linux-armv7l/wheel/galaxy_ext 2026-02-11T17:02:30,345 creating build/bdist.linux-armv7l/wheel/galaxy_ext/metadata 2026-02-11T17:02:30,346 copying build/lib/galaxy_ext/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy_ext/metadata 2026-02-11T17:02:30,348 copying build/lib/galaxy_ext/metadata/set_metadata.py -> build/bdist.linux-armv7l/wheel/./galaxy_ext/metadata 2026-02-11T17:02:30,350 creating build/bdist.linux-armv7l/wheel/galaxy_ext/container_monitor 2026-02-11T17:02:30,351 copying build/lib/galaxy_ext/container_monitor/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy_ext/container_monitor 2026-02-11T17:02:30,353 copying build/lib/galaxy_ext/container_monitor/monitor.py -> build/bdist.linux-armv7l/wheel/./galaxy_ext/container_monitor 2026-02-11T17:02:30,355 creating build/bdist.linux-armv7l/wheel/galaxy_ext/expressions 2026-02-11T17:02:30,356 copying build/lib/galaxy_ext/expressions/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy_ext/expressions 2026-02-11T17:02:30,364 copying build/lib/galaxy_ext/expressions/handle_job.py -> build/bdist.linux-armv7l/wheel/./galaxy_ext/expressions 2026-02-11T17:02:30,365 copying build/lib/galaxy_ext/py.typed -> build/bdist.linux-armv7l/wheel/./galaxy_ext 2026-02-11T17:02:30,367 copying build/lib/galaxy_ext/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy_ext 2026-02-11T17:02:30,368 running install_egg_info 2026-02-11T17:02:30,382 Copying galaxy_app.egg-info to build/bdist.linux-armv7l/wheel/./galaxy_app-25.1.1-py3.11.egg-info 2026-02-11T17:02:30,396 running install_scripts 2026-02-11T17:02:30,413 creating build/bdist.linux-armv7l/wheel/galaxy_app-25.1.1.dist-info/WHEEL 2026-02-11T17:02:30,415 creating '/tmp/pip-wheel-oy7vjxhh/.tmp-_tng4157/galaxy_app-25.1.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-02-11T17:02:30,418 adding 'galaxy/__init__.py' 2026-02-11T17:02:30,423 adding 'galaxy/app.py' 2026-02-11T17:02:30,425 adding 'galaxy/config_watchers.py' 2026-02-11T17:02:30,427 adding 'galaxy/di.py' 2026-02-11T17:02:30,429 adding 'galaxy/main.py' 2026-02-11T17:02:30,430 adding 'galaxy/main_config.py' 2026-02-11T17:02:30,431 adding 'galaxy/py.typed' 2026-02-11T17:02:30,433 adding 'galaxy/queue_worker.py' 2026-02-11T17:02:30,435 adding 'galaxy/queues.py' 2026-02-11T17:02:30,437 adding 'galaxy/structured_app.py' 2026-02-11T17:02:30,438 adding 'galaxy/actions/__init__.py' 2026-02-11T17:02:30,441 adding 'galaxy/actions/library.py' 2026-02-11T17:02:30,443 adding 'galaxy/app_unittest_utils/__init__.py' 2026-02-11T17:02:30,445 adding 'galaxy/app_unittest_utils/galaxy_mock.py' 2026-02-11T17:02:30,447 adding 'galaxy/app_unittest_utils/toolbox_support.py' 2026-02-11T17:02:30,449 adding 'galaxy/app_unittest_utils/tools_support.py' 2026-02-11T17:02:30,451 adding 'galaxy/authnz/__init__.py' 2026-02-11T17:02:30,454 adding 'galaxy/authnz/custos_authnz.py' 2026-02-11T17:02:30,456 adding 'galaxy/authnz/managers.py' 2026-02-11T17:02:30,460 adding 'galaxy/authnz/psa_authnz.py' 2026-02-11T17:02:30,462 adding 'galaxy/authnz/tapis.py' 2026-02-11T17:02:30,463 adding 'galaxy/authnz/util.py' 2026-02-11T17:02:30,465 adding 'galaxy/carbon_emissions/__init__.py' 2026-02-11T17:02:30,467 adding 'galaxy/carbon_emissions/carbon_intensity.csv' 2026-02-11T17:02:30,469 adding 'galaxy/celery/__init__.py' 2026-02-11T17:02:30,471 adding 'galaxy/celery/_serialization.py' 2026-02-11T17:02:30,472 adding 'galaxy/celery/base_task.py' 2026-02-11T17:02:30,475 adding 'galaxy/celery/tasks.py' 2026-02-11T17:02:30,478 adding 'galaxy/dependencies/__init__.py' 2026-02-11T17:02:30,479 adding 'galaxy/dependencies/conditional-requirements.txt' 2026-02-11T17:02:30,481 adding 'galaxy/dependencies/dev-requirements.txt' 2026-02-11T17:02:30,482 adding 'galaxy/dependencies/lint-requirements.txt' 2026-02-11T17:02:30,483 adding 'galaxy/dependencies/pinned-lint-requirements.txt' 2026-02-11T17:02:30,485 adding 'galaxy/dependencies/pinned-requirements.txt' 2026-02-11T17:02:30,487 adding 'galaxy/dependencies/pinned-test-requirements.txt' 2026-02-11T17:02:30,488 adding 'galaxy/dependencies/pinned-typecheck-requirements.txt' 2026-02-11T17:02:30,490 adding 'galaxy/dependencies/script.py' 2026-02-11T17:02:30,491 adding 'galaxy/dependencies/update.sh' 2026-02-11T17:02:30,492 adding 'galaxy/dependencies/update_lint_requirements.sh' 2026-02-11T17:02:30,494 adding 'galaxy/forms/__init__.py' 2026-02-11T17:02:30,496 adding 'galaxy/forms/forms.py' 2026-02-11T17:02:30,513 adding 'galaxy/jobs/__init__.py' 2026-02-11T17:02:30,517 adding 'galaxy/jobs/command_factory.py' 2026-02-11T17:02:30,525 adding 'galaxy/jobs/dynamic_tool_destination.py' 2026-02-11T17:02:30,533 adding 'galaxy/jobs/handler.py' 2026-02-11T17:02:30,534 adding 'galaxy/jobs/manager.py' 2026-02-11T17:02:30,536 adding 'galaxy/jobs/mapper.py' 2026-02-11T17:02:30,538 adding 'galaxy/jobs/rule_helper.py' 2026-02-11T17:02:30,540 adding 'galaxy/jobs/stock_rules.py' 2026-02-11T17:02:30,541 adding 'galaxy/jobs/rules/__init__.py' 2026-02-11T17:02:30,547 adding 'galaxy/jobs/runners/__init__.py' 2026-02-11T17:02:30,551 adding 'galaxy/jobs/runners/aws.py' 2026-02-11T17:02:30,553 adding 'galaxy/jobs/runners/chronos.py' 2026-02-11T17:02:30,555 adding 'galaxy/jobs/runners/cli.py' 2026-02-11T17:02:30,557 adding 'galaxy/jobs/runners/condor.py' 2026-02-11T17:02:30,560 adding 'galaxy/jobs/runners/drmaa.py' 2026-02-11T17:02:30,563 adding 'galaxy/jobs/runners/godocker.py' 2026-02-11T17:02:30,569 adding 'galaxy/jobs/runners/kubernetes.py' 2026-02-11T17:02:30,572 adding 'galaxy/jobs/runners/local.py' 2026-02-11T17:02:30,575 adding 'galaxy/jobs/runners/pbs.py' 2026-02-11T17:02:30,582 adding 'galaxy/jobs/runners/pulsar.py' 2026-02-11T17:02:30,584 adding 'galaxy/jobs/runners/slurm.py' 2026-02-11T17:02:30,585 adding 'galaxy/jobs/runners/state_handler_factory.py' 2026-02-11T17:02:30,587 adding 'galaxy/jobs/runners/tasks.py' 2026-02-11T17:02:30,591 adding 'galaxy/jobs/runners/univa.py' 2026-02-11T17:02:30,593 adding 'galaxy/jobs/runners/state_handlers/__init__.py' 2026-02-11T17:02:30,595 adding 'galaxy/jobs/runners/state_handlers/_safe_eval.py' 2026-02-11T17:02:30,597 adding 'galaxy/jobs/runners/state_handlers/resubmit.py' 2026-02-11T17:02:30,599 adding 'galaxy/jobs/runners/util/__init__.py' 2026-02-11T17:02:30,601 adding 'galaxy/jobs/runners/util/env.py' 2026-02-11T17:02:30,603 adding 'galaxy/jobs/runners/util/external.py' 2026-02-11T17:02:30,604 adding 'galaxy/jobs/runners/util/fork_safe_write.py' 2026-02-11T17:02:30,606 adding 'galaxy/jobs/runners/util/kill.py' 2026-02-11T17:02:30,607 adding 'galaxy/jobs/runners/util/process_groups.py' 2026-02-11T17:02:30,610 adding 'galaxy/jobs/runners/util/pykube_util.py' 2026-02-11T17:02:30,612 adding 'galaxy/jobs/runners/util/sudo.py' 2026-02-11T17:02:30,614 adding 'galaxy/jobs/runners/util/cli/__init__.py' 2026-02-11T17:02:30,616 adding 'galaxy/jobs/runners/util/cli/factory.py' 2026-02-11T17:02:30,618 adding 'galaxy/jobs/runners/util/cli/job/__init__.py' 2026-02-11T17:02:30,620 adding 'galaxy/jobs/runners/util/cli/job/lsf.py' 2026-02-11T17:02:30,622 adding 'galaxy/jobs/runners/util/cli/job/pbs.py' 2026-02-11T17:02:30,624 adding 'galaxy/jobs/runners/util/cli/job/slurm.py' 2026-02-11T17:02:30,626 adding 'galaxy/jobs/runners/util/cli/job/slurm_torque.py' 2026-02-11T17:02:30,627 adding 'galaxy/jobs/runners/util/cli/job/torque.py' 2026-02-11T17:02:30,630 adding 'galaxy/jobs/runners/util/cli/shell/__init__.py' 2026-02-11T17:02:30,631 adding 'galaxy/jobs/runners/util/cli/shell/local.py' 2026-02-11T17:02:30,633 adding 'galaxy/jobs/runners/util/cli/shell/rsh.py' 2026-02-11T17:02:30,636 adding 'galaxy/jobs/runners/util/condor/__init__.py' 2026-02-11T17:02:30,638 adding 'galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh' 2026-02-11T17:02:30,640 adding 'galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh' 2026-02-11T17:02:30,641 adding 'galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh' 2026-02-11T17:02:30,644 adding 'galaxy/jobs/runners/util/job_script/__init__.py' 2026-02-11T17:02:30,646 adding 'galaxy/jobs/splitters/__init__.py' 2026-02-11T17:02:30,648 adding 'galaxy/jobs/splitters/basic.py' 2026-02-11T17:02:30,650 adding 'galaxy/jobs/splitters/multi.py' 2026-02-11T17:02:30,653 adding 'galaxy/managers/__init__.py' 2026-02-11T17:02:30,657 adding 'galaxy/managers/_config_templates.py' 2026-02-11T17:02:30,659 adding 'galaxy/managers/annotatable.py' 2026-02-11T17:02:30,661 adding 'galaxy/managers/api_keys.py' 2026-02-11T17:02:30,672 adding 'galaxy/managers/base.py' 2026-02-11T17:02:30,674 adding 'galaxy/managers/chat.py' 2026-02-11T17:02:30,676 adding 'galaxy/managers/citations.py' 2026-02-11T17:02:30,683 adding 'galaxy/managers/collections.py' 2026-02-11T17:02:30,686 adding 'galaxy/managers/collections_util.py' 2026-02-11T17:02:30,689 adding 'galaxy/managers/configuration.py' 2026-02-11T17:02:30,692 adding 'galaxy/managers/context.py' 2026-02-11T17:02:30,695 adding 'galaxy/managers/credentials.py' 2026-02-11T17:02:30,700 adding 'galaxy/managers/datasets.py' 2026-02-11T17:02:30,703 adding 'galaxy/managers/datatypes.py' 2026-02-11T17:02:30,704 adding 'galaxy/managers/dbkeys.py' 2026-02-11T17:02:30,706 adding 'galaxy/managers/deletable.py' 2026-02-11T17:02:30,707 adding 'galaxy/managers/display_applications.py' 2026-02-11T17:02:30,709 adding 'galaxy/managers/executables.py' 2026-02-11T17:02:30,710 adding 'galaxy/managers/export_tracker.py' 2026-02-11T17:02:30,714 adding 'galaxy/managers/file_source_instances.py' 2026-02-11T17:02:30,717 adding 'galaxy/managers/folders.py' 2026-02-11T17:02:30,718 adding 'galaxy/managers/forms.py' 2026-02-11T17:02:30,720 adding 'galaxy/managers/genomes.py' 2026-02-11T17:02:30,721 adding 'galaxy/managers/group_roles.py' 2026-02-11T17:02:30,722 adding 'galaxy/managers/group_users.py' 2026-02-11T17:02:30,724 adding 'galaxy/managers/groups.py' 2026-02-11T17:02:30,727 adding 'galaxy/managers/hdas.py' 2026-02-11T17:02:30,729 adding 'galaxy/managers/hdcas.py' 2026-02-11T17:02:30,734 adding 'galaxy/managers/histories.py' 2026-02-11T17:02:30,738 adding 'galaxy/managers/history_contents.py' 2026-02-11T17:02:30,740 adding 'galaxy/managers/interactivetool.py' 2026-02-11T17:02:30,742 adding 'galaxy/managers/item_tags.py' 2026-02-11T17:02:30,743 adding 'galaxy/managers/job_connections.py' 2026-02-11T17:02:30,752 adding 'galaxy/managers/jobs.py' 2026-02-11T17:02:30,755 adding 'galaxy/managers/landing.py' 2026-02-11T17:02:30,756 adding 'galaxy/managers/lddas.py' 2026-02-11T17:02:30,759 adding 'galaxy/managers/libraries.py' 2026-02-11T17:02:30,761 adding 'galaxy/managers/library_datasets.py' 2026-02-11T17:02:30,772 adding 'galaxy/managers/licenses.json' 2026-02-11T17:02:30,775 adding 'galaxy/managers/licenses.py' 2026-02-11T17:02:30,776 adding 'galaxy/managers/markdown_export_base.css' 2026-02-11T17:02:30,778 adding 'galaxy/managers/markdown_parse.py' 2026-02-11T17:02:30,784 adding 'galaxy/managers/markdown_util.py' 2026-02-11T17:02:30,786 adding 'galaxy/managers/metrics.py' 2026-02-11T17:02:30,789 adding 'galaxy/managers/model_stores.py' 2026-02-11T17:02:30,792 adding 'galaxy/managers/notification.py' 2026-02-11T17:02:30,795 adding 'galaxy/managers/object_store_instances.py' 2026-02-11T17:02:30,798 adding 'galaxy/managers/pages.py' 2026-02-11T17:02:30,800 adding 'galaxy/managers/quotas.py' 2026-02-11T17:02:30,801 adding 'galaxy/managers/ratable.py' 2026-02-11T17:02:30,803 adding 'galaxy/managers/rbac_secured.py' 2026-02-11T17:02:30,805 adding 'galaxy/managers/remote_files.py' 2026-02-11T17:02:30,807 adding 'galaxy/managers/roles.py' 2026-02-11T17:02:30,808 adding 'galaxy/managers/secured.py' 2026-02-11T17:02:30,809 adding 'galaxy/managers/session.py' 2026-02-11T17:02:30,812 adding 'galaxy/managers/sharable.py' 2026-02-11T17:02:30,814 adding 'galaxy/managers/taggable.py' 2026-02-11T17:02:30,815 adding 'galaxy/managers/tags.py' 2026-02-11T17:02:30,816 adding 'galaxy/managers/tasks.py' 2026-02-11T17:02:30,818 adding 'galaxy/managers/tool_data.py' 2026-02-11T17:02:30,820 adding 'galaxy/managers/tools.py' 2026-02-11T17:02:30,822 adding 'galaxy/managers/tours.py' 2026-02-11T17:02:30,828 adding 'galaxy/managers/users.py' 2026-02-11T17:02:30,830 adding 'galaxy/managers/visualizations.py' 2026-02-11T17:02:30,842 adding 'galaxy/managers/workflows.py' 2026-02-11T17:02:30,845 adding 'galaxy/short_term_storage/__init__.py' 2026-02-11T17:02:30,847 adding 'galaxy/tool_shed/__init__.py' 2026-02-11T17:02:30,848 adding 'galaxy/tool_shed/cache.py' 2026-02-11T17:02:30,850 adding 'galaxy/tool_shed/repository_type.py' 2026-02-11T17:02:30,851 adding 'galaxy/tool_shed/galaxy_install/__init__.py' 2026-02-11T17:02:30,853 adding 'galaxy/tool_shed/galaxy_install/client.py' 2026-02-11T17:02:30,858 adding 'galaxy/tool_shed/galaxy_install/install_manager.py' 2026-02-11T17:02:30,864 adding 'galaxy/tool_shed/galaxy_install/installed_repository_manager.py' 2026-02-11T17:02:30,866 adding 'galaxy/tool_shed/galaxy_install/update_repository_manager.py' 2026-02-11T17:02:30,868 adding 'galaxy/tool_shed/galaxy_install/metadata/__init__.py' 2026-02-11T17:02:30,870 adding 'galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py' 2026-02-11T17:02:30,872 adding 'galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py' 2026-02-11T17:02:30,876 adding 'galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py' 2026-02-11T17:02:30,878 adding 'galaxy/tool_shed/galaxy_install/tools/__init__.py' 2026-02-11T17:02:30,880 adding 'galaxy/tool_shed/galaxy_install/tools/data_manager.py' 2026-02-11T17:02:30,883 adding 'galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py' 2026-02-11T17:02:30,885 adding 'galaxy/tool_shed/metadata/__init__.py' 2026-02-11T17:02:30,891 adding 'galaxy/tool_shed/metadata/metadata_generator.py' 2026-02-11T17:02:30,893 adding 'galaxy/tool_shed/tools/__init__.py' 2026-02-11T17:02:30,894 adding 'galaxy/tool_shed/tools/data_table_manager.py' 2026-02-11T17:02:30,896 adding 'galaxy/tool_shed/tools/tool_validator.py' 2026-02-11T17:02:30,898 adding 'galaxy/tool_shed/unittest_utils/__init__.py' 2026-02-11T17:02:30,900 adding 'galaxy/tool_shed/util/__init__.py' 2026-02-11T17:02:30,901 adding 'galaxy/tool_shed/util/basic_util.py' 2026-02-11T17:02:30,902 adding 'galaxy/tool_shed/util/container_util.py' 2026-02-11T17:02:30,904 adding 'galaxy/tool_shed/util/dependency_display.py' 2026-02-11T17:02:30,906 adding 'galaxy/tool_shed/util/hg_util.py' 2026-02-11T17:02:30,908 adding 'galaxy/tool_shed/util/metadata_util.py' 2026-02-11T17:02:30,911 adding 'galaxy/tool_shed/util/repository_util.py' 2026-02-11T17:02:30,913 adding 'galaxy/tool_shed/util/shed_util_common.py' 2026-02-11T17:02:30,915 adding 'galaxy/tool_shed/util/tool_dependency_util.py' 2026-02-11T17:02:30,917 adding 'galaxy/tool_shed/util/tool_util.py' 2026-02-11T17:02:30,921 adding 'galaxy/tool_shed/util/utility_container_manager.py' 2026-02-11T17:02:30,947 adding 'galaxy/tools/__init__.py' 2026-02-11T17:02:30,950 adding 'galaxy/tools/_types.py' 2026-02-11T17:02:30,951 adding 'galaxy/tools/apply_rules.xml' 2026-02-11T17:02:30,952 adding 'galaxy/tools/biotools.py' 2026-02-11T17:02:30,954 adding 'galaxy/tools/build_list.xml' 2026-02-11T17:02:30,955 adding 'galaxy/tools/build_list_1.2.0.xml' 2026-02-11T17:02:30,957 adding 'galaxy/tools/cache.py' 2026-02-11T17:02:30,958 adding 'galaxy/tools/convert_sample_sheet.xml' 2026-02-11T17:02:30,960 adding 'galaxy/tools/cross_product_flat.xml' 2026-02-11T17:02:30,961 adding 'galaxy/tools/cross_product_nested.xml' 2026-02-11T17:02:30,965 adding 'galaxy/tools/data_fetch.py' 2026-02-11T17:02:30,966 adding 'galaxy/tools/data_fetch.xml' 2026-02-11T17:02:30,968 adding 'galaxy/tools/duplicate_file_to_collection.xml' 2026-02-11T17:02:30,969 adding 'galaxy/tools/errors.py' 2026-02-11T17:02:30,975 adding 'galaxy/tools/evaluation.py' 2026-02-11T17:02:30,977 adding 'galaxy/tools/exception_handling.py' 2026-02-11T17:02:30,981 adding 'galaxy/tools/execute.py' 2026-02-11T17:02:30,983 adding 'galaxy/tools/execution_helpers.py' 2026-02-11T17:02:30,984 adding 'galaxy/tools/extract_dataset.xml' 2026-02-11T17:02:30,986 adding 'galaxy/tools/filter_empty_collection.xml' 2026-02-11T17:02:30,987 adding 'galaxy/tools/filter_empty_collection_1.1.0.xml' 2026-02-11T17:02:30,988 adding 'galaxy/tools/filter_failed_collection.xml' 2026-02-11T17:02:30,990 adding 'galaxy/tools/filter_failed_collection_1.1.0.xml' 2026-02-11T17:02:30,991 adding 'galaxy/tools/filter_from_file.xml' 2026-02-11T17:02:30,993 adding 'galaxy/tools/filter_from_file_1.1.0.xml' 2026-02-11T17:02:30,994 adding 'galaxy/tools/filter_null.xml' 2026-02-11T17:02:30,995 adding 'galaxy/tools/filter_null_1.1.0.xml' 2026-02-11T17:02:30,997 adding 'galaxy/tools/flatten_collection.xml' 2026-02-11T17:02:30,998 adding 'galaxy/tools/harmonize_two_collections_list.xml' 2026-02-11T17:02:31,000 adding 'galaxy/tools/keep_success_collection.xml' 2026-02-11T17:02:31,001 adding 'galaxy/tools/keep_success_collection_1.1.0.xml' 2026-02-11T17:02:31,003 adding 'galaxy/tools/merge_collection.xml' 2026-02-11T17:02:31,004 adding 'galaxy/tools/model_operation_macros.xml' 2026-02-11T17:02:31,006 adding 'galaxy/tools/nest_collection.xml' 2026-02-11T17:02:31,009 adding 'galaxy/tools/recommendations.py' 2026-02-11T17:02:31,010 adding 'galaxy/tools/relabel_from_file.xml' 2026-02-11T17:02:31,012 adding 'galaxy/tools/remote_tool_eval.py' 2026-02-11T17:02:31,014 adding 'galaxy/tools/repositories.py' 2026-02-11T17:02:31,015 adding 'galaxy/tools/sample_sheet_to_tabular.xml' 2026-02-11T17:02:31,017 adding 'galaxy/tools/sort_collection_list.xml' 2026-02-11T17:02:31,018 adding 'galaxy/tools/special_tools.py' 2026-02-11T17:02:31,019 adding 'galaxy/tools/split_paired_and_unpaired.xml' 2026-02-11T17:02:31,020 adding 'galaxy/tools/stock.py' 2026-02-11T17:02:31,022 adding 'galaxy/tools/tag_collection_from_file.xml' 2026-02-11T17:02:31,023 adding 'galaxy/tools/unzip_collection.xml' 2026-02-11T17:02:31,027 adding 'galaxy/tools/wrappers.py' 2026-02-11T17:02:31,028 adding 'galaxy/tools/zip_collection.xml' 2026-02-11T17:02:31,037 adding 'galaxy/tools/actions/__init__.py' 2026-02-11T17:02:31,039 adding 'galaxy/tools/actions/data_manager.py' 2026-02-11T17:02:31,040 adding 'galaxy/tools/actions/data_source.py' 2026-02-11T17:02:31,042 adding 'galaxy/tools/actions/history_imp_exp.py' 2026-02-11T17:02:31,043 adding 'galaxy/tools/actions/metadata.py' 2026-02-11T17:02:31,045 adding 'galaxy/tools/actions/model_operations.py' 2026-02-11T17:02:31,047 adding 'galaxy/tools/actions/upload.py' 2026-02-11T17:02:31,050 adding 'galaxy/tools/actions/upload_common.py' 2026-02-11T17:02:31,052 adding 'galaxy/tools/bundled/__init__.py' 2026-02-11T17:02:31,053 adding 'galaxy/tools/bundled/data_export/export_remote.py' 2026-02-11T17:02:31,055 adding 'galaxy/tools/bundled/data_export/export_remote.xml' 2026-02-11T17:02:31,057 adding 'galaxy/tools/bundled/data_source/__init__.py' 2026-02-11T17:02:31,058 adding 'galaxy/tools/bundled/data_source/access_libraries.xml' 2026-02-11T17:02:31,060 adding 'galaxy/tools/bundled/data_source/biomart.xml' 2026-02-11T17:02:31,061 adding 'galaxy/tools/bundled/data_source/biomart_test.xml' 2026-02-11T17:02:31,062 adding 'galaxy/tools/bundled/data_source/cbi_rice_mart.xml' 2026-02-11T17:02:31,064 adding 'galaxy/tools/bundled/data_source/data_source.py' 2026-02-11T17:02:31,065 adding 'galaxy/tools/bundled/data_source/diced.xml' 2026-02-11T17:02:31,066 adding 'galaxy/tools/bundled/data_source/ebi_sra.xml' 2026-02-11T17:02:31,067 adding 'galaxy/tools/bundled/data_source/eupathdb.xml' 2026-02-11T17:02:31,069 adding 'galaxy/tools/bundled/data_source/fly_modencode.xml' 2026-02-11T17:02:31,070 adding 'galaxy/tools/bundled/data_source/flymine.xml' 2026-02-11T17:02:31,071 adding 'galaxy/tools/bundled/data_source/flymine_test.xml' 2026-02-11T17:02:31,073 adding 'galaxy/tools/bundled/data_source/genbank.py' 2026-02-11T17:02:31,074 adding 'galaxy/tools/bundled/data_source/genbank.xml' 2026-02-11T17:02:31,075 adding 'galaxy/tools/bundled/data_source/gramene_mart.xml' 2026-02-11T17:02:31,076 adding 'galaxy/tools/bundled/data_source/hapmapmart.xml' 2026-02-11T17:02:31,078 adding 'galaxy/tools/bundled/data_source/hbvar.xml' 2026-02-11T17:02:31,079 adding 'galaxy/tools/bundled/data_source/import.py' 2026-02-11T17:02:31,081 adding 'galaxy/tools/bundled/data_source/import.xml' 2026-02-11T17:02:31,082 adding 'galaxy/tools/bundled/data_source/intermine.xml' 2026-02-11T17:02:31,083 adding 'galaxy/tools/bundled/data_source/metabolicmine.xml' 2026-02-11T17:02:31,085 adding 'galaxy/tools/bundled/data_source/microbial_import.py' 2026-02-11T17:02:31,086 adding 'galaxy/tools/bundled/data_source/microbial_import.xml' 2026-02-11T17:02:31,088 adding 'galaxy/tools/bundled/data_source/microbial_import_code.py' 2026-02-11T17:02:31,089 adding 'galaxy/tools/bundled/data_source/modmine.xml' 2026-02-11T17:02:31,090 adding 'galaxy/tools/bundled/data_source/mousemine.xml' 2026-02-11T17:02:31,091 adding 'galaxy/tools/bundled/data_source/ncbi_datasets.xml' 2026-02-11T17:02:31,093 adding 'galaxy/tools/bundled/data_source/ratmine.xml' 2026-02-11T17:02:31,094 adding 'galaxy/tools/bundled/data_source/sra.xml' 2026-02-11T17:02:31,095 adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml' 2026-02-11T17:02:31,097 adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml' 2026-02-11T17:02:31,098 adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml' 2026-02-11T17:02:31,100 adding 'galaxy/tools/bundled/data_source/upload.py' 2026-02-11T17:02:31,102 adding 'galaxy/tools/bundled/data_source/upload.xml' 2026-02-11T17:02:31,104 adding 'galaxy/tools/bundled/data_source/worm_modencode.xml' 2026-02-11T17:02:31,105 adding 'galaxy/tools/bundled/data_source/wormbase.xml' 2026-02-11T17:02:31,106 adding 'galaxy/tools/bundled/data_source/wormbase_test.xml' 2026-02-11T17:02:31,107 adding 'galaxy/tools/bundled/data_source/yeastmine.xml' 2026-02-11T17:02:31,108 adding 'galaxy/tools/bundled/data_source/zebrafishmine.xml' 2026-02-11T17:02:31,110 adding 'galaxy/tools/bundled/expression_tools/expression_macros.xml' 2026-02-11T17:02:31,111 adding 'galaxy/tools/bundled/expression_tools/parse_values_from_file.xml' 2026-02-11T17:02:31,113 adding 'galaxy/tools/bundled/expression_tools/pick_value.xml' 2026-02-11T17:02:31,115 adding 'galaxy/tools/bundled/extract/__init__.py' 2026-02-11T17:02:31,117 adding 'galaxy/tools/bundled/extract/extract_genomic_dna.py' 2026-02-11T17:02:31,118 adding 'galaxy/tools/bundled/extract/extract_genomic_dna.xml' 2026-02-11T17:02:31,120 adding 'galaxy/tools/bundled/extract/liftOver_wrapper.py' 2026-02-11T17:02:31,121 adding 'galaxy/tools/bundled/extract/liftOver_wrapper.xml' 2026-02-11T17:02:31,124 adding 'galaxy/tools/bundled/filters/CreateInterval.pl' 2026-02-11T17:02:31,125 adding 'galaxy/tools/bundled/filters/CreateInterval.xml' 2026-02-11T17:02:31,126 adding 'galaxy/tools/bundled/filters/__init__.py' 2026-02-11T17:02:31,128 adding 'galaxy/tools/bundled/filters/axt_to_concat_fasta.py' 2026-02-11T17:02:31,129 adding 'galaxy/tools/bundled/filters/axt_to_concat_fasta.xml' 2026-02-11T17:02:31,130 adding 'galaxy/tools/bundled/filters/axt_to_fasta.py' 2026-02-11T17:02:31,131 adding 'galaxy/tools/bundled/filters/axt_to_fasta.xml' 2026-02-11T17:02:31,133 adding 'galaxy/tools/bundled/filters/axt_to_lav.py' 2026-02-11T17:02:31,134 adding 'galaxy/tools/bundled/filters/axt_to_lav.xml' 2026-02-11T17:02:31,136 adding 'galaxy/tools/bundled/filters/axt_to_lav_code.py' 2026-02-11T17:02:31,137 adding 'galaxy/tools/bundled/filters/bed2gff.xml' 2026-02-11T17:02:31,138 adding 'galaxy/tools/bundled/filters/bed_to_bigbed.xml' 2026-02-11T17:02:31,140 adding 'galaxy/tools/bundled/filters/bed_to_gff_converter.py' 2026-02-11T17:02:31,141 adding 'galaxy/tools/bundled/filters/catWrapper.xml' 2026-02-11T17:02:31,142 adding 'galaxy/tools/bundled/filters/changeCase.pl' 2026-02-11T17:02:31,144 adding 'galaxy/tools/bundled/filters/changeCase.xml' 2026-02-11T17:02:31,145 adding 'galaxy/tools/bundled/filters/commWrapper.pl' 2026-02-11T17:02:31,146 adding 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'galaxy/tools/bundled/filters/gff_to_bed_converter.py' 2026-02-11T17:02:31,164 adding 'galaxy/tools/bundled/filters/grep.xml' 2026-02-11T17:02:31,166 adding 'galaxy/tools/bundled/filters/grep_1.0.1.xml' 2026-02-11T17:02:31,167 adding 'galaxy/tools/bundled/filters/gtf2bedgraph.xml' 2026-02-11T17:02:31,169 adding 'galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py' 2026-02-11T17:02:31,170 adding 'galaxy/tools/bundled/filters/headWrapper.xml' 2026-02-11T17:02:31,172 adding 'galaxy/tools/bundled/filters/join.py' 2026-02-11T17:02:31,174 adding 'galaxy/tools/bundled/filters/joiner.xml' 2026-02-11T17:02:31,175 adding 'galaxy/tools/bundled/filters/joiner2.xml' 2026-02-11T17:02:31,177 adding 'galaxy/tools/bundled/filters/lav_to_bed.py' 2026-02-11T17:02:31,178 adding 'galaxy/tools/bundled/filters/lav_to_bed.xml' 2026-02-11T17:02:31,179 adding 'galaxy/tools/bundled/filters/lav_to_bed_code.py' 2026-02-11T17:02:31,180 adding 'galaxy/tools/bundled/filters/mergeCols.py' 2026-02-11T17:02:31,181 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'galaxy/tools/bundled/filters/trimmer.py' 2026-02-11T17:02:31,204 adding 'galaxy/tools/bundled/filters/trimmer.xml' 2026-02-11T17:02:31,205 adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py' 2026-02-11T17:02:31,207 adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.xml' 2026-02-11T17:02:31,208 adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.py' 2026-02-11T17:02:31,209 adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.xml' 2026-02-11T17:02:31,211 adding 'galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py' 2026-02-11T17:02:31,212 adding 'galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.xml' 2026-02-11T17:02:31,214 adding 'galaxy/tools/bundled/filters/uniq.py' 2026-02-11T17:02:31,215 adding 'galaxy/tools/bundled/filters/uniq.xml' 2026-02-11T17:02:31,216 adding 'galaxy/tools/bundled/filters/wc_gnu.xml' 2026-02-11T17:02:31,218 adding 'galaxy/tools/bundled/filters/wig_to_bigwig.xml' 2026-02-11T17:02:31,219 adding 'galaxy/tools/bundled/filters/wiggle_to_simple.py' 2026-02-11T17:02:31,220 adding 'galaxy/tools/bundled/filters/wiggle_to_simple.xml' 2026-02-11T17:02:31,222 adding 'galaxy/tools/bundled/filters/gff/__init__.py' 2026-02-11T17:02:31,224 adding 'galaxy/tools/bundled/filters/gff/extract_GFF_Features.py' 2026-02-11T17:02:31,225 adding 'galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml' 2026-02-11T17:02:31,227 adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py' 2026-02-11T17:02:31,228 adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml' 2026-02-11T17:02:31,230 adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py' 2026-02-11T17:02:31,231 adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml' 2026-02-11T17:02:31,233 adding 'galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py' 2026-02-11T17:02:31,234 adding 'galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml' 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'galaxy/tools/bundled/plotting/boxplot.xml' 2026-02-11T17:02:31,427 adding 'galaxy/tools/bundled/solid_tools/__init__.py' 2026-02-11T17:02:31,429 adding 'galaxy/tools/bundled/solid_tools/maq_cs_wrapper.py' 2026-02-11T17:02:31,430 adding 'galaxy/tools/bundled/solid_tools/maq_cs_wrapper.xml' 2026-02-11T17:02:31,432 adding 'galaxy/tools/bundled/solid_tools/maq_cs_wrapper_code.py' 2026-02-11T17:02:31,433 adding 'galaxy/tools/bundled/solid_tools/qualsolid_boxplot_graph.sh' 2026-02-11T17:02:31,435 adding 'galaxy/tools/bundled/solid_tools/solid_qual_boxplot.xml' 2026-02-11T17:02:31,436 adding 'galaxy/tools/bundled/solid_tools/solid_qual_stats.py' 2026-02-11T17:02:31,438 adding 'galaxy/tools/bundled/solid_tools/solid_qual_stats.xml' 2026-02-11T17:02:31,440 adding 'galaxy/tools/bundled/sr_assembly/__init__.py' 2026-02-11T17:02:31,442 adding 'galaxy/tools/bundled/sr_assembly/velvetg.xml' 2026-02-11T17:02:31,444 adding 'galaxy/tools/bundled/sr_assembly/velvetg_wrapper.py' 2026-02-11T17:02:31,445 adding 'galaxy/tools/bundled/sr_assembly/velveth.xml' 2026-02-11T17:02:31,447 adding 'galaxy/tools/bundled/sr_assembly/velveth_wrapper.py' 2026-02-11T17:02:31,450 adding 'galaxy/tools/bundled/sr_mapping/PerM.xml' 2026-02-11T17:02:31,451 adding 'galaxy/tools/bundled/sr_mapping/__init__.py' 2026-02-11T17:02:31,454 adding 'galaxy/tools/bundled/sr_mapping/bfast_wrapper.py' 2026-02-11T17:02:31,457 adding 'galaxy/tools/bundled/sr_mapping/bfast_wrapper.xml' 2026-02-11T17:02:31,459 adding 'galaxy/tools/bundled/sr_mapping/fastq_statistics.xml' 2026-02-11T17:02:31,461 adding 'galaxy/tools/bundled/sr_mapping/mosaik.xml' 2026-02-11T17:02:31,464 adding 'galaxy/tools/bundled/sr_mapping/srma_wrapper.py' 2026-02-11T17:02:31,466 adding 'galaxy/tools/bundled/sr_mapping/srma_wrapper.xml' 2026-02-11T17:02:31,467 adding 'galaxy/tools/bundled/stats/__init__.py' 2026-02-11T17:02:31,469 adding 'galaxy/tools/bundled/stats/aggregate_binned_scores_in_intervals.xml' 2026-02-11T17:02:31,471 adding 'galaxy/tools/bundled/stats/aggregate_scores_in_intervals.py' 2026-02-11T17:02:31,472 adding 'galaxy/tools/bundled/stats/filtering.py' 2026-02-11T17:02:31,474 adding 'galaxy/tools/bundled/stats/filtering.xml' 2026-02-11T17:02:31,475 adding 'galaxy/tools/bundled/stats/filtering_1_1_0.xml' 2026-02-11T17:02:31,477 adding 'galaxy/tools/bundled/stats/grouping.py' 2026-02-11T17:02:31,479 adding 'galaxy/tools/bundled/stats/grouping.xml' 2026-02-11T17:02:31,480 adding 'galaxy/tools/bundled/stats/gsummary.py' 2026-02-11T17:02:31,482 adding 'galaxy/tools/bundled/stats/gsummary.xml' 2026-02-11T17:02:31,483 adding 'galaxy/tools/bundled/stats/r_wrapper.sh' 2026-02-11T17:02:31,485 adding 'galaxy/tools/data/__init__.py' 2026-02-11T17:02:31,487 adding 'galaxy/tools/data_manager/__init__.py' 2026-02-11T17:02:31,489 adding 'galaxy/tools/data_manager/manager.py' 2026-02-11T17:02:31,491 adding 'galaxy/tools/error_reports/__init__.py' 2026-02-11T17:02:31,493 adding 'galaxy/tools/error_reports/plugins/__init__.py' 2026-02-11T17:02:31,494 adding 'galaxy/tools/error_reports/plugins/base_git.py' 2026-02-11T17:02:31,496 adding 'galaxy/tools/error_reports/plugins/email.py' 2026-02-11T17:02:31,497 adding 'galaxy/tools/error_reports/plugins/github.py' 2026-02-11T17:02:31,499 adding 'galaxy/tools/error_reports/plugins/gitlab.py' 2026-02-11T17:02:31,501 adding 'galaxy/tools/error_reports/plugins/influxdb.py' 2026-02-11T17:02:31,502 adding 'galaxy/tools/error_reports/plugins/json.py' 2026-02-11T17:02:31,504 adding 'galaxy/tools/error_reports/plugins/sentry.py' 2026-02-11T17:02:31,505 adding 'galaxy/tools/error_reports/plugins/slack.py' 2026-02-11T17:02:31,507 adding 'galaxy/tools/expressions/__init__.py' 2026-02-11T17:02:31,508 adding 'galaxy/tools/expressions/cwlNodeEngine.js' 2026-02-11T17:02:31,510 adding 'galaxy/tools/expressions/evaluation.py' 2026-02-11T17:02:31,511 adding 'galaxy/tools/expressions/script.py' 2026-02-11T17:02:31,512 adding 'galaxy/tools/expressions/util.py' 2026-02-11T17:02:31,514 adding 'galaxy/tools/fetch/__init__.py' 2026-02-11T17:02:31,516 adding 'galaxy/tools/fetch/workbooks.py' 2026-02-11T17:02:31,518 adding 'galaxy/tools/filters/__init__.py' 2026-02-11T17:02:31,520 adding 'galaxy/tools/imp_exp/__init__.py' 2026-02-11T17:02:31,522 adding 'galaxy/tools/imp_exp/exp_history_to_archive.xml' 2026-02-11T17:02:31,523 adding 'galaxy/tools/imp_exp/exp_history_to_uri.xml' 2026-02-11T17:02:31,524 adding 'galaxy/tools/imp_exp/export_history.py' 2026-02-11T17:02:31,526 adding 'galaxy/tools/imp_exp/imp_history_from_archive.xml' 2026-02-11T17:02:31,527 adding 'galaxy/tools/imp_exp/unpack_tar_gz_archive.py' 2026-02-11T17:02:31,531 adding 'galaxy/tools/parameters/__init__.py' 2026-02-11T17:02:31,545 adding 'galaxy/tools/parameters/basic.py' 2026-02-11T17:02:31,547 adding 'galaxy/tools/parameters/cancelable_request.py' 2026-02-11T17:02:31,549 adding 'galaxy/tools/parameters/dataset_matcher.py' 2026-02-11T17:02:31,554 adding 'galaxy/tools/parameters/dynamic_options.py' 2026-02-11T17:02:31,558 adding 'galaxy/tools/parameters/grouping.py' 2026-02-11T17:02:31,560 adding 'galaxy/tools/parameters/input_translation.py' 2026-02-11T17:02:31,562 adding 'galaxy/tools/parameters/meta.py' 2026-02-11T17:02:31,564 adding 'galaxy/tools/parameters/options.py' 2026-02-11T17:02:31,565 adding 'galaxy/tools/parameters/populate_model.py' 2026-02-11T17:02:31,567 adding 'galaxy/tools/parameters/sanitize.py' 2026-02-11T17:02:31,569 adding 'galaxy/tools/parameters/validation.py' 2026-02-11T17:02:31,570 adding 'galaxy/tools/parameters/workflow_utils.py' 2026-02-11T17:02:31,572 adding 'galaxy/tools/parameters/wrapped.py' 2026-02-11T17:02:31,574 adding 'galaxy/tools/parameters/wrapped_json.py' 2026-02-11T17:02:31,577 adding 'galaxy/tools/search/__init__.py' 2026-02-11T17:02:31,578 adding 'galaxy/tools/util/__init__.py' 2026-02-11T17:02:31,582 adding 'galaxy/tools/util/maf_utilities.py' 2026-02-11T17:02:31,584 adding 'galaxy/tools/util/galaxyops/__init__.py' 2026-02-11T17:02:31,586 adding 'galaxy/visualization/__init__.py' 2026-02-11T17:02:31,588 adding 'galaxy/visualization/genomes.py' 2026-02-11T17:02:31,589 adding 'galaxy/visualization/data_providers/__init__.py' 2026-02-11T17:02:31,591 adding 'galaxy/visualization/data_providers/basic.py' 2026-02-11T17:02:31,592 adding 'galaxy/visualization/data_providers/cigar.py' 2026-02-11T17:02:31,599 adding 'galaxy/visualization/data_providers/genome.py' 2026-02-11T17:02:31,601 adding 'galaxy/visualization/data_providers/registry.py' 2026-02-11T17:02:31,603 adding 'galaxy/visualization/data_providers/phyloviz/__init__.py' 2026-02-11T17:02:31,604 adding 'galaxy/visualization/data_providers/phyloviz/baseparser.py' 2026-02-11T17:02:31,606 adding 'galaxy/visualization/data_providers/phyloviz/newickparser.py' 2026-02-11T17:02:31,608 adding 'galaxy/visualization/data_providers/phyloviz/nexusparser.py' 2026-02-11T17:02:31,609 adding 'galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py' 2026-02-11T17:02:31,611 adding 'galaxy/visualization/genome/__init__.py' 2026-02-11T17:02:31,612 adding 'galaxy/visualization/plugins/__init__.py' 2026-02-11T17:02:31,615 adding 'galaxy/visualization/plugins/config_parser.py' 2026-02-11T17:02:31,617 adding 'galaxy/visualization/plugins/datasource_testing.py' 2026-02-11T17:02:31,619 adding 'galaxy/visualization/plugins/plugin.py' 2026-02-11T17:02:31,620 adding 'galaxy/visualization/plugins/registry.py' 2026-02-11T17:02:31,622 adding 'galaxy/visualization/plugins/resource_parser.py' 2026-02-11T17:02:31,624 adding 'galaxy/visualization/plugins/utils.py' 2026-02-11T17:02:31,625 adding 'galaxy/visualization/tracks/__init__.py' 2026-02-11T17:02:31,627 adding 'galaxy/webhooks/__init__.py' 2026-02-11T17:02:31,629 adding 'galaxy/work/__init__.py' 2026-02-11T17:02:31,630 adding 'galaxy/work/context.py' 2026-02-11T17:02:31,632 adding 'galaxy/workflow/__init__.py' 2026-02-11T17:02:31,634 adding 'galaxy/workflow/errors.py' 2026-02-11T17:02:31,637 adding 'galaxy/workflow/extract.py' 2026-02-11T17:02:31,651 adding 'galaxy/workflow/modules.py' 2026-02-11T17:02:31,654 adding 'galaxy/workflow/render.py' 2026-02-11T17:02:31,658 adding 'galaxy/workflow/run.py' 2026-02-11T17:02:31,662 adding 'galaxy/workflow/run_request.py' 2026-02-11T17:02:31,665 adding 'galaxy/workflow/scheduling_manager.py' 2026-02-11T17:02:31,667 adding 'galaxy/workflow/steps.py' 2026-02-11T17:02:31,668 adding 'galaxy/workflow/trs_proxy.py' 2026-02-11T17:02:31,670 adding 'galaxy/workflow/workflow_parameter_input_definitions.py' 2026-02-11T17:02:31,671 adding 'galaxy/workflow/refactor/__init__.py' 2026-02-11T17:02:31,675 adding 'galaxy/workflow/refactor/execute.py' 2026-02-11T17:02:31,677 adding 'galaxy/workflow/refactor/schema.py' 2026-02-11T17:02:31,678 adding 'galaxy/workflow/reports/__init__.py' 2026-02-11T17:02:31,680 adding 'galaxy/workflow/reports/generators/__init__.py' 2026-02-11T17:02:31,682 adding 'galaxy/workflow/reports/generators/markdown.py' 2026-02-11T17:02:31,684 adding 'galaxy/workflow/resources/__init__.py' 2026-02-11T17:02:31,685 adding 'galaxy/workflow/resources/example.py.sample' 2026-02-11T17:02:31,687 adding 'galaxy/workflow/schedulers/__init__.py' 2026-02-11T17:02:31,688 adding 'galaxy/workflow/schedulers/core.py' 2026-02-11T17:02:31,692 adding 'galaxy_app-25.1.1.dist-info/licenses/LICENSE' 2026-02-11T17:02:31,694 adding 'galaxy_ext/__init__.py' 2026-02-11T17:02:31,695 adding 'galaxy_ext/py.typed' 2026-02-11T17:02:31,697 adding 'galaxy_ext/container_monitor/__init__.py' 2026-02-11T17:02:31,698 adding 'galaxy_ext/container_monitor/monitor.py' 2026-02-11T17:02:31,700 adding 'galaxy_ext/expressions/__init__.py' 2026-02-11T17:02:31,702 adding 'galaxy_ext/expressions/handle_job.py' 2026-02-11T17:02:31,703 adding 'galaxy_ext/metadata/__init__.py' 2026-02-11T17:02:31,704 adding 'galaxy_ext/metadata/set_metadata.py' 2026-02-11T17:02:31,706 adding 'tool_shed_client/__init__.py' 2026-02-11T17:02:31,707 adding 'tool_shed_client/py.typed' 2026-02-11T17:02:31,708 adding 'tool_shed_client/trs_util.py' 2026-02-11T17:02:31,711 adding 'tool_shed_client/schema/__init__.py' 2026-02-11T17:02:31,713 adding 'tool_shed_client/schema/trs.py' 2026-02-11T17:02:31,715 adding 'tool_shed_client/schema/trs_service_info.py' 2026-02-11T17:02:31,728 adding 'galaxy_app-25.1.1.dist-info/METADATA' 2026-02-11T17:02:31,731 adding 'galaxy_app-25.1.1.dist-info/WHEEL' 2026-02-11T17:02:31,732 adding 'galaxy_app-25.1.1.dist-info/entry_points.txt' 2026-02-11T17:02:31,733 adding 'galaxy_app-25.1.1.dist-info/top_level.txt' 2026-02-11T17:02:31,743 adding 'galaxy_app-25.1.1.dist-info/RECORD' 2026-02-11T17:02:31,771 removing build/bdist.linux-armv7l/wheel 2026-02-11T17:02:32,026 Building wheel for galaxy-app (pyproject.toml): finished with status 'done' 2026-02-11T17:02:32,063 Created wheel for galaxy-app: filename=galaxy_app-25.1.1-py3-none-any.whl size=1583417 sha256=e36d461cfc8d19044d4e0caf045c4e61f456cad83d7ffdf251cf5950adaa57a8 2026-02-11T17:02:32,064 Stored in directory: /tmp/pip-ephem-wheel-cache-__l6b0h_/wheels/fc/f2/eb/752b6e858f8c870aced2f794b0f6971cb214e89f09d46214b7 2026-02-11T17:02:32,128 Successfully built galaxy-app 2026-02-11T17:02:32,168 Removed build tracker: '/tmp/pip-build-tracker-_0nklxzb'