2026-02-11T21:09:46,000 Created temporary directory: /tmp/pip-ephem-wheel-cache-qe5tnt0a 2026-02-11T21:09:46,002 Created temporary directory: /tmp/pip-build-tracker-_qwyx4bv 2026-02-11T21:09:46,002 Initialized build tracking at /tmp/pip-build-tracker-_qwyx4bv 2026-02-11T21:09:46,003 Created build tracker: /tmp/pip-build-tracker-_qwyx4bv 2026-02-11T21:09:46,003 Entered build tracker: /tmp/pip-build-tracker-_qwyx4bv 2026-02-11T21:09:46,004 Created temporary directory: /tmp/pip-wheel-yo4i6b6_ 2026-02-11T21:09:46,007 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-02-11T21:09:46,009 Created temporary directory: /tmp/pip-ephem-wheel-cache-_0enxrfy 2026-02-11T21:09:46,032 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-02-11T21:09:46,036 2 location(s) to search for versions of scipion-em-membrain: 2026-02-11T21:09:46,036 * https://pypi.org/simple/scipion-em-membrain/ 2026-02-11T21:09:46,036 * https://www.piwheels.org/simple/scipion-em-membrain/ 2026-02-11T21:09:46,036 Fetching project page and analyzing links: https://pypi.org/simple/scipion-em-membrain/ 2026-02-11T21:09:46,037 Getting page https://pypi.org/simple/scipion-em-membrain/ 2026-02-11T21:09:46,039 Found index url https://pypi.org/simple 2026-02-11T21:09:46,255 Fetched page https://pypi.org/simple/scipion-em-membrain/ as application/vnd.pypi.simple.v1+json 2026-02-11T21:09:46,259 Skipping link: No binaries permitted for scipion-em-membrain: https://files.pythonhosted.org/packages/75/bd/9e8ca0d268f3f5d026895eb9176dcd5b4e34bfe885688f0bea727c6f58c2/scipion_em_membrain-3.0.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-membrain/) (requires-python:>=3.8) 2026-02-11T21:09:46,261 Found link https://files.pythonhosted.org/packages/97/ad/96d7ecc261d6e17ff53df76ab29161212cda86085e96130731d4cd102684/scipion_em_membrain-3.0.0.tar.gz (from https://pypi.org/simple/scipion-em-membrain/) (requires-python:>=3.8), version: 3.0.0 2026-02-11T21:09:46,261 Skipping link: No binaries permitted for scipion-em-membrain: https://files.pythonhosted.org/packages/16/f6/54d319054f5593143037c8c8d76a95c3fea4a5a382ec56f20d369e9f5e27/scipion_em_membrain-3.0.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-membrain/) (requires-python:>=3.8) 2026-02-11T21:09:46,262 Found link https://files.pythonhosted.org/packages/1a/48/49f5dd87c57c3b00191b3e428824d7725687a10d62996cf1efdc3ea9be44/scipion_em_membrain-3.0.1.tar.gz (from https://pypi.org/simple/scipion-em-membrain/) (requires-python:>=3.8), version: 3.0.1 2026-02-11T21:09:46,263 Skipping link: No binaries permitted for scipion-em-membrain: https://files.pythonhosted.org/packages/b8/e5/8c8efb548da52e579491ad01cacb4519f15057c38fd9add04f4cc7ed406a/scipion_em_membrain-3.1.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-membrain/) (requires-python:>=3.8) 2026-02-11T21:09:46,264 Found link https://files.pythonhosted.org/packages/e6/ad/638eeab06f72c0db15f0e2ae521dbc4f3185d84b5ecf707cca71eedce3fa/scipion_em_membrain-3.1.0.tar.gz (from https://pypi.org/simple/scipion-em-membrain/) (requires-python:>=3.8), version: 3.1.0 2026-02-11T21:09:46,264 Skipping link: No binaries permitted for scipion-em-membrain: https://files.pythonhosted.org/packages/26/b4/6d0d3c35fe6277640711ebba246141c9d2275c4a31cd3b00c2c1b4cda722/scipion_em_membrain-3.1.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-membrain/) (requires-python:>=3.8) 2026-02-11T21:09:46,265 Found link https://files.pythonhosted.org/packages/71/c2/e83765bdf569131e520c8fa0befb95603c1b5f5eb3bdafb1f88a7a2f6282/scipion_em_membrain-3.1.1.tar.gz (from https://pypi.org/simple/scipion-em-membrain/) (requires-python:>=3.8), version: 3.1.1 2026-02-11T21:09:46,266 Skipping link: No binaries permitted for scipion-em-membrain: https://files.pythonhosted.org/packages/f4/f6/493df78c5d8f87f301edfa70c1001e023502cad1536cb1afd08988514aba/scipion_em_membrain-3.1.2-py3-none-any.whl (from https://pypi.org/simple/scipion-em-membrain/) (requires-python:>=3.8) 2026-02-11T21:09:46,267 Found link https://files.pythonhosted.org/packages/e0/95/d6271a556ceb3c6bf59a79a97b5dabf62d21152fce4306f01a7248f9aeb5/scipion_em_membrain-3.1.2.tar.gz (from https://pypi.org/simple/scipion-em-membrain/) (requires-python:>=3.8), version: 3.1.2 2026-02-11T21:09:46,267 Skipping link: No binaries permitted for scipion-em-membrain: https://files.pythonhosted.org/packages/85/3c/12ca83d143dd6e9ceea103ca23577800ca5b466e505e06cf3155aaf0cfd7/scipion_em_membrain-3.1.3-py3-none-any.whl (from https://pypi.org/simple/scipion-em-membrain/) (requires-python:>=3.8) 2026-02-11T21:09:46,268 Found link https://files.pythonhosted.org/packages/ea/c6/4acb4030111490934273f6b4745d2fa86c86a12057129d366dfd0acec927/scipion_em_membrain-3.1.3.tar.gz (from https://pypi.org/simple/scipion-em-membrain/) (requires-python:>=3.8), version: 3.1.3 2026-02-11T21:09:46,269 Skipping link: No binaries permitted for scipion-em-membrain: https://files.pythonhosted.org/packages/63/02/cbb0b2b521f39abb9a6bb8ef1162ea370e9e28c3a863184ed390c8ae2680/scipion_em_membrain-3.1.4-py3-none-any.whl (from https://pypi.org/simple/scipion-em-membrain/) (requires-python:>=3.8) 2026-02-11T21:09:46,270 Found link https://files.pythonhosted.org/packages/2a/fb/9981f62bdee5e1c0314738e0d7c26986de0a03b9ac3c358fcc741649f39d/scipion_em_membrain-3.1.4.tar.gz (from https://pypi.org/simple/scipion-em-membrain/) (requires-python:>=3.8), version: 3.1.4 2026-02-11T21:09:46,270 Skipping link: No binaries permitted for scipion-em-membrain: https://files.pythonhosted.org/packages/8a/41/7a6227740e60ce1cf0364d937f516b746d400d06d54185cebbd5ee133815/scipion_em_membrain-3.1.5-py3-none-any.whl (from https://pypi.org/simple/scipion-em-membrain/) (requires-python:>=3.8) 2026-02-11T21:09:46,271 Found link https://files.pythonhosted.org/packages/d6/88/a040b7f77ca7bd484e6bdc98f9722f396f768fd45fa3d1b12e70df047198/scipion_em_membrain-3.1.5.tar.gz (from https://pypi.org/simple/scipion-em-membrain/) (requires-python:>=3.8), version: 3.1.5 2026-02-11T21:09:46,272 Fetching project page and analyzing links: https://www.piwheels.org/simple/scipion-em-membrain/ 2026-02-11T21:09:46,272 Getting page https://www.piwheels.org/simple/scipion-em-membrain/ 2026-02-11T21:09:46,274 Found index url https://www.piwheels.org/simple 2026-02-11T21:09:46,430 Fetched page https://www.piwheels.org/simple/scipion-em-membrain/ as text/html 2026-02-11T21:09:46,433 Skipping link: No binaries permitted for scipion-em-membrain: https://www.piwheels.org/simple/scipion-em-membrain/scipion_em_membrain-3.1.3-py3-none-any.whl#sha256=8629981c9411de3c13c53a1588551e62606739ac320dac5845bb8cd03b1e4a94 (from https://www.piwheels.org/simple/scipion-em-membrain/) (requires-python:>=3.8) 2026-02-11T21:09:46,433 Skipping link: No binaries permitted for scipion-em-membrain: https://www.piwheels.org/simple/scipion-em-membrain/scipion_em_membrain-3.1.2-py3-none-any.whl#sha256=601d5f677a855dc255935b3606636201a73c119ee48d2737331cb3248ba9de84 (from https://www.piwheels.org/simple/scipion-em-membrain/) (requires-python:>=3.8) 2026-02-11T21:09:46,434 Skipping link: No binaries permitted for scipion-em-membrain: https://www.piwheels.org/simple/scipion-em-membrain/scipion_em_membrain-3.1.1-py3-none-any.whl#sha256=4cedc68f5e116d5829618b8ce019a7adad2e9c9d86a222cb1b7738d642140397 (from https://www.piwheels.org/simple/scipion-em-membrain/) (requires-python:>=3.8) 2026-02-11T21:09:46,434 Skipping link: No binaries permitted for scipion-em-membrain: https://www.piwheels.org/simple/scipion-em-membrain/scipion_em_membrain-3.1.0-py3-none-any.whl#sha256=467e45e3b7b82f4f268b6e19f09a6b4d7cceb345a354542230e08841da968615 (from https://www.piwheels.org/simple/scipion-em-membrain/) (requires-python:>=3.8) 2026-02-11T21:09:46,435 Skipping link: No binaries permitted for scipion-em-membrain: https://www.piwheels.org/simple/scipion-em-membrain/scipion_em_membrain-3.0.1-py3-none-any.whl#sha256=5f445fad858170f1d787321c9ff8aa8183c797adb0b8fc5c9152892a53032003 (from https://www.piwheels.org/simple/scipion-em-membrain/) (requires-python:>=3.8) 2026-02-11T21:09:46,435 Skipping link: No binaries permitted for scipion-em-membrain: https://archive1.piwheels.org/simple/scipion-em-membrain/scipion_em_membrain-3.0.0-py3-none-any.whl#sha256=af53292bbc51cab29f0a8a12b9ce20dc7efa79c0b687451426d0beef96f1c465 (from https://www.piwheels.org/simple/scipion-em-membrain/) (requires-python:>=3.8) 2026-02-11T21:09:46,436 Skipping link: not a file: https://www.piwheels.org/simple/scipion-em-membrain/ 2026-02-11T21:09:46,437 Skipping link: not a file: https://pypi.org/simple/scipion-em-membrain/ 2026-02-11T21:09:46,456 Given no hashes to check 1 links for project 'scipion-em-membrain': discarding no candidates 2026-02-11T21:09:46,473 Collecting scipion-em-membrain==3.1.4 2026-02-11T21:09:46,476 Created temporary directory: /tmp/pip-unpack-8x0g680s 2026-02-11T21:09:46,616 Downloading scipion_em_membrain-3.1.4.tar.gz (89 kB) 2026-02-11T21:09:46,734 Added scipion-em-membrain==3.1.4 from https://files.pythonhosted.org/packages/2a/fb/9981f62bdee5e1c0314738e0d7c26986de0a03b9ac3c358fcc741649f39d/scipion_em_membrain-3.1.4.tar.gz to build tracker '/tmp/pip-build-tracker-_qwyx4bv' 2026-02-11T21:09:46,739 Created temporary directory: /tmp/pip-build-env-81bex3v8 2026-02-11T21:09:46,744 Installing build dependencies: started 2026-02-11T21:09:46,745 Running command pip subprocess to install build dependencies 2026-02-11T21:09:47,887 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-02-11T21:09:48,431 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-02-11T21:09:48,455 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-02-11T21:09:50,187 Collecting setuptools 2026-02-11T21:09:50,207 Using cached setuptools-82.0.0-py3-none-any.whl (1.0 MB) 2026-02-11T21:09:50,499 Collecting wheel 2026-02-11T21:09:50,515 Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB) 2026-02-11T21:09:50,699 Collecting packaging>=24.0 2026-02-11T21:09:50,717 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-02-11T21:09:53,743 Installing collected packages: setuptools, packaging, wheel 2026-02-11T21:09:57,153 Creating /tmp/pip-build-env-81bex3v8/overlay/local/bin 2026-02-11T21:09:57,155 changing mode of /tmp/pip-build-env-81bex3v8/overlay/local/bin/wheel to 755 2026-02-11T21:09:57,177 Successfully installed packaging-26.0 setuptools-82.0.0 wheel-0.46.3 2026-02-11T21:09:57,477 Installing build dependencies: finished with status 'done' 2026-02-11T21:09:57,484 Getting requirements to build wheel: started 2026-02-11T21:09:57,485 Running command Getting requirements to build wheel 2026-02-11T21:09:58,090 No `packages` or `py_modules` configuration, performing automatic discovery. 2026-02-11T21:09:58,090 `flat-layout` detected -- analysing . 2026-02-11T21:09:58,106 discovered packages -- ['membrain', 'membrain.protocols', 'membrain.tests'] 2026-02-11T21:09:58,113 /tmp/pip-build-env-81bex3v8/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-02-11T21:09:58,114 !! 2026-02-11T21:09:58,115 ******************************************************************************** 2026-02-11T21:09:58,115 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-02-11T21:09:58,117 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-02-11T21:09:58,117 or your builds will no longer be supported. 2026-02-11T21:09:58,118 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-11T21:09:58,119 ******************************************************************************** 2026-02-11T21:09:58,120 !! 2026-02-11T21:09:58,120 corresp(dist, value, root_dir) 2026-02-11T21:09:58,191 /tmp/pip-build-env-81bex3v8/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-02-11T21:09:58,191 !! 2026-02-11T21:09:58,192 ******************************************************************************** 2026-02-11T21:09:58,192 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-02-11T21:09:58,193 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-02-11T21:09:58,194 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-11T21:09:58,195 ******************************************************************************** 2026-02-11T21:09:58,196 !! 2026-02-11T21:09:58,196 dist._finalize_license_expression() 2026-02-11T21:09:58,197 /tmp/pip-build-env-81bex3v8/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-02-11T21:09:58,197 !! 2026-02-11T21:09:58,198 ******************************************************************************** 2026-02-11T21:09:58,198 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-02-11T21:09:58,199 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-02-11T21:09:58,200 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-11T21:09:58,201 ******************************************************************************** 2026-02-11T21:09:58,202 !! 2026-02-11T21:09:58,202 self._finalize_license_expression() 2026-02-11T21:09:58,203 running egg_info 2026-02-11T21:09:58,207 writing scipion_em_membrain.egg-info/PKG-INFO 2026-02-11T21:09:58,210 writing dependency_links to scipion_em_membrain.egg-info/dependency_links.txt 2026-02-11T21:09:58,212 writing entry points to scipion_em_membrain.egg-info/entry_points.txt 2026-02-11T21:09:58,214 writing requirements to scipion_em_membrain.egg-info/requires.txt 2026-02-11T21:09:58,215 writing top-level names to scipion_em_membrain.egg-info/top_level.txt 2026-02-11T21:09:58,236 reading manifest file 'scipion_em_membrain.egg-info/SOURCES.txt' 2026-02-11T21:09:58,239 reading manifest template 'MANIFEST.in' 2026-02-11T21:09:58,241 adding license file 'LICENSE' 2026-02-11T21:09:58,244 writing manifest file 'scipion_em_membrain.egg-info/SOURCES.txt' 2026-02-11T21:09:58,343 Getting requirements to build wheel: finished with status 'done' 2026-02-11T21:09:58,346 Created temporary directory: /tmp/pip-modern-metadata-v0h70fwl 2026-02-11T21:09:58,348 Preparing metadata (pyproject.toml): started 2026-02-11T21:09:58,350 Running command Preparing metadata (pyproject.toml) 2026-02-11T21:09:58,905 No `packages` or `py_modules` configuration, performing automatic discovery. 2026-02-11T21:09:58,905 `flat-layout` detected -- analysing . 2026-02-11T21:09:58,920 discovered packages -- ['membrain', 'membrain.protocols', 'membrain.tests'] 2026-02-11T21:09:58,926 /tmp/pip-build-env-81bex3v8/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-02-11T21:09:58,927 !! 2026-02-11T21:09:58,928 ******************************************************************************** 2026-02-11T21:09:58,929 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-02-11T21:09:58,929 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-02-11T21:09:58,930 or your builds will no longer be supported. 2026-02-11T21:09:58,931 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-11T21:09:58,931 ******************************************************************************** 2026-02-11T21:09:58,932 !! 2026-02-11T21:09:58,932 corresp(dist, value, root_dir) 2026-02-11T21:09:59,000 /tmp/pip-build-env-81bex3v8/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-02-11T21:09:59,001 !! 2026-02-11T21:09:59,002 ******************************************************************************** 2026-02-11T21:09:59,002 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-02-11T21:09:59,003 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-02-11T21:09:59,004 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-11T21:09:59,005 ******************************************************************************** 2026-02-11T21:09:59,006 !! 2026-02-11T21:09:59,007 dist._finalize_license_expression() 2026-02-11T21:09:59,007 /tmp/pip-build-env-81bex3v8/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-02-11T21:09:59,008 !! 2026-02-11T21:09:59,009 ******************************************************************************** 2026-02-11T21:09:59,009 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-02-11T21:09:59,011 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-02-11T21:09:59,012 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-11T21:09:59,012 ******************************************************************************** 2026-02-11T21:09:59,013 !! 2026-02-11T21:09:59,014 self._finalize_license_expression() 2026-02-11T21:09:59,015 running dist_info 2026-02-11T21:09:59,022 creating /tmp/pip-modern-metadata-v0h70fwl/scipion_em_membrain.egg-info 2026-02-11T21:09:59,023 writing /tmp/pip-modern-metadata-v0h70fwl/scipion_em_membrain.egg-info/PKG-INFO 2026-02-11T21:09:59,026 writing dependency_links to /tmp/pip-modern-metadata-v0h70fwl/scipion_em_membrain.egg-info/dependency_links.txt 2026-02-11T21:09:59,028 writing entry points to /tmp/pip-modern-metadata-v0h70fwl/scipion_em_membrain.egg-info/entry_points.txt 2026-02-11T21:09:59,029 writing requirements to /tmp/pip-modern-metadata-v0h70fwl/scipion_em_membrain.egg-info/requires.txt 2026-02-11T21:09:59,030 writing top-level names to /tmp/pip-modern-metadata-v0h70fwl/scipion_em_membrain.egg-info/top_level.txt 2026-02-11T21:09:59,032 writing manifest file '/tmp/pip-modern-metadata-v0h70fwl/scipion_em_membrain.egg-info/SOURCES.txt' 2026-02-11T21:09:59,050 reading manifest file '/tmp/pip-modern-metadata-v0h70fwl/scipion_em_membrain.egg-info/SOURCES.txt' 2026-02-11T21:09:59,052 reading manifest template 'MANIFEST.in' 2026-02-11T21:09:59,055 adding license file 'LICENSE' 2026-02-11T21:09:59,057 writing manifest file '/tmp/pip-modern-metadata-v0h70fwl/scipion_em_membrain.egg-info/SOURCES.txt' 2026-02-11T21:09:59,058 creating '/tmp/pip-modern-metadata-v0h70fwl/scipion_em_membrain-3.1.4.dist-info' 2026-02-11T21:09:59,183 Preparing metadata (pyproject.toml): finished with status 'done' 2026-02-11T21:09:59,188 Source in /tmp/pip-wheel-yo4i6b6_/scipion-em-membrain_2225428a718549c686351eeaabe077ab has version 3.1.4, which satisfies requirement scipion-em-membrain==3.1.4 from https://files.pythonhosted.org/packages/2a/fb/9981f62bdee5e1c0314738e0d7c26986de0a03b9ac3c358fcc741649f39d/scipion_em_membrain-3.1.4.tar.gz 2026-02-11T21:09:59,190 Removed scipion-em-membrain==3.1.4 from https://files.pythonhosted.org/packages/2a/fb/9981f62bdee5e1c0314738e0d7c26986de0a03b9ac3c358fcc741649f39d/scipion_em_membrain-3.1.4.tar.gz from build tracker '/tmp/pip-build-tracker-_qwyx4bv' 2026-02-11T21:09:59,195 Created temporary directory: /tmp/pip-unpack-a9aqd_uv 2026-02-11T21:09:59,195 Building wheels for collected packages: scipion-em-membrain 2026-02-11T21:09:59,200 Created temporary directory: /tmp/pip-wheel-ui3gs4u_ 2026-02-11T21:09:59,200 Destination directory: /tmp/pip-wheel-ui3gs4u_ 2026-02-11T21:09:59,202 Building wheel for scipion-em-membrain (pyproject.toml): started 2026-02-11T21:09:59,203 Running command Building wheel for scipion-em-membrain (pyproject.toml) 2026-02-11T21:09:59,747 No `packages` or `py_modules` configuration, performing automatic discovery. 2026-02-11T21:09:59,747 `flat-layout` detected -- analysing . 2026-02-11T21:09:59,762 discovered packages -- ['membrain', 'membrain.protocols', 'membrain.tests'] 2026-02-11T21:09:59,768 /tmp/pip-build-env-81bex3v8/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-02-11T21:09:59,769 !! 2026-02-11T21:09:59,770 ******************************************************************************** 2026-02-11T21:09:59,770 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-02-11T21:09:59,771 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-02-11T21:09:59,772 or your builds will no longer be supported. 2026-02-11T21:09:59,773 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-11T21:09:59,774 ******************************************************************************** 2026-02-11T21:09:59,775 !! 2026-02-11T21:09:59,775 corresp(dist, value, root_dir) 2026-02-11T21:09:59,835 /tmp/pip-build-env-81bex3v8/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-02-11T21:09:59,836 !! 2026-02-11T21:09:59,837 ******************************************************************************** 2026-02-11T21:09:59,837 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-02-11T21:09:59,839 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-02-11T21:09:59,840 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-11T21:09:59,840 ******************************************************************************** 2026-02-11T21:09:59,842 !! 2026-02-11T21:09:59,842 dist._finalize_license_expression() 2026-02-11T21:09:59,843 /tmp/pip-build-env-81bex3v8/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-02-11T21:09:59,843 !! 2026-02-11T21:09:59,845 ******************************************************************************** 2026-02-11T21:09:59,845 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-02-11T21:09:59,846 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-02-11T21:09:59,848 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-11T21:09:59,848 ******************************************************************************** 2026-02-11T21:09:59,850 !! 2026-02-11T21:09:59,850 self._finalize_license_expression() 2026-02-11T21:09:59,851 running bdist_wheel 2026-02-11T21:09:59,860 running build 2026-02-11T21:09:59,861 running build_py 2026-02-11T21:09:59,866 creating build/lib/membrain 2026-02-11T21:09:59,868 copying membrain/__init__.py -> build/lib/membrain 2026-02-11T21:09:59,870 copying membrain/bibtex.py -> build/lib/membrain 2026-02-11T21:09:59,872 copying membrain/constants.py -> build/lib/membrain 2026-02-11T21:09:59,875 creating build/lib/membrain/protocols 2026-02-11T21:09:59,875 copying membrain/protocols/protocol_membrain_seg.py -> build/lib/membrain/protocols 2026-02-11T21:09:59,878 copying membrain/protocols/__init__.py -> build/lib/membrain/protocols 2026-02-11T21:09:59,880 copying membrain/protocols/protocol_membrain_skeletonize.py -> build/lib/membrain/protocols 2026-02-11T21:09:59,882 creating build/lib/membrain/tests 2026-02-11T21:09:59,883 copying membrain/tests/__init__.py -> build/lib/membrain/tests 2026-02-11T21:09:59,885 copying membrain/tests/test_membrain.py -> build/lib/membrain/tests 2026-02-11T21:09:59,886 running egg_info 2026-02-11T21:09:59,896 writing scipion_em_membrain.egg-info/PKG-INFO 2026-02-11T21:09:59,899 writing dependency_links to scipion_em_membrain.egg-info/dependency_links.txt 2026-02-11T21:09:59,900 writing entry points to scipion_em_membrain.egg-info/entry_points.txt 2026-02-11T21:09:59,901 writing requirements to scipion_em_membrain.egg-info/requires.txt 2026-02-11T21:09:59,902 writing top-level names to scipion_em_membrain.egg-info/top_level.txt 2026-02-11T21:09:59,912 reading manifest file 'scipion_em_membrain.egg-info/SOURCES.txt' 2026-02-11T21:09:59,915 reading manifest template 'MANIFEST.in' 2026-02-11T21:09:59,917 adding license file 'LICENSE' 2026-02-11T21:09:59,920 writing manifest file 'scipion_em_membrain.egg-info/SOURCES.txt' 2026-02-11T21:09:59,924 copying membrain/icon.png -> build/lib/membrain 2026-02-11T21:09:59,927 copying membrain/protocols.conf -> build/lib/membrain 2026-02-11T21:09:59,938 installing to build/bdist.linux-armv7l/wheel 2026-02-11T21:09:59,939 running install 2026-02-11T21:09:59,962 running install_lib 2026-02-11T21:09:59,968 creating build/bdist.linux-armv7l/wheel 2026-02-11T21:09:59,970 creating build/bdist.linux-armv7l/wheel/membrain 2026-02-11T21:09:59,971 copying build/lib/membrain/__init__.py -> build/bdist.linux-armv7l/wheel/./membrain 2026-02-11T21:09:59,973 copying build/lib/membrain/protocols.conf -> build/bdist.linux-armv7l/wheel/./membrain 2026-02-11T21:09:59,975 creating build/bdist.linux-armv7l/wheel/membrain/protocols 2026-02-11T21:09:59,976 copying build/lib/membrain/protocols/protocol_membrain_seg.py -> build/bdist.linux-armv7l/wheel/./membrain/protocols 2026-02-11T21:09:59,979 copying build/lib/membrain/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/./membrain/protocols 2026-02-11T21:09:59,981 copying build/lib/membrain/protocols/protocol_membrain_skeletonize.py -> build/bdist.linux-armv7l/wheel/./membrain/protocols 2026-02-11T21:09:59,984 copying build/lib/membrain/bibtex.py -> build/bdist.linux-armv7l/wheel/./membrain 2026-02-11T21:09:59,986 copying build/lib/membrain/icon.png -> build/bdist.linux-armv7l/wheel/./membrain 2026-02-11T21:09:59,989 copying build/lib/membrain/constants.py -> build/bdist.linux-armv7l/wheel/./membrain 2026-02-11T21:09:59,992 creating build/bdist.linux-armv7l/wheel/membrain/tests 2026-02-11T21:09:59,993 copying build/lib/membrain/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./membrain/tests 2026-02-11T21:09:59,994 copying build/lib/membrain/tests/test_membrain.py -> build/bdist.linux-armv7l/wheel/./membrain/tests 2026-02-11T21:09:59,996 running install_egg_info 2026-02-11T21:10:00,001 Copying scipion_em_membrain.egg-info to build/bdist.linux-armv7l/wheel/./scipion_em_membrain-3.1.4-py3.11.egg-info 2026-02-11T21:10:00,012 running install_scripts 2026-02-11T21:10:00,024 creating build/bdist.linux-armv7l/wheel/scipion_em_membrain-3.1.4.dist-info/WHEEL 2026-02-11T21:10:00,027 creating '/tmp/pip-wheel-ui3gs4u_/.tmp-jpy7ik1_/scipion_em_membrain-3.1.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-02-11T21:10:00,030 adding 'membrain/__init__.py' 2026-02-11T21:10:00,031 adding 'membrain/bibtex.py' 2026-02-11T21:10:00,033 adding 'membrain/constants.py' 2026-02-11T21:10:00,039 adding 'membrain/icon.png' 2026-02-11T21:10:00,041 adding 'membrain/protocols.conf' 2026-02-11T21:10:00,042 adding 'membrain/protocols/__init__.py' 2026-02-11T21:10:00,044 adding 'membrain/protocols/protocol_membrain_seg.py' 2026-02-11T21:10:00,046 adding 'membrain/protocols/protocol_membrain_skeletonize.py' 2026-02-11T21:10:00,047 adding 'membrain/tests/__init__.py' 2026-02-11T21:10:00,049 adding 'membrain/tests/test_membrain.py' 2026-02-11T21:10:00,056 adding 'scipion_em_membrain-3.1.4.dist-info/licenses/LICENSE' 2026-02-11T21:10:00,057 adding 'scipion_em_membrain-3.1.4.dist-info/METADATA' 2026-02-11T21:10:00,059 adding 'scipion_em_membrain-3.1.4.dist-info/WHEEL' 2026-02-11T21:10:00,059 adding 'scipion_em_membrain-3.1.4.dist-info/entry_points.txt' 2026-02-11T21:10:00,060 adding 'scipion_em_membrain-3.1.4.dist-info/top_level.txt' 2026-02-11T21:10:00,061 adding 'scipion_em_membrain-3.1.4.dist-info/RECORD' 2026-02-11T21:10:00,063 removing build/bdist.linux-armv7l/wheel 2026-02-11T21:10:00,168 Building wheel for scipion-em-membrain (pyproject.toml): finished with status 'done' 2026-02-11T21:10:00,174 Created wheel for scipion-em-membrain: filename=scipion_em_membrain-3.1.4-py3-none-any.whl size=91232 sha256=9609ed5bb3a303f7e4c46a806ab10ab732a9e4cfa6c3fe0905cdf1501cd25ac5 2026-02-11T21:10:00,175 Stored in directory: /tmp/pip-ephem-wheel-cache-_0enxrfy/wheels/29/ac/08/a4b4ba20863127a25c7224888c68be8fb25f11d31a7caf6b52 2026-02-11T21:10:00,186 Successfully built scipion-em-membrain 2026-02-11T21:10:00,191 Removed build tracker: '/tmp/pip-build-tracker-_qwyx4bv'