2026-02-12T07:15:24,915 Created temporary directory: /tmp/pip-ephem-wheel-cache-u3f4x79y
2026-02-12T07:15:24,918 Created temporary directory: /tmp/pip-build-tracker-ujkcndwt
2026-02-12T07:15:24,919 Initialized build tracking at /tmp/pip-build-tracker-ujkcndwt
2026-02-12T07:15:24,920 Created build tracker: /tmp/pip-build-tracker-ujkcndwt
2026-02-12T07:15:24,920 Entered build tracker: /tmp/pip-build-tracker-ujkcndwt
2026-02-12T07:15:24,921 Created temporary directory: /tmp/pip-wheel-wpbp_tmk
2026-02-12T07:15:24,925 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-02-12T07:15:24,936 Created temporary directory: /tmp/pip-ephem-wheel-cache-wv9u2j6q
2026-02-12T07:15:24,984 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-02-12T07:15:24,999 2 location(s) to search for versions of avogadro:
2026-02-12T07:15:24,999 * https://pypi.org/simple/avogadro/
2026-02-12T07:15:24,999 * https://www.piwheels.org/simple/avogadro/
2026-02-12T07:15:25,000 Fetching project page and analyzing links: https://pypi.org/simple/avogadro/
2026-02-12T07:15:25,001 Getting page https://pypi.org/simple/avogadro/
2026-02-12T07:15:25,002 Found index url https://pypi.org/simple
2026-02-12T07:15:25,218 Fetched page https://pypi.org/simple/avogadro/ as application/vnd.pypi.simple.v1+json
2026-02-12T07:15:25,277   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/c9/c5/e4a537b0ac185a15d6aaca242dbc8206d5883eeee607594f0bc37bae8521/avogadro-0.0.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,277   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/ac/be/cdc616d7a849a73964edfc460e85fbc1e5e6f3d9bbfaa96db3e2db772299/avogadro-1.92.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,278   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/28/36/5c93d075449505763dc4a728263a721d4bad48b8a1e0cd89e62e12e7d7ca/avogadro-1.92.0-cp35-cp35m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,279   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/e3/71/e7f0abc1d84b897c168b4295dc3ec50825f560a2a3a56c18272982214fd1/avogadro-1.92.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,280   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/93/32/ff19acad40309b0c8c125aa5bcd757fc311ae28bcc615bc7c06fc3c212e1/avogadro-1.92.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,281   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/db/c9/f1b8603f61feabb9bbeac51e498a6ae8ed04752c17ea922fd179da52d4a5/avogadro-1.92.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,282   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/03/1f/9d3d8a9c047bca561901793e310ec4c33a2e5dd76db78f3af314b038efe1/avogadro-1.92.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,283   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/de/26/cd9d50bd5492680b8d499180e67146907e4ce4766dfd5442530955062776/avogadro-1.92.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,284   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/c6/62/84062c75aa043e71b9aecc80c5a13e324d05ea6c033ebcab23b5ff41f3b8/avogadro-1.92.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,285   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/ba/25/028d825251547729d1f01d131d9314a93412f6a0f65745e488a634edb37e/avogadro-1.92.0-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,286   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/f2/4b/5a1fd751ecde0d45232cd02e6ea7becdab4581722e18618592cb67219174/avogadro-1.92.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,286   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/2b/e1/f28acd75b7cfe3def889be8235f87e11e7cece6e0bdb086073aeb474aac5/avogadro-1.92.1-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,287   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/ee/b1/0619db4e5f6b8371b4a29c88eca2362b8f8f9f1acb3224a19fd751a46095/avogadro-1.92.1-cp35-cp35m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,288   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/8f/40/582451447d58cea4f223225d716984b5cb076214f4c8cfb2a49159093865/avogadro-1.92.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,289   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/cf/54/0a22125ce5f2c0d993bf9b03014b7c5f744954d27e4dbb58b8236017b232/avogadro-1.92.1-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,289   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/89/d1/1fdcd41b64cc2103ddc21116d36d508b5733b0b622bef07e882c7eb4db86/avogadro-1.92.1-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,290   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/5c/9c/0e80779eeb760b5aec37e8857bda152d26c964851f8e4b83879649538d52/avogadro-1.92.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,291   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/e6/71/4cd2226a5c9f8f91512ba3a4d2c43a1a6e769b2dbe09cbb045f3f8fa55de/avogadro-1.92.1-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,292   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/2a/8b/cae46858af4743fd1bd248c4f36bb78d5f7f2b3e1d8f284285e909be9b99/avogadro-1.92.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,293   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/aa/5d/c244055385039558e4df4d04e741b9646d4b9a7631691fb81dbd25298fb1/avogadro-1.92.1-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,294   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/ff/c8/03e4d4ad08a78592172f29f036075efbb555fae0e7502399cd20e3e0486a/avogadro-1.92.1-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,295   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/3e/1d/bdca7ab1054724ff985c3f172577256ca1a67d8ce8222bef1e94171e9c3e/avogadro-1.93.0-cp35-cp35m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,296   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/b0/2d/3dc13ea903ef13dd5a05864d76d97c4f67b4035ad58505295146400dc731/avogadro-1.93.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,297   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/05/59/6d387bf7463c5173ca9897ea94a6077563a1830d1d5bb43caed2d0a5b5b3/avogadro-1.93.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,298   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/98/d0/d0c8141c915ae4cd426cede045cb1b723401101766dedb6dd0b7681f569a/avogadro-1.93.1-cp35-cp35m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,299   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/52/d3/d906eb94acf266f941fdee82f89cae7607254b01657676e57642e6228807/avogadro-1.93.1-cp35-cp35m-manylinux2010_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,299   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/5f/c9/80613a8ed16927b0513554791731e1e25a44296d1135e6ea6c74aa9c0d5c/avogadro-1.93.1-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,300   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/5c/50/e6f37ba9d5e4922f24b4cb6d86e6778a4c31b766f95674b013c310371cd7/avogadro-1.93.1-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,301   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/29/9f/655055b42a6ad966a19a2f135712d06c0892ce0b77aecf8552182bd30673/avogadro-1.93.1-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,302   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/3c/28/ec4d97db4b2670196d4c3e3dd16a5eea19608990042c6ba5ddf61e5e4848/avogadro-1.93.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,303   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/b8/a3/473c7cc274820b3414ca917caa7ba3244ad15d9fc86b24d1dcdf531a5dc0/avogadro-1.93.1-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,303   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/d3/d6/2742a841308393d50748d4e5245710e73aa4dc26475be177d27a48f4c440/avogadro-1.93.1-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,304   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/4d/b1/72acce480c99a1f9c7ab0241bc944b0b1cb22ca75770345db0bd0b988fc7/avogadro-1.93.1-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,305   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/af/2c/6463d1bf835343c44f495e948864ef27ef75ee3c0494e4bbbd08cbc6f23a/avogadro-1.93.1-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,306   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/ee/ec/c7b5188a93b61db494047aa9d9af3039f7df210995bca0660a1b8e30a24d/avogadro-1.93.1-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,307   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/cb/d5/68c77fdc90490c8ac6ff7ef5d4432324fd9027c7a4a72e703002b0811da4/avogadro-1.93.1-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,308   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/98/5d/e3c489781f6be234da1b51c02f38a48bf82ad0b39a09bc4cae9cdc15c17b/avogadro-1.93.1-cp39-cp39-manylinux2010_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,309   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/bc/af/e4f71c5231b1f83ad347731c7fb3e3c9166b3bf0c74721928eb2e4a8832f/avogadro-1.93.1-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,309   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/2e/e0/820de5f5219cf0415b9950e81ea8ca449ced16e729201a73e65058a75d9a/avogadro-1.95.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,310   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/1d/25/eeb12a232cc5d42f823cc70e0866ffb6a991171f0999493ace0ddd3ac6f4/avogadro-1.95.0-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,312   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/3f/5f/a461c6d6caeac009e1cefcd781af0f4b6f00dab4f4521bc0992508cda00e/avogadro-1.95.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,312   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/50/4a/6671dabded0fb43fb6d9eef591eda8138a9e42671c632bd421025e4a1a35/avogadro-1.95.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,313   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/57/7b/78d252704d14a5ac19cbaf14e5b69a0e815462d3ed78b72d4a57dfcaaf5a/avogadro-1.95.0-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,314   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/9e/d6/8bc22d685e039ebfc999de688028c693488674359a82acaf58c21e6e9352/avogadro-1.95.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,315   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/46/9a/aa9d5ad89e438f0fd93543163111cb374ad5cf2e087c882592279227f1fe/avogadro-1.95.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,315   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/69/71/fb58e3f4689600396df4c1709356939813a874130b61d88efb6b8fe4cd0a/avogadro-1.95.0-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,316   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/71/f6/e9cf54fec862fb48ece33341388aa9962fb6c2ed88028767b1f867277d26/avogadro-1.95.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,317   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/4a/99/2f6d584fcd790f34ee3d0abd1ecdba373a10a1b140b83703502d0be6bdcb/avogadro-1.95.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,318   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/a3/ce/ef0df6c4c0797c48e8cb2385527d25c90e41ef62d8efcbccb3980dcfc672/avogadro-1.95.0-cp39-cp39-manylinux2010_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,319   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/76/ff/1871991a042280b7dad93eeb6dd75c87cea969cb82cd8023ffebe46084b6/avogadro-1.95.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,320   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/26/f3/9421b93d41a6b3ff826a6a784ce18b96de3b87e65826af11afef79feb690/avogadro-1.95.1-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,320   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/8d/03/234a2653c3a51ed6f56e4342911a64fa505c8eafc9e6856be4a4db62154f/avogadro-1.95.1-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,321   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/8d/d5/336ab0f8f21020e1a2ed6bd9626cba05bbe814673b9ae062d879738e273f/avogadro-1.95.1-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,322   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/12/87/594e5523c2883979471097f16c8501d01bfec57eb8d7f3d0aa180b9a8cb1/avogadro-1.95.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,323   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/89/28/ec65c40108ca37d41d60e2ad8670c9955b1140b2710cee17e24ca996d35b/avogadro-1.95.1-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,324   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/fd/5f/c1e8b1847c490fc85d46ca9b6aeaeb594cfbdccf250a4ea3c7e195c70dc2/avogadro-1.95.1-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,325   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/25/41/65f58ac85e522b53b246326ea279fbced021195080a3fb30fa10808a16c0/avogadro-1.95.1-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,326   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/75/ce/7cd33af4dfcf3c8368ee7bcaa31891c265d1ca20d3c3e29115e9febb31be/avogadro-1.95.1-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,326   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/be/4e/9370bfda3b2a4475445c82329faa35d57d045821b8b1772b2ddcb3661889/avogadro-1.95.1-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,327   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/32/e4/a071d3e0ade8a478b8d686d181f899559427f734903880425991ca9791e4/avogadro-1.95.1-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,328   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/09/39/0874fd166a794b2b3a61bafa65b868b4c86d48aee08b90e41aee49cbeab6/avogadro-1.95.1-cp39-cp39-manylinux2010_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,329   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/d4/69/baf224e636100523ab0c77d17fc64090a9a4f9e3d2e89c92f4dd6e11324a/avogadro-1.95.1-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,330   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/e4/fc/293350ad34d254f3ecb89bd04f5c8e9376a890bd774689528bdad8eff992/avogadro-1.96.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,331   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/38/80/8dd032f7182b985214fc6fa548b56d684a723b707b6cbf2e99ead6d09a0c/avogadro-1.96.0-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,331   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/7b/46/d016fd2949b55a283754ad537bcc420257f8aac17c1257581b2fb00fd310/avogadro-1.96.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,332   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/5d/56/c21ac3cad0bf66fb975f126fe9f41a282790f38454d141034dab00482f70/avogadro-1.96.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,333   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/b7/d4/21eede73d4f7b85c7dfeb1abeea256d6bfd10a2a64ddd18b7eeb2af0b9b9/avogadro-1.96.0-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,334   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/73/cc/d585f424fdc7ba3b652a834d8b7d27ff99bdba54f94e76528bda61354674/avogadro-1.96.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,335   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/9a/a8/35575a4c7e2269c716d67ee589e018584ecd2f2c50fe2b4f87cf2dd2186b/avogadro-1.96.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,336   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/de/68/370e93a0acd04a634d466b3ef59c38fcaf24de60a690763d5548fbad8245/avogadro-1.96.0-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,337   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/51/c0/2b1ac4f02d805f0a17fc01106dd8bbd2083ab5ab12a255ef1de9a3a24cd7/avogadro-1.96.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,338   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/3e/d9/933103ef69e5e5f84b281f433d0e1c098269b243d61e789cb760a3dd35a0/avogadro-1.96.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,339   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/b9/7f/87798b9c0524125669f64297e7590596840a6444861735e133b9b4725ca7/avogadro-1.96.0-cp39-cp39-manylinux2010_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,340   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/eb/80/7cf9e7f08ce14ac88b0ea53ec26f98dbaa85037e824a232cb34a23ff7a8b/avogadro-1.96.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,340   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/7d/b6/68410516cb433c3c1b8d3b7cd022323e3c210cb2c599d3c785ec0d50f48d/avogadro-1.97.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,341   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/0d/4a/81f3b29ce35080d3175100e951651f4131f44cee0a4fe6124c0e50e18d31/avogadro-1.97.0-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,342   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/6f/54/227250f0b076ae40e29a2ddfffcb511ba1d733bc72c751751d6bd02517f3/avogadro-1.97.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,343   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/cc/8e/d1d76022b2d48fbf4e753e8175d61bf3be17677023a8f3e7df6ed072eec7/avogadro-1.97.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,343   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/24/8d/f0e483b55acf8fb4e667c0227b59c053d199a1da3d7f9cb96a317f5c518e/avogadro-1.97.0-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,344   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/00/40/04514793c2e6782e6ca3d0c6ce142ee9f7a2430632f25e55dae60c3f8329/avogadro-1.97.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,345   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/71/fe/211d5282bfee5c7072b283f692626cfdbfe97e80d60c303f55d6dfcf9a3f/avogadro-1.97.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,346   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/12/78/aea1352ccf77243afe8da2a61034e42008f41289f458767c25994fea8426/avogadro-1.97.0-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,347   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/ba/df/54c7e2d2ecae5a2717165880d840b9319dbb2c274ff2d3a8f0073e42b873/avogadro-1.97.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,348   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/96/23/daea38520f520cc94ce5ca2b86f46d63f446bc43e1344092e07a859018c6/avogadro-1.97.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,348   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/49/d8/032dbae9e1b98bf8a86f3c074c2a10677905cb503fb0ca5834a717c7195e/avogadro-1.97.0-cp39-cp39-manylinux2010_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,349   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/00/a7/dfe430e05130d59054470609e315fb256f10f48b58f12937794a4b20e45a/avogadro-1.97.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,351   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/2d/7c/44fe8e5de4b022e89f26097a0fe643f51ed12bb2757b11fbb287cdd7a28d/avogadro-1.98.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,351   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/4f/a6/d905514c22dd68000830add1832e0fbc03be127aa0b3267d9978068c07c7/avogadro-1.98.0-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,352   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/7f/8f/23494be85c03c83493a69287361c1076208e9527c032e722c158643f29e2/avogadro-1.98.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,353   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/79/3b/37b91da498c4c3dce14631833939514b1fbb83ce7d528d6e0c1494b1b5f3/avogadro-1.98.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,354   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/2a/fe/07a5b8592f08c23a976b77ea3c9611743fa00068ee62115d7c9eb193db76/avogadro-1.98.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,354   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/15/7c/cff6bfcafbbc7690a66dd94112dc49c472925d47173f7c417b56632d7518/avogadro-1.98.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,355   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/4c/9b/a4cf55213d62d30ca80f8e82a5734858a3d08e1d386b97385a6dc29e2dd2/avogadro-1.98.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,356   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/62/92/d6e305ca045d79fabee66ecae0687e55908bd17e82147227692a11cddb33/avogadro-1.98.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,357   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/12/e2/0b80814441074a163d22222c5e3527415e51218df1b55a352fb7cbe08606/avogadro-1.98.0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,358   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/47/b1/a971fe802964cc4d468682ec83f8c91b1ef33b89322d2b117a1ee638c4ea/avogadro-1.98.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,359   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/8d/65/2913d79c19042100fcfba31fe99d616faad76352459eb61a4f8c228977c5/avogadro-1.98.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,360   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/d0/a3/668e960f47d73724d2d8fea01e87b9fce6fe4818d373313adfea2841276a/avogadro-1.98.1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,361   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/0d/3b/9fe38a08493ee42a77c478a08fbca06bd5cbc86619d5ccb7abce136d9c46/avogadro-1.98.1-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,361   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/50/c0/d7280c6058ed95d78a9efb17b35f7750c516ecdfbe40801cf2bcd9d7ebe1/avogadro-1.98.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,363   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/78/0a/734b1fabe41627b59a53cb79fe604e726a2e51abe9a0f4017b2b6dc41dee/avogadro-1.98.1-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,363   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/9e/24/3577884b8ea47eab071449fb2dd5aec1bb70bea4ccbfe2c8e578d614184b/avogadro-1.98.1-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,364   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/e5/a7/58e1305de7a54b5739d3aee1fa9dea6b956afd50369a050fe3c70c9c1edd/avogadro-1.98.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,365   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/0d/95/4bf7fb88a5ae2013be4428c847c697cef7569b586d4b3c82ce51966f72c4/avogadro-1.98.1-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,365   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/7b/90/8f15c741ce8ff317ca97a2a6d21501cee30c906c088c85b35cd52f06017c/avogadro-1.98.1-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,366   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/99/35/98dc474ffca2ca94bf15292ea4548f35596d2ff00bb7b75cc6b0673c1dc3/avogadro-1.98.1-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,367   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/de/01/5363fe4e3824f147749055610d4bdd692e5a5f71ef66ed2db40de7eefadd/avogadro-1.98.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,368   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/c5/b9/da1f0b59095da66c7804223894f637c2279d0c331d0ed07c80af1fa06363/avogadro-1.98.1-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,369   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/87/fd/ce2d8ba692c1fc08af03277e692cef3bfa7d0132bd9b88e341f04a1857dc/avogadro-1.102.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,370   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/bb/ad/8cb1fcedd463f907aa7f4171674c20043189b06e56507911673cc554323e/avogadro-1.102.0-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,370   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/97/3e/7f778bd236b7880570ff0d305a420d6be139e7ccd203652c23b300d35ad8/avogadro-1.102.0-cp310-cp310-manylinux_2_26_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,371   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/28/7c/66521c173517d3a866dbb686a63c67f833e5b3eaf7e607046a6730c20998/avogadro-1.102.0-cp310-cp310-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,372   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/9e/89/9613b6393b392e123fb4b5137eba749b7d8c43525330f59bab203f56ce04/avogadro-1.102.0-cp310-cp310-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,373   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/e5/cb/5143744155ca8c5c1913bb345f9fa00871b95dcc6f5163c25713a0a7bd50/avogadro-1.102.0-cp310-cp310-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,374   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/a4/3f/0f9e0aa718dbc53c75f3617186a288f4824fdea99f829e8530a4d526d271/avogadro-1.102.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,375   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/5e/71/4b285eddf32955ca7d1403da462b12e7f37d18e8d26d18f2e9a787f45961/avogadro-1.102.0-cp310-cp310-win_arm64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,376   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/e7/14/d0abf0caaa40870ba68d4639f0d9b55712b9e09404cd1671141c382403c8/avogadro-1.102.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,376   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/be/40/bb60afe162966c70b97d719b57c7fedbbe1dbb46874fa0df16bd798b0971/avogadro-1.102.0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,377   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/31/f5/362f44f4150b077b6569794885e7bf1738acf71b3af36200886955e1b2d1/avogadro-1.102.0-cp311-cp311-manylinux_2_26_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,378   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/e2/1b/27ea3160e4ea2c22a531732ce2c05fffa642800e81f8bb35796f9124b468/avogadro-1.102.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,379   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/94/0f/aee332e851ffcbefbcc1f412f14f17fce7a9e2b367f74ee1511dc0f5ba01/avogadro-1.102.0-cp311-cp311-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,379   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/b5/5e/56b3f5fe4a74c67d1db243f86b3cd64cb2f295cfe374d515311876aee1ab/avogadro-1.102.0-cp311-cp311-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,380   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/69/28/777ed93e64e50072f143e5411b7c0cd8aa89d50ba4e0cc7b03994e4ece6f/avogadro-1.102.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,381   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/71/57/700d678f657532eef56f9af324c028d3f871aa565c70c307cb3afb5cc5b4/avogadro-1.102.0-cp311-cp311-win_arm64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,382   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/60/f4/f53c7057f68c696e13fa1f476792bc7fa4c4f6da3e903d20e39e43495b76/avogadro-1.102.0-cp312-cp312-macosx_10_13_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,383   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/9c/1f/d8cefc3e70d3862120e24e9a65a06e9331ddd5fd9951d5f948e6286a5133/avogadro-1.102.0-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,384   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/14/8c/28f4e5f040e7c01ecbe958d0e9dfb483a71017126598cb55d0d449e1d093/avogadro-1.102.0-cp312-cp312-manylinux_2_26_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,385   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/63/d4/a80c85902f4d227c085b390bb67f89db317844967bfc905c404cf8c05c89/avogadro-1.102.0-cp312-cp312-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,386   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/d3/c8/0615411f45644b071e080966856ec9ffb741a561ec89a29a6edf59085d50/avogadro-1.102.0-cp312-cp312-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,387   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/31/ec/e6ee18f9481233ef9b1300b3c06728cdbe0dce9cc2881124277f50d42bf2/avogadro-1.102.0-cp312-cp312-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,387   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/34/02/30da063678febd690769a8137bec0f43a81cbbb65aa006434e7a773222bf/avogadro-1.102.0-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,388   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/de/c8/5ed2653da513683cd9b2954e6ae2b234b215e6223ecdfdddca7941b243be/avogadro-1.102.0-cp312-cp312-win_arm64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,389   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/70/50/d38dcda222723ddd9c9f179a8ddf863039e39744631a86c0a0a8ebbb0e19/avogadro-1.102.0-cp313-cp313-macosx_10_13_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,389   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/3a/14/89fd7999a2726c2723252d6594bd2433b41f1fed71b625e8fa7658b7a591/avogadro-1.102.0-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,390   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/34/c7/cfd0d70283a9b09ef99a402abe514d7839f226627405a563dce398fd3740/avogadro-1.102.0-cp313-cp313-manylinux_2_26_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,391   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/fb/de/a48dcae9b2391feca0e64cb6254d2f72453d7b0d5c6f8d4bc0858d79c63b/avogadro-1.102.0-cp313-cp313-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,392   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/3a/ba/86b6ef0f79605c0687b86d778629525ef6a93bfefe5f3cddc25fee955420/avogadro-1.102.0-cp313-cp313-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,393   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/9d/b9/b5bc4bc52de8c62ada5e9da081c34797240ff63addf7c80c17333a946b58/avogadro-1.102.0-cp313-cp313-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,394   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/dd/c8/8bd7b2df893ab7005e3cb0ff664f5adec820d3947d86b6599ba7d3133634/avogadro-1.102.0-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,395   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/69/ac/892986ad5a6067f298cbd801b4916ec40bb16676a11d7169f92843925756/avogadro-1.102.0-cp313-cp313-win_arm64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,395   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/cb/f3/a322e9afc9e029c3431b87b106400fd0115766d1f5b68eab9fb653690456/avogadro-1.102.0-cp314-cp314-macosx_10_15_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,396   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/33/62/a1b8b4a9825d789db7dc8b245c9bfef046b3780c58abd8a759e10d4eef37/avogadro-1.102.0-cp314-cp314-macosx_11_0_arm64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,397   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/0c/c6/092d701b875d38fefe74e23329e1f3f4cfdca8604368725928c801a92b81/avogadro-1.102.0-cp314-cp314-manylinux_2_26_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,398   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/5a/85/9f5605d88c1cd53cbdd91fe08380feb0e90886349dbc65e4e217966fc28d/avogadro-1.102.0-cp314-cp314-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,399   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/6b/6b/c8d07359c385e090f8e382b21cbbf4285e089d0a4ee26953c448ddf86e81/avogadro-1.102.0-cp314-cp314-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,400   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/d6/52/900cd1644fc160a1cd8550a4d5d6c906b37de8ddbdfa4abc360f9851294d/avogadro-1.102.0-cp314-cp314-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,400   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/97/0b/9a5e94de879dd44aff3fbb29f5a3288f26c7c37f7100310bcfabf949bc34/avogadro-1.102.0-cp314-cp314-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,401   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/a6/89/e2f17b40123aca42492b57c5d984467e0d028e22fb962702090c7eca4b36/avogadro-1.102.0-cp314-cp314-win_arm64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,402   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/14/40/fcb43123a01c1e779290f4bb1661888dd8209addf6173224693e1fee7357/avogadro-1.102.0-cp314-cp314t-macosx_10_15_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,402   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/fd/2c/e57834ecff323a69cd72be683071d506136a7ee7b0f43ac4406b35470a42/avogadro-1.102.0-cp314-cp314t-macosx_11_0_arm64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,403   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/95/80/65d2435b8aa3bb7e90fcf1244e77260df6e2a34ba71aea6b49d2a1048ddd/avogadro-1.102.0-cp314-cp314t-manylinux_2_26_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,404   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/83/e5/99cce7e325d354afcf93dc03c34f7b1fcbf0bb38a50329fe773eb8d37e7c/avogadro-1.102.0-cp314-cp314t-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,405   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/1c/8e/909a4ffdfcc3979c6bd93cd447c70830f0019bed9dbc00fd3a50d4b6a1da/avogadro-1.102.0-cp314-cp314t-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,406   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/ef/21/3a81a4118efe4583f657b01ae7ad53f03824f4f12ba94f3fbda7902747be/avogadro-1.102.0-cp314-cp314t-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,407   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/47/29/7de7dc7a03ebc85c4345e31d6accd6ff2f344dbb179b5501806236b669dc/avogadro-1.102.0-cp314-cp314t-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,408   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/52/de/fdd421bb3dcfb0fa7818a22ccb5c351edd0e84e00821a479724a6925cfb6/avogadro-1.102.0-cp314-cp314t-win_arm64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,409   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/bd/ce/63acac1365cb5571f97e986ed90a16b36b2b26e57cdd427650b9fef53c02/avogadro-1.102.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,409   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/bf/a6/5c138331f4b93991198caadb33b31ae587a03cc5e12c62364bca8971cacc/avogadro-1.102.0-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,410   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/2a/18/a781d685590e604ee5b19fe2d5eec5239e13cd70ffb79212ba84bec8d846/avogadro-1.102.0-cp38-cp38-manylinux_2_26_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,411   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/a1/9e/42010f509bb1af5b356119e20305924a704ff6145eca9517997d4aac60fc/avogadro-1.102.0-cp38-cp38-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,412   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/2b/eb/1d9be90893712e1a4e1e2590f646f154f3e870a677f225a8a2c22a7e209e/avogadro-1.102.0-cp38-cp38-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,413   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/ce/20/c23a6db02f40dc2b1474e144b4fed1e6180b94311b39d7dce135a1382dcc/avogadro-1.102.0-cp38-cp38-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,413   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/87/ca/29b4318c0b97705fa6e64cb4eb26bdb3a51350288f8cf5d32c99f88e448f/avogadro-1.102.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,414   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/4e/5a/2463d12743544a9c0608e0d17af8ef8046c0f06683399bbb32b3d8c61320/avogadro-1.102.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,415   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/24/11/15ac51bb02ca7000f039d1e3147c60fdb882fa11fb4fe4b3f7346cbf685e/avogadro-1.102.0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,416   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/bc/5a/818dae154a49d700bc45b70b62cb61b8cc62d3eca74e3b53477dc7d6191f/avogadro-1.102.0-cp39-cp39-manylinux_2_26_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,416   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/5e/28/8e234424f49a69f9bb17c70a6c96aaed30314aafa8f1d235a5fdb1a3a262/avogadro-1.102.0-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,417   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/d4/37/094fb0c2909fbbf90f35f4d951b8e6a84c1406a0a52832b94744760e849f/avogadro-1.102.0-cp39-cp39-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,418   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/22/ff/8fb7f00659c43dccbc52503c453385226eed37a4db58cc54ade3597a32b0/avogadro-1.102.0-cp39-cp39-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,419   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/b8/48/df7c7ee8be25e86b668a821a20a71be1a9376a96bf10ceaeba4db0750665/avogadro-1.102.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,420   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/c6/94/86513990b625c78b6f3f0e67bc825dcad54fc34d699c2ff9cf0e7841f836/avogadro-1.102.0-cp39-cp39-win_arm64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,421   Found link https://files.pythonhosted.org/packages/90/c1/ccc9ce5f4427607c4643ca6507551552a897b4c80d02f87f043014326d6e/avogadro-1.102.0.tar.gz (from https://pypi.org/simple/avogadro/), version: 1.102.0
2026-02-12T07:15:25,422   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/dc/3c/1b6f313d72e4814a5fd4aee5d873fb20a412df7f10b9d383d7757ee9a4c7/avogadro-1.102.1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,423   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/b5/5d/ceb5ee0bf0d34d3fab58da57d780a24494929f37cbbaf9727b6808f1bc5b/avogadro-1.102.1-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,424   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/c0/87/5654671c31c45361c5a581378dd42a176614f245e4e58f48150763281ffa/avogadro-1.102.1-cp310-cp310-manylinux_2_26_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,424   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/4d/af/08c2e780910bf841b4ffc3939fbcd87509e4d252cde76bc18394fcc4fa86/avogadro-1.102.1-cp310-cp310-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,425   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/94/55/9a828109eddfa6847609f67be65c229c265fa0e7743374946bfb1ef8aa08/avogadro-1.102.1-cp310-cp310-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,426   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/71/b9/abb132c09ab31d14bffe04c3435f052b0c7f285b56d884b659a8bc6c985b/avogadro-1.102.1-cp310-cp310-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,427   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/ca/79/193074ba2a312985d6cdd05565276f1ecf4df48a2c2af9876d88788837cb/avogadro-1.102.1-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,427   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/c9/b6/591026bec60e85d49a3f597910c23224dc8058d1a66cc5b043b9f9d839cc/avogadro-1.102.1-cp310-cp310-win_arm64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,428   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/d7/27/fd10ec7f88048b16c75de754abdb1fdee6c091a5c5b44f1286a2e48aac48/avogadro-1.102.1-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,429   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/45/75/40f1f2886a6024bd51f98035601ce269c846a4c2b5a76eacc867f8d9dedf/avogadro-1.102.1-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,430   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/f0/10/b65e04c8d882c2746b4689ee406a0ce17e22008dedca735b667f535953be/avogadro-1.102.1-cp311-cp311-manylinux_2_26_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,431   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/87/26/0b03546cf97558159d061ad220b08fa83af6e7b20f26b490138a6cc0659b/avogadro-1.102.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,432   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/76/03/839775e1840a185cbc60e087eed11187390e1ea855f96075484153e3481f/avogadro-1.102.1-cp311-cp311-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,433   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/22/5a/c38f5212222326fe3f8acf0b3f104fcab7983393aa9ecbfbd71ffedc7a3c/avogadro-1.102.1-cp311-cp311-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,433   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/3f/e6/e27df5315b13428937e09a68d1c0fdd0e448c1c2fa70c9a3a11c632c6de5/avogadro-1.102.1-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,434   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/11/fd/73ffeeb983a6f6d1d0769c508573aa8d249300e7bcfa69b9be2c5577d5ad/avogadro-1.102.1-cp311-cp311-win_arm64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,435   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/fc/f0/b14842ea7a15ab0283db187287e7724ac0c24aa46c540bd2e35a6cac41ca/avogadro-1.102.1-cp312-cp312-macosx_10_13_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,436   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/49/c4/689d91f0dd876566fd555e3303f4b84102ca193a513c9fa2e9f0c1c0299e/avogadro-1.102.1-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,437   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/26/af/10087e4f4fd97360a558eb295c7ed16e5ba3bef29925824ce9b5e080d5cf/avogadro-1.102.1-cp312-cp312-manylinux_2_26_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,438   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/01/ad/1173aa7d8ceebe41bd3ef9993a039060db0a64d7b2bae9f04844dd6f9e22/avogadro-1.102.1-cp312-cp312-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,438   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/8f/cf/35c63bbc0cdf5d4df9a61d1a138e92942a9bf6d25a6ade542330ecc5be89/avogadro-1.102.1-cp312-cp312-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,439   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/c1/a8/9f7ebf631e0973d6833fac16edc255528278213844702de69d5cd56a5689/avogadro-1.102.1-cp312-cp312-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,440   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/57/56/aae0bc4c7832b4e204f81c2f87ac7e49ae9717a0ac13ee78776f8e06ef97/avogadro-1.102.1-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,441   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/c9/39/eeaaa0fca5387a886a49ab301ff2e8807e3536a736c55e7fd9fd1240c700/avogadro-1.102.1-cp312-cp312-win_arm64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,442   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/0c/24/20d42adee98c97408aef62e57f9ad4a1028bed232de72f384a2d8d38f4fb/avogadro-1.102.1-cp313-cp313-macosx_10_13_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,443   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/34/18/d8b1513fb190303e5b5b99066deefe80afbd026b879fa5eed7a9309a2cfd/avogadro-1.102.1-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,444   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/9f/aa/9259f18f02c6004078d37c991a534532c29073e2aeaf84247756bdea40c0/avogadro-1.102.1-cp313-cp313-manylinux_2_26_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,444   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/4e/3d/5de6c1a9d029fe28c9d365f71bfb704e592aaf71a8e9b13e6ce4fb475474/avogadro-1.102.1-cp313-cp313-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,445   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/e2/8c/de6a118c26b5960c79307514621199d84ab6edd2966bbde4284e0468ad92/avogadro-1.102.1-cp313-cp313-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,446   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/8d/36/9a32ba0088ced2f35c6eb9e78e7dab843073938208559fcd7e54a9aed13a/avogadro-1.102.1-cp313-cp313-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,447   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/53/8b/a87a2cfa541265a4cf0b5672cdfc5421757b4d4c2654aa262cc89b71feae/avogadro-1.102.1-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,448   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/41/d6/b215cde376a7e7ff1c5a2ecf427e3aa10355d3bc6c1b5b0e30318ddd52f5/avogadro-1.102.1-cp313-cp313-win_arm64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,448   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/5b/38/ff75598f3e0bc48a4659894eeece2d773978c5d26385d751635811f494ca/avogadro-1.102.1-cp314-cp314-macosx_10_15_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,449   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/fc/5e/43bbc63546d7f66c75fd50d389f9512ecf731230eb34d4905acf1165d4df/avogadro-1.102.1-cp314-cp314-macosx_11_0_arm64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,450   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/99/39/ce0d380c28bec4daff103d5b3577371912f196af1a07953de8a6a46a1527/avogadro-1.102.1-cp314-cp314-manylinux_2_26_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,451   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/62/da/b007ae31b2fd3a0c8eeac4879e2dee09f69d9bba5a5b5b52d576d65b35a6/avogadro-1.102.1-cp314-cp314-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,451   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/8e/58/aec8afa16587db8641b25bb2f1be6d598b0e10eaf671221faaa415f0b2eb/avogadro-1.102.1-cp314-cp314-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,452   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/43/a8/100bbc0a6976d39a2f44c846974abbbb3e3bd951d543bc9d99f6eefeb7be/avogadro-1.102.1-cp314-cp314-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,453   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/db/d1/5dfad33d9bc6f0c9d7ebfe259e8e173b027619192cc7ae32437c1dae68eb/avogadro-1.102.1-cp314-cp314-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,454   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/ae/1f/942678d3390a4158bc33ef5287f000e28d031641ccb6ddf4f17010732acd/avogadro-1.102.1-cp314-cp314-win_arm64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,455   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/24/c0/b5a156e38f0d9ad34b28dfddfb68b05a3cfb61c2fb41616e038e8deb32df/avogadro-1.102.1-cp314-cp314t-macosx_10_15_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,455   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/31/d4/6023e533128b405b639904004f361a731177a21debd4f1cafe56a13a1ec8/avogadro-1.102.1-cp314-cp314t-macosx_11_0_arm64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,456   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/61/45/f47a542500eaee9336ffbe3544a0b44bf9e7716b8d9b138df655795893ff/avogadro-1.102.1-cp314-cp314t-manylinux_2_26_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,457   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/38/39/cf66351e3760bcec7fad49e02c02f015f16901ef8b0d1bf8d9063f7d6105/avogadro-1.102.1-cp314-cp314t-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,458   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/ab/dc/6b8fa3db7671558caa3030741723dc7fcf21830d97347b862bea40fa6ca2/avogadro-1.102.1-cp314-cp314t-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,459   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/26/c9/e9e855a6a61ad559f193a9867abfe954f5b53f55bbff8511450385fb3a93/avogadro-1.102.1-cp314-cp314t-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,459   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/9b/01/105309a1e91af90e77b136f237a64a0af7ebca6544ac62278797432c113b/avogadro-1.102.1-cp314-cp314t-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,460   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/69/35/fea1b5cae4b45bad2389b535a3f48a6ecb9c57e4e8360acb2ef0237a0909/avogadro-1.102.1-cp314-cp314t-win_arm64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,461   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/1f/87/c7cc3473e171f80e0af70ceb5816c2b7cac230e1fb842d497ea08201bd19/avogadro-1.102.1-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,462   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/5e/8a/07bd887871023a1fee78b9f504d72280b4a9469063d0d29dca25b12c2648/avogadro-1.102.1-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,463   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/00/ed/ec7d60c62d117fa7e60501d49748db25811b3c3e8ddb748d7244e952c92c/avogadro-1.102.1-cp38-cp38-manylinux_2_26_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,463   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/aa/11/8551ead81923e10ab1ed77df1ffa5eac537752a0a7c659c75f13ee556c1a/avogadro-1.102.1-cp38-cp38-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,464   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/f6/a9/be892c6b32062abe6531f4e1da689e77df48062636db1cacb41eff2af3e0/avogadro-1.102.1-cp38-cp38-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,465   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/49/28/888174aec82f15363f907a984473663685359c25032dfc9b309076be2e98/avogadro-1.102.1-cp38-cp38-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,466   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/33/8d/abbd6fb2e21dac2fcf81b1e3d283cca7b761b3701534bf3dec1bd7e19476/avogadro-1.102.1-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,466   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/fc/af/6ec1e47a3193791ede445be1d4ca06fe2da63bd036fa3448e64c4b7330df/avogadro-1.102.1-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,467   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/f2/5d/4b2f67289eba9e6608e01879ae082fa21d7a6aff410ca4ea69a647a047dd/avogadro-1.102.1-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,468   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/b4/1b/6dd6ee9ddda60306a0123076e54159f2bd9258fd04af3e37f6927e4897c7/avogadro-1.102.1-cp39-cp39-manylinux_2_26_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,469   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/20/0d/ae97642132c222fe68785b7ba4592074919e289437c7b23b025107def9ff/avogadro-1.102.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,470   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/83/a4/ef396088944ac64c8179d5d89248ce1e5eb5b89434d9592b05ae8bcd90e8/avogadro-1.102.1-cp39-cp39-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,470   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/0d/fe/c9fa9fde74b640d781f19e900c33dde680a21e5b7ad8750520dc1691d4d2/avogadro-1.102.1-cp39-cp39-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,471   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/bf/11/b09329c1e8aaa2302758b27e98ffdfa3e01a4ea8022a5dc91311856466b0/avogadro-1.102.1-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,472   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/cb/3e/b4f8732e061dfb627a804f66530b38059cde7260150dfdf0d08e8b965281/avogadro-1.102.1-cp39-cp39-win_arm64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,473   Found link https://files.pythonhosted.org/packages/ee/76/65410e0873cfdf149642b6bccee0de418913bae268ef7fa9907eebf6b9d2/avogadro-1.102.1.tar.gz (from https://pypi.org/simple/avogadro/), version: 1.102.1
2026-02-12T07:15:25,473   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/ff/d2/0bbfce85ea8fb463d9957ba222129dd9192d98851aa61cdf714794750a98/avogadro-1.103.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,474   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/73/46/6af7f8f25994a3ce72ca27088e0f1076e84dda4b0bb33e334946ce591a7c/avogadro-1.103.0-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,475   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/74/7f/a9df1aba9294880113ff8d4d0a2eb4a35700b4fe5c2394770cac560b4d16/avogadro-1.103.0-cp310-cp310-manylinux_2_26_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,476   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/39/52/99890e00f09c5a07e414d4f2a6b111ce9c3387dc2d93e2f352458c039064/avogadro-1.103.0-cp310-cp310-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,476   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/a4/5a/7089c6f3e6710ca95e397da446581502f9865468579d92654cfa0ac2f666/avogadro-1.103.0-cp310-cp310-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,477   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/d6/f8/ab9b59ea73e1cdfd19654429a8819d056809dc9e44680accaee81ae30221/avogadro-1.103.0-cp310-cp310-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,478   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/56/71/e59a9be1bc7f47b47fca83f23ec7acfb6af617d66885a388e39268937253/avogadro-1.103.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,479   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/d2/be/b6567ea97cd952f24b0cb3979a7faf89c55d78fa89d0f2ce0056162f8e93/avogadro-1.103.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,479   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/46/8b/5d492cb893b253d7bde64e0219df8fd376d56ae6df3a1a7f1fca6d9f2ab5/avogadro-1.103.0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,480   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/03/3d/7d30da495664e191c617e0e2710faaa9d4c6b664ae783889765e65df5771/avogadro-1.103.0-cp311-cp311-manylinux_2_26_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,481   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/79/fa/59bde1ca0b3385a6072df12b69d6c10c525802943ca13758f4039869b8a8/avogadro-1.103.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,482   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/80/6b/d243d9c912c7784db85bcb8ef3e0a9c0dc2958e40148d7f20b752f45eac0/avogadro-1.103.0-cp311-cp311-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,482   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/b5/5b/5b2433cd1fa9bc9ad10b92860932cc2cf681e872b78dfe2e973d41f3d1aa/avogadro-1.103.0-cp311-cp311-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,483   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/aa/55/8fa396a611c9bf39df7e3b6a6dc81f2e676bff00683c1c22f1b6e23bfc8f/avogadro-1.103.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,484   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/5d/f4/b1ddf08d4f9b1539d5451bb77653ab9e3d76684b8cd5804f30d3d3151b82/avogadro-1.103.0-cp312-cp312-macosx_10_13_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,485   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/4e/d0/6d4b3d3d1ddf29061b86d57d70e780d79efb72497fc5cd450148847a7d82/avogadro-1.103.0-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,485   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/9a/d9/cb5de1eb44e011794c06ad3e995503c6f125d5360f5d96ec981225e629f4/avogadro-1.103.0-cp312-cp312-manylinux_2_26_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,486   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/3b/db/f65d0e056233f345376065931e19d9302b0dba4697859938af47293c39ad/avogadro-1.103.0-cp312-cp312-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,487   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/58/e0/69850ab18f8b010ce674d9ca052cdf4930aaaac25289cc17768d60e382cf/avogadro-1.103.0-cp312-cp312-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,488   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/2c/1d/f84faa33f2d3848fbdf99bfcec6c14ab533f6cf8619c3e96d8ff60cdbdcb/avogadro-1.103.0-cp312-cp312-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,489   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/64/a6/0afb2ad8fdc368bd7417b0f2bfa8fbadbaf6564ad5f503a424a473838bc2/avogadro-1.103.0-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,490   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/25/bb/edb9f4896d621e7ddda07440069840219c718fa5060a8887663b6915e309/avogadro-1.103.0-cp313-cp313-macosx_10_13_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,491   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/9f/6d/883d27fe10c98561b0ddcbe6690d1a5d04dec594db7a1ed5432ef91f9b52/avogadro-1.103.0-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,492   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/05/4c/896dd42c47d8482fe5b49ab668faf027435419c4cdd3beb9fc583cc9d71e/avogadro-1.103.0-cp313-cp313-manylinux_2_26_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,493   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/48/28/de42ea6eb0aa43f83af67df45b2122371ec8b853f555647fbca746987830/avogadro-1.103.0-cp313-cp313-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,494   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/d4/30/2b6a2f0e02f91f00261755b5f138df2b576c05413bf564feb4c2c956e26e/avogadro-1.103.0-cp313-cp313-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,494   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/d3/7e/2c5aa15ba472a2f8574efa5071c154af4dcfc84ad91b1488ba3e019d58d1/avogadro-1.103.0-cp313-cp313-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,495   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/94/f6/2b997bb55a177581000e28dd2be21d663476ff02b618c7f28f44d3f08d30/avogadro-1.103.0-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,496   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/6f/b2/86512d8d60c2b6c0f2a2a087557cafa3439567cc739dd7c344201c5f9eb7/avogadro-1.103.0-cp314-cp314-macosx_10_15_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,497   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/8f/db/037843aa4fe62bb61ab1ce3ec7438f15363b6dc81042c44c453287dad3de/avogadro-1.103.0-cp314-cp314-macosx_11_0_arm64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,497   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/27/8a/4a620fba83ddb66c4f814018f802a3288f4f2cc7fc038f18b6d959f686d4/avogadro-1.103.0-cp314-cp314-manylinux_2_26_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,498   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/d4/35/d05009d7c22758f2dbe8dde987eceb7d9455337fbb4374709ad76115bc21/avogadro-1.103.0-cp314-cp314-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,499   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/fe/e1/5a3f690f3f9928188fcc041d7f6ea6c7b689da9a26178c560f43c91da5ca/avogadro-1.103.0-cp314-cp314-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,500   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/dd/8b/fea3ae504c60f7f919a289ad9f480b37fbc0f0360053b5556824d228551e/avogadro-1.103.0-cp314-cp314-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,501   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/b5/e4/bb0bdbd4e6ea616f372f2849829661aa845fa99ecb11f4c5faa8186591f9/avogadro-1.103.0-cp314-cp314-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,502   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/0a/84/2d134e943de191a583a3cecd9a6e3c7b48c7e3c5b694bda3d76a75ede37c/avogadro-1.103.0-cp314-cp314t-macosx_10_15_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,502   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/cc/c6/ac69bd0d87c8c0c722fa95a6d1cb8e9f427fa36756b9ea901a84a969b736/avogadro-1.103.0-cp314-cp314t-macosx_11_0_arm64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,503   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/4b/a6/f15c1c4062b6e361bf55167fbe916fae03f39af4752770f469e1aa4780bf/avogadro-1.103.0-cp314-cp314t-manylinux_2_26_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,504   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/d1/94/a58d2a1e3f62a43e405da0549f091a69bdaca1b30a09d80b759d56c8f72a/avogadro-1.103.0-cp314-cp314t-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,505   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/1d/eb/4ad174acf46cf5a8956075ece83795edb9407aad09cbeac20fbc0e1b89fe/avogadro-1.103.0-cp314-cp314t-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,506   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/0e/1d/21dd9e150971524e60884d8e7a254649ea07fb60c557ac872daab168932f/avogadro-1.103.0-cp314-cp314t-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,506   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/f8/b4/0d0cec5168e401d3c7b816eabdd8f60d22c8d24ffe9f817e00445d6a5ed1/avogadro-1.103.0-cp314-cp314t-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,507   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/bf/d0/39b9c6f31090115f465b83656bb75842dd7eb5e0d5bc9ae4f5356503f4ed/avogadro-1.103.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,508   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/32/9b/b6901d351dbb1b1bc89e74826b33384a844b601c16b5107c3feff5937fad/avogadro-1.103.0-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,508   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/93/91/337e7d7ad64dffe240551d1707164974927dd49587dd5431b34e22541f48/avogadro-1.103.0-cp38-cp38-manylinux_2_26_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,509   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/b9/11/8e2f895de3b9f2ad13d760fc53d8d089ea50d66f40020c8a632d98102f38/avogadro-1.103.0-cp38-cp38-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,510   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/19/9f/0ad64c8c77d72c0dbe20327d6543a2fa7852343d51b5df191bd9ac0c61a7/avogadro-1.103.0-cp38-cp38-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,511   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/a7/b7/c3664f217720b7687d0ec5efafc7ccbcb2f3536f6d3e9331010e562430cf/avogadro-1.103.0-cp38-cp38-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,512   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/8f/f6/912dbfca4f1f11e597b1aae4fc65789ee19b7cca5c020706cd40e7f1a94c/avogadro-1.103.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,513   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/af/eb/6b40abb0cbce0d0fce4f769d274e508cf1101f374d7a70418ecf17ef9096/avogadro-1.103.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,514   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/f2/40/125017b6546888d5c3e3517c92ae08b8d964c4ced58af820320c99db2190/avogadro-1.103.0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,514   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/a8/15/7b9b2e4d6e7d16d7edf421a58652b20bca19cce922e374c22b270288d203/avogadro-1.103.0-cp39-cp39-manylinux_2_26_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,515   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/67/c3/594e2f9e715ec19f59c6becd57bee526172cfcd0a12f99ff33b306cc15da/avogadro-1.103.0-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,516   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/af/dc/0b1fcb6df25991d805f29fb0a5052bad9506ccd24406c9bd39321e0d54aa/avogadro-1.103.0-cp39-cp39-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,517   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/52/a2/7d1fd9539338a4e862fe6f1e12ece5c828db5ecab5934d372724da410f8a/avogadro-1.103.0-cp39-cp39-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,518   Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/a1/d4/2c6d683a3cddc4f4b3916e9ebf4395e04bfe02d207e2eee320a17d76ee37/avogadro-1.103.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/avogadro/)
2026-02-12T07:15:25,518   Found link https://files.pythonhosted.org/packages/55/14/711ea02a22e622346e8e6ddf01f238f438038b7c5efd2bfab4d5d4398650/avogadro-1.103.0.tar.gz (from https://pypi.org/simple/avogadro/), version: 1.103.0
2026-02-12T07:15:25,520 Fetching project page and analyzing links: https://www.piwheels.org/simple/avogadro/
2026-02-12T07:15:25,520 Getting page https://www.piwheels.org/simple/avogadro/
2026-02-12T07:15:25,522 Found index url https://www.piwheels.org/simple
2026-02-12T07:15:25,747 Fetched page https://www.piwheels.org/simple/avogadro/ as text/html
2026-02-12T07:15:25,758   Skipping link: No binaries permitted for avogadro: https://archive1.piwheels.org/simple/avogadro/avogadro-1.102.1-cp313-cp313-linux_armv6l.whl#sha256=2bb1d5ebe619b436a3772c8d089a9099f7fd3dfca29f4c6f9542dc29916bcedb (from https://www.piwheels.org/simple/avogadro/)
2026-02-12T07:15:25,759   Skipping link: No binaries permitted for avogadro: https://archive1.piwheels.org/simple/avogadro/avogadro-1.102.1-cp313-cp313-linux_armv7l.whl#sha256=2bb1d5ebe619b436a3772c8d089a9099f7fd3dfca29f4c6f9542dc29916bcedb (from https://www.piwheels.org/simple/avogadro/)
2026-02-12T07:15:25,760   Skipping link: No binaries permitted for avogadro: https://archive1.piwheels.org/simple/avogadro/avogadro-1.102.0-cp311-cp311-linux_armv6l.whl#sha256=d21176cdb79c1d63c7756b3cf473909365a88175fdfe6bf8aaf6c945ceadce69 (from https://www.piwheels.org/simple/avogadro/)
2026-02-12T07:15:25,761   Skipping link: No binaries permitted for avogadro: https://archive1.piwheels.org/simple/avogadro/avogadro-1.102.0-cp311-cp311-linux_armv7l.whl#sha256=d21176cdb79c1d63c7756b3cf473909365a88175fdfe6bf8aaf6c945ceadce69 (from https://www.piwheels.org/simple/avogadro/)
2026-02-12T07:15:25,761   Skipping link: No binaries permitted for avogadro: https://archive1.piwheels.org/simple/avogadro/avogadro-1.102.0-cp313-cp313-linux_armv6l.whl#sha256=d7c7699136a74edaecd9a5dca43b58dc90abe8d0b1bb4e028cf474c8bb71762e (from https://www.piwheels.org/simple/avogadro/)
2026-02-12T07:15:25,762   Skipping link: No binaries permitted for avogadro: https://archive1.piwheels.org/simple/avogadro/avogadro-1.102.0-cp313-cp313-linux_armv7l.whl#sha256=d7c7699136a74edaecd9a5dca43b58dc90abe8d0b1bb4e028cf474c8bb71762e (from https://www.piwheels.org/simple/avogadro/)
2026-02-12T07:15:25,763 Skipping link: not a file: https://www.piwheels.org/simple/avogadro/
2026-02-12T07:15:25,764 Skipping link: not a file: https://pypi.org/simple/avogadro/
2026-02-12T07:15:25,799 Given no hashes to check 1 links for project 'avogadro': discarding no candidates
2026-02-12T07:15:25,856 Collecting avogadro==1.103.0
2026-02-12T07:15:25,859   Created temporary directory: /tmp/pip-unpack-ld4rsvmq
2026-02-12T07:15:26,505   Downloading avogadro-1.103.0.tar.gz (4.9 MB)
2026-02-12T07:15:32,088   Added avogadro==1.103.0 from https://files.pythonhosted.org/packages/55/14/711ea02a22e622346e8e6ddf01f238f438038b7c5efd2bfab4d5d4398650/avogadro-1.103.0.tar.gz to build tracker '/tmp/pip-build-tracker-ujkcndwt'
2026-02-12T07:15:32,096   Created temporary directory: /tmp/pip-build-env-v6y1niw5
2026-02-12T07:15:32,101   Installing build dependencies: started
2026-02-12T07:15:32,103   Running command pip subprocess to install build dependencies
2026-02-12T07:15:33,878   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-02-12T07:15:35,096   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-02-12T07:15:35,178   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-02-12T07:15:37,622   Collecting setuptools>=40.8.0
2026-02-12T07:15:37,647     Using cached setuptools-82.0.0-py3-none-any.whl (1.0 MB)
2026-02-12T07:15:37,997   Collecting wheel
2026-02-12T07:15:38,015     Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB)
2026-02-12T07:15:38,175   Collecting scikit-build
2026-02-12T07:15:38,201     Using cached https://www.piwheels.org/simple/scikit-build/scikit_build-0.18.1-py3-none-any.whl (85 kB)
2026-02-12T07:15:38,489   Collecting pybind11
2026-02-12T07:15:38,526     Using cached https://www.piwheels.org/simple/pybind11/pybind11-3.0.1-py3-none-any.whl (293 kB)
2026-02-12T07:15:38,874   Collecting ninja
2026-02-12T07:15:38,883     Using cached ninja-1.13.0-py3-none-manylinux_2_28_armv7l.manylinux_2_31_armv7l.whl (146 kB)
2026-02-12T07:15:39,155   Collecting packaging>=24.0
2026-02-12T07:15:39,175     Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB)
2026-02-12T07:15:39,363   Collecting distro
2026-02-12T07:15:39,391     Using cached https://www.piwheels.org/simple/distro/distro-1.9.0-py3-none-any.whl (20 kB)
2026-02-12T07:15:44,803   Installing collected packages: setuptools, pybind11, packaging, ninja, distro, wheel, scikit-build
2026-02-12T07:15:49,131     Creating /tmp/pip-build-env-v6y1niw5/overlay/local/bin
2026-02-12T07:15:49,134     changing mode of /tmp/pip-build-env-v6y1niw5/overlay/local/bin/pybind11-config to 755
2026-02-12T07:15:49,540     changing mode of /tmp/pip-build-env-v6y1niw5/overlay/local/bin/distro to 755
2026-02-12T07:15:49,693     changing mode of /tmp/pip-build-env-v6y1niw5/overlay/local/bin/wheel to 755
2026-02-12T07:15:50,072   Successfully installed distro-1.9.0 ninja-1.13.0 packaging-26.0 pybind11-3.0.1 scikit-build-0.18.1 setuptools-82.0.0 wheel-0.46.3
2026-02-12T07:15:50,565   Installing build dependencies: finished with status 'done'
2026-02-12T07:15:50,574   Getting requirements to build wheel: started
2026-02-12T07:15:50,575   Running command Getting requirements to build wheel
2026-02-12T07:15:51,805   /tmp/pip-build-env-v6y1niw5/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:287: UserWarning: Unknown distribution option: 'use_scm_version'
2026-02-12T07:15:51,805     warnings.warn(msg)
2026-02-12T07:15:51,827   /tmp/pip-build-env-v6y1niw5/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-02-12T07:15:51,827   !!

2026-02-12T07:15:51,829           ********************************************************************************
2026-02-12T07:15:51,830           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-02-12T07:15:51,831           License :: OSI Approved :: BSD License

2026-02-12T07:15:51,833           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-02-12T07:15:51,834           ********************************************************************************

2026-02-12T07:15:51,835   !!
2026-02-12T07:15:51,836     self._finalize_license_expression()
2026-02-12T07:15:52,072   Getting requirements to build wheel: finished with status 'done'
2026-02-12T07:15:52,104   Installing backend dependencies: started
2026-02-12T07:15:52,106   Running command pip subprocess to install backend dependencies
2026-02-12T07:15:54,006   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-02-12T07:15:54,960   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-02-12T07:15:55,033   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-02-12T07:15:55,952   Collecting setuptools_scm
2026-02-12T07:15:55,974     Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-9.2.2-py3-none-any.whl (62 kB)
2026-02-12T07:15:56,238   Collecting packaging>=20
2026-02-12T07:15:56,258     Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB)
2026-02-12T07:15:58,369   Collecting setuptools
2026-02-12T07:15:58,414     Using cached setuptools-82.0.0-py3-none-any.whl (1.0 MB)
2026-02-12T07:16:03,104   Installing collected packages: setuptools, packaging, setuptools_scm
2026-02-12T07:16:07,794     Creating /tmp/pip-build-env-v6y1niw5/normal/local/bin
2026-02-12T07:16:07,797     changing mode of /tmp/pip-build-env-v6y1niw5/normal/local/bin/setuptools-scm to 755
2026-02-12T07:16:07,825   Successfully installed packaging-26.0 setuptools-82.0.0 setuptools_scm-9.2.2
2026-02-12T07:16:08,294   Installing backend dependencies: finished with status 'done'
2026-02-12T07:16:08,296   Created temporary directory: /tmp/pip-modern-metadata-gmqdwecn
2026-02-12T07:16:08,299   Preparing metadata (pyproject.toml): started
2026-02-12T07:16:08,301   Running command Preparing metadata (pyproject.toml)
2026-02-12T07:16:09,477   toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section
2026-02-12T07:16:09,510   toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section
2026-02-12T07:16:09,516   /tmp/pip-build-env-v6y1niw5/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-02-12T07:16:09,517   !!

2026-02-12T07:16:09,518           ********************************************************************************
2026-02-12T07:16:09,519           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-02-12T07:16:09,520           License :: OSI Approved :: BSD License

2026-02-12T07:16:09,522           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-02-12T07:16:09,523           ********************************************************************************

2026-02-12T07:16:09,524   !!
2026-02-12T07:16:09,525     self._finalize_license_expression()
2026-02-12T07:16:09,561   toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section
2026-02-12T07:16:09,584   toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section
2026-02-12T07:16:09,590   running dist_info
2026-02-12T07:16:09,601   creating /tmp/pip-modern-metadata-gmqdwecn/avogadro.egg-info
2026-02-12T07:16:09,603   writing /tmp/pip-modern-metadata-gmqdwecn/avogadro.egg-info/PKG-INFO
2026-02-12T07:16:09,607   writing dependency_links to /tmp/pip-modern-metadata-gmqdwecn/avogadro.egg-info/dependency_links.txt
2026-02-12T07:16:09,610   writing top-level names to /tmp/pip-modern-metadata-gmqdwecn/avogadro.egg-info/top_level.txt
2026-02-12T07:16:09,612   writing manifest file '/tmp/pip-modern-metadata-gmqdwecn/avogadro.egg-info/SOURCES.txt'
2026-02-12T07:16:09,667   listing git files failed - pretending there aren't any
2026-02-12T07:16:09,673   reading manifest file '/tmp/pip-modern-metadata-gmqdwecn/avogadro.egg-info/SOURCES.txt'
2026-02-12T07:16:09,676   adding license file 'LICENSE'
2026-02-12T07:16:09,679   writing manifest file '/tmp/pip-modern-metadata-gmqdwecn/avogadro.egg-info/SOURCES.txt'
2026-02-12T07:16:09,680   creating '/tmp/pip-modern-metadata-gmqdwecn/avogadro-1.103.0.dist-info'
2026-02-12T07:16:09,877   Preparing metadata (pyproject.toml): finished with status 'done'
2026-02-12T07:16:09,883   Source in /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a has version 1.103.0, which satisfies requirement avogadro==1.103.0 from https://files.pythonhosted.org/packages/55/14/711ea02a22e622346e8e6ddf01f238f438038b7c5efd2bfab4d5d4398650/avogadro-1.103.0.tar.gz
2026-02-12T07:16:09,884   Removed avogadro==1.103.0 from https://files.pythonhosted.org/packages/55/14/711ea02a22e622346e8e6ddf01f238f438038b7c5efd2bfab4d5d4398650/avogadro-1.103.0.tar.gz from build tracker '/tmp/pip-build-tracker-ujkcndwt'
2026-02-12T07:16:09,906 Created temporary directory: /tmp/pip-unpack-zgzmhrfz
2026-02-12T07:16:09,906 Building wheels for collected packages: avogadro
2026-02-12T07:16:09,913   Created temporary directory: /tmp/pip-wheel-dq7nx4t_
2026-02-12T07:16:09,914   Destination directory: /tmp/pip-wheel-dq7nx4t_
2026-02-12T07:16:09,917   Building wheel for avogadro (pyproject.toml): started
2026-02-12T07:16:09,918   Running command Building wheel for avogadro (pyproject.toml)
2026-02-12T07:16:10,932   toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section
2026-02-12T07:16:10,964   toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section
2026-02-12T07:16:10,976   /tmp/pip-build-env-v6y1niw5/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-02-12T07:16:10,977   !!

2026-02-12T07:16:10,979           ********************************************************************************
2026-02-12T07:16:10,979           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-02-12T07:16:10,981           License :: OSI Approved :: BSD License

2026-02-12T07:16:10,982           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-02-12T07:16:10,983           ********************************************************************************

2026-02-12T07:16:10,984   !!
2026-02-12T07:16:10,985     self._finalize_license_expression()


2026-02-12T07:16:11,119   --------------------------------------------------------------------------------
2026-02-12T07:16:11,120   -- Trying 'Ninja' generator
2026-02-12T07:16:11,121   --------------------------------
2026-02-12T07:16:11,122   ---------------------------
2026-02-12T07:16:11,122   ----------------------
2026-02-12T07:16:11,123   -----------------
2026-02-12T07:16:11,124   ------------
2026-02-12T07:16:11,124   -------
2026-02-12T07:16:11,125   --
2026-02-12T07:16:11,233   Not searching for unused variables given on the command line.
2026-02-12T07:16:11,936   -- The C compiler identification is GNU 12.2.0
2026-02-12T07:16:12,041   -- Detecting C compiler ABI info
2026-02-12T07:16:12,703   -- Detecting C compiler ABI info - done
2026-02-12T07:16:12,797   -- Check for working C compiler: /usr/bin/cc - skipped
2026-02-12T07:16:12,799   -- Detecting C compile features
2026-02-12T07:16:12,802   -- Detecting C compile features - done
2026-02-12T07:16:13,198   -- The CXX compiler identification is GNU 12.2.0
2026-02-12T07:16:13,285   -- Detecting CXX compiler ABI info
2026-02-12T07:16:14,072   -- Detecting CXX compiler ABI info - done
2026-02-12T07:16:14,157   -- Check for working CXX compiler: /usr/bin/c++ - skipped
2026-02-12T07:16:14,159   -- Detecting CXX compile features
2026-02-12T07:16:14,161   -- Detecting CXX compile features - done
2026-02-12T07:16:14,170   -- Configuring done
2026-02-12T07:16:14,191   -- Generating done
2026-02-12T07:16:14,268   -- Build files have been written to: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_cmake_test_compile/build
2026-02-12T07:16:14,279   --
2026-02-12T07:16:14,280   -------
2026-02-12T07:16:14,281   ------------
2026-02-12T07:16:14,281   -----------------
2026-02-12T07:16:14,282   ----------------------
2026-02-12T07:16:14,282   ---------------------------
2026-02-12T07:16:14,283   --------------------------------
2026-02-12T07:16:14,284   -- Trying 'Ninja' generator - success
2026-02-12T07:16:14,284   --------------------------------------------------------------------------------

2026-02-12T07:16:14,305   Configuring Project
2026-02-12T07:16:14,306     Working directory:
2026-02-12T07:16:14,307       /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-build
2026-02-12T07:16:14,307     Command:
2026-02-12T07:16:14,308       /usr/bin/cmake /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a -G Ninja -DCMAKE_MAKE_PROGRAM:FILEPATH=/usr/bin/ninja --no-warn-unused-cli -DCMAKE_INSTALL_PREFIX:PATH=/tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install -DPYTHON_VERSION_STRING:STRING=3.11.2 -DSKBUILD:INTERNAL=TRUE -DCMAKE_MODULE_PATH:PATH=/tmp/pip-build-env-v6y1niw5/overlay/local/lib/python3.11/dist-packages/skbuild/resources/cmake -DPYTHON_EXECUTABLE:PATH=/usr/bin/python3 -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python3.11 -DPYTHON_LIBRARY:PATH=/usr/lib/arm-linux-gnueabihf/libpython3.11.so -DPython_EXECUTABLE:PATH=/usr/bin/python3 -DPython_ROOT_DIR:PATH=/usr -DPython_FIND_REGISTRY:STRING=NEVER -DPython_INCLUDE_DIR:PATH=/usr/include/python3.11 -DPython3_EXECUTABLE:PATH=/usr/bin/python3 -DPython3_ROOT_DIR:PATH=/usr -DPython3_FIND_REGISTRY:STRING=NEVER -DPython3_INCLUDE_DIR:PATH=/usr/include/python3.11 -DCMAKE_MAKE_PROGRAM:FILEPATH=/usr/bin/ninja -DUSE_SPGLIB:BOOL=FALSE -DUSE_OPENGL:BOOL=FALSE -DUSE_QT:BOOL=FALSE -DUSE_MMTF:BOOL=FALSE -DUSE_PYTHON:BOOL=TRUE -DUSE_HDF5:BOOL=FALSE -DUSE_LIBARCHIVE:BOOL=FALSE -DUSE_LIBMSYM:BOOL=FALSE -DINSTALL_RUNTIME_DIR:PATH=avogadro -DINSTALL_LIBRARY_DIR:PATH=avogadro -DINSTALL_ARCHIVE_DIR:PATH=avogadro -Dpybind11_DIR:PATH=/tmp/pip-build-env-v6y1niw5/overlay/local/lib/python3.11/dist-packages/pybind11/share/cmake/pybind11 -DCMAKE_BUILD_TYPE:STRING=Release

2026-02-12T07:16:14,402   Not searching for unused variables given on the command line.
2026-02-12T07:16:14,827   -- The C compiler identification is GNU 12.2.0
2026-02-12T07:16:15,539   -- The CXX compiler identification is GNU 12.2.0
2026-02-12T07:16:15,659   -- Detecting C compiler ABI info
2026-02-12T07:16:16,295   -- Detecting C compiler ABI info - done
2026-02-12T07:16:16,377   -- Check for working C compiler: /usr/bin/cc - skipped
2026-02-12T07:16:16,379   -- Detecting C compile features
2026-02-12T07:16:16,381   -- Detecting C compile features - done
2026-02-12T07:16:16,417   -- Detecting CXX compiler ABI info
2026-02-12T07:16:17,018   -- Detecting CXX compiler ABI info - done
2026-02-12T07:16:17,094   -- Check for working CXX compiler: /usr/bin/c++ - skipped
2026-02-12T07:16:17,096   -- Detecting CXX compile features
2026-02-12T07:16:17,099   -- Detecting CXX compile features - done
2026-02-12T07:16:17,128   -- Performing Test HAVE_GCC_ERROR_RETURN_TYPE
2026-02-12T07:16:17,820   -- Performing Test HAVE_GCC_ERROR_RETURN_TYPE - Success
2026-02-12T07:16:17,879   -- Found Git: /usr/bin/git (found version "2.39.5")
2026-02-12T07:16:17,905   -- Could not use git to determine source version, using version 1.103.0
2026-02-12T07:16:18,008   -- Performing Test CMAKE_HAVE_LIBC_PTHREAD
2026-02-12T07:16:18,666   -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
2026-02-12T07:16:18,672   -- Found Threads: TRUE
2026-02-12T07:16:18,676   -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY
2026-02-12T07:16:19,494   -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success
2026-02-12T07:16:19,499   -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY
2026-02-12T07:16:20,187   -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success
2026-02-12T07:16:20,189   -- Performing Test COMPILER_HAS_DEPRECATED_ATTR
2026-02-12T07:16:20,866   -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
2026-02-12T07:16:25,825   -- Found Python: /usr/bin/python3 (found version "3.11.2") found components: Interpreter Development Development.Module Development.Embed
2026-02-12T07:16:26,111   -- Performing Test HAS_FLTO_AUTO
2026-02-12T07:16:27,259   -- Performing Test HAS_FLTO_AUTO - Success
2026-02-12T07:16:27,264   -- Found pybind11: /tmp/pip-build-env-v6y1niw5/overlay/local/lib/python3.11/dist-packages/pybind11/include (found version "3.0.1")
2026-02-12T07:16:27,303   -- Configuring done
2026-02-12T07:16:27,689   -- Generating done
2026-02-12T07:16:27,751   -- Build files have been written to: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-build
2026-02-12T07:16:28,260   [1/86] Building C object thirdparty/CMakeFiles/struct.dir/struct/struct_endian.c.o
2026-02-12T07:16:31,891   [2/86] Building C object thirdparty/CMakeFiles/struct.dir/struct/struct.c.o
2026-02-12T07:16:32,670   [3/86] Linking C static library thirdparty/libstruct.a
2026-02-12T07:16:33,867   [4/86] Building CXX object utilities/encodefile/CMakeFiles/encodefile.dir/encodefile.cxx.o
2026-02-12T07:16:35,252   [5/86] Linking CXX executable bin/encodefile
2026-02-12T07:16:39,732   [6/86] Building CXX object utilities/bodr/CMakeFiles/bodrparse.dir/bodrparse.cxx.o
2026-02-12T07:16:39,733   In file included from /usr/include/c++/12/vector:70,
2026-02-12T07:16:39,734                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/utilities.h:13,
2026-02-12T07:16:39,735                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/utilities/bodr/bodrparse.cxx:19:
2026-02-12T07:16:39,736   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >}; _Tp = Element; _Alloc = std::allocator<Element>]’:
2026-02-12T07:16:39,736   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<Element>::iterator’ changed in GCC 7.1
2026-02-12T07:16:39,737     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:16:39,738         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:16:39,739   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >}; _Tp = Element; _Alloc = std::allocator<Element>]’,
2026-02-12T07:16:39,740       inlined from ‘int main(int, char**)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/utilities/bodr/bodrparse.cxx:110:30:
2026-02-12T07:16:39,741   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Element*, std::vector<Element> >’ changed in GCC 7.1
2026-02-12T07:16:39,743     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:16:39,744         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:16:39,803   [7/86] Building CXX object utilities/resdata/CMakeFiles/resdataparse.dir/resdataparse.cxx.o
2026-02-12T07:16:41,013   [8/86] Linking CXX executable bin/resdataparse
2026-02-12T07:16:58,509   [9/86] Building CXX object avogadro/core/CMakeFiles/Core.dir/angleiterator.cpp.o
2026-02-12T07:17:04,262   [10/86] Building CXX object avogadro/core/CMakeFiles/Core.dir/atomutilities.cpp.o
2026-02-12T07:17:09,057   [11/86] Building CXX object avogadro/core/CMakeFiles/Core.dir/coordinateblockgenerator.cpp.o
2026-02-12T07:17:10,945   [12/86] Building CXX object avogadro/core/CMakeFiles/Core.dir/cube.cpp.o
2026-02-12T07:17:15,486   [13/86] Building CXX object avogadro/core/CMakeFiles/Core.dir/elements.cpp.o
2026-02-12T07:17:24,092   [14/86] Building CXX object avogadro/core/CMakeFiles/Core.dir/crystaltools.cpp.o
2026-02-12T07:17:24,093   In file included from /usr/include/c++/12/vector:70,
2026-02-12T07:17:24,094                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:12,
2026-02-12T07:17:24,095                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/crystaltools.h:11,
2026-02-12T07:17:24,096                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/crystaltools.cpp:6:
2026-02-12T07:17:24,097   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’:
2026-02-12T07:17:24,098   /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator’ changed in GCC 7.1
2026-02-12T07:17:24,099     523 |     vector<_Tp, _Alloc>::
2026-02-12T07:17:24,100         |     ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:24,101   In file included from /usr/include/c++/12/vector:64:
2026-02-12T07:17:24,102   In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:17:24,102       inlined from ‘void Avogadro::Core::Array<T>::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:179:19,
2026-02-12T07:17:24,103       inlined from ‘static bool Avogadro::Core::CrystalTools::setFractionalCoordinates(Avogadro::Core::Molecule&, const Avogadro::Core::Array<Eigen::Matrix<double, 3, 1> >&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/crystaltools.cpp:710:16,
2026-02-12T07:17:24,104       inlined from ‘static bool Avogadro::Core::CrystalTools::setFractionalCoordinates(Avogadro::Core::Molecule&, const Avogadro::Core::Array<Eigen::Matrix<double, 3, 1> >&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/crystaltools.cpp:700:6:
2026-02-12T07:17:24,106   /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:17:24,107    1032 |           _M_fill_insert(end(), __new_size - size(), __x);
2026-02-12T07:17:24,108         |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:24,109   In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:17:24,110       inlined from ‘void Avogadro::Core::Array<T>::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:179:19,
2026-02-12T07:17:24,111       inlined from ‘static bool Avogadro::Core::CrystalTools::fractionalCoordinates(const Avogadro::Core::Molecule&, Avogadro::Core::Array<Eigen::Matrix<double, 3, 1> >&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/crystaltools.cpp:681:16,
2026-02-12T07:17:24,116       inlined from ‘static bool Avogadro::Core::CrystalTools::fractionalCoordinates(const Avogadro::Core::Molecule&, Avogadro::Core::Array<Eigen::Matrix<double, 3, 1> >&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/crystaltools.cpp:674:6:
2026-02-12T07:17:24,126   /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:17:24,136    1032 |           _M_fill_insert(end(), __new_size - size(), __x);
2026-02-12T07:17:24,137         |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:24,137   In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:17:24,138       inlined from ‘void Avogadro::Core::Array<T>::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:179:19,
2026-02-12T07:17:24,139       inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.h:1186:27,
2026-02-12T07:17:24,140       inlined from ‘void Avogadro::Core::AtomTemplate<Molecule_T>::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/atom.h:304:32,
2026-02-12T07:17:24,141       inlined from ‘static bool Avogadro::Core::CrystalTools::buildSupercell(Avogadro::Core::Molecule&, unsigned int, unsigned int, unsigned int)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/crystaltools.cpp:589:32:
2026-02-12T07:17:24,142   /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:17:24,142    1032 |           _M_fill_insert(end(), __new_size - size(), __x);
2026-02-12T07:17:24,143         |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:34,231   [15/86] Building CXX object avogadro/core/CMakeFiles/Core.dir/dihedraliterator.cpp.o
2026-02-12T07:17:35,666   [16/86] Building CXX object avogadro/core/CMakeFiles/Core.dir/graph.cpp.o
2026-02-12T07:17:38,769   [17/86] Building CXX object thirdparty/CMakeFiles/pugixml.dir/pugixml/pugixml.cpp.o
2026-02-12T07:17:39,480   [18/86] Linking CXX static library thirdparty/libpugixml.a
2026-02-12T07:17:39,751   [19/86] Building CXX object avogadro/core/CMakeFiles/Core.dir/layer.cpp.o
2026-02-12T07:17:40,549   [20/86] Linking CXX executable bin/bodrparse
2026-02-12T07:17:48,069   [21/86] Building CXX object avogadro/core/CMakeFiles/Core.dir/layermanager.cpp.o
2026-02-12T07:17:49,280   [22/86] Building CXX object avogadro/core/CMakeFiles/Core.dir/gaussiansettools.cpp.o
2026-02-12T07:17:49,281   In file included from /usr/include/c++/12/vector:70,
2026-02-12T07:17:49,282                    from /usr/include/c++/12/functional:62,
2026-02-12T07:17:49,283                    from /usr/include/eigen3/Eigen/Core:85,
2026-02-12T07:17:49,284                    from /usr/include/eigen3/Eigen/Dense:1,
2026-02-12T07:17:49,285                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/matrix.h:10,
2026-02-12T07:17:49,286                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/variant.h:12,
2026-02-12T07:17:49,286                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/basisset.h:10,
2026-02-12T07:17:49,287                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussiansettools.h:11,
2026-02-12T07:17:49,288                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussiansettools.cpp:6:
2026-02-12T07:17:49,289   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’:
2026-02-12T07:17:49,290   /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2026-02-12T07:17:49,291     523 |     vector<_Tp, _Alloc>::
2026-02-12T07:17:49,292         |     ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:49,293   In file included from /usr/include/c++/12/vector:64:
2026-02-12T07:17:49,294   In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:49,295       inlined from ‘Avogadro::Core::GaussianSetTools::GaussianSetTools(Avogadro::Core::Molecule*)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussiansettools.cpp:22:29:
2026-02-12T07:17:49,295   /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:49,296    1032 |           _M_fill_insert(end(), __new_size - size(), __x);
2026-02-12T07:17:49,297         |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:49,605   [23/86] Building CXX object avogadro/core/CMakeFiles/Core.dir/gaussianset.cpp.o
2026-02-12T07:17:49,606   In file included from /usr/include/c++/12/vector:70,
2026-02-12T07:17:49,607                    from /usr/include/c++/12/functional:62,
2026-02-12T07:17:49,608                    from /usr/include/eigen3/Eigen/Core:85,
2026-02-12T07:17:49,609                    from /usr/include/eigen3/Eigen/Dense:1,
2026-02-12T07:17:49,610                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/matrix.h:10,
2026-02-12T07:17:49,611                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/variant.h:12,
2026-02-12T07:17:49,612                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/basisset.h:10,
2026-02-12T07:17:49,613                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.h:11,
2026-02-12T07:17:49,614                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:6:
2026-02-12T07:17:49,615   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2026-02-12T07:17:49,616   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2026-02-12T07:17:49,617     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:17:49,618         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:49,618   In file included from /usr/include/c++/12/vector:64:
2026-02-12T07:17:49,619   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:49,620       inlined from ‘unsigned int Avogadro::Core::GaussianSet::addGto(unsigned int, double, double)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:86:19:
2026-02-12T07:17:49,621   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:49,622    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:17:49,623         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:17:49,624   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:49,625       inlined from ‘unsigned int Avogadro::Core::GaussianSet::addGto(unsigned int, double, double)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:87:19:
2026-02-12T07:17:49,626   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:49,627    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:17:49,628         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:17:49,629   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
2026-02-12T07:17:49,630   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2026-02-12T07:17:49,636     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:17:49,646         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:49,646   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:49,647       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:49,648       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:318:28:
2026-02-12T07:17:49,649   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:49,650     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:49,651         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:49,652   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:49,653       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:49,654       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:328:28:
2026-02-12T07:17:49,655   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:49,656     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:49,657         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:49,658   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:49,659       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:329:28:
2026-02-12T07:17:49,660   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:49,661    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:17:49,661         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:17:49,662   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:49,663       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:330:28:
2026-02-12T07:17:49,664   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:49,665    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:17:49,666         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:17:49,666   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:49,676       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:49,686       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:343:28:
2026-02-12T07:17:49,687   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:49,687     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:49,688         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:49,689   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:49,690       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:344:28:
2026-02-12T07:17:49,690   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:49,691    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:17:49,692         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:17:49,693   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:49,694       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:345:28:
2026-02-12T07:17:49,695   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:49,696    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:17:49,697         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:17:49,698   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:49,699       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:49,700       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:347:28:
2026-02-12T07:17:49,700   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:49,701     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:49,702         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:49,703   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:49,704       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:348:28:
2026-02-12T07:17:49,705   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:49,716    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:17:49,717         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:17:49,718   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:49,718       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:349:28:
2026-02-12T07:17:49,719   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:49,720    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:17:49,726         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:17:49,727   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:49,727       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:49,728       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:360:28:
2026-02-12T07:17:49,729   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:49,730     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:49,731         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:49,731   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:49,732       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:49,733       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:363:28:
2026-02-12T07:17:49,734   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:49,735     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:49,736         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:49,737   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:49,738       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:366:28:
2026-02-12T07:17:49,738   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:49,739    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:17:49,740         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:17:49,741   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:49,741       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:49,742       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:368:28:
2026-02-12T07:17:49,743   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:49,744     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:49,746         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:49,756   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:49,766       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:49,767       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:371:28:
2026-02-12T07:17:49,768   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:49,769     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:49,770         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:49,796   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:49,797       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:49,798       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:406:30:
2026-02-12T07:17:49,799   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:49,801     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:49,802         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:49,803   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:49,805       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:49,808       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:407:30:
2026-02-12T07:17:49,809   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:49,810     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:49,811         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:49,812   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:49,813       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:49,816       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:408:30:
2026-02-12T07:17:49,817   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:49,826     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:49,827         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:49,827   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:49,828       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:49,829       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:409:30:
2026-02-12T07:17:49,830   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:49,831     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:49,832         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:49,836   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:49,846       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:49,847       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:410:30:
2026-02-12T07:17:49,848   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:49,848     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:49,849         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:49,850   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:49,851       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:49,852       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:411:30:
2026-02-12T07:17:49,853   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:49,854     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:49,855         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:49,856   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:49,866       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:49,867       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:412:30:
2026-02-12T07:17:49,869   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:49,870     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:49,871         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:49,872   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:49,872       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:49,873       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:413:30:
2026-02-12T07:17:49,874   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:49,875     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:49,876         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:49,877   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:49,886       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:49,887       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:414:30:
2026-02-12T07:17:49,888   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:49,889     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:49,893         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:49,894   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:49,895       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:49,896       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:415:30:
2026-02-12T07:17:49,897   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:49,897     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:49,898         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:49,899   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:49,899       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:49,906       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:428:28:
2026-02-12T07:17:49,916   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:49,917     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:49,917         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:49,918   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:49,919       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:49,920       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:429:28:
2026-02-12T07:17:49,921   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:49,922     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:49,922         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:49,923   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:49,924       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:49,925       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:430:28:
2026-02-12T07:17:49,926   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:49,927     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:49,927         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:49,928   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:49,929       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:49,930       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:431:28:
2026-02-12T07:17:49,930   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:49,936     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:49,938         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:49,939   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:49,940       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:49,941       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:432:28:
2026-02-12T07:17:49,945   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:49,946     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:49,947         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:49,948   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:49,949       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:49,950       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:433:28:
2026-02-12T07:17:49,951   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:49,952     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:49,956         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:49,957   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:49,958       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:49,959       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:434:28:
2026-02-12T07:17:49,960   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:49,961     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:49,962         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:49,963   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:49,966       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:49,976       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:450:28:
2026-02-12T07:17:49,977   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:49,978     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:49,979         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:49,979   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:49,980       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:49,981       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:451:28:
2026-02-12T07:17:49,983   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:49,985     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:49,986         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:49,987   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:49,988       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:49,989       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:452:28:
2026-02-12T07:17:49,991   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:49,996     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:49,997         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:49,998   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:49,999       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:50,000       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:453:28:
2026-02-12T07:17:50,002   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:50,006     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:50,007         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:50,007   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:50,008       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:50,009       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:454:28:
2026-02-12T07:17:50,016   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:50,017     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:50,017         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:50,018   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:50,019       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:50,020       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:455:28:
2026-02-12T07:17:50,023   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:50,024     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:50,025         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:50,026   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:50,027       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:50,028       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:456:28:
2026-02-12T07:17:50,029   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:50,030     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:50,031         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:50,036   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:50,046       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:50,047       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:457:28:
2026-02-12T07:17:50,048   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:50,049     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:50,049         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:50,050   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:50,051       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:50,052       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:458:28:
2026-02-12T07:17:50,053   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:50,054     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:50,054         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:50,056   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:50,057       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:50,058       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:459:28:
2026-02-12T07:17:50,059   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:50,059     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:50,060         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:50,061   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:50,062       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:50,066       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:460:28:
2026-02-12T07:17:50,076   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:50,077     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:50,078         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:50,079   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:50,080       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:50,081       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:461:28:
2026-02-12T07:17:50,082   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:50,082     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:50,083         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:50,084   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:50,085       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:50,086       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:462:28:
2026-02-12T07:17:50,093   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:50,094     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:50,095         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:50,096   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:50,097       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:50,098       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:463:28:
2026-02-12T07:17:50,099   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:50,100     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:50,101         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:50,101   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:50,102       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:50,103       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:464:28:
2026-02-12T07:17:50,104   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:50,105     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:50,106         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:50,107   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:50,108       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:50,116       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:474:28:
2026-02-12T07:17:50,122   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:50,123     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:50,124         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:50,124   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:50,125       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:50,126       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:475:28:
2026-02-12T07:17:50,127   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:50,128     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:50,129         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:50,130   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:50,131       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:50,132       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:476:28:
2026-02-12T07:17:50,133   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:50,134     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:50,135         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:50,136   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:50,137       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:50,142       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:477:28:
2026-02-12T07:17:50,146   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:50,156     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:50,157         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:50,158   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:50,159       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:50,160       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:478:28:
2026-02-12T07:17:50,160   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:50,161     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:50,162         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:50,163   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:50,167       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:50,168       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:479:28:
2026-02-12T07:17:50,169   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:50,170     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:50,170         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:50,171   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:50,172       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:50,173       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:480:28:
2026-02-12T07:17:50,173   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:50,174     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:50,175         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:50,176   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:50,177       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:50,178       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:481:28:
2026-02-12T07:17:50,179   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:50,180     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:50,185         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:50,186   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:17:50,196       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:17:50,196       inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.cpp:482:28:
2026-02-12T07:17:50,197   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:17:50,198     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:17:50,198         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:17:53,103   [24/86] Building CXX object avogadro/core/CMakeFiles/Core.dir/mutex.cpp.o
2026-02-12T07:18:07,922   [25/86] Building CXX object avogadro/core/CMakeFiles/Core.dir/internalcoordinates.cpp.o
2026-02-12T07:18:12,292   [26/86] Building CXX object avogadro/core/CMakeFiles/Core.dir/mesh.cpp.o
2026-02-12T07:18:14,370   [27/86] Building CXX object avogadro/core/CMakeFiles/Core.dir/neighborperceiver.cpp.o
2026-02-12T07:18:15,871   [28/86] Building CXX object avogadro/core/CMakeFiles/Core.dir/nameatomtyper.cpp.o
2026-02-12T07:18:43,503   [29/86] Building CXX object avogadro/core/CMakeFiles/Core.dir/secondarystructure.cpp.o
2026-02-12T07:18:44,874   [30/86] Building CXX object avogadro/core/CMakeFiles/Core.dir/ringperceiver.cpp.o
2026-02-12T07:18:46,775   [31/86] Building CXX object avogadro/core/CMakeFiles/Core.dir/slatersettools.cpp.o
2026-02-12T07:18:46,776   In file included from /usr/include/c++/12/vector:70,
2026-02-12T07:18:46,777                    from /usr/include/c++/12/functional:62,
2026-02-12T07:18:46,778                    from /usr/include/eigen3/Eigen/Core:85,
2026-02-12T07:18:46,779                    from /usr/include/eigen3/Eigen/Dense:1,
2026-02-12T07:18:46,780                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/vector.h:10,
2026-02-12T07:18:46,781                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/slatersettools.h:11,
2026-02-12T07:18:46,782                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/slatersettools.cpp:6:
2026-02-12T07:18:46,783   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, 3, 1, 0, 3, 1>, const Eigen::Matrix<double, 3, 1, 0, 3, 1> >}; _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’:
2026-02-12T07:18:46,784   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator’ changed in GCC 7.1
2026-02-12T07:18:46,785     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:18:46,787         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:18:46,788   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
2026-02-12T07:18:46,790   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2026-02-12T07:18:46,791   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, 3, 1, 0, 3, 1>, const Eigen::Matrix<double, 3, 1, 0, 3, 1> >}; _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:18:46,793       inlined from ‘std::vector<double> Avogadro::Core::SlaterSetTools::calculateValues(const Avogadro::Vector3&) const’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/slatersettools.cpp:98:24:
2026-02-12T07:18:46,807   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:18:46,816     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:18:46,826         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:18:46,827   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:18:46,829       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:18:46,830       inlined from ‘std::vector<double> Avogadro::Core::SlaterSetTools::calculateValues(const Avogadro::Vector3&) const’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/slatersettools.cpp:99:18:
2026-02-12T07:18:46,832   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:18:46,833     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:18:46,835         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:19:13,758   [32/86] Building CXX object avogadro/core/CMakeFiles/Core.dir/unitcell.cpp.o
2026-02-12T07:19:14,820   [33/86] Building CXX object avogadro/core/CMakeFiles/Core.dir/symbolatomtyper.cpp.o
2026-02-12T07:19:15,181   [34/86] Building CXX object avogadro/core/CMakeFiles/Core.dir/version.cpp.o
2026-02-12T07:19:20,060   [35/86] Building CXX object avogadro/core/CMakeFiles/Core.dir/sharedmutex.cpp.o
2026-02-12T07:19:34,488   [36/86] Building CXX object avogadro/core/CMakeFiles/Core.dir/spacegroups.cpp.o
2026-02-12T07:19:34,488   In file included from /usr/include/c++/12/vector:70,
2026-02-12T07:19:34,489                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:12,
2026-02-12T07:19:34,490                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/spacegroups.h:11,
2026-02-12T07:19:34,491                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/spacegroups.cpp:6:
2026-02-12T07:19:34,492   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’:
2026-02-12T07:19:34,492   /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator’ changed in GCC 7.1
2026-02-12T07:19:34,493     523 |     vector<_Tp, _Alloc>::
2026-02-12T07:19:34,494         |     ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:19:34,495   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Eigen::Matrix<double, 3, 1, 0, 3, 1>&}; _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’:
2026-02-12T07:19:34,497   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator’ changed in GCC 7.1
2026-02-12T07:19:34,498     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:19:34,499         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:19:34,499   In file included from /usr/include/c++/12/vector:64:
2026-02-12T07:19:34,500   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:19:34,501       inlined from ‘void Avogadro::Core::Array<T>::push_back(const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:252:22,
2026-02-12T07:19:34,502       inlined from ‘static Avogadro::Core::Array<Eigen::Matrix<double, 3, 1> > Avogadro::Core::SpaceGroups::getTransforms(short unsigned int, const Avogadro::Vector3&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/spacegroups.cpp:252:18:
2026-02-12T07:19:34,503   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:19:34,504    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:19:34,505         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:19:34,505   In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:19:34,507       inlined from ‘void Avogadro::Core::Array<T>::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:179:19,
2026-02-12T07:19:34,507       inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.h:1186:27,
2026-02-12T07:19:34,508       inlined from ‘void Avogadro::Core::AtomTemplate<Molecule_T>::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/atom.h:304:32,
2026-02-12T07:19:34,509       inlined from ‘static void Avogadro::Core::SpaceGroups::fillUnitCell(Avogadro::Core::Molecule&, short unsigned int, double, bool, bool)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/spacegroups.cpp:301:28:
2026-02-12T07:19:34,510   /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:19:34,511    1032 |           _M_fill_insert(end(), __new_size - size(), __x);
2026-02-12T07:19:34,512         |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:19:34,526   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:19:34,536       inlined from ‘void Avogadro::Core::Array<T>::push_back(const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:252:22,
2026-02-12T07:19:34,537       inlined from ‘static void Avogadro::Core::SpaceGroups::fillUnitCell(Avogadro::Core::Molecule&, short unsigned int, double, bool, bool)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/spacegroups.cpp:326:27:
2026-02-12T07:19:34,538   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:19:34,538    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:19:34,539         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:19:34,540   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:19:34,541       inlined from ‘void Avogadro::Core::Array<T>::push_back(const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:252:22,
2026-02-12T07:19:34,542       inlined from ‘static void Avogadro::Core::SpaceGroups::fillUnitCell(Avogadro::Core::Molecule&, short unsigned int, double, bool, bool)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/spacegroups.cpp:330:27:
2026-02-12T07:19:34,542   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:19:34,543    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:19:34,544         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:19:34,545   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:19:34,546       inlined from ‘void Avogadro::Core::Array<T>::push_back(const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:252:22,
2026-02-12T07:19:34,547       inlined from ‘static void Avogadro::Core::SpaceGroups::fillUnitCell(Avogadro::Core::Molecule&, short unsigned int, double, bool, bool)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/spacegroups.cpp:336:29:
2026-02-12T07:19:34,548   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:19:34,549    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:19:34,550         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:19:34,550   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:19:34,551       inlined from ‘void Avogadro::Core::Array<T>::push_back(const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:252:22,
2026-02-12T07:19:34,552       inlined from ‘static void Avogadro::Core::SpaceGroups::fillUnitCell(Avogadro::Core::Molecule&, short unsigned int, double, bool, bool)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/spacegroups.cpp:341:29:
2026-02-12T07:19:34,553   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:19:34,554    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:19:34,555         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:19:34,556   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:19:34,557       inlined from ‘void Avogadro::Core::Array<T>::push_back(const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:252:22,
2026-02-12T07:19:34,557       inlined from ‘static void Avogadro::Core::SpaceGroups::fillUnitCell(Avogadro::Core::Molecule&, short unsigned int, double, bool, bool)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/spacegroups.cpp:348:25:
2026-02-12T07:19:34,558   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:19:34,566    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:19:34,576         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:19:34,576   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:19:34,577       inlined from ‘void Avogadro::Core::Array<T>::push_back(const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:252:22,
2026-02-12T07:19:34,578       inlined from ‘static void Avogadro::Core::SpaceGroups::fillUnitCell(Avogadro::Core::Molecule&, short unsigned int, double, bool, bool)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/spacegroups.cpp:352:25:
2026-02-12T07:19:34,579   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:19:34,580    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:19:34,581         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:19:34,582   In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:19:34,583       inlined from ‘void Avogadro::Core::Array<T>::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:179:19,
2026-02-12T07:19:34,583       inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.h:1186:27,
2026-02-12T07:19:34,584       inlined from ‘void Avogadro::Core::AtomTemplate<Molecule_T>::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/atom.h:304:32,
2026-02-12T07:19:34,585       inlined from ‘static void Avogadro::Core::SpaceGroups::fillUnitCell(Avogadro::Core::Molecule&, short unsigned int, double, bool, bool)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/spacegroups.cpp:376:28:
2026-02-12T07:19:34,586   /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:19:34,587    1032 |           _M_fill_insert(end(), __new_size - size(), __x);
2026-02-12T07:19:34,588         |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:19:38,991   [37/86] Building CXX object avogadro/core/CMakeFiles/Core.dir/variantmap.cpp.o
2026-02-12T07:19:51,826   [38/86] Building CXX object avogadro/calc/CMakeFiles/Calc.dir/chargemodel.cpp.o
2026-02-12T07:20:04,460   [39/86] Building CXX object avogadro/calc/CMakeFiles/Calc.dir/defaultmodel.cpp.o
2026-02-12T07:20:14,135   [40/86] Building CXX object avogadro/calc/CMakeFiles/Calc.dir/chargemanager.cpp.o
2026-02-12T07:20:33,923   [41/86] Building CXX object avogadro/calc/CMakeFiles/Calc.dir/energycalculator.cpp.o
2026-02-12T07:20:33,923   In file included from /usr/include/c++/12/vector:70,
2026-02-12T07:20:33,924                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:12,
2026-02-12T07:20:33,924                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.h:13,
2026-02-12T07:20:33,925                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/calc/energycalculator.h:12,
2026-02-12T07:20:33,926                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/calc/energycalculator.cpp:6:
2026-02-12T07:20:33,927   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Avogadro::Core::Constraint&}; _Tp = Avogadro::Core::Constraint; _Alloc = std::allocator<Avogadro::Core::Constraint>]’:
2026-02-12T07:20:33,927   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<Avogadro::Core::Constraint>::iterator’ changed in GCC 7.1
2026-02-12T07:20:33,928     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:20:33,929         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:20:33,930   In file included from /usr/include/c++/12/vector:64:
2026-02-12T07:20:33,931   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Avogadro::Core::Constraint; _Alloc = std::allocator<Avogadro::Core::Constraint>]’,
2026-02-12T07:20:33,932       inlined from ‘std::vector<Avogadro::Core::Constraint> Avogadro::Calc::EnergyCalculator::constraints() const’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/calc/energycalculator.cpp:81:29:
2026-02-12T07:20:33,933   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Avogadro::Core::Constraint*, std::vector<Avogadro::Core::Constraint> >’ changed in GCC 7.1
2026-02-12T07:20:33,934    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:20:33,935         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:20:33,936   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Avogadro::Core::Constraint; _Alloc = std::allocator<Avogadro::Core::Constraint>]’,
2026-02-12T07:20:33,937       inlined from ‘std::vector<Avogadro::Core::Constraint> Avogadro::Calc::EnergyCalculator::constraints() const’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/calc/energycalculator.cpp:84:29:
2026-02-12T07:20:33,938   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Avogadro::Core::Constraint*, std::vector<Avogadro::Core::Constraint> >’ changed in GCC 7.1
2026-02-12T07:20:33,939    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:20:33,940         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:20:33,941   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Avogadro::Core::Constraint; _Alloc = std::allocator<Avogadro::Core::Constraint>]’,
2026-02-12T07:20:33,942       inlined from ‘std::vector<Avogadro::Core::Constraint> Avogadro::Calc::EnergyCalculator::constraints() const’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/calc/energycalculator.cpp:87:29:
2026-02-12T07:20:33,943   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Avogadro::Core::Constraint*, std::vector<Avogadro::Core::Constraint> >’ changed in GCC 7.1
2026-02-12T07:20:33,944    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:20:33,945         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:20:33,946   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Avogadro::Core::Constraint; _Alloc = std::allocator<Avogadro::Core::Constraint>]’,
2026-02-12T07:20:33,946       inlined from ‘std::vector<Avogadro::Core::Constraint> Avogadro::Calc::EnergyCalculator::constraints() const’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/calc/energycalculator.cpp:90:29:
2026-02-12T07:20:33,947   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Avogadro::Core::Constraint*, std::vector<Avogadro::Core::Constraint> >’ changed in GCC 7.1
2026-02-12T07:20:33,956    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:20:33,966         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:20:33,966   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Avogadro::Core::Constraint; _Alloc = std::allocator<Avogadro::Core::Constraint>]’,
2026-02-12T07:20:33,967       inlined from ‘void Avogadro::Calc::EnergyCalculator::setConstraints(const std::vector<Avogadro::Core::Constraint>&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/calc/energycalculator.cpp:54:40:
2026-02-12T07:20:33,968   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Avogadro::Core::Constraint*, std::vector<Avogadro::Core::Constraint> >’ changed in GCC 7.1
2026-02-12T07:20:33,969    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:20:33,969         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:20:33,970   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Avogadro::Core::Constraint; _Alloc = std::allocator<Avogadro::Core::Constraint>]’,
2026-02-12T07:20:33,971       inlined from ‘void Avogadro::Calc::EnergyCalculator::setConstraints(const std::vector<Avogadro::Core::Constraint>&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/calc/energycalculator.cpp:57:37:
2026-02-12T07:20:33,972   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Avogadro::Core::Constraint*, std::vector<Avogadro::Core::Constraint> >’ changed in GCC 7.1
2026-02-12T07:20:33,973    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:20:33,974         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:20:33,975   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Avogadro::Core::Constraint; _Alloc = std::allocator<Avogadro::Core::Constraint>]’,
2026-02-12T07:20:33,976       inlined from ‘void Avogadro::Calc::EnergyCalculator::setConstraints(const std::vector<Avogadro::Core::Constraint>&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/calc/energycalculator.cpp:60:39:
2026-02-12T07:20:33,976   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Avogadro::Core::Constraint*, std::vector<Avogadro::Core::Constraint> >’ changed in GCC 7.1
2026-02-12T07:20:33,977    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:20:33,978         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:20:33,979   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Avogadro::Core::Constraint; _Alloc = std::allocator<Avogadro::Core::Constraint>]’,
2026-02-12T07:20:33,980       inlined from ‘void Avogadro::Calc::EnergyCalculator::setConstraints(const std::vector<Avogadro::Core::Constraint>&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/calc/energycalculator.cpp:63:42:
2026-02-12T07:20:33,981   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Avogadro::Core::Constraint*, std::vector<Avogadro::Core::Constraint> >’ changed in GCC 7.1
2026-02-12T07:20:33,983    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:20:33,996         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:20:35,215   [42/86] Building CXX object avogadro/core/CMakeFiles/Core.dir/slaterset.cpp.o
2026-02-12T07:20:42,733   [43/86] Building CXX object avogadro/calc/CMakeFiles/Calc.dir/energymanager.cpp.o
2026-02-12T07:20:55,113   [44/86] Building CXX object avogadro/calc/CMakeFiles/Calc.dir/lennardjones.cpp.o
2026-02-12T07:20:57,410   [45/86] Building CXX object avogadro/core/CMakeFiles/Core.dir/molecule.cpp.o
2026-02-12T07:20:57,411   In file included from /usr/include/c++/12/vector:70,
2026-02-12T07:20:57,412                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:12,
2026-02-12T07:20:57,413                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.h:13,
2026-02-12T07:20:57,413                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.cpp:6:
2026-02-12T07:20:57,414   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Avogadro::Core::Constraint&}; _Tp = Avogadro::Core::Constraint; _Alloc = std::allocator<Avogadro::Core::Constraint>]’:
2026-02-12T07:20:57,415   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<Avogadro::Core::Constraint>::iterator’ changed in GCC 7.1
2026-02-12T07:20:57,416     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:20:57,417         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:20:57,418   In file included from /usr/include/c++/12/vector:64:
2026-02-12T07:20:57,420   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Avogadro::Core::Constraint; _Alloc = std::allocator<Avogadro::Core::Constraint>]’,
2026-02-12T07:20:57,421       inlined from ‘void Avogadro::Core::Molecule::addConstraint(Avogadro::Real, Avogadro::Index, Avogadro::Index, Avogadro::Index, Avogadro::Index)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.cpp:367:26:
2026-02-12T07:20:57,422   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Avogadro::Core::Constraint*, std::vector<Avogadro::Core::Constraint> >’ changed in GCC 7.1
2026-02-12T07:20:57,423    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:20:57,424         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:20:57,425   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Eigen::Matrix<double, 3, 1, 0, 3, 1>&}; _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’:
2026-02-12T07:20:57,426   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator’ changed in GCC 7.1
2026-02-12T07:20:57,427     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:20:57,428         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:20:57,429   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:20:57,430       inlined from ‘void Avogadro::Core::Array<T>::push_back(const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:252:22,
2026-02-12T07:20:57,431       inlined from ‘Avogadro::Core::Molecule::AtomType Avogadro::Core::Molecule::addAtom(unsigned char, Avogadro::Vector3)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.cpp:608:28:
2026-02-12T07:20:57,432   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:20:57,436    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:20:57,446         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:20:57,456   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’:
2026-02-12T07:20:57,457   /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2026-02-12T07:20:57,458     523 |     vector<_Tp, _Alloc>::
2026-02-12T07:20:57,458         |     ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:20:57,459   In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:20:57,460       inlined from ‘void Avogadro::Core::Array<T>::resize(const std::size_t&, const ValueType&) [with T = double]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:179:19,
2026-02-12T07:20:57,462       inlined from ‘bool Avogadro::Core::Molecule::setTimeStep(double, int)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.cpp:1399:23:
2026-02-12T07:20:57,466   /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:20:57,467    1032 |           _M_fill_insert(end(), __new_size - size(), __x);
2026-02-12T07:20:57,468         |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:20:57,469   In file included from /usr/include/c++/12/set:60,
2026-02-12T07:20:57,470                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/graph.h:13,
2026-02-12T07:20:57,471                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.h:17:
2026-02-12T07:20:57,472   /usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const unsigned char&>, std::tuple<>}; _Key = unsigned char; _Val = std::pair<const unsigned char, double>; _KeyOfValue = std::_Select1st<std::pair<const unsigned char, double> >; _Compare = std::less<unsigned char>; _Alloc = std::allocator<std::pair<const unsigned char, double> >]’:
2026-02-12T07:20:57,473   /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<unsigned char, std::pair<const unsigned char, double>, std::_Select1st<std::pair<const unsigned char, double> >, std::less<unsigned char>, std::allocator<std::pair<const unsigned char, double> > >::const_iterator’ changed in GCC 7.1
2026-02-12T07:20:57,474    2457 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
2026-02-12T07:20:57,475         |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:20:57,486   In file included from /usr/include/c++/12/map:61,
2026-02-12T07:20:57,496                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/variantmap.h:13,
2026-02-12T07:20:57,506                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.h:19:
2026-02-12T07:20:57,507   In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = unsigned char; _Tp = double; _Compare = std::less<unsigned char>; _Alloc = std::allocator<std::pair<const unsigned char, double> >]’,
2026-02-12T07:20:57,508       inlined from ‘std::map<unsigned char, unsigned int> Avogadro::Core::Molecule::composition() const’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.cpp:1610:34:
2026-02-12T07:20:57,509   /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<unsigned char, std::pair<const unsigned char, double>, std::_Select1st<std::pair<const unsigned char, double> >, std::less<unsigned char>, std::allocator<std::pair<const unsigned char, double> > >::const_iterator’ changed in GCC 7.1
2026-02-12T07:20:57,510     511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
2026-02-12T07:20:57,511         |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:20:57,512     512 |                                             std::tuple<const key_type&>(__k),
2026-02-12T07:20:57,513         |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:20:57,514     513 |                                             std::tuple<>());
2026-02-12T07:20:57,515         |                                             ~~~~~~~~~~~~~~~
2026-02-12T07:20:57,516   In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = unsigned char; _Tp = double; _Compare = std::less<unsigned char>; _Alloc = std::allocator<std::pair<const unsigned char, double> >]’,
2026-02-12T07:20:57,517       inlined from ‘std::map<unsigned char, unsigned int> Avogadro::Core::Molecule::composition() const’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.cpp:1615:34:
2026-02-12T07:20:57,518   /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<unsigned char, std::pair<const unsigned char, double>, std::_Select1st<std::pair<const unsigned char, double> >, std::less<unsigned char>, std::allocator<std::pair<const unsigned char, double> > >::const_iterator’ changed in GCC 7.1
2026-02-12T07:20:57,519     511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
2026-02-12T07:20:57,520         |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:20:57,526     512 |                                             std::tuple<const key_type&>(__k),
2026-02-12T07:20:57,536         |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:20:57,546     513 |                                             std::tuple<>());
2026-02-12T07:20:57,547         |                                             ~~~~~~~~~~~~~~~
2026-02-12T07:21:03,550   [46/86] Building CXX object avogadro/io/CMakeFiles/IO.dir/cmsgpackformat.cpp.o
2026-02-12T07:21:12,282   [47/86] Building CXX object avogadro/io/CMakeFiles/IO.dir/fileformat.cpp.o
2026-02-12T07:21:32,893   [48/86] Building CXX object avogadro/io/CMakeFiles/IO.dir/fileformatmanager.cpp.o
2026-02-12T07:21:35,268   [49/86] Building CXX object avogadro/calc/CMakeFiles/Calc.dir/uff.cpp.o
2026-02-12T07:21:35,269   In file included from /usr/include/c++/12/vector:70,
2026-02-12T07:21:35,270                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:12,
2026-02-12T07:21:35,271                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.h:13,
2026-02-12T07:21:35,272                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/calc/energycalculator.h:12,
2026-02-12T07:21:35,273                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/calc/uff.h:10,
2026-02-12T07:21:35,274                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/calc/uff.cpp:6:
2026-02-12T07:21:35,275   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Avogadro::Calc::UFFBond&}; _Tp = Avogadro::Calc::UFFBond; _Alloc = std::allocator<Avogadro::Calc::UFFBond>]’:
2026-02-12T07:21:35,276   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<Avogadro::Calc::UFFBond>::iterator’ changed in GCC 7.1
2026-02-12T07:21:35,277     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:21:35,278         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:21:35,279   In file included from /usr/include/c++/12/vector:64:
2026-02-12T07:21:35,280   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Avogadro::Calc::UFFBond; _Alloc = std::allocator<Avogadro::Calc::UFFBond>]’,
2026-02-12T07:21:35,281       inlined from ‘void Avogadro::Calc::UFFPrivate::setBonds()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/calc/uff.cpp:311:24:
2026-02-12T07:21:35,282   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Avogadro::Calc::UFFBond*, std::vector<Avogadro::Calc::UFFBond> >’ changed in GCC 7.1
2026-02-12T07:21:35,286    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:21:35,296         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:21:35,306   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Avogadro::Calc::UFFAngle&}; _Tp = Avogadro::Calc::UFFAngle; _Alloc = std::allocator<Avogadro::Calc::UFFAngle>]’:
2026-02-12T07:21:35,307   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<Avogadro::Calc::UFFAngle>::iterator’ changed in GCC 7.1
2026-02-12T07:21:35,308     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:21:35,309         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:21:35,310   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Avogadro::Calc::UFFAngle; _Alloc = std::allocator<Avogadro::Calc::UFFAngle>]’,
2026-02-12T07:21:35,311       inlined from ‘void Avogadro::Calc::UFFPrivate::setAngles()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/calc/uff.cpp:397:25:
2026-02-12T07:21:35,312   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Avogadro::Calc::UFFAngle*, std::vector<Avogadro::Calc::UFFAngle> >’ changed in GCC 7.1
2026-02-12T07:21:35,313    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:21:35,314         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:21:35,315   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Avogadro::Calc::UFFOOP&}; _Tp = Avogadro::Calc::UFFOOP; _Alloc = std::allocator<Avogadro::Calc::UFFOOP>]’:
2026-02-12T07:21:35,316   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<Avogadro::Calc::UFFOOP>::iterator’ changed in GCC 7.1
2026-02-12T07:21:35,346     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:21:35,347         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:21:35,348   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Avogadro::Calc::UFFOOP; _Alloc = std::allocator<Avogadro::Calc::UFFOOP>]’,
2026-02-12T07:21:35,350       inlined from ‘void Avogadro::Calc::UFFPrivate::setOOPs()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/calc/uff.cpp:476:23:
2026-02-12T07:21:35,376   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Avogadro::Calc::UFFOOP*, std::vector<Avogadro::Calc::UFFOOP> >’ changed in GCC 7.1
2026-02-12T07:21:35,396    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:21:35,406         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:21:35,416   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Avogadro::Calc::UFFTorsion&}; _Tp = Avogadro::Calc::UFFTorsion; _Alloc = std::allocator<Avogadro::Calc::UFFTorsion>]’:
2026-02-12T07:21:35,426   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<Avogadro::Calc::UFFTorsion>::iterator’ changed in GCC 7.1
2026-02-12T07:21:35,436     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:21:35,446         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:21:35,447   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Avogadro::Calc::UFFTorsion; _Alloc = std::allocator<Avogadro::Calc::UFFTorsion>]’,
2026-02-12T07:21:35,448       inlined from ‘void Avogadro::Calc::UFFPrivate::setTorsions()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/calc/uff.cpp:593:27:
2026-02-12T07:21:35,450   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Avogadro::Calc::UFFTorsion*, std::vector<Avogadro::Calc::UFFTorsion> >’ changed in GCC 7.1
2026-02-12T07:21:35,451    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:21:35,456         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:21:35,457   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Avogadro::Calc::UFFVdW&}; _Tp = Avogadro::Calc::UFFVdW; _Alloc = std::allocator<Avogadro::Calc::UFFVdW>]’:
2026-02-12T07:21:35,458   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<Avogadro::Calc::UFFVdW>::iterator’ changed in GCC 7.1
2026-02-12T07:21:35,466     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:21:35,476         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:21:35,477   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Avogadro::Calc::UFFVdW; _Alloc = std::allocator<Avogadro::Calc::UFFVdW>]’,
2026-02-12T07:21:35,478       inlined from ‘void Avogadro::Calc::UFFPrivate::setVdWs()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/calc/uff.cpp:630:27:
2026-02-12T07:21:35,479   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Avogadro::Calc::UFFVdW*, std::vector<Avogadro::Calc::UFFVdW> >’ changed in GCC 7.1
2026-02-12T07:21:35,480    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:21:35,481         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:21:38,327   [50/86] Building CXX object avogadro/io/CMakeFiles/IO.dir/cmlformat.cpp.o
2026-02-12T07:21:38,328   In file included from /usr/include/c++/12/vector:70,
2026-02-12T07:21:38,329                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/fileformat.h:15,
2026-02-12T07:21:38,330                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/cmlformat.h:9,
2026-02-12T07:21:38,331                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/cmlformat.cpp:6:
2026-02-12T07:21:38,332   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 2, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 2, 1> >]’:
2026-02-12T07:21:38,333   /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector<Eigen::Matrix<double, 2, 1>, std::allocator<Eigen::Matrix<double, 2, 1> > >::iterator’ changed in GCC 7.1
2026-02-12T07:21:38,334     523 |     vector<_Tp, _Alloc>::
2026-02-12T07:21:38,335         |     ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:21:38,336   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’:
2026-02-12T07:21:38,337   /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator’ changed in GCC 7.1
2026-02-12T07:21:38,338   In file included from /usr/include/c++/12/vector:64:
2026-02-12T07:21:38,338   In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:21:38,339       inlined from ‘void Avogadro::Core::Array<T>::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:179:19,
2026-02-12T07:21:38,340       inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.h:1186:27,
2026-02-12T07:21:38,341       inlined from ‘void Avogadro::Core::AtomTemplate<Molecule_T>::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/atom.h:304:32,
2026-02-12T07:21:38,342       inlined from ‘bool Avogadro::Io::{anonymous}::CmlFormatPrivate::atoms()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/cmlformat.cpp:210:33:
2026-02-12T07:21:38,343   /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:21:38,344    1032 |           _M_fill_insert(end(), __new_size - size(), __x);
2026-02-12T07:21:38,345         |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:21:38,346   In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:21:38,347       inlined from ‘void Avogadro::Core::Array<T>::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:179:19,
2026-02-12T07:21:38,348       inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.h:1186:27,
2026-02-12T07:21:38,349       inlined from ‘void Avogadro::Core::AtomTemplate<Molecule_T>::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/atom.h:304:32,
2026-02-12T07:21:38,356       inlined from ‘bool Avogadro::Io::{anonymous}::CmlFormatPrivate::atoms()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/cmlformat.cpp:234:31:
2026-02-12T07:21:38,366   /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:21:38,367    1032 |           _M_fill_insert(end(), __new_size - size(), __x);
2026-02-12T07:21:38,368         |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:21:38,369   In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 2, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 2, 1> >]’,
2026-02-12T07:21:38,370       inlined from ‘void Avogadro::Core::Array<T>::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix<double, 2, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:179:19,
2026-02-12T07:21:38,371       inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition2d(Avogadro::Index, const Avogadro::Vector2&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.h:1161:27,
2026-02-12T07:21:38,373       inlined from ‘void Avogadro::Core::AtomTemplate<Molecule_T>::setPosition2d(const Avogadro::Vector2&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/atom.h:290:32,
2026-02-12T07:21:38,374       inlined from ‘bool Avogadro::Io::{anonymous}::CmlFormatPrivate::atoms()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/cmlformat.cpp:253:33:
2026-02-12T07:21:38,375   /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 2, 1>*, std::vector<Eigen::Matrix<double, 2, 1>, std::allocator<Eigen::Matrix<double, 2, 1> > > >’ changed in GCC 7.1
2026-02-12T07:21:38,376    1032 |           _M_fill_insert(end(), __new_size - size(), __x);
2026-02-12T07:21:38,377         |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:21:46,188   [51/86] Building CXX object avogadro/io/CMakeFiles/IO.dir/dcdformat.cpp.o
2026-02-12T07:21:46,189   In file included from /usr/include/c++/12/vector:70,
2026-02-12T07:21:46,190                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/fileformat.h:15,
2026-02-12T07:21:46,190                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/dcdformat.h:9,
2026-02-12T07:21:46,191                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/dcdformat.cpp:6:
2026-02-12T07:21:46,192   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’:
2026-02-12T07:21:46,193   /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator’ changed in GCC 7.1
2026-02-12T07:21:46,194     523 |     vector<_Tp, _Alloc>::
2026-02-12T07:21:46,195         |     ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:21:46,196   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Eigen::Matrix<double, 3, 1, 0, 3, 1>&}; _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’:
2026-02-12T07:21:46,197   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator’ changed in GCC 7.1
2026-02-12T07:21:46,199     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:21:46,200         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:21:46,201   In file included from /usr/include/c++/12/vector:64:
2026-02-12T07:21:46,202   In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:21:46,203       inlined from ‘void Avogadro::Core::Array<T>::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:179:19,
2026-02-12T07:21:46,204       inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.h:1186:27,
2026-02-12T07:21:46,205       inlined from ‘void Avogadro::Core::AtomTemplate<Molecule_T>::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/atom.h:304:32,
2026-02-12T07:21:46,206       inlined from ‘virtual bool Avogadro::Io::DcdFormat::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/dcdformat.cpp:309:26:
2026-02-12T07:21:46,207   /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:21:46,208    1032 |           _M_fill_insert(end(), __new_size - size(), __x);
2026-02-12T07:21:46,216         |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:21:46,226   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:21:46,230       inlined from ‘void Avogadro::Core::Array<T>::push_back(const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:252:22,
2026-02-12T07:21:46,231       inlined from ‘virtual bool Avogadro::Io::DcdFormat::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/dcdformat.cpp:385:26:
2026-02-12T07:21:46,232   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:21:46,233    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:21:46,234         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:22:22,240   [52/86] Building CXX object avogadro/io/CMakeFiles/IO.dir/gromacsformat.cpp.o
2026-02-12T07:22:22,241   In file included from /usr/include/c++/12/vector:70,
2026-02-12T07:22:22,242                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/fileformat.h:15,
2026-02-12T07:22:22,243                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/gromacsformat.h:10,
2026-02-12T07:22:22,244                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/gromacsformat.cpp:6:
2026-02-12T07:22:22,245   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’:
2026-02-12T07:22:22,246   /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator’ changed in GCC 7.1
2026-02-12T07:22:22,246     523 |     vector<_Tp, _Alloc>::
2026-02-12T07:22:22,248         |     ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:22:22,248   In file included from /usr/include/c++/12/vector:64:
2026-02-12T07:22:22,249   In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:22:22,250       inlined from ‘void Avogadro::Core::Array<T>::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:179:19,
2026-02-12T07:22:22,251       inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.h:1186:27,
2026-02-12T07:22:22,252       inlined from ‘void Avogadro::Core::AtomTemplate<Molecule_T>::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/atom.h:304:32,
2026-02-12T07:22:22,253       inlined from ‘virtual bool Avogadro::Io::GromacsFormat::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/gromacsformat.cpp:171:23:
2026-02-12T07:22:22,254   /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:22:22,255    1032 |           _M_fill_insert(end(), __new_size - size(), __x);
2026-02-12T07:22:22,255         |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:22:30,242   [53/86] Building CXX object avogadro/io/CMakeFiles/IO.dir/sdfformat.cpp.o
2026-02-12T07:22:38,758   [54/86] Building CXX object avogadro/io/CMakeFiles/IO.dir/pdbformat.cpp.o
2026-02-12T07:22:38,758   In file included from /usr/include/c++/12/vector:70,
2026-02-12T07:22:38,759                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/fileformat.h:15,
2026-02-12T07:22:38,760                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/pdbformat.h:9,
2026-02-12T07:22:38,761                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/pdbformat.cpp:6:
2026-02-12T07:22:38,762   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’:
2026-02-12T07:22:38,763   /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator’ changed in GCC 7.1
2026-02-12T07:22:38,764     523 |     vector<_Tp, _Alloc>::
2026-02-12T07:22:38,765         |     ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:22:38,766   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Eigen::Matrix<double, 3, 1, 0, 3, 1>&}; _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’:
2026-02-12T07:22:38,767   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator’ changed in GCC 7.1
2026-02-12T07:22:38,768     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:22:38,768         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:22:38,769   In file included from /usr/include/c++/12/vector:64:
2026-02-12T07:22:38,770   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:22:38,771       inlined from ‘void Avogadro::Core::Array<T>::push_back(const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:252:22,
2026-02-12T07:22:38,772       inlined from ‘virtual bool Avogadro::Io::PdbFormat::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/pdbformat.cpp:195:35:
2026-02-12T07:22:38,773   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:22:38,774    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:22:38,775         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:22:38,775   In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:22:38,776       inlined from ‘void Avogadro::Core::Array<T>::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:179:19,
2026-02-12T07:22:38,777       inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.h:1186:27,
2026-02-12T07:22:38,778       inlined from ‘void Avogadro::Core::AtomTemplate<Molecule_T>::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/atom.h:304:32,
2026-02-12T07:22:38,786       inlined from ‘virtual bool Avogadro::Io::PdbFormat::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/pdbformat.cpp:198:30:
2026-02-12T07:22:38,796   /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:22:38,797    1032 |           _M_fill_insert(end(), __new_size - size(), __x);
2026-02-12T07:22:38,797         |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:22:38,798   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:22:38,800       inlined from ‘void Avogadro::Core::Array<T>::push_back(const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:252:22,
2026-02-12T07:22:38,801       inlined from ‘virtual bool Avogadro::Io::PdbFormat::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/pdbformat.cpp:204:28:
2026-02-12T07:22:38,801   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:22:38,802    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:22:38,803         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:22:40,656   [55/86] Building CXX object avogadro/io/CMakeFiles/IO.dir/lammpsformat.cpp.o
2026-02-12T07:22:40,658   In file included from /usr/include/c++/12/vector:70,
2026-02-12T07:22:40,659                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/fileformat.h:15,
2026-02-12T07:22:40,660                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/lammpsformat.h:9,
2026-02-12T07:22:40,661                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/lammpsformat.cpp:6:
2026-02-12T07:22:40,662   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’:
2026-02-12T07:22:40,663   /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator’ changed in GCC 7.1
2026-02-12T07:22:40,664     523 |     vector<_Tp, _Alloc>::
2026-02-12T07:22:40,664         |     ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:22:40,666   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Eigen::Matrix<double, 3, 1, 0, 3, 1>&}; _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’:
2026-02-12T07:22:40,667   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator’ changed in GCC 7.1
2026-02-12T07:22:40,668     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:22:40,669         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:22:40,670   In file included from /usr/include/c++/12/vector:64:
2026-02-12T07:22:40,671   In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:22:40,672       inlined from ‘void Avogadro::Core::Array<T>::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:179:19,
2026-02-12T07:22:40,673       inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.h:1186:27,
2026-02-12T07:22:40,686       inlined from ‘void Avogadro::Core::AtomTemplate<Molecule_T>::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/atom.h:304:32,
2026-02-12T07:22:40,691       inlined from ‘virtual bool Avogadro::Io::LammpsTrajectoryFormat::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/lammpsformat.cpp:211:26:
2026-02-12T07:22:40,696   /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:22:40,706    1032 |           _M_fill_insert(end(), __new_size - size(), __x);
2026-02-12T07:22:40,707         |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:22:40,707   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:22:40,708       inlined from ‘void Avogadro::Core::Array<T>::push_back(const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:252:22,
2026-02-12T07:22:40,709       inlined from ‘virtual bool Avogadro::Io::LammpsTrajectoryFormat::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/lammpsformat.cpp:397:26:
2026-02-12T07:22:40,710   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:22:40,711    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:22:40,712         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:22:40,839   [56/86] Building CXX object avogadro/io/CMakeFiles/IO.dir/mdlformat.cpp.o
2026-02-12T07:22:40,840   In file included from /usr/include/c++/12/vector:70,
2026-02-12T07:22:40,841                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/fileformat.h:15,
2026-02-12T07:22:40,842                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/mdlformat.h:9,
2026-02-12T07:22:40,842                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/mdlformat.cpp:6:
2026-02-12T07:22:40,843   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’:
2026-02-12T07:22:40,844   /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator’ changed in GCC 7.1
2026-02-12T07:22:40,844     523 |     vector<_Tp, _Alloc>::
2026-02-12T07:22:40,845         |     ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:22:40,846   In file included from /usr/include/c++/12/vector:64:
2026-02-12T07:22:40,847   In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:22:40,848       inlined from ‘void Avogadro::Core::Array<T>::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:179:19,
2026-02-12T07:22:40,848       inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.h:1186:27:
2026-02-12T07:22:40,849   /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:22:40,850    1032 |           _M_fill_insert(end(), __new_size - size(), __x);
2026-02-12T07:22:40,851         |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:22:40,866   In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:22:40,867       inlined from ‘void Avogadro::Core::Array<T>::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:179:19,
2026-02-12T07:22:40,868       inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.h:1186:27,
2026-02-12T07:22:40,869       inlined from ‘void Avogadro::Core::AtomTemplate<Molecule_T>::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/atom.h:304:32,
2026-02-12T07:22:40,870       inlined from ‘bool Avogadro::Io::MdlFormat::readV3000(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/mdlformat.cpp:681:26:
2026-02-12T07:22:40,870   /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:22:40,871    1032 |           _M_fill_insert(end(), __new_size - size(), __x);
2026-02-12T07:22:40,872         |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:22:40,873   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Eigen::Matrix<double, 3, 1, 0, 3, 1>&}; _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’:
2026-02-12T07:22:40,874   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator’ changed in GCC 7.1
2026-02-12T07:22:40,875     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:22:40,876         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:22:40,877   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:22:40,878       inlined from ‘void Avogadro::Core::Array<T>::push_back(const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:252:22:
2026-02-12T07:22:40,880   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:22:40,882    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:22:40,884         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:23:22,211   [57/86] Building CXX object avogadro/io/CMakeFiles/IO.dir/trrformat.cpp.o
2026-02-12T07:23:22,211   In file included from /usr/include/c++/12/vector:70,
2026-02-12T07:23:22,212                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/fileformat.h:15,
2026-02-12T07:23:22,213                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/trrformat.h:9,
2026-02-12T07:23:22,214                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/trrformat.cpp:6:
2026-02-12T07:23:22,215   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’:
2026-02-12T07:23:22,217   /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator’ changed in GCC 7.1
2026-02-12T07:23:22,218     523 |     vector<_Tp, _Alloc>::
2026-02-12T07:23:22,219         |     ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:23:22,220   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Eigen::Matrix<double, 3, 1, 0, 3, 1>&}; _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’:
2026-02-12T07:23:22,221   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator’ changed in GCC 7.1
2026-02-12T07:23:22,221     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:23:22,223         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:23:22,224   In file included from /usr/include/c++/12/vector:64:
2026-02-12T07:23:22,225   In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:23:22,226       inlined from ‘void Avogadro::Core::Array<T>::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:179:19,
2026-02-12T07:23:22,227       inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.h:1186:27,
2026-02-12T07:23:22,228       inlined from ‘void Avogadro::Core::AtomTemplate<Molecule_T>::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/atom.h:304:32,
2026-02-12T07:23:22,229       inlined from ‘virtual bool Avogadro::Io::TrrFormat::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/trrformat.cpp:241:32:
2026-02-12T07:23:22,230   /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:23:22,231    1032 |           _M_fill_insert(end(), __new_size - size(), __x);
2026-02-12T07:23:22,231         |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:23:22,232   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:23:22,234       inlined from ‘void Avogadro::Core::Array<T>::push_back(const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:252:22,
2026-02-12T07:23:22,237       inlined from ‘virtual bool Avogadro::Io::TrrFormat::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/trrformat.cpp:404:32:
2026-02-12T07:23:22,246   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:23:22,247    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:23:22,248         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:23:44,268   [58/86] Building CXX object avogadro/io/CMakeFiles/IO.dir/vaspformat.cpp.o
2026-02-12T07:23:44,268   In file included from /usr/include/c++/12/vector:70,
2026-02-12T07:23:44,269                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/fileformat.h:15,
2026-02-12T07:23:44,270                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/vaspformat.h:9,
2026-02-12T07:23:44,272                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/vaspformat.cpp:6:
2026-02-12T07:23:44,273   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double&, double&, double&}; _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’:
2026-02-12T07:23:44,274   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator’ changed in GCC 7.1
2026-02-12T07:23:44,275     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:23:44,276         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:23:44,277   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’:
2026-02-12T07:23:44,278   /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator’ changed in GCC 7.1
2026-02-12T07:23:44,279     523 |     vector<_Tp, _Alloc>::
2026-02-12T07:23:44,280         |     ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:23:44,280   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2026-02-12T07:23:44,281   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2026-02-12T07:23:44,282     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:23:44,282         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:23:44,283   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double&}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:23:44,284       inlined from ‘std::optional<std::vector<T> > Avogadro::Core::lexicalCast(Iterator, Iterator) [with T = double; Iterator = __gnu_cxx::__normal_iterator<std::__cxx11::basic_string<char>*, std::vector<std::__cxx11::basic_string<char> > >]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/utilities.h:152:26:
2026-02-12T07:23:44,285   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:23:44,286     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:23:44,287         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:23:44,287   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Eigen::Matrix<double, 3, 1, 0, 3, 1>&}; _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’:
2026-02-12T07:23:44,289   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator’ changed in GCC 7.1
2026-02-12T07:23:44,289     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:23:44,290         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:23:44,291   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double&, double&, double&}; _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:23:44,292       inlined from ‘virtual bool Avogadro::Io::PoscarFormat::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/vaspformat.cpp:196:27:
2026-02-12T07:23:44,293   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:23:44,294     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:23:44,295         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:23:44,296   In file included from /usr/include/c++/12/vector:64:
2026-02-12T07:23:44,297   In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:23:44,298       inlined from ‘void Avogadro::Core::Array<T>::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:179:19,
2026-02-12T07:23:44,299       inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.h:1186:27,
2026-02-12T07:23:44,312       inlined from ‘void Avogadro::Core::AtomTemplate<Molecule_T>::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/atom.h:304:32,
2026-02-12T07:23:44,313       inlined from ‘virtual bool Avogadro::Io::PoscarFormat::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/vaspformat.cpp:236:28:
2026-02-12T07:23:44,314   /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:23:44,315    1032 |           _M_fill_insert(end(), __new_size - size(), __x);
2026-02-12T07:23:44,316         |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:23:44,317   In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:23:44,318       inlined from ‘void Avogadro::Core::Array<T>::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:179:19,
2026-02-12T07:23:44,319       inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.h:1186:27,
2026-02-12T07:23:44,320       inlined from ‘void Avogadro::Core::AtomTemplate<Molecule_T>::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/atom.h:304:32,
2026-02-12T07:23:44,322       inlined from ‘virtual bool Avogadro::Io::OutcarFormat::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/vaspformat.cpp:533:34:
2026-02-12T07:23:44,323   /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:23:44,324    1032 |           _M_fill_insert(end(), __new_size - size(), __x);
2026-02-12T07:23:44,326         |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:23:44,327   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:23:44,329       inlined from ‘void Avogadro::Core::Array<T>::push_back(const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:252:22,
2026-02-12T07:23:44,330       inlined from ‘virtual bool Avogadro::Io::OutcarFormat::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/vaspformat.cpp:536:32:
2026-02-12T07:23:44,332   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:23:44,333    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:23:44,334         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:24:05,718   [59/86] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/gamessus.cpp.o
2026-02-12T07:24:05,719   In file included from /usr/include/c++/12/vector:70,
2026-02-12T07:24:05,720                    from /usr/include/c++/12/functional:62,
2026-02-12T07:24:05,721                    from /usr/include/eigen3/Eigen/Core:85,
2026-02-12T07:24:05,721                    from /usr/include/eigen3/Eigen/Dense:1,
2026-02-12T07:24:05,722                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/matrix.h:10,
2026-02-12T07:24:05,723                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/variant.h:12,
2026-02-12T07:24:05,724                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/basisset.h:10,
2026-02-12T07:24:05,724                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/gaussianset.h:11,
2026-02-12T07:24:05,725                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/gamessus.h:10,
2026-02-12T07:24:05,726                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/gamessus.cpp:6:
2026-02-12T07:24:05,727   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2026-02-12T07:24:05,727   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2026-02-12T07:24:05,728     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:24:05,729         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:05,730   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’:
2026-02-12T07:24:05,731   /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator’ changed in GCC 7.1
2026-02-12T07:24:05,732     523 |     vector<_Tp, _Alloc>::
2026-02-12T07:24:05,732         |     ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:05,733   In file included from /usr/include/c++/12/vector:64:
2026-02-12T07:24:05,734   In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:24:05,735       inlined from ‘void Avogadro::Core::Array<T>::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:179:19,
2026-02-12T07:24:05,736       inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.h:1186:27,
2026-02-12T07:24:05,738       inlined from ‘void Avogadro::Core::AtomTemplate<Molecule_T>::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/atom.h:304:32,
2026-02-12T07:24:05,739       inlined from ‘void Avogadro::QuantumIO::GAMESSUSOutput::readAtomBlock(std::istream&, Avogadro::Core::Molecule&, bool)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/gamessus.cpp:143:25:
2026-02-12T07:24:05,740   /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:24:05,742    1032 |           _M_fill_insert(end(), __new_size - size(), __x);
2026-02-12T07:24:05,743         |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:05,745   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
2026-02-12T07:24:05,756   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2026-02-12T07:24:05,757     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:24:05,758         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:05,761   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:24:05,763       inlined from ‘void Avogadro::QuantumIO::GAMESSUSOutput::readEigenvectors(std::istream&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/gamessus.cpp:239:33:
2026-02-12T07:24:05,764   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:24:05,776    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:24:05,788         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:24:05,789   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:24:05,790       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:24:05,791       inlined from ‘void Avogadro::QuantumIO::GAMESSUSOutput::readEigenvectors(std::istream&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/gamessus.cpp:246:34:
2026-02-12T07:24:05,792   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:24:05,793     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:24:05,794         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:05,795   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:24:05,796       inlined from ‘void Avogadro::QuantumIO::GAMESSUSOutput::readEigenvectors(std::istream&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/gamessus.cpp:261:27:
2026-02-12T07:24:05,797   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:24:05,798    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:24:05,799         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:24:05,800   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:24:05,801       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:24:05,802       inlined from ‘void Avogadro::QuantumIO::GAMESSUSOutput::readBasisSet(std::istream&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/gamessus.cpp:204:22:
2026-02-12T07:24:05,803   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:24:05,804     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:24:05,805         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:05,805   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:24:05,806       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:24:05,816       inlined from ‘void Avogadro::QuantumIO::GAMESSUSOutput::readBasisSet(std::istream&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/gamessus.cpp:205:22:
2026-02-12T07:24:05,826   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:24:05,827     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:24:05,828         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:05,829   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:24:05,830       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:24:05,831       inlined from ‘void Avogadro::QuantumIO::GAMESSUSOutput::readBasisSet(std::istream&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/gamessus.cpp:207:26:
2026-02-12T07:24:05,832   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:24:05,833     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:24:05,834         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:09,868   [60/86] Building CXX object avogadro/io/CMakeFiles/IO.dir/cjsonformat.cpp.o
2026-02-12T07:24:09,868   In file included from /usr/include/c++/12/vector:70,
2026-02-12T07:24:09,869                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/fileformat.h:15,
2026-02-12T07:24:09,870                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/cjsonformat.h:9,
2026-02-12T07:24:09,871                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/cjsonformat.cpp:6:
2026-02-12T07:24:09,872   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’:
2026-02-12T07:24:09,873   /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator’ changed in GCC 7.1
2026-02-12T07:24:09,874     523 |     vector<_Tp, _Alloc>::
2026-02-12T07:24:09,875         |     ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:09,876   In file included from /usr/include/c++/12/vector:64:
2026-02-12T07:24:09,877   In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:24:09,878       inlined from ‘void Avogadro::Core::Array<T>::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:179:19,
2026-02-12T07:24:09,880       inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.h:1186:27:
2026-02-12T07:24:09,880   /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:24:09,881    1032 |           _M_fill_insert(end(), __new_size - size(), __x);
2026-02-12T07:24:09,882         |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:09,883   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Eigen::Matrix<double, 3, 1, 0, 3, 1>&}; _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’:
2026-02-12T07:24:09,884   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator’ changed in GCC 7.1
2026-02-12T07:24:09,885     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:24:09,886         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:09,887   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:24:09,888       inlined from ‘void Avogadro::Core::Array<T>::push_back(const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:252:22:
2026-02-12T07:24:09,894   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:24:09,906    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:24:09,908         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:24:09,910   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
2026-02-12T07:24:09,911   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2026-02-12T07:24:09,912     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:24:09,914         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:09,915   /usr/include/c++/12/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
2026-02-12T07:24:09,917   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:24:09,918     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:24:09,920         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:09,923   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2026-02-12T07:24:09,936   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2026-02-12T07:24:09,937     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:24:09,938         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:09,939   In file included from /usr/include/c++/12/map:60,
2026-02-12T07:24:09,940                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/layermanager.h:15,
2026-02-12T07:24:09,941                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/cjsonformat.cpp:12:
2026-02-12T07:24:09,946   /usr/include/c++/12/bits/stl_tree.h: In member function ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’:
2026-02-12T07:24:09,949   /usr/include/c++/12/bits/stl_tree.h:2209:5: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2026-02-12T07:24:09,950    2209 |     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
2026-02-12T07:24:09,951         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:09,952   /usr/include/c++/12/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::nullptr_t}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’:
2026-02-12T07:24:09,954   /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2026-02-12T07:24:09,955    2457 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
2026-02-12T07:24:09,957         |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:09,959   In file included from /usr/include/c++/12/map:61:
2026-02-12T07:24:09,965   In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::iterator std::map<_Key, _Tp, _Compare, _Alloc>::emplace_hint(const_iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::nullptr_t}; _Key = std::__cxx11::basic_string<char>; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’,
2026-02-12T07:24:09,976       inlined from ‘std::pair<typename std::_Rb_tree<_Key, std::pair<const _Key, _Val>, std::_Select1st<std::pair<const _Key, _Val> >, _Compare, typename __gnu_cxx::__alloc_traits<_Allocator>::rebind<std::pair<const _Key, _Val> >::other>::iterator, bool> std::map<_Key, _Tp, _Compare, _Alloc>::emplace(_Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::nullptr_t}; _Key = std::__cxx11::basic_string<char>; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’ at /usr/include/c++/12/bits/stl_map.h:599:22,
2026-02-12T07:24:09,977       inlined from ‘nlohmann::json_abi_v3_11_3::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType, CustomBaseClass>::value_type& nlohmann::json_abi_v3_11_3::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType, CustomBaseClass>::operator[](typename object_t::key_type) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_3::adl_serializer; BinaryType = std::vector<unsigned char>; CustomBaseClass = void]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/thirdparty/nlohmann/json.hpp:2132:57:
2026-02-12T07:24:09,978   /usr/include/c++/12/bits/stl_map.h:638:45: note: parameter passing for argument of type ‘std::map<std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<>, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’} changed in GCC 7.1
2026-02-12T07:24:09,979     638 |           return _M_t._M_emplace_hint_unique(__pos,
2026-02-12T07:24:09,980         |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
2026-02-12T07:24:09,981     639 |                                              std::forward<_Args>(__args)...);
2026-02-12T07:24:09,982         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:09,986   /usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’:
2026-02-12T07:24:09,988   /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2026-02-12T07:24:09,989    2457 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
2026-02-12T07:24:09,991         |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:09,993   /usr/include/c++/12/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’:
2026-02-12T07:24:09,995   /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2026-02-12T07:24:09,996     511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
2026-02-12T07:24:09,997         |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:09,999     512 |                                             std::tuple<const key_type&>(__k),
2026-02-12T07:24:10,000         |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:10,002     513 |                                             std::tuple<>());
2026-02-12T07:24:10,003         |                                             ~~~~~~~~~~~~~~~
2026-02-12T07:24:10,005   In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’,
2026-02-12T07:24:10,016       inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser<BasicJsonType>::key(string_t&) [with BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/thirdparty/nlohmann/detail/input/json_sax.hpp:246:79,
2026-02-12T07:24:10,026       inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::binary_reader<BasicJsonType, InputAdapterType, SAX>::get_msgpack_object(std::size_t) [with BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>; InputAdapterType = nlohmann::json_abi_v3_11_3::detail::input_stream_adapter; SAX = nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser<nlohmann::json_abi_v3_11_3::basic_json<> >]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/thirdparty/nlohmann/detail/input/binary_reader.hpp:1803:17:
2026-02-12T07:24:10,036   /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2026-02-12T07:24:10,037     511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
2026-02-12T07:24:10,038         |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:10,039     512 |                                             std::tuple<const key_type&>(__k),
2026-02-12T07:24:10,040         |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:10,042     513 |                                             std::tuple<>());
2026-02-12T07:24:10,042         |                                             ~~~~~~~~~~~~~~~
2026-02-12T07:24:10,043   In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:24:10,044       inlined from ‘void Avogadro::Core::Array<T>::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:179:19,
2026-02-12T07:24:10,045       inlined from ‘bool Avogadro::Core::Molecule::setForceVector(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.h:1259:28,
2026-02-12T07:24:10,046       inlined from ‘void Avogadro::Core::AtomTemplate<Molecule_T>::setForceVector(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/atom.h:390:29,
2026-02-12T07:24:10,047       inlined from ‘bool Avogadro::Io::CjsonFormat::deserialize(std::istream&, Avogadro::Core::Molecule&, bool)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/cjsonformat.cpp:285:25:
2026-02-12T07:24:10,048   /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:24:10,048    1032 |           _M_fill_insert(end(), __new_size - size(), __x);
2026-02-12T07:24:10,049         |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:10,050   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:24:10,051       inlined from ‘void Avogadro::Core::Array<T>::push_back(const ValueType&) [with T = double]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:252:22,
2026-02-12T07:24:10,053       inlined from ‘bool Avogadro::Io::CjsonFormat::deserialize(std::istream&, Avogadro::Core::Molecule&, bool)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/cjsonformat.cpp:760:24:
2026-02-12T07:24:10,054   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:24:10,055    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:24:10,066         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:24:10,076   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:24:10,077       inlined from ‘void Avogadro::Core::Array<T>::push_back(const ValueType&) [with T = double]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:252:22,
2026-02-12T07:24:10,078       inlined from ‘bool Avogadro::Io::CjsonFormat::deserialize(std::istream&, Avogadro::Core::Molecule&, bool)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/cjsonformat.cpp:768:25:
2026-02-12T07:24:10,079   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:24:10,080    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:24:10,081         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:24:10,082   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:24:10,083       inlined from ‘void Avogadro::Core::Array<T>::push_back(const ValueType&) [with T = double]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:252:22,
2026-02-12T07:24:10,084       inlined from ‘bool Avogadro::Io::CjsonFormat::deserialize(std::istream&, Avogadro::Core::Molecule&, bool)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/cjsonformat.cpp:776:25:
2026-02-12T07:24:10,085   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:24:10,086    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:24:10,086         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:24:10,087   In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:24:10,088       inlined from ‘void Avogadro::Core::Array<T>::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:179:19,
2026-02-12T07:24:10,089       inlined from ‘bool Avogadro::Io::CjsonFormat::deserialize(std::istream&, Avogadro::Core::Molecule&, bool)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/cjsonformat.cpp:786:22:
2026-02-12T07:24:10,089   /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:24:10,090    1032 |           _M_fill_insert(end(), __new_size - size(), __x);
2026-02-12T07:24:10,091         |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:14,720   [61/86] Building CXX object avogadro/io/CMakeFiles/IO.dir/turbomoleformat.cpp.o
2026-02-12T07:24:14,721   In file included from /usr/include/c++/12/vector:70,
2026-02-12T07:24:14,722                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/fileformat.h:15,
2026-02-12T07:24:14,723                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/turbomoleformat.h:9,
2026-02-12T07:24:14,724                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/turbomoleformat.cpp:6:
2026-02-12T07:24:14,725   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’:
2026-02-12T07:24:14,726   /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator’ changed in GCC 7.1
2026-02-12T07:24:14,727     523 |     vector<_Tp, _Alloc>::
2026-02-12T07:24:14,728         |     ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:14,729   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2026-02-12T07:24:14,730   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2026-02-12T07:24:14,731     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:24:14,732         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:14,733   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double&}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:24:14,734       inlined from ‘std::optional<std::vector<T> > Avogadro::Core::lexicalCast(Iterator, Iterator) [with T = double; Iterator = __gnu_cxx::__normal_iterator<std::__cxx11::basic_string<char>*, std::vector<std::__cxx11::basic_string<char> > >]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/utilities.h:152:26:
2026-02-12T07:24:14,735   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:24:14,736     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:24:14,737         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:14,738   In file included from /usr/include/c++/12/set:60,
2026-02-12T07:24:14,746                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/graph.h:13,
2026-02-12T07:24:14,756                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.h:17,
2026-02-12T07:24:14,757                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/turbomoleformat.cpp:9:
2026-02-12T07:24:14,758   /usr/include/c++/12/bits/stl_tree.h: In member function ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’:
2026-02-12T07:24:14,759   /usr/include/c++/12/bits/stl_tree.h:2209:5: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2026-02-12T07:24:14,760    2209 |     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
2026-02-12T07:24:14,761         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:14,762   /usr/include/c++/12/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, nlohmann::json_abi_v3_11_3::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::json_abi_v3_11_3::adl_serializer, std::vector<unsigned char, std::allocator<unsigned char> >, void>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’:
2026-02-12T07:24:14,763   /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2026-02-12T07:24:14,765    2457 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
2026-02-12T07:24:14,766         |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:14,767   /usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’:
2026-02-12T07:24:14,767   /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2026-02-12T07:24:14,768   In file included from /usr/include/c++/12/map:61,
2026-02-12T07:24:14,769                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/variantmap.h:13,
2026-02-12T07:24:14,776                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.h:19:
2026-02-12T07:24:14,786   In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::iterator std::map<_Key, _Tp, _Compare, _Alloc>::emplace_hint(const_iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, nlohmann::json_abi_v3_11_3::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::json_abi_v3_11_3::adl_serializer, std::vector<unsigned char, std::allocator<unsigned char> >, void>}; _Key = std::__cxx11::basic_string<char>; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’,
2026-02-12T07:24:14,789       inlined from ‘std::pair<typename std::_Rb_tree<_Key, std::pair<const _Key, _Val>, std::_Select1st<std::pair<const _Key, _Val> >, _Compare, typename __gnu_cxx::__alloc_traits<_Allocator>::rebind<std::pair<const _Key, _Val> >::other>::iterator, bool> std::map<_Key, _Tp, _Compare, _Alloc>::emplace(_Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, nlohmann::json_abi_v3_11_3::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::json_abi_v3_11_3::adl_serializer, std::vector<unsigned char, std::allocator<unsigned char> >, void>}; _Key = std::__cxx11::basic_string<char>; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’ at /usr/include/c++/12/bits/stl_map.h:599:22,
2026-02-12T07:24:14,791       inlined from ‘nlohmann::json_abi_v3_11_3::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType, CustomBaseClass>::basic_json(initializer_list_t, bool, value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_3::adl_serializer; BinaryType = std::vector<unsigned char, std::allocator<unsigned char> >; CustomBaseClass = void]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/thirdparty/nlohmann/json.hpp:942:47:
2026-02-12T07:24:14,792   /usr/include/c++/12/bits/stl_map.h:638:45: note: parameter passing for argument of type ‘std::map<std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<>, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’} changed in GCC 7.1
2026-02-12T07:24:14,795     638 |           return _M_t._M_emplace_hint_unique(__pos,
2026-02-12T07:24:14,796         |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
2026-02-12T07:24:14,797     639 |                                              std::forward<_Args>(__args)...);
2026-02-12T07:24:14,798         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:14,799   In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’,
2026-02-12T07:24:14,800       inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::json_sax_dom_callback_parser<BasicJsonType>::key(string_t&) [with BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/thirdparty/nlohmann/detail/input/json_sax.hpp:441:83:
2026-02-12T07:24:14,801   /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2026-02-12T07:24:14,802     511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
2026-02-12T07:24:14,803         |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:14,804     512 |                                             std::tuple<const key_type&>(__k),
2026-02-12T07:24:14,805         |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:14,807     513 |                                             std::tuple<>());
2026-02-12T07:24:14,809         |                                             ~~~~~~~~~~~~~~~
2026-02-12T07:24:14,810   In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’,
2026-02-12T07:24:14,811       inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser<BasicJsonType>::key(string_t&) [with BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/thirdparty/nlohmann/detail/input/json_sax.hpp:246:79,
2026-02-12T07:24:14,826       inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::parser<BasicJsonType, InputAdapterType>::sax_parse_internal(SAX*) [with SAX = nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser<nlohmann::json_abi_v3_11_3::basic_json<> >; BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>; InputAdapterType = nlohmann::json_abi_v3_11_3::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator<const char*, std::__cxx11::basic_string<char> > >]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/thirdparty/nlohmann/detail/input/parser.hpp:219:29:
2026-02-12T07:24:14,836   /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2026-02-12T07:24:14,837     511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
2026-02-12T07:24:14,837         |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:14,838     512 |                                             std::tuple<const key_type&>(__k),
2026-02-12T07:24:14,839         |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:14,840     513 |                                             std::tuple<>());
2026-02-12T07:24:14,841         |                                             ~~~~~~~~~~~~~~~
2026-02-12T07:24:14,842   In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’,
2026-02-12T07:24:14,843       inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser<BasicJsonType>::key(string_t&) [with BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/thirdparty/nlohmann/detail/input/json_sax.hpp:246:79,
2026-02-12T07:24:14,844       inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::parser<BasicJsonType, InputAdapterType>::sax_parse_internal(SAX*) [with SAX = nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser<nlohmann::json_abi_v3_11_3::basic_json<> >; BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>; InputAdapterType = nlohmann::json_abi_v3_11_3::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator<const char*, std::__cxx11::basic_string<char> > >]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/thirdparty/nlohmann/detail/input/parser.hpp:430:21:
2026-02-12T07:24:14,845   /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2026-02-12T07:24:14,846     511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
2026-02-12T07:24:14,848         |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:14,850     512 |                                             std::tuple<const key_type&>(__k),
2026-02-12T07:24:14,851         |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:14,852     513 |                                             std::tuple<>());
2026-02-12T07:24:14,854         |                                             ~~~~~~~~~~~~~~~
2026-02-12T07:24:14,855   In file included from /usr/include/c++/12/vector:64:
2026-02-12T07:24:14,856   In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:24:14,857       inlined from ‘void Avogadro::Core::Array<T>::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:179:19,
2026-02-12T07:24:14,858       inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.h:1186:27,
2026-02-12T07:24:14,866       inlined from ‘void Avogadro::Core::AtomTemplate<Molecule_T>::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/atom.h:304:32,
2026-02-12T07:24:14,876       inlined from ‘virtual bool Avogadro::Io::TurbomoleFormat::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/turbomoleformat.cpp:141:30:
2026-02-12T07:24:14,886   /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:24:14,887    1032 |           _M_fill_insert(end(), __new_size - size(), __x);
2026-02-12T07:24:14,888         |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:14,889   In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:24:14,890       inlined from ‘void Avogadro::Core::Array<T>::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:179:19,
2026-02-12T07:24:14,891       inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.h:1186:27,
2026-02-12T07:24:14,892       inlined from ‘virtual bool Avogadro::Io::TurbomoleFormat::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/turbomoleformat.cpp:357:28:
2026-02-12T07:24:14,893   /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:24:14,894    1032 |           _M_fill_insert(end(), __new_size - size(), __x);
2026-02-12T07:24:14,895         |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:15,286   [62/86] Building CXX object avogadro/io/CMakeFiles/IO.dir/xyzformat.cpp.o
2026-02-12T07:24:15,287   In file included from /usr/include/c++/12/vector:70,
2026-02-12T07:24:15,288                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/fileformat.h:15,
2026-02-12T07:24:15,289                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/xyzformat.h:9,
2026-02-12T07:24:15,290                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/xyzformat.cpp:6:
2026-02-12T07:24:15,291   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2026-02-12T07:24:15,292   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2026-02-12T07:24:15,292     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:24:15,293         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:15,294   In file included from /usr/include/c++/12/vector:64:
2026-02-12T07:24:15,295   /usr/include/c++/12/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’:
2026-02-12T07:24:15,306   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:24:15,307    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:24:15,307         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:24:15,308   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’:
2026-02-12T07:24:15,309   /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator’ changed in GCC 7.1
2026-02-12T07:24:15,310     523 |     vector<_Tp, _Alloc>::
2026-02-12T07:24:15,311         |     ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:15,313   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2026-02-12T07:24:15,315   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2026-02-12T07:24:15,316     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:24:15,318         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:15,319   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double&}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:24:15,320       inlined from ‘std::optional<std::vector<T> > Avogadro::Core::lexicalCast(Iterator, Iterator) [with T = double; Iterator = __gnu_cxx::__normal_iterator<std::__cxx11::basic_string<char>*, std::vector<std::__cxx11::basic_string<char> > >]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/utilities.h:152:26:
2026-02-12T07:24:15,323   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:24:15,324     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:24:15,325         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:15,327   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Eigen::Matrix<double, 3, 1, 0, 3, 1>&}; _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’:
2026-02-12T07:24:15,328   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator’ changed in GCC 7.1
2026-02-12T07:24:15,331     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:24:15,336         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:15,337   In file included from /usr/include/c++/12/set:60,
2026-02-12T07:24:15,337                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/graph.h:13,
2026-02-12T07:24:15,340                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.h:17,
2026-02-12T07:24:15,346                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/xyzformat.cpp:9:
2026-02-12T07:24:15,347   /usr/include/c++/12/bits/stl_tree.h: In member function ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’:
2026-02-12T07:24:15,356   /usr/include/c++/12/bits/stl_tree.h:2209:5: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2026-02-12T07:24:15,357    2209 |     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
2026-02-12T07:24:15,358         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:15,359   /usr/include/c++/12/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, nlohmann::json_abi_v3_11_3::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::json_abi_v3_11_3::adl_serializer, std::vector<unsigned char, std::allocator<unsigned char> >, void>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’:
2026-02-12T07:24:15,360   /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2026-02-12T07:24:15,361    2457 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
2026-02-12T07:24:15,362         |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:15,363   /usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’:
2026-02-12T07:24:15,364   /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2026-02-12T07:24:15,365   In file included from /usr/include/c++/12/map:61,
2026-02-12T07:24:15,366                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/variantmap.h:13,
2026-02-12T07:24:15,367                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.h:19:
2026-02-12T07:24:15,371   In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::iterator std::map<_Key, _Tp, _Compare, _Alloc>::emplace_hint(const_iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, nlohmann::json_abi_v3_11_3::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::json_abi_v3_11_3::adl_serializer, std::vector<unsigned char, std::allocator<unsigned char> >, void>}; _Key = std::__cxx11::basic_string<char>; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’,
2026-02-12T07:24:15,372       inlined from ‘std::pair<typename std::_Rb_tree<_Key, std::pair<const _Key, _Val>, std::_Select1st<std::pair<const _Key, _Val> >, _Compare, typename __gnu_cxx::__alloc_traits<_Allocator>::rebind<std::pair<const _Key, _Val> >::other>::iterator, bool> std::map<_Key, _Tp, _Compare, _Alloc>::emplace(_Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, nlohmann::json_abi_v3_11_3::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::json_abi_v3_11_3::adl_serializer, std::vector<unsigned char, std::allocator<unsigned char> >, void>}; _Key = std::__cxx11::basic_string<char>; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’ at /usr/include/c++/12/bits/stl_map.h:599:22,
2026-02-12T07:24:15,373       inlined from ‘nlohmann::json_abi_v3_11_3::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType, CustomBaseClass>::basic_json(initializer_list_t, bool, value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_3::adl_serializer; BinaryType = std::vector<unsigned char, std::allocator<unsigned char> >; CustomBaseClass = void]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/thirdparty/nlohmann/json.hpp:942:47:
2026-02-12T07:24:15,374   /usr/include/c++/12/bits/stl_map.h:638:45: note: parameter passing for argument of type ‘std::map<std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<>, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’} changed in GCC 7.1
2026-02-12T07:24:15,378     638 |           return _M_t._M_emplace_hint_unique(__pos,
2026-02-12T07:24:15,379         |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
2026-02-12T07:24:15,380     639 |                                              std::forward<_Args>(__args)...);
2026-02-12T07:24:15,381         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:15,382   In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’,
2026-02-12T07:24:15,383       inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::json_sax_dom_callback_parser<BasicJsonType>::key(string_t&) [with BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/thirdparty/nlohmann/detail/input/json_sax.hpp:441:83:
2026-02-12T07:24:15,383   /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2026-02-12T07:24:15,384     511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
2026-02-12T07:24:15,386         |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:15,392     512 |                                             std::tuple<const key_type&>(__k),
2026-02-12T07:24:15,394         |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:15,395     513 |                                             std::tuple<>());
2026-02-12T07:24:15,397         |                                             ~~~~~~~~~~~~~~~
2026-02-12T07:24:15,398   In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’,
2026-02-12T07:24:15,399       inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser<BasicJsonType>::key(string_t&) [with BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/thirdparty/nlohmann/detail/input/json_sax.hpp:246:79,
2026-02-12T07:24:15,400       inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::parser<BasicJsonType, InputAdapterType>::sax_parse_internal(SAX*) [with SAX = nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser<nlohmann::json_abi_v3_11_3::basic_json<> >; BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>; InputAdapterType = nlohmann::json_abi_v3_11_3::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator<const char*, std::__cxx11::basic_string<char> > >]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/thirdparty/nlohmann/detail/input/parser.hpp:219:29:
2026-02-12T07:24:15,402   /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2026-02-12T07:24:15,402     511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
2026-02-12T07:24:15,403         |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:15,406     512 |                                             std::tuple<const key_type&>(__k),
2026-02-12T07:24:15,407         |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:15,409     513 |                                             std::tuple<>());
2026-02-12T07:24:15,409         |                                             ~~~~~~~~~~~~~~~
2026-02-12T07:24:15,410   In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’,
2026-02-12T07:24:15,416       inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser<BasicJsonType>::key(string_t&) [with BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/thirdparty/nlohmann/detail/input/json_sax.hpp:246:79,
2026-02-12T07:24:15,417       inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::parser<BasicJsonType, InputAdapterType>::sax_parse_internal(SAX*) [with SAX = nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser<nlohmann::json_abi_v3_11_3::basic_json<> >; BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>; InputAdapterType = nlohmann::json_abi_v3_11_3::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator<const char*, std::__cxx11::basic_string<char> > >]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/thirdparty/nlohmann/detail/input/parser.hpp:430:21:
2026-02-12T07:24:15,419   /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2026-02-12T07:24:15,420     511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
2026-02-12T07:24:15,421         |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:15,421     512 |                                             std::tuple<const key_type&>(__k),
2026-02-12T07:24:15,422         |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:15,424     513 |                                             std::tuple<>());
2026-02-12T07:24:15,424         |                                             ~~~~~~~~~~~~~~~
2026-02-12T07:24:15,426   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:24:15,436       inlined from ‘virtual bool Avogadro::Io::XyzFormat::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/xyzformat.cpp:104:23:
2026-02-12T07:24:15,437   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:24:15,438    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:24:15,440         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:24:15,441   In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:24:15,442       inlined from ‘void Avogadro::Core::Array<T>::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:179:19,
2026-02-12T07:24:15,443       inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.h:1186:27,
2026-02-12T07:24:15,444       inlined from ‘void Avogadro::Core::AtomTemplate<Molecule_T>::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/atom.h:304:32,
2026-02-12T07:24:15,446       inlined from ‘virtual bool Avogadro::Io::XyzFormat::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/xyzformat.cpp:232:26:
2026-02-12T07:24:15,448   /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:24:15,449    1032 |           _M_fill_insert(end(), __new_size - size(), __x);
2026-02-12T07:24:15,451         |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:15,453   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:24:15,457       inlined from ‘virtual bool Avogadro::Io::XyzFormat::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/xyzformat.cpp:237:26:
2026-02-12T07:24:15,459   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:24:15,460    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:24:15,463         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:24:15,463   In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:24:15,464       inlined from ‘void Avogadro::Core::Array<T>::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:179:19,
2026-02-12T07:24:15,466       inlined from ‘bool Avogadro::Core::Molecule::setForceVector(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.h:1259:28,
2026-02-12T07:24:15,477       inlined from ‘void Avogadro::Core::AtomTemplate<Molecule_T>::setForceVector(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/atom.h:390:29,
2026-02-12T07:24:15,478       inlined from ‘virtual bool Avogadro::Io::XyzFormat::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/xyzformat.cpp:247:31:
2026-02-12T07:24:15,479   /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:24:15,480    1032 |           _M_fill_insert(end(), __new_size - size(), __x);
2026-02-12T07:24:15,481         |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:15,482   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:24:15,484       inlined from ‘void Avogadro::Core::Array<T>::push_back(const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:252:22,
2026-02-12T07:24:15,485       inlined from ‘virtual bool Avogadro::Io::XyzFormat::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/xyzformat.cpp:302:30:
2026-02-12T07:24:15,488   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:24:15,493    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:24:15,495         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:24:29,438   [63/86] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/gaussianfchk.cpp.o
2026-02-12T07:24:29,439   In file included from /usr/include/c++/12/vector:70,
2026-02-12T07:24:29,440                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:12,
2026-02-12T07:24:29,441                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/gaussianfchk.h:11,
2026-02-12T07:24:29,442                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/gaussianfchk.cpp:6:
2026-02-12T07:24:29,443   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’:
2026-02-12T07:24:29,444   /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator’ changed in GCC 7.1
2026-02-12T07:24:29,445     523 |     vector<_Tp, _Alloc>::
2026-02-12T07:24:29,446         |     ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:29,447   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2026-02-12T07:24:29,448   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2026-02-12T07:24:29,449     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:24:29,451         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:29,452   In file included from /usr/include/c++/12/vector:64:
2026-02-12T07:24:29,453   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:24:29,454       inlined from ‘void Avogadro::Core::Array<T>::push_back(const ValueType&) [with T = double]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:252:22:
2026-02-12T07:24:29,455   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:24:29,456    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:24:29,457         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:24:29,466   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Eigen::Matrix<double, 3, 1, 0, 3, 1>&}; _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’:
2026-02-12T07:24:29,476   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator’ changed in GCC 7.1
2026-02-12T07:24:29,486     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:24:29,487         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:29,487   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:24:29,488       inlined from ‘void Avogadro::Core::Array<T>::push_back(const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:252:22:
2026-02-12T07:24:29,489   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:24:29,490    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:24:29,491         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:24:29,492   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
2026-02-12T07:24:29,493   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2026-02-12T07:24:29,493     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:24:29,494         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:29,495   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:24:29,496       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:24:29,497       inlined from ‘std::vector<double> Avogadro::QuantumIO::GaussianFchk::readArrayD(std::istream&, unsigned int, int, double)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/gaussianfchk.cpp:435:22:
2026-02-12T07:24:29,498   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:24:29,499     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:24:29,500         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:29,501   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:24:29,502       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:24:29,503       inlined from ‘std::vector<double> Avogadro::QuantumIO::GaussianFchk::readArrayD(std::istream&, unsigned int, int, double)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/gaussianfchk.cpp:453:22:
2026-02-12T07:24:29,504   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:24:29,516     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:24:29,526         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:29,536   In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:24:29,537       inlined from ‘void Avogadro::Core::Array<T>::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:179:19,
2026-02-12T07:24:29,539       inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.h:1186:27,
2026-02-12T07:24:29,540       inlined from ‘void Avogadro::Core::AtomTemplate<Molecule_T>::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/atom.h:304:32,
2026-02-12T07:24:29,541       inlined from ‘virtual bool Avogadro::QuantumIO::GaussianFchk::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/gaussianfchk.cpp:60:20:
2026-02-12T07:24:29,542   /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:24:29,543    1032 |           _M_fill_insert(end(), __new_size - size(), __x);
2026-02-12T07:24:29,544         |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:38,132   [64/86] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/genericoutput.cpp.o
2026-02-12T07:24:43,094   [65/86] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/gaussiancube.cpp.o
2026-02-12T07:24:43,094   In file included from /usr/include/c++/12/vector:70,
2026-02-12T07:24:43,095                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/fileformat.h:15,
2026-02-12T07:24:43,096                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/gaussiancube.h:10,
2026-02-12T07:24:43,097                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/gaussiancube.cpp:6:
2026-02-12T07:24:43,098   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’:
2026-02-12T07:24:43,100   /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator’ changed in GCC 7.1
2026-02-12T07:24:43,101     523 |     vector<_Tp, _Alloc>::
2026-02-12T07:24:43,102         |     ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:43,103   In file included from /usr/include/c++/12/vector:64:
2026-02-12T07:24:43,105   In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:24:43,105       inlined from ‘void Avogadro::Core::Array<T>::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:179:19,
2026-02-12T07:24:43,106       inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.h:1186:27,
2026-02-12T07:24:43,107       inlined from ‘void Avogadro::Core::AtomTemplate<Molecule_T>::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/atom.h:304:32,
2026-02-12T07:24:43,108       inlined from ‘virtual bool Avogadro::QuantumIO::GaussianCube::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/gaussiancube.cpp:80:20:
2026-02-12T07:24:43,109   /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:24:43,110    1032 |           _M_fill_insert(end(), __new_size - size(), __x);
2026-02-12T07:24:43,111         |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:58,106   [66/86] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/molden.cpp.o
2026-02-12T07:24:58,106   In file included from /usr/include/c++/12/vector:70,
2026-02-12T07:24:58,107                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:12,
2026-02-12T07:24:58,108                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/molden.h:10,
2026-02-12T07:24:58,109                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/molden.cpp:6:
2026-02-12T07:24:58,110   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2026-02-12T07:24:58,111   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2026-02-12T07:24:58,112     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:24:58,113         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:58,114   In file included from /usr/include/c++/12/vector:64:
2026-02-12T07:24:58,115   /usr/include/c++/12/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’:
2026-02-12T07:24:58,116   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:24:58,117    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:24:58,117         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:24:58,119   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:24:58,119       inlined from ‘void Avogadro::Core::Array<T>::push_back(const ValueType&) [with T = double]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:252:22:
2026-02-12T07:24:58,121   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:24:58,123    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:24:58,136         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:24:58,146   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’:
2026-02-12T07:24:58,156   /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator’ changed in GCC 7.1
2026-02-12T07:24:58,157     523 |     vector<_Tp, _Alloc>::
2026-02-12T07:24:58,158         |     ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:58,159   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’:
2026-02-12T07:24:58,160   /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2026-02-12T07:24:58,161   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Eigen::Matrix<double, 3, 1, 0, 3, 1>&}; _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’:
2026-02-12T07:24:58,162   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator’ changed in GCC 7.1
2026-02-12T07:24:58,163     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:24:58,163         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:58,164   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:24:58,166       inlined from ‘void Avogadro::Core::Array<T>::push_back(const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:252:22:
2026-02-12T07:24:58,167   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:24:58,168    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:24:58,169         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:24:58,170   In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:24:58,171       inlined from ‘void Avogadro::Core::Array<T>::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:179:19,
2026-02-12T07:24:58,172       inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.h:1186:27,
2026-02-12T07:24:58,176       inlined from ‘void Avogadro::Core::AtomTemplate<Molecule_T>::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/atom.h:304:32,
2026-02-12T07:24:58,186       inlined from ‘virtual bool Avogadro::QuantumIO::MoldenFile::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/molden.cpp:59:20:
2026-02-12T07:24:58,196   /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:24:58,197    1032 |           _M_fill_insert(end(), __new_size - size(), __x);
2026-02-12T07:24:58,198         |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:24:58,198   In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:24:58,199       inlined from ‘void Avogadro::Core::Array<T>::resize(const std::size_t&, const ValueType&) [with T = double]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:179:19,
2026-02-12T07:24:58,200       inlined from ‘virtual bool Avogadro::QuantumIO::MoldenFile::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/molden.cpp:75:29:
2026-02-12T07:24:58,201   /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:24:58,202    1032 |           _M_fill_insert(end(), __new_size - size(), __x);
2026-02-12T07:24:58,202         |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:25:07,251   [67/86] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/genericjson.cpp.o
2026-02-12T07:25:07,252   In file included from /usr/include/c++/12/map:60,
2026-02-12T07:25:07,253                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/genericjson.h:12,
2026-02-12T07:25:07,254                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/genericjson.cpp:6:
2026-02-12T07:25:07,255   /usr/include/c++/12/bits/stl_tree.h: In member function ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’:
2026-02-12T07:25:07,255   /usr/include/c++/12/bits/stl_tree.h:2209:5: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2026-02-12T07:25:07,256    2209 |     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
2026-02-12T07:25:07,257         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:25:07,258   /usr/include/c++/12/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::nullptr_t}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’:
2026-02-12T07:25:07,259   /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2026-02-12T07:25:07,260    2457 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
2026-02-12T07:25:07,261         |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:25:07,262   In file included from /usr/include/c++/12/map:61:
2026-02-12T07:25:07,263   In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::iterator std::map<_Key, _Tp, _Compare, _Alloc>::emplace_hint(const_iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::nullptr_t}; _Key = std::__cxx11::basic_string<char>; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’,
2026-02-12T07:25:07,264       inlined from ‘std::pair<typename std::_Rb_tree<_Key, std::pair<const _Key, _Tp>, std::_Select1st<std::pair<const _Key, _Tp> >, _Compare, typename __gnu_cxx::__alloc_traits<_Allocator>::rebind<std::pair<const _Key, _Tp> >::other>::iterator, bool> std::map<_Key, _Tp, _Compare, _Alloc>::emplace(_Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::nullptr_t}; _Key = std::__cxx11::basic_string<char>; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’ at /usr/include/c++/12/bits/stl_map.h:599:22,
2026-02-12T07:25:07,264       inlined from ‘nlohmann::json_abi_v3_11_3::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType, CustomBaseClass>::value_type& nlohmann::json_abi_v3_11_3::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType, CustomBaseClass>::operator[](typename object_t::key_type) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_3::adl_serializer; BinaryType = std::vector<unsigned char>; CustomBaseClass = void]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/thirdparty/nlohmann/json.hpp:2132:57:
2026-02-12T07:25:07,265   /usr/include/c++/12/bits/stl_map.h:638:45: note: parameter passing for argument of type ‘std::map<std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<>, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’} changed in GCC 7.1
2026-02-12T07:25:07,266     638 |           return _M_t._M_emplace_hint_unique(__pos,
2026-02-12T07:25:07,267         |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
2026-02-12T07:25:07,268     639 |                                              std::forward<_Args>(__args)...);
2026-02-12T07:25:07,270         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:25:07,271   /usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’:
2026-02-12T07:25:07,272   /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2026-02-12T07:25:07,286    2457 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
2026-02-12T07:25:07,296         |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:25:07,297   In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’,
2026-02-12T07:25:07,298       inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::json_sax_dom_callback_parser<BasicJsonType>::key(string_t&) [with BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/thirdparty/nlohmann/detail/input/json_sax.hpp:441:83:
2026-02-12T07:25:07,298   /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2026-02-12T07:25:07,299     511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
2026-02-12T07:25:07,300         |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:25:07,301     512 |                                             std::tuple<const key_type&>(__k),
2026-02-12T07:25:07,302         |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:25:07,303     513 |                                             std::tuple<>());
2026-02-12T07:25:07,303         |                                             ~~~~~~~~~~~~~~~
2026-02-12T07:25:07,304   In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’,
2026-02-12T07:25:07,305       inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser<BasicJsonType>::key(string_t&) [with BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/thirdparty/nlohmann/detail/input/json_sax.hpp:246:79,
2026-02-12T07:25:07,306       inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::parser<BasicJsonType, InputAdapterType>::sax_parse_internal(SAX*) [with SAX = nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser<nlohmann::json_abi_v3_11_3::basic_json<> >; BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>; InputAdapterType = nlohmann::json_abi_v3_11_3::detail::input_stream_adapter]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/thirdparty/nlohmann/detail/input/parser.hpp:219:29:
2026-02-12T07:25:07,307   /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2026-02-12T07:25:07,307     511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
2026-02-12T07:25:07,308         |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:25:07,309     512 |                                             std::tuple<const key_type&>(__k),
2026-02-12T07:25:07,310         |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:25:07,311     513 |                                             std::tuple<>());
2026-02-12T07:25:07,312         |                                             ~~~~~~~~~~~~~~~
2026-02-12T07:25:07,312   In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’,
2026-02-12T07:25:07,313       inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser<BasicJsonType>::key(string_t&) [with BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/thirdparty/nlohmann/detail/input/json_sax.hpp:246:79,
2026-02-12T07:25:07,314       inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::parser<BasicJsonType, InputAdapterType>::sax_parse_internal(SAX*) [with SAX = nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser<nlohmann::json_abi_v3_11_3::basic_json<> >; BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>; InputAdapterType = nlohmann::json_abi_v3_11_3::detail::input_stream_adapter]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/thirdparty/nlohmann/detail/input/parser.hpp:430:21:
2026-02-12T07:25:07,315   /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2026-02-12T07:25:07,316     511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
2026-02-12T07:25:07,317         |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:25:07,318     512 |                                             std::tuple<const key_type&>(__k),
2026-02-12T07:25:07,319         |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:25:07,320     513 |                                             std::tuple<>());
2026-02-12T07:25:07,326         |                                             ~~~~~~~~~~~~~~~
2026-02-12T07:25:23,044   [68/86] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/mopacaux.cpp.o
2026-02-12T07:25:23,044   In file included from /usr/include/c++/12/vector:70,
2026-02-12T07:25:23,045                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:12,
2026-02-12T07:25:23,046                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/mopacaux.h:10,
2026-02-12T07:25:23,047                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/mopacaux.cpp:6:
2026-02-12T07:25:23,047   /usr/include/c++/12/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]’:
2026-02-12T07:25:23,048   /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2026-02-12T07:25:23,049     739 |       vector<_Tp, _Alloc>::
2026-02-12T07:25:23,050         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:25:23,051   /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:25:23,052   /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:25:23,053   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’:
2026-02-12T07:25:23,054   /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector<Eigen::Matrix<double, 3, 1> >::iterator’ changed in GCC 7.1
2026-02-12T07:25:23,055     523 |     vector<_Tp, _Alloc>::
2026-02-12T07:25:23,056         |     ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:25:23,058   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Eigen::Matrix<double, 3, 1, 0, 3, 1>&}; _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’:
2026-02-12T07:25:23,059   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<Eigen::Matrix<double, 3, 1> >::iterator’ changed in GCC 7.1
2026-02-12T07:25:23,066     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:25:23,076         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:25:23,086   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
2026-02-12T07:25:23,087   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2026-02-12T07:25:23,087   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:25:23,088       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:25:23,089       inlined from ‘std::vector<double> Avogadro::QuantumIO::MopacAux::readArrayD(std::istream&, unsigned int)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/mopacaux.cpp:340:20:
2026-02-12T07:25:23,091   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:25:23,091     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:25:23,092         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:25:23,093   In file included from /usr/include/c++/12/vector:64:
2026-02-12T07:25:23,094   In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:25:23,095       inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1481:22,
2026-02-12T07:25:23,096       inlined from ‘bool Avogadro::QuantumIO::MopacAux::readVibrationFrequencies(std::istream&, unsigned int)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/mopacaux.cpp:398:23:
2026-02-12T07:25:23,097   /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2026-02-12T07:25:23,099    1779 |           _M_range_insert(__pos, __first, __last,
2026-02-12T07:25:23,099         |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:25:23,100    1780 |                           std::__iterator_category(__first));
2026-02-12T07:25:23,106         |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:25:23,116   /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:25:23,126   In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:25:23,127       inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1481:22,
2026-02-12T07:25:23,128       inlined from ‘bool Avogadro::QuantumIO::MopacAux::readVibrationIntensities(std::istream&, unsigned int)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/mopacaux.cpp:405:25:
2026-02-12T07:25:23,129   /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2026-02-12T07:25:23,129    1779 |           _M_range_insert(__pos, __first, __last,
2026-02-12T07:25:23,130         |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:25:23,131    1780 |                           std::__iterator_category(__first));
2026-02-12T07:25:23,132         |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:25:23,133   /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:25:23,134   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:25:23,135       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:25:23,136       inlined from ‘void Avogadro::QuantumIO::MopacAux::processLine(std::istream&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/mopacaux.cpp:151:27:
2026-02-12T07:25:23,137   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:25:23,138     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:25:23,140         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:25:23,141   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:25:23,142       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:25:23,142       inlined from ‘void Avogadro::QuantumIO::MopacAux::processLine(std::istream&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/mopacaux.cpp:157:25:
2026-02-12T07:25:23,143   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:25:23,144     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:25:23,146         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:25:23,156   In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:25:23,166       inlined from ‘void Avogadro::Core::Array<T>::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:179:19,
2026-02-12T07:25:23,167       inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.h:1186:27,
2026-02-12T07:25:23,167       inlined from ‘void Avogadro::Core::AtomTemplate<Molecule_T>::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/atom.h:304:32,
2026-02-12T07:25:23,168       inlined from ‘virtual bool Avogadro::QuantumIO::MopacAux::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/mopacaux.cpp:51:20:
2026-02-12T07:25:23,169   /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1> > >’ changed in GCC 7.1
2026-02-12T07:25:23,170    1032 |           _M_fill_insert(end(), __new_size - size(), __x);
2026-02-12T07:25:23,171         |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:25:23,172   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:25:23,173       inlined from ‘void Avogadro::Core::Array<T>::push_back(const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:252:22,
2026-02-12T07:25:23,174       inlined from ‘virtual bool Avogadro::QuantumIO::MopacAux::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/mopacaux.cpp:81:27:
2026-02-12T07:25:23,175   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1> > >’ changed in GCC 7.1
2026-02-12T07:25:23,176    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:25:23,177         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:25:23,177   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:25:23,178       inlined from ‘void Avogadro::Core::Array<T>::push_back(const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:252:22,
2026-02-12T07:25:23,179       inlined from ‘virtual bool Avogadro::QuantumIO::MopacAux::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/mopacaux.cpp:115:28:
2026-02-12T07:25:23,180   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1> > >’ changed in GCC 7.1
2026-02-12T07:25:23,180    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:25:23,181         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:25:28,067   [69/86] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/nwchemlog.cpp.o
2026-02-12T07:25:28,068   In file included from /usr/include/c++/12/vector:70,
2026-02-12T07:25:28,069                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:12,
2026-02-12T07:25:28,071                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/nwchemlog.h:10,
2026-02-12T07:25:28,072                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/nwchemlog.cpp:6:
2026-02-12T07:25:28,073   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’:
2026-02-12T07:25:28,076   /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator’ changed in GCC 7.1
2026-02-12T07:25:28,077     523 |     vector<_Tp, _Alloc>::
2026-02-12T07:25:28,078         |     ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:25:28,079   In file included from /usr/include/c++/12/vector:64:
2026-02-12T07:25:28,080   In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:25:28,081       inlined from ‘void Avogadro::Core::Array<T>::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:179:19,
2026-02-12T07:25:28,082       inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.h:1186:27,
2026-02-12T07:25:28,083       inlined from ‘void Avogadro::Core::AtomTemplate<Molecule_T>::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/atom.h:304:32,
2026-02-12T07:25:28,084       inlined from ‘void Avogadro::QuantumIO::NWChemLog::readAtoms(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/nwchemlog.cpp:145:20:
2026-02-12T07:25:28,085   /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:25:28,086    1032 |           _M_fill_insert(end(), __new_size - size(), __x);
2026-02-12T07:25:28,087         |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:25:28,087   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
2026-02-12T07:25:28,088   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2026-02-12T07:25:28,089     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:25:28,089         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:25:28,090   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2026-02-12T07:25:28,091   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2026-02-12T07:25:28,092   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:25:28,092       inlined from ‘void Avogadro::Core::Array<T>::push_back(const ValueType&) [with T = double]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:252:22,
2026-02-12T07:25:28,093       inlined from ‘void Avogadro::QuantumIO::NWChemLog::readIntensities(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/nwchemlog.cpp:261:28:
2026-02-12T07:25:28,094   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:25:28,096    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:25:28,096         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:25:28,097   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Eigen::Matrix<double, 3, 1, 0, 3, 1>&}; _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’:
2026-02-12T07:25:28,098   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator’ changed in GCC 7.1
2026-02-12T07:25:28,099     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:25:28,109         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:25:28,110   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:25:28,111       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:25:28,112       inlined from ‘void Avogadro::QuantumIO::NWChemLog::readFrequencies(const std::string&, std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/nwchemlog.cpp:204:26:
2026-02-12T07:25:28,113   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:25:28,114     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:25:28,116         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:25:28,117   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:25:28,118       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:25:28,120       inlined from ‘void Avogadro::QuantumIO::NWChemLog::readFrequencies(const std::string&, std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/nwchemlog.cpp:225:28:
2026-02-12T07:25:28,120   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:25:28,121     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:25:28,122         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:25:28,123   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:25:28,124       inlined from ‘void Avogadro::Core::Array<T>::push_back(const ValueType&) [with T = double]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:252:22,
2026-02-12T07:25:28,125       inlined from ‘void Avogadro::QuantumIO::NWChemLog::readFrequencies(const std::string&, std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/nwchemlog.cpp:236:28:
2026-02-12T07:25:28,125   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:25:28,126    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:25:28,128         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:25:28,129   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:25:28,129       inlined from ‘void Avogadro::Core::Array<T>::push_back(const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:252:22,
2026-02-12T07:25:28,131       inlined from ‘void Avogadro::QuantumIO::NWChemLog::readFrequencies(const std::string&, std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/nwchemlog.cpp:239:19:
2026-02-12T07:25:28,132   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:25:28,133    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:25:28,134         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:26:26,920   [70/86] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/nwchemjson.cpp.o
2026-02-12T07:26:26,921   In file included from /usr/include/c++/12/vector:70,
2026-02-12T07:26:26,922                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/fileformat.h:15,
2026-02-12T07:26:26,923                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/nwchemjson.h:10,
2026-02-12T07:26:26,924                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/nwchemjson.cpp:6:
2026-02-12T07:26:26,926   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’:
2026-02-12T07:26:26,927   /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator’ changed in GCC 7.1
2026-02-12T07:26:26,928     523 |     vector<_Tp, _Alloc>::
2026-02-12T07:26:26,929         |     ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:26:26,930   In file included from /usr/include/c++/12/vector:64:
2026-02-12T07:26:26,931   In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:26:26,931       inlined from ‘void Avogadro::Core::Array<T>::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:179:19:
2026-02-12T07:26:26,932   /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:26:26,933    1032 |           _M_fill_insert(end(), __new_size - size(), __x);
2026-02-12T07:26:26,934         |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:26:26,935   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
2026-02-12T07:26:26,936   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2026-02-12T07:26:26,937     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:26:26,938         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:26:26,939   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2026-02-12T07:26:26,940   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2026-02-12T07:26:26,941   In file included from /usr/include/c++/12/set:60,
2026-02-12T07:26:26,942                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/graph.h:13,
2026-02-12T07:26:26,946                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.h:17,
2026-02-12T07:26:26,956                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/nwchemjson.cpp:11:
2026-02-12T07:26:26,966   /usr/include/c++/12/bits/stl_tree.h: In member function ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’:
2026-02-12T07:26:26,967   /usr/include/c++/12/bits/stl_tree.h:2209:5: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2026-02-12T07:26:26,968    2209 |     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
2026-02-12T07:26:26,969         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:26:26,970   /usr/include/c++/12/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::nullptr_t}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’:
2026-02-12T07:26:26,971   /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2026-02-12T07:26:26,973    2457 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
2026-02-12T07:26:26,976         |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:26:26,977   In file included from /usr/include/c++/12/map:61,
2026-02-12T07:26:26,978                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/variantmap.h:13,
2026-02-12T07:26:26,979                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.h:19:
2026-02-12T07:26:26,979   In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::iterator std::map<_Key, _Tp, _Compare, _Alloc>::emplace_hint(const_iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::nullptr_t}; _Key = std::__cxx11::basic_string<char>; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’,
2026-02-12T07:26:26,980       inlined from ‘std::pair<typename std::_Rb_tree<_Key, std::pair<const _Key, _Val>, std::_Select1st<std::pair<const _Key, _Val> >, _Compare, typename __gnu_cxx::__alloc_traits<_Allocator>::rebind<std::pair<const _Key, _Val> >::other>::iterator, bool> std::map<_Key, _Tp, _Compare, _Alloc>::emplace(_Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::nullptr_t}; _Key = std::__cxx11::basic_string<char>; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’ at /usr/include/c++/12/bits/stl_map.h:599:22,
2026-02-12T07:26:26,981       inlined from ‘nlohmann::json_abi_v3_11_3::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType, CustomBaseClass>::value_type& nlohmann::json_abi_v3_11_3::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType, CustomBaseClass>::operator[](typename object_t::key_type) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_3::adl_serializer; BinaryType = std::vector<unsigned char>; CustomBaseClass = void]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/thirdparty/nlohmann/json.hpp:2132:57:
2026-02-12T07:26:26,982   /usr/include/c++/12/bits/stl_map.h:638:45: note: parameter passing for argument of type ‘std::map<std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<>, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’} changed in GCC 7.1
2026-02-12T07:26:26,983     638 |           return _M_t._M_emplace_hint_unique(__pos,
2026-02-12T07:26:26,984         |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
2026-02-12T07:26:26,985     639 |                                              std::forward<_Args>(__args)...);
2026-02-12T07:26:26,986         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:26:26,987   /usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’:
2026-02-12T07:26:26,996   /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2026-02-12T07:26:27,006    2457 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
2026-02-12T07:26:27,007         |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:26:27,008   In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’,
2026-02-12T07:26:27,009       inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::json_sax_dom_callback_parser<BasicJsonType>::key(string_t&) [with BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/thirdparty/nlohmann/detail/input/json_sax.hpp:441:83:
2026-02-12T07:26:27,010   /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2026-02-12T07:26:27,011     511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
2026-02-12T07:26:27,011         |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:26:27,012     512 |                                             std::tuple<const key_type&>(__k),
2026-02-12T07:26:27,013         |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:26:27,014     513 |                                             std::tuple<>());
2026-02-12T07:26:27,015         |                                             ~~~~~~~~~~~~~~~
2026-02-12T07:26:27,016   In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’,
2026-02-12T07:26:27,017       inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser<BasicJsonType>::key(string_t&) [with BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/thirdparty/nlohmann/detail/input/json_sax.hpp:246:79,
2026-02-12T07:26:27,018       inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::parser<BasicJsonType, InputAdapterType>::sax_parse_internal(SAX*) [with SAX = nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser<nlohmann::json_abi_v3_11_3::basic_json<> >; BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>; InputAdapterType = nlohmann::json_abi_v3_11_3::detail::input_stream_adapter]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/thirdparty/nlohmann/detail/input/parser.hpp:219:29:
2026-02-12T07:26:27,019   /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2026-02-12T07:26:27,020     511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
2026-02-12T07:26:27,021         |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:26:27,022     512 |                                             std::tuple<const key_type&>(__k),
2026-02-12T07:26:27,023         |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:26:27,024     513 |                                             std::tuple<>());
2026-02-12T07:26:27,025         |                                             ~~~~~~~~~~~~~~~
2026-02-12T07:26:27,026   In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’,
2026-02-12T07:26:27,036       inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser<BasicJsonType>::key(string_t&) [with BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/thirdparty/nlohmann/detail/input/json_sax.hpp:246:79,
2026-02-12T07:26:27,046       inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::parser<BasicJsonType, InputAdapterType>::sax_parse_internal(SAX*) [with SAX = nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser<nlohmann::json_abi_v3_11_3::basic_json<> >; BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>; InputAdapterType = nlohmann::json_abi_v3_11_3::detail::input_stream_adapter]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/thirdparty/nlohmann/detail/input/parser.hpp:430:21:
2026-02-12T07:26:27,047   /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2026-02-12T07:26:27,048     511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
2026-02-12T07:26:27,049         |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:26:27,050     512 |                                             std::tuple<const key_type&>(__k),
2026-02-12T07:26:27,050         |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:26:27,051     513 |                                             std::tuple<>());
2026-02-12T07:26:27,053         |                                             ~~~~~~~~~~~~~~~
2026-02-12T07:26:27,054   In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:26:27,055       inlined from ‘void Avogadro::Core::Array<T>::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:179:19,
2026-02-12T07:26:27,056       inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.h:1186:27,
2026-02-12T07:26:27,057       inlined from ‘void Avogadro::Core::AtomTemplate<Molecule_T>::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/atom.h:304:32,
2026-02-12T07:26:27,058       inlined from ‘virtual bool Avogadro::QuantumIO::NWChemJson::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/nwchemjson.cpp:139:22:
2026-02-12T07:26:27,059   /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:26:27,059    1032 |           _M_fill_insert(end(), __new_size - size(), __x);
2026-02-12T07:26:27,060         |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:26:27,061   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:26:27,063       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:26:27,064       inlined from ‘virtual bool Avogadro::QuantumIO::NWChemJson::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/nwchemjson.cpp:247:29:
2026-02-12T07:26:27,065   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:26:27,076     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:26:27,086         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:26:27,087   In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:26:27,088       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2026-02-12T07:26:27,089       inlined from ‘virtual bool Avogadro::QuantumIO::NWChemJson::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/nwchemjson.cpp:249:30:
2026-02-12T07:26:27,090   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:26:27,091     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:26:27,091         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:26:27,092   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:26:27,093       inlined from ‘void Avogadro::Core::Array<T>::push_back(const ValueType&) [with T = double]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:252:22,
2026-02-12T07:26:27,094       inlined from ‘virtual bool Avogadro::QuantumIO::NWChemJson::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/nwchemjson.cpp:280:30:
2026-02-12T07:26:27,096   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:26:27,098    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:26:27,099         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:26:27,100   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:26:27,101       inlined from ‘void Avogadro::Core::Array<T>::push_back(const ValueType&) [with T = double]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:252:22,
2026-02-12T07:26:27,102       inlined from ‘virtual bool Avogadro::QuantumIO::NWChemJson::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/nwchemjson.cpp:282:30:
2026-02-12T07:26:27,103   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:26:27,103    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:26:27,104         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:26:39,989   [71/86] Building CXX object python/CMakeFiles/avogadroiopython.dir/io.cpp.o
2026-02-12T07:26:44,236   [72/86] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/qcschema.cpp.o
2026-02-12T07:26:44,237   In file included from /usr/include/c++/12/vector:70,
2026-02-12T07:26:44,239                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/fileformat.h:15,
2026-02-12T07:26:44,241                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/qcschema.h:10,
2026-02-12T07:26:44,242                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/qcschema.cpp:6:
2026-02-12T07:26:44,243   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’:
2026-02-12T07:26:44,245   /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator’ changed in GCC 7.1
2026-02-12T07:26:44,246     523 |     vector<_Tp, _Alloc>::
2026-02-12T07:26:44,247         |     ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:26:44,248   In file included from /usr/include/c++/12/vector:64:
2026-02-12T07:26:44,249   In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:26:44,250       inlined from ‘void Avogadro::Core::Array<T>::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:179:19:
2026-02-12T07:26:44,251   /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:26:44,252    1032 |           _M_fill_insert(end(), __new_size - size(), __x);
2026-02-12T07:26:44,254         |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:26:44,255   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
2026-02-12T07:26:44,256   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2026-02-12T07:26:44,257     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:26:44,258         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:26:44,266   /usr/include/c++/12/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
2026-02-12T07:26:44,276   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:26:44,277     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2026-02-12T07:26:44,278         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:26:44,279   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Eigen::Matrix<double, 3, 1, 0, 3, 1>&}; _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’:
2026-02-12T07:26:44,280   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator’ changed in GCC 7.1
2026-02-12T07:26:44,281     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:26:44,282         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:26:44,284   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:26:44,285       inlined from ‘void Avogadro::Core::Array<T>::push_back(const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:252:22:
2026-02-12T07:26:44,286   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:26:44,287    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:26:44,296         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:26:44,306   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2026-02-12T07:26:44,307   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2026-02-12T07:26:44,308     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:26:44,309         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:26:44,310   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:26:44,311       inlined from ‘void Avogadro::Core::Array<T>::push_back(const ValueType&) [with T = double]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:252:22:
2026-02-12T07:26:44,312   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:26:44,313    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:26:44,314         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:26:44,315   In file included from /usr/include/c++/12/map:60,
2026-02-12T07:26:44,316                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/io/fileformatmanager.h:13,
2026-02-12T07:26:44,318                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/qcschema.cpp:9:
2026-02-12T07:26:44,319   /usr/include/c++/12/bits/stl_tree.h: In member function ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’:
2026-02-12T07:26:44,320   /usr/include/c++/12/bits/stl_tree.h:2209:5: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2026-02-12T07:26:44,321    2209 |     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
2026-02-12T07:26:44,322         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:26:44,324   /usr/include/c++/12/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::nullptr_t}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’:
2026-02-12T07:26:44,325   /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2026-02-12T07:26:44,326    2457 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
2026-02-12T07:26:44,336         |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:26:44,346   In file included from /usr/include/c++/12/map:61:
2026-02-12T07:26:44,347   In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::iterator std::map<_Key, _Tp, _Compare, _Alloc>::emplace_hint(const_iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::nullptr_t}; _Key = std::__cxx11::basic_string<char>; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’,
2026-02-12T07:26:44,347       inlined from ‘std::pair<typename std::_Rb_tree<_Key, std::pair<const _Key, _Tp>, std::_Select1st<std::pair<const _Key, _Tp> >, _Compare, typename __gnu_cxx::__alloc_traits<_Allocator>::rebind<std::pair<const _Key, _Tp> >::other>::iterator, bool> std::map<_Key, _Tp, _Compare, _Alloc>::emplace(_Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::nullptr_t}; _Key = std::__cxx11::basic_string<char>; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’ at /usr/include/c++/12/bits/stl_map.h:599:22,
2026-02-12T07:26:44,348       inlined from ‘nlohmann::json_abi_v3_11_3::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType, CustomBaseClass>::value_type& nlohmann::json_abi_v3_11_3::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType, CustomBaseClass>::operator[](typename object_t::key_type) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_3::adl_serializer; BinaryType = std::vector<unsigned char, std::allocator<unsigned char> >; CustomBaseClass = void]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/thirdparty/nlohmann/json.hpp:2132:57:
2026-02-12T07:26:44,349   /usr/include/c++/12/bits/stl_map.h:638:45: note: parameter passing for argument of type ‘std::map<std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<>, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’} changed in GCC 7.1
2026-02-12T07:26:44,350     638 |           return _M_t._M_emplace_hint_unique(__pos,
2026-02-12T07:26:44,351         |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
2026-02-12T07:26:44,352     639 |                                              std::forward<_Args>(__args)...);
2026-02-12T07:26:44,353         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:26:44,354   /usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’:
2026-02-12T07:26:44,354   /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2026-02-12T07:26:44,355    2457 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
2026-02-12T07:26:44,356         |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:26:44,357   In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’,
2026-02-12T07:26:44,358       inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::json_sax_dom_callback_parser<BasicJsonType>::key(string_t&) [with BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/thirdparty/nlohmann/detail/input/json_sax.hpp:441:83:
2026-02-12T07:26:44,359   /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2026-02-12T07:26:44,360     511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
2026-02-12T07:26:44,361         |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:26:44,362     512 |                                             std::tuple<const key_type&>(__k),
2026-02-12T07:26:44,363         |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:26:44,364     513 |                                             std::tuple<>());
2026-02-12T07:26:44,365         |                                             ~~~~~~~~~~~~~~~
2026-02-12T07:26:44,367   In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’,
2026-02-12T07:26:44,376       inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser<BasicJsonType>::key(string_t&) [with BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/thirdparty/nlohmann/detail/input/json_sax.hpp:246:79,
2026-02-12T07:26:44,386       inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::parser<BasicJsonType, InputAdapterType>::sax_parse_internal(SAX*) [with SAX = nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser<nlohmann::json_abi_v3_11_3::basic_json<> >; BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>; InputAdapterType = nlohmann::json_abi_v3_11_3::detail::input_stream_adapter]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/thirdparty/nlohmann/detail/input/parser.hpp:219:29:
2026-02-12T07:26:44,387   /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2026-02-12T07:26:44,387     511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
2026-02-12T07:26:44,388         |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:26:44,389     512 |                                             std::tuple<const key_type&>(__k),
2026-02-12T07:26:44,390         |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:26:44,391     513 |                                             std::tuple<>());
2026-02-12T07:26:44,392         |                                             ~~~~~~~~~~~~~~~
2026-02-12T07:26:44,393   In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >]’,
2026-02-12T07:26:44,394       inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser<BasicJsonType>::key(string_t&) [with BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/thirdparty/nlohmann/detail/input/json_sax.hpp:246:79,
2026-02-12T07:26:44,396       inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::parser<BasicJsonType, InputAdapterType>::sax_parse_internal(SAX*) [with SAX = nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser<nlohmann::json_abi_v3_11_3::basic_json<> >; BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>; InputAdapterType = nlohmann::json_abi_v3_11_3::detail::input_stream_adapter]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/thirdparty/nlohmann/detail/input/parser.hpp:430:21:
2026-02-12T07:26:44,397   /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1
2026-02-12T07:26:44,398     511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
2026-02-12T07:26:44,399         |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:26:44,400     512 |                                             std::tuple<const key_type&>(__k),
2026-02-12T07:26:44,400         |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:26:44,401     513 |                                             std::tuple<>());
2026-02-12T07:26:44,402         |                                             ~~~~~~~~~~~~~~~
2026-02-12T07:26:44,402   In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:26:44,403       inlined from ‘void Avogadro::Core::Array<T>::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:179:19,
2026-02-12T07:26:44,404       inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/molecule.h:1186:27,
2026-02-12T07:26:44,405       inlined from ‘void Avogadro::Core::AtomTemplate<Molecule_T>::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/atom.h:304:32,
2026-02-12T07:26:44,406       inlined from ‘virtual bool Avogadro::QuantumIO::QCSchema::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/qcschema.cpp:130:20:
2026-02-12T07:26:44,407   /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >’ changed in GCC 7.1
2026-02-12T07:26:44,408    1032 |           _M_fill_insert(end(), __new_size - size(), __x);
2026-02-12T07:26:44,409         |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:26:56,575   [73/86] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/orca.cpp.o
2026-02-12T07:26:56,577   In file included from /usr/include/c++/12/vector:70,
2026-02-12T07:26:56,578                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:12,
2026-02-12T07:26:56,579                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/orca.h:10,
2026-02-12T07:26:56,580                    from /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/orca.cpp:6:
2026-02-12T07:26:56,581   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2026-02-12T07:26:56,582   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2026-02-12T07:26:56,582     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:26:56,583         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:26:56,584   In file included from /usr/include/c++/12/vector:64:
2026-02-12T07:26:56,585   /usr/include/c++/12/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’:
2026-02-12T07:26:56,587   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:26:56,588    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:26:56,589         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:26:56,590   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:26:56,591       inlined from ‘void Avogadro::Core::Array<T>::push_back(const ValueType&) [with T = double]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:252:22:
2026-02-12T07:26:56,592   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:26:56,592    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:26:56,593         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:26:56,594   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:26:56,595       inlined from ‘void Avogadro::Core::Array<T>::push_back(const ValueType&) [with T = double]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:252:22,
2026-02-12T07:26:56,596       inlined from ‘void Avogadro::QuantumIO::ORCAOutput::parseMCD()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/orca.cpp:1227:36:
2026-02-12T07:26:56,597   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:26:56,598    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:26:56,599         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:26:56,600   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:26:56,601       inlined from ‘void Avogadro::Core::Array<T>::push_back(const ValueType&) [with T = double]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:252:22,
2026-02-12T07:26:56,602       inlined from ‘void Avogadro::QuantumIO::ORCAOutput::parseMCD()’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/orca.cpp:1228:27:
2026-02-12T07:26:56,603   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:26:56,604    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:26:56,605         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:26:56,606   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Eigen::Matrix<double, 3, 1, 0, 3, 1>&}; _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’:
2026-02-12T07:26:56,608   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<Eigen::Matrix<double, 3, 1> >::iterator’ changed in GCC 7.1
2026-02-12T07:26:56,609     439 |       vector<_Tp, _Alloc>::
2026-02-12T07:26:56,609         |       ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:26:56,610   /usr/include/c++/12/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’:
2026-02-12T07:26:56,611   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1> > >’ changed in GCC 7.1
2026-02-12T07:26:56,612    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:26:56,613         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:26:56,619   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:26:56,620       inlined from ‘void Avogadro::Core::Array<T>::push_back(const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:252:22:
2026-02-12T07:26:56,621   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1> > >’ changed in GCC 7.1
2026-02-12T07:26:56,622    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:26:56,622         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:26:56,623   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’:
2026-02-12T07:26:56,624   /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector<Eigen::Matrix<double, 3, 1> >::iterator’ changed in GCC 7.1
2026-02-12T07:26:56,625     523 |     vector<_Tp, _Alloc>::
2026-02-12T07:26:56,625         |     ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:26:56,627   In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:26:56,628       inlined from ‘void Avogadro::Core::Array<T>::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:179:19:
2026-02-12T07:26:56,629   /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1> > >’ changed in GCC 7.1
2026-02-12T07:26:56,630    1032 |           _M_fill_insert(end(), __new_size - size(), __x);
2026-02-12T07:26:56,631         |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:26:56,631   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’:
2026-02-12T07:26:56,632   /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2026-02-12T07:26:56,633     523 |     vector<_Tp, _Alloc>::
2026-02-12T07:26:56,634         |     ^~~~~~~~~~~~~~~~~~~
2026-02-12T07:26:56,636   In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:26:56,637       inlined from ‘void Avogadro::Core::Array<T>::resize(const std::size_t&, const ValueType&) [with T = double]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:179:19:
2026-02-12T07:26:56,638   /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:26:56,638    1032 |           _M_fill_insert(end(), __new_size - size(), __x);
2026-02-12T07:26:56,639         |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-02-12T07:26:56,640   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2026-02-12T07:26:56,641       inlined from ‘void Avogadro::QuantumIO::ORCAOutput::processLine(std::istream&, Avogadro::Core::GaussianSet*)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/orca.cpp:254:25:
2026-02-12T07:26:56,642   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2026-02-12T07:26:56,643    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:26:56,644         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:26:56,645   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]’,
2026-02-12T07:26:56,646       inlined from ‘void Avogadro::Core::Array<T>::push_back(const ValueType&) [with T = Eigen::Matrix<double, 3, 1>]’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/core/array.h:252:22,
2026-02-12T07:26:56,647       inlined from ‘virtual bool Avogadro::QuantumIO::ORCAOutput::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/avogadro/quantumio/orca.cpp:75:28:
2026-02-12T07:26:56,647   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1> > >’ changed in GCC 7.1
2026-02-12T07:26:56,648    1287 |           _M_realloc_insert(end(), __x);
2026-02-12T07:26:56,649         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2026-02-12T07:27:12,544   [74/86] Building CXX object python/CMakeFiles/avogadrocorepython.dir/core.cpp.o
2026-02-12T07:28:54,299   [75/86] Building CXX object avogadro/core/CMakeFiles/Core.dir/residue.cpp.o
2026-02-12T07:28:55,003   [76/86] Linking CXX shared library lib/libAvogadroCore.so.1.103.0
2026-02-12T07:28:55,113   [77/86] Creating library symlink lib/libAvogadroCore.so.1 lib/libAvogadroCore.so
2026-02-12T07:28:55,997   [78/86] Linking CXX shared library lib/libAvogadroCalc.so.1.103.0
2026-02-12T07:28:56,130   [79/86] Creating library symlink lib/libAvogadroCalc.so.1 lib/libAvogadroCalc.so
2026-02-12T07:28:56,362   [80/86] Linking CXX shared library lib/libAvogadroIO.so.1.103.0
2026-02-12T07:28:56,500   [81/86] Creating library symlink lib/libAvogadroIO.so.1 lib/libAvogadroIO.so
2026-02-12T07:28:57,568   [82/86] Linking CXX shared library lib/libAvogadroQuantumIO.so.1.103.0
2026-02-12T07:28:57,702   [83/86] Creating library symlink lib/libAvogadroQuantumIO.so.1 lib/libAvogadroQuantumIO.so
2026-02-12T07:29:17,000   [84/86] Linking CXX shared module lib/avogadro/io.cpython-311-arm-linux-gnueabihf.so
2026-02-12T07:29:18,267   [85/86] Linking CXX shared module lib/avogadro/core.cpython-311-arm-linux-gnueabihf.so
2026-02-12T07:29:18,267   [85/86] Install the project...
2026-02-12T07:29:18,397   -- Install configuration: "Release"
2026-02-12T07:29:18,410   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/angletools.h
2026-02-12T07:29:18,414   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/angleiterator.h
2026-02-12T07:29:18,416   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/array.h
2026-02-12T07:29:18,420   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/avogadrocore.h
2026-02-12T07:29:18,423   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/color3f.h
2026-02-12T07:29:18,426   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/constraint.h
2026-02-12T07:29:18,430   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/contrastcolor.h
2026-02-12T07:29:18,433   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/coordinateset.h
2026-02-12T07:29:18,436   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/matrix.h
2026-02-12T07:29:18,439   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/types.h
2026-02-12T07:29:18,442   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/utilities.h
2026-02-12T07:29:18,446   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/vector.h
2026-02-12T07:29:18,451   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroCore.so.1.103.0
2026-02-12T07:29:18,481   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroCore.so.1
2026-02-12T07:29:18,484   -- Set runtime path of "/tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroCore.so.1.103.0" to "/tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/avogadro"
2026-02-12T07:29:18,485   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroCore.so
2026-02-12T07:29:18,486   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/atom.h
2026-02-12T07:29:18,490   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/atomtyper.h
2026-02-12T07:29:18,493   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/atomtyper-inline.h
2026-02-12T07:29:18,496   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/atomutilities.h
2026-02-12T07:29:18,498   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/basisset.h
2026-02-12T07:29:18,502   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/bond.h
2026-02-12T07:29:18,506   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/coordinateblockgenerator.h
2026-02-12T07:29:18,511   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/crystaltools.h
2026-02-12T07:29:18,518   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/cube.h
2026-02-12T07:29:18,525   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/dihedraliterator.h
2026-02-12T07:29:18,530   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/elements.h
2026-02-12T07:29:18,536   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/gaussianset.h
2026-02-12T07:29:18,540   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/gaussiansettools.h
2026-02-12T07:29:18,543   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/graph.h
2026-02-12T07:29:18,547   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/internalcoordinates.h
2026-02-12T07:29:18,550   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/layer.h
2026-02-12T07:29:18,553   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/layermanager.h
2026-02-12T07:29:18,556   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/mesh.h
2026-02-12T07:29:18,559   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/molecule.h
2026-02-12T07:29:18,563   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/mutex.h
2026-02-12T07:29:18,566   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/nameatomtyper.h
2026-02-12T07:29:18,569   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/neighborperceiver.h
2026-02-12T07:29:18,572   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/residue.h
2026-02-12T07:29:18,575   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/ringperceiver.h
2026-02-12T07:29:18,578   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/secondarystructure.h
2026-02-12T07:29:18,581   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/slaterset.h
2026-02-12T07:29:18,584   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/slatersettools.h
2026-02-12T07:29:18,588   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/spacegroups.h
2026-02-12T07:29:18,591   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/symbolatomtyper.h
2026-02-12T07:29:18,595   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/unitcell.h
2026-02-12T07:29:18,598   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/variant.h
2026-02-12T07:29:18,602   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/variant-inline.h
2026-02-12T07:29:18,605   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/variantmap.h
2026-02-12T07:29:18,609   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/version.h
2026-02-12T07:29:18,612   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/sharedmutex.h
2026-02-12T07:29:18,616   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/avogadrocoreexport.h
2026-02-12T07:29:18,621   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroCalc.so.1.103.0
2026-02-12T07:29:18,628   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroCalc.so.1
2026-02-12T07:29:18,630   -- Set runtime path of "/tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroCalc.so.1.103.0" to "/tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/avogadro"
2026-02-12T07:29:18,632   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroCalc.so
2026-02-12T07:29:18,635   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/calc/chargemodel.h
2026-02-12T07:29:18,639   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/calc/chargemanager.h
2026-02-12T07:29:18,643   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/calc/defaultmodel.h
2026-02-12T07:29:18,646   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/calc/energycalculator.h
2026-02-12T07:29:18,649   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/calc/energymanager.h
2026-02-12T07:29:18,653   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/calc/gradients.h
2026-02-12T07:29:18,657   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/calc/lennardjones.h
2026-02-12T07:29:18,660   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/calc/uff.h
2026-02-12T07:29:18,664   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/calc/uffdata.h
2026-02-12T07:29:18,667   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/calc/avogadrocalcexport.h
2026-02-12T07:29:18,672   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroIO.so.1.103.0
2026-02-12T07:29:18,695   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroIO.so.1
2026-02-12T07:29:18,698   -- Set runtime path of "/tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroIO.so.1.103.0" to "/tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/avogadro"
2026-02-12T07:29:18,700   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroIO.so
2026-02-12T07:29:18,703   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/cjsonformat.h
2026-02-12T07:29:18,707   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/cmlformat.h
2026-02-12T07:29:18,710   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/cmsgpackformat.h
2026-02-12T07:29:18,713   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/dcdformat.h
2026-02-12T07:29:18,716   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/fileformat.h
2026-02-12T07:29:18,719   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/fileformatmanager.h
2026-02-12T07:29:18,723   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/gromacsformat.h
2026-02-12T07:29:18,725   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/mdlformat.h
2026-02-12T07:29:18,728   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/lammpsformat.h
2026-02-12T07:29:18,731   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/pdbformat.h
2026-02-12T07:29:18,734   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/sdfformat.h
2026-02-12T07:29:18,737   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/trrformat.h
2026-02-12T07:29:18,741   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/turbomoleformat.h
2026-02-12T07:29:18,744   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/vaspformat.h
2026-02-12T07:29:18,747   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/xyzformat.h
2026-02-12T07:29:18,751   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/avogadroioexport.h
2026-02-12T07:29:18,756   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroQuantumIO.so.1.103.0
2026-02-12T07:29:18,773   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroQuantumIO.so.1
2026-02-12T07:29:18,776   -- Set runtime path of "/tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroQuantumIO.so.1.103.0" to "/tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/avogadro"
2026-02-12T07:29:18,777   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroQuantumIO.so
2026-02-12T07:29:18,780   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/gamessus.h
2026-02-12T07:29:18,784   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/gaussianfchk.h
2026-02-12T07:29:18,787   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/gaussiancube.h
2026-02-12T07:29:18,790   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/genericjson.h
2026-02-12T07:29:18,793   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/genericoutput.h
2026-02-12T07:29:18,796   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/molden.h
2026-02-12T07:29:18,799   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/mopacaux.h
2026-02-12T07:29:18,802   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/nwchemjson.h
2026-02-12T07:29:18,805   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/nwchemlog.h
2026-02-12T07:29:18,808   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/orca.h
2026-02-12T07:29:18,810   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/qcschema.h
2026-02-12T07:29:18,813   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/avogadroquantumioexport.h
2026-02-12T07:29:18,818   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/avogadro/core.cpython-311-arm-linux-gnueabihf.so
2026-02-12T07:29:18,829   -- Set runtime path of "/tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/avogadro/core.cpython-311-arm-linux-gnueabihf.so" to "$ORIGIN"
2026-02-12T07:29:18,830   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/avogadro/io.cpython-311-arm-linux-gnueabihf.so
2026-02-12T07:29:18,840   -- Set runtime path of "/tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/avogadro/io.cpython-311-arm-linux-gnueabihf.so" to "$ORIGIN"
2026-02-12T07:29:18,841   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/avogadro/__init__.py
2026-02-12T07:29:18,845   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/avogadro/cjson.py
2026-02-12T07:29:18,848   -- Installing: /tmp/pip-wheel-wpbp_tmk/avogadro_b1d19a1ead7142659c1fb7fe94d7712a/_skbuild/linux-armv7l-3.11/cmake-install/avogadro/connect.py


2026-02-12T07:29:18,974   toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section
2026-02-12T07:29:19,031   toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section
2026-02-12T07:29:19,038   running bdist_wheel
2026-02-12T07:29:19,050   running build
2026-02-12T07:29:19,051   running build_py
2026-02-12T07:29:19,053   creating _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro
2026-02-12T07:29:19,056   copying _skbuild/linux-armv7l-3.11/cmake-install/avogadro/__init__.py -> _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro
2026-02-12T07:29:19,058   copying _skbuild/linux-armv7l-3.11/cmake-install/avogadro/cjson.py -> _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro
2026-02-12T07:29:19,060   copying _skbuild/linux-armv7l-3.11/cmake-install/avogadro/connect.py -> _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro
2026-02-12T07:29:19,067   copying _skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroCore.so.1.103.0 -> _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro
2026-02-12T07:29:19,103   copying _skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroCore.so.1 -> _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro
2026-02-12T07:29:19,126   copying _skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroCore.so -> _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro
2026-02-12T07:29:19,158   copying _skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroCalc.so.1.103.0 -> _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro
2026-02-12T07:29:19,165   copying _skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroCalc.so.1 -> _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro
2026-02-12T07:29:19,172   copying _skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroCalc.so -> _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro
2026-02-12T07:29:19,182   copying _skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroIO.so.1.103.0 -> _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro
2026-02-12T07:29:19,215   copying _skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroIO.so.1 -> _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro
2026-02-12T07:29:19,245   copying _skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroIO.so -> _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro
2026-02-12T07:29:19,275   copying _skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroQuantumIO.so.1.103.0 -> _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro
2026-02-12T07:29:19,295   copying _skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroQuantumIO.so.1 -> _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro
2026-02-12T07:29:19,316   copying _skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroQuantumIO.so -> _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro
2026-02-12T07:29:19,449   copying _skbuild/linux-armv7l-3.11/cmake-install/avogadro/core.cpython-311-arm-linux-gnueabihf.so -> _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro
2026-02-12T07:29:19,458   copying _skbuild/linux-armv7l-3.11/cmake-install/avogadro/io.cpython-311-arm-linux-gnueabihf.so -> _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro
2026-02-12T07:29:19,467   copied 3 files
2026-02-12T07:29:19,468   running build_ext
2026-02-12T07:29:19,469   installing to _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel
2026-02-12T07:29:19,470   running install
2026-02-12T07:29:19,499   running install_lib
2026-02-12T07:29:19,501   creating _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel
2026-02-12T07:29:19,503   creating _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro
2026-02-12T07:29:19,505   copying _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro/libAvogadroIO.so -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/./avogadro
2026-02-12T07:29:19,535   copying _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro/core.cpython-311-arm-linux-gnueabihf.so -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/./avogadro
2026-02-12T07:29:19,544   copying _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro/__init__.py -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/./avogadro
2026-02-12T07:29:19,547   copying _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro/libAvogadroIO.so.1.103.0 -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/./avogadro
2026-02-12T07:29:19,578   copying _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro/libAvogadroCalc.so.1.103.0 -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/./avogadro
2026-02-12T07:29:19,586   copying _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro/libAvogadroCore.so -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/./avogadro
2026-02-12T07:29:19,622   copying _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro/libAvogadroCore.so.1 -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/./avogadro
2026-02-12T07:29:19,654   copying _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro/libAvogadroQuantumIO.so.1 -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/./avogadro
2026-02-12T07:29:19,673   copying _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro/libAvogadroQuantumIO.so.1.103.0 -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/./avogadro
2026-02-12T07:29:19,692   copying _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro/cjson.py -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/./avogadro
2026-02-12T07:29:19,695   copying _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro/connect.py -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/./avogadro
2026-02-12T07:29:19,697   copying _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro/libAvogadroQuantumIO.so -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/./avogadro
2026-02-12T07:29:19,716   copying _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro/io.cpython-311-arm-linux-gnueabihf.so -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/./avogadro
2026-02-12T07:29:19,723   copying _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro/libAvogadroCalc.so.1 -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/./avogadro
2026-02-12T07:29:19,730   copying _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro/libAvogadroCore.so.1.103.0 -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/./avogadro
2026-02-12T07:29:19,763   copying _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro/libAvogadroIO.so.1 -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/./avogadro
2026-02-12T07:29:19,795   copying _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro/libAvogadroCalc.so -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/./avogadro
2026-02-12T07:29:19,802   copied 17 files
2026-02-12T07:29:19,802   running install_data
2026-02-12T07:29:19,813   creating _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data
2026-02-12T07:29:19,816   creating _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,819   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/cube.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,823   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/version.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,826   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/array.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,830   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/coordinateblockgenerator.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,833   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/coordinateset.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,836   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/utilities.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,839   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/atom.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,843   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/atomutilities.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,845   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/secondarystructure.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,848   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/atomtyper.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,851   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/layer.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,854   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/gaussiansettools.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,857   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/dihedraliterator.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,860   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/molecule.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,864   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/avogadrocoreexport.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,868   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/vector.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,870   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/elements.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,874   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/sharedmutex.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,877   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/residue.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,880   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/neighborperceiver.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,882   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/symbolatomtyper.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,885   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/graph.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,888   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/unitcell.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,892   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/bond.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,895   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/variant-inline.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,898   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/spacegroups.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,901   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/nameatomtyper.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,904   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/avogadrocore.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,907   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/basisset.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,910   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/types.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,913   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/slatersettools.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,916   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/layermanager.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,919   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/mesh.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,922   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/mutex.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,926   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/variantmap.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,929   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/internalcoordinates.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,932   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/ringperceiver.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,935   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/angletools.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,938   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/angleiterator.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,941   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/color3f.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,944   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/slaterset.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,947   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/variant.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,950   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/contrastcolor.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,953   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/atomtyper-inline.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,956   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/gaussianset.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,960   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/matrix.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,963   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/constraint.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,966   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/crystaltools.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/core
2026-02-12T07:29:19,970   creating _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/calc
2026-02-12T07:29:19,971   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/calc/gradients.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/calc
2026-02-12T07:29:19,975   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/calc/energymanager.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/calc
2026-02-12T07:29:19,978   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/calc/chargemanager.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/calc
2026-02-12T07:29:19,981   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/calc/energycalculator.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/calc
2026-02-12T07:29:19,985   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/calc/chargemodel.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/calc
2026-02-12T07:29:19,988   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/calc/uff.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/calc
2026-02-12T07:29:19,991   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/calc/lennardjones.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/calc
2026-02-12T07:29:19,994   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/calc/avogadrocalcexport.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/calc
2026-02-12T07:29:19,997   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/calc/uffdata.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/calc
2026-02-12T07:29:20,001   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/calc/defaultmodel.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/calc
2026-02-12T07:29:20,004   creating _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/io
2026-02-12T07:29:20,006   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/cmlformat.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/io
2026-02-12T07:29:20,009   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/sdfformat.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/io
2026-02-12T07:29:20,012   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/fileformat.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/io
2026-02-12T07:29:20,017   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/gromacsformat.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/io
2026-02-12T07:29:20,020   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/mdlformat.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/io
2026-02-12T07:29:20,023   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/vaspformat.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/io
2026-02-12T07:29:20,030   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/trrformat.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/io
2026-02-12T07:29:20,032   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/cjsonformat.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/io
2026-02-12T07:29:20,036   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/dcdformat.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/io
2026-02-12T07:29:20,039   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/cmsgpackformat.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/io
2026-02-12T07:29:20,041   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/avogadroioexport.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/io
2026-02-12T07:29:20,044   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/xyzformat.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/io
2026-02-12T07:29:20,047   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/pdbformat.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/io
2026-02-12T07:29:20,050   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/fileformatmanager.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/io
2026-02-12T07:29:20,053   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/lammpsformat.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/io
2026-02-12T07:29:20,056   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/turbomoleformat.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/io
2026-02-12T07:29:20,060   creating _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/quantumio
2026-02-12T07:29:20,061   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/gaussiancube.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/quantumio
2026-02-12T07:29:20,065   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/molden.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/quantumio
2026-02-12T07:29:20,068   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/gaussianfchk.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/quantumio
2026-02-12T07:29:20,070   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/nwchemjson.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/quantumio
2026-02-12T07:29:20,073   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/nwchemlog.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/quantumio
2026-02-12T07:29:20,076   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/genericjson.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/quantumio
2026-02-12T07:29:20,079   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/qcschema.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/quantumio
2026-02-12T07:29:20,082   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/orca.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/quantumio
2026-02-12T07:29:20,084   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/avogadroquantumioexport.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/quantumio
2026-02-12T07:29:20,087   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/mopacaux.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/quantumio
2026-02-12T07:29:20,090   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/genericoutput.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/quantumio
2026-02-12T07:29:20,092   copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/gamessus.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.data/data/include/avogadro/quantumio
2026-02-12T07:29:20,095   running install_egg_info
2026-02-12T07:29:20,117   running egg_info
2026-02-12T07:29:20,129   writing avogadro.egg-info/PKG-INFO
2026-02-12T07:29:20,135   writing dependency_links to avogadro.egg-info/dependency_links.txt
2026-02-12T07:29:20,138   writing top-level names to avogadro.egg-info/top_level.txt
2026-02-12T07:29:20,201   listing git files failed - pretending there aren't any
2026-02-12T07:29:20,209   reading manifest file 'avogadro.egg-info/SOURCES.txt'
2026-02-12T07:29:21,139   adding license file 'LICENSE'
2026-02-12T07:29:21,228   writing manifest file 'avogadro.egg-info/SOURCES.txt'
2026-02-12T07:29:21,249   Copying avogadro.egg-info to _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/./avogadro-1.103.0-py3.11.egg-info
2026-02-12T07:29:21,266   running install_scripts
2026-02-12T07:29:21,267   copied 0 files
2026-02-12T07:29:21,325   creating _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.103.0.dist-info/WHEEL
2026-02-12T07:29:21,330   creating '/tmp/pip-wheel-dq7nx4t_/.tmp-c2b_cnj9/avogadro-1.103.0-cp311-cp311-linux_armv7l.whl' and adding '_skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel' to it
2026-02-12T07:29:21,333   adding 'avogadro/__init__.py'
2026-02-12T07:29:21,334   adding 'avogadro/cjson.py'
2026-02-12T07:29:21,336   adding 'avogadro/connect.py'
2026-02-12T07:29:21,392   adding 'avogadro/core.cpython-311-arm-linux-gnueabihf.so'
2026-02-12T07:29:21,431   adding 'avogadro/io.cpython-311-arm-linux-gnueabihf.so'
2026-02-12T07:29:21,464   adding 'avogadro/libAvogadroCalc.so'
2026-02-12T07:29:21,497   adding 'avogadro/libAvogadroCalc.so.1'
2026-02-12T07:29:21,530   adding 'avogadro/libAvogadroCalc.so.1.103.0'
2026-02-12T07:29:21,828   adding 'avogadro/libAvogadroCore.so'
2026-02-12T07:29:22,130   adding 'avogadro/libAvogadroCore.so.1'
2026-02-12T07:29:22,362   adding 'avogadro/libAvogadroCore.so.1.103.0'
2026-02-12T07:29:22,652   adding 'avogadro/libAvogadroIO.so'
2026-02-12T07:29:22,997   adding 'avogadro/libAvogadroIO.so.1'
2026-02-12T07:29:23,254   adding 'avogadro/libAvogadroIO.so.1.103.0'
2026-02-12T07:29:23,386   adding 'avogadro/libAvogadroQuantumIO.so'
2026-02-12T07:29:23,526   adding 'avogadro/libAvogadroQuantumIO.so.1'
2026-02-12T07:29:23,756   adding 'avogadro/libAvogadroQuantumIO.so.1.103.0'
2026-02-12T07:29:23,765   adding 'avogadro-1.103.0.data/data/include/avogadro/calc/avogadrocalcexport.h'
2026-02-12T07:29:23,767   adding 'avogadro-1.103.0.data/data/include/avogadro/calc/chargemanager.h'
2026-02-12T07:29:23,777   adding 'avogadro-1.103.0.data/data/include/avogadro/calc/chargemodel.h'
2026-02-12T07:29:23,779   adding 'avogadro-1.103.0.data/data/include/avogadro/calc/defaultmodel.h'
2026-02-12T07:29:23,781   adding 'avogadro-1.103.0.data/data/include/avogadro/calc/energycalculator.h'
2026-02-12T07:29:23,783   adding 'avogadro-1.103.0.data/data/include/avogadro/calc/energymanager.h'
2026-02-12T07:29:23,785   adding 'avogadro-1.103.0.data/data/include/avogadro/calc/gradients.h'
2026-02-12T07:29:23,797   adding 'avogadro-1.103.0.data/data/include/avogadro/calc/lennardjones.h'
2026-02-12T07:29:23,799   adding 'avogadro-1.103.0.data/data/include/avogadro/calc/uff.h'
2026-02-12T07:29:23,802   adding 'avogadro-1.103.0.data/data/include/avogadro/calc/uffdata.h'
2026-02-12T07:29:23,805   adding 'avogadro-1.103.0.data/data/include/avogadro/core/angleiterator.h'
2026-02-12T07:29:23,817   adding 'avogadro-1.103.0.data/data/include/avogadro/core/angletools.h'
2026-02-12T07:29:23,820   adding 'avogadro-1.103.0.data/data/include/avogadro/core/array.h'
2026-02-12T07:29:23,822   adding 'avogadro-1.103.0.data/data/include/avogadro/core/atom.h'
2026-02-12T07:29:23,824   adding 'avogadro-1.103.0.data/data/include/avogadro/core/atomtyper-inline.h'
2026-02-12T07:29:23,826   adding 'avogadro-1.103.0.data/data/include/avogadro/core/atomtyper.h'
2026-02-12T07:29:23,837   adding 'avogadro-1.103.0.data/data/include/avogadro/core/atomutilities.h'
2026-02-12T07:29:23,839   adding 'avogadro-1.103.0.data/data/include/avogadro/core/avogadrocore.h'
2026-02-12T07:29:23,841   adding 'avogadro-1.103.0.data/data/include/avogadro/core/avogadrocoreexport.h'
2026-02-12T07:29:23,843   adding 'avogadro-1.103.0.data/data/include/avogadro/core/basisset.h'
2026-02-12T07:29:23,845   adding 'avogadro-1.103.0.data/data/include/avogadro/core/bond.h'
2026-02-12T07:29:23,857   adding 'avogadro-1.103.0.data/data/include/avogadro/core/color3f.h'
2026-02-12T07:29:23,859   adding 'avogadro-1.103.0.data/data/include/avogadro/core/constraint.h'
2026-02-12T07:29:23,861   adding 'avogadro-1.103.0.data/data/include/avogadro/core/contrastcolor.h'
2026-02-12T07:29:23,863   adding 'avogadro-1.103.0.data/data/include/avogadro/core/coordinateblockgenerator.h'
2026-02-12T07:29:23,865   adding 'avogadro-1.103.0.data/data/include/avogadro/core/coordinateset.h'
2026-02-12T07:29:23,868   adding 'avogadro-1.103.0.data/data/include/avogadro/core/crystaltools.h'
2026-02-12T07:29:23,887   adding 'avogadro-1.103.0.data/data/include/avogadro/core/cube.h'
2026-02-12T07:29:23,888   adding 'avogadro-1.103.0.data/data/include/avogadro/core/dihedraliterator.h'
2026-02-12T07:29:23,890   adding 'avogadro-1.103.0.data/data/include/avogadro/core/elements.h'
2026-02-12T07:29:23,893   adding 'avogadro-1.103.0.data/data/include/avogadro/core/gaussianset.h'
2026-02-12T07:29:23,894   adding 'avogadro-1.103.0.data/data/include/avogadro/core/gaussiansettools.h'
2026-02-12T07:29:23,896   adding 'avogadro-1.103.0.data/data/include/avogadro/core/graph.h'
2026-02-12T07:29:23,898   adding 'avogadro-1.103.0.data/data/include/avogadro/core/internalcoordinates.h'
2026-02-12T07:29:23,900   adding 'avogadro-1.103.0.data/data/include/avogadro/core/layer.h'
2026-02-12T07:29:23,901   adding 'avogadro-1.103.0.data/data/include/avogadro/core/layermanager.h'
2026-02-12T07:29:23,903   adding 'avogadro-1.103.0.data/data/include/avogadro/core/matrix.h'
2026-02-12T07:29:23,905   adding 'avogadro-1.103.0.data/data/include/avogadro/core/mesh.h'
2026-02-12T07:29:23,910   adding 'avogadro-1.103.0.data/data/include/avogadro/core/molecule.h'
2026-02-12T07:29:23,912   adding 'avogadro-1.103.0.data/data/include/avogadro/core/mutex.h'
2026-02-12T07:29:23,913   adding 'avogadro-1.103.0.data/data/include/avogadro/core/nameatomtyper.h'
2026-02-12T07:29:23,915   adding 'avogadro-1.103.0.data/data/include/avogadro/core/neighborperceiver.h'
2026-02-12T07:29:23,917   adding 'avogadro-1.103.0.data/data/include/avogadro/core/residue.h'
2026-02-12T07:29:23,918   adding 'avogadro-1.103.0.data/data/include/avogadro/core/ringperceiver.h'
2026-02-12T07:29:23,920   adding 'avogadro-1.103.0.data/data/include/avogadro/core/secondarystructure.h'
2026-02-12T07:29:23,921   adding 'avogadro-1.103.0.data/data/include/avogadro/core/sharedmutex.h'
2026-02-12T07:29:23,923   adding 'avogadro-1.103.0.data/data/include/avogadro/core/slaterset.h'
2026-02-12T07:29:23,925   adding 'avogadro-1.103.0.data/data/include/avogadro/core/slatersettools.h'
2026-02-12T07:29:23,926   adding 'avogadro-1.103.0.data/data/include/avogadro/core/spacegroups.h'
2026-02-12T07:29:23,928   adding 'avogadro-1.103.0.data/data/include/avogadro/core/symbolatomtyper.h'
2026-02-12T07:29:23,929   adding 'avogadro-1.103.0.data/data/include/avogadro/core/types.h'
2026-02-12T07:29:23,931   adding 'avogadro-1.103.0.data/data/include/avogadro/core/unitcell.h'
2026-02-12T07:29:23,933   adding 'avogadro-1.103.0.data/data/include/avogadro/core/utilities.h'
2026-02-12T07:29:23,936   adding 'avogadro-1.103.0.data/data/include/avogadro/core/variant-inline.h'
2026-02-12T07:29:23,938   adding 'avogadro-1.103.0.data/data/include/avogadro/core/variant.h'
2026-02-12T07:29:23,939   adding 'avogadro-1.103.0.data/data/include/avogadro/core/variantmap.h'
2026-02-12T07:29:23,941   adding 'avogadro-1.103.0.data/data/include/avogadro/core/vector.h'
2026-02-12T07:29:23,942   adding 'avogadro-1.103.0.data/data/include/avogadro/core/version.h'
2026-02-12T07:29:23,945   adding 'avogadro-1.103.0.data/data/include/avogadro/io/avogadroioexport.h'
2026-02-12T07:29:23,946   adding 'avogadro-1.103.0.data/data/include/avogadro/io/cjsonformat.h'
2026-02-12T07:29:23,948   adding 'avogadro-1.103.0.data/data/include/avogadro/io/cmlformat.h'
2026-02-12T07:29:23,950   adding 'avogadro-1.103.0.data/data/include/avogadro/io/cmsgpackformat.h'
2026-02-12T07:29:23,951   adding 'avogadro-1.103.0.data/data/include/avogadro/io/dcdformat.h'
2026-02-12T07:29:23,953   adding 'avogadro-1.103.0.data/data/include/avogadro/io/fileformat.h'
2026-02-12T07:29:23,956   adding 'avogadro-1.103.0.data/data/include/avogadro/io/fileformatmanager.h'
2026-02-12T07:29:23,957   adding 'avogadro-1.103.0.data/data/include/avogadro/io/gromacsformat.h'
2026-02-12T07:29:23,959   adding 'avogadro-1.103.0.data/data/include/avogadro/io/lammpsformat.h'
2026-02-12T07:29:23,961   adding 'avogadro-1.103.0.data/data/include/avogadro/io/mdlformat.h'
2026-02-12T07:29:23,962   adding 'avogadro-1.103.0.data/data/include/avogadro/io/pdbformat.h'
2026-02-12T07:29:23,964   adding 'avogadro-1.103.0.data/data/include/avogadro/io/sdfformat.h'
2026-02-12T07:29:23,966   adding 'avogadro-1.103.0.data/data/include/avogadro/io/trrformat.h'
2026-02-12T07:29:23,967   adding 'avogadro-1.103.0.data/data/include/avogadro/io/turbomoleformat.h'
2026-02-12T07:29:23,969   adding 'avogadro-1.103.0.data/data/include/avogadro/io/vaspformat.h'
2026-02-12T07:29:23,970   adding 'avogadro-1.103.0.data/data/include/avogadro/io/xyzformat.h'
2026-02-12T07:29:23,973   adding 'avogadro-1.103.0.data/data/include/avogadro/quantumio/avogadroquantumioexport.h'
2026-02-12T07:29:23,974   adding 'avogadro-1.103.0.data/data/include/avogadro/quantumio/gamessus.h'
2026-02-12T07:29:23,976   adding 'avogadro-1.103.0.data/data/include/avogadro/quantumio/gaussiancube.h'
2026-02-12T07:29:23,978   adding 'avogadro-1.103.0.data/data/include/avogadro/quantumio/gaussianfchk.h'
2026-02-12T07:29:23,980   adding 'avogadro-1.103.0.data/data/include/avogadro/quantumio/genericjson.h'
2026-02-12T07:29:23,981   adding 'avogadro-1.103.0.data/data/include/avogadro/quantumio/genericoutput.h'
2026-02-12T07:29:23,983   adding 'avogadro-1.103.0.data/data/include/avogadro/quantumio/molden.h'
2026-02-12T07:29:23,984   adding 'avogadro-1.103.0.data/data/include/avogadro/quantumio/mopacaux.h'
2026-02-12T07:29:23,986   adding 'avogadro-1.103.0.data/data/include/avogadro/quantumio/nwchemjson.h'
2026-02-12T07:29:23,988   adding 'avogadro-1.103.0.data/data/include/avogadro/quantumio/nwchemlog.h'
2026-02-12T07:29:23,989   adding 'avogadro-1.103.0.data/data/include/avogadro/quantumio/orca.h'
2026-02-12T07:29:23,991   adding 'avogadro-1.103.0.data/data/include/avogadro/quantumio/qcschema.h'
2026-02-12T07:29:23,994   adding 'avogadro-1.103.0.dist-info/licenses/LICENSE'
2026-02-12T07:29:23,996   adding 'avogadro-1.103.0.dist-info/METADATA'
2026-02-12T07:29:23,997   adding 'avogadro-1.103.0.dist-info/WHEEL'
2026-02-12T07:29:23,998   adding 'avogadro-1.103.0.dist-info/top_level.txt'
2026-02-12T07:29:24,001   adding 'avogadro-1.103.0.dist-info/RECORD'
2026-02-12T07:29:24,044   removing _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel
2026-02-12T07:29:24,227   Building wheel for avogadro (pyproject.toml): finished with status 'done'
2026-02-12T07:29:24,355   Created wheel for avogadro: filename=avogadro-1.103.0-cp311-cp311-linux_armv7l.whl size=3631325 sha256=724b87880d1254ea255ffd3c3f0cbc686f81ccb0e0739aa6e1987ea1b8d0e8cc
2026-02-12T07:29:24,357   Stored in directory: /tmp/pip-ephem-wheel-cache-wv9u2j6q/wheels/d9/ed/ab/fefc8c25ee2834113ecd75641d26b6444976ddfddcb3f2997e
2026-02-12T07:29:24,407 Successfully built avogadro
2026-02-12T07:29:24,530 Removed build tracker: '/tmp/pip-build-tracker-ujkcndwt'