2026-02-13T00:53:29,576 Created temporary directory: /tmp/pip-ephem-wheel-cache-tzwenq15 2026-02-13T00:53:29,578 Created temporary directory: /tmp/pip-build-tracker-zu3__kyp 2026-02-13T00:53:29,579 Initialized build tracking at /tmp/pip-build-tracker-zu3__kyp 2026-02-13T00:53:29,579 Created build tracker: /tmp/pip-build-tracker-zu3__kyp 2026-02-13T00:53:29,580 Entered build tracker: /tmp/pip-build-tracker-zu3__kyp 2026-02-13T00:53:29,581 Created temporary directory: /tmp/pip-wheel-ej1_6vuk 2026-02-13T00:53:29,583 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. 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https://files.pythonhosted.org/packages/7d/5d/c9de1cb42db2cef7b4301f748b1fa3eea7895a0d678af03f4824b15b0e5a/scipion_em_xmipp-26.0.2.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8), version: 26.0.2 2026-02-13T00:53:29,904 Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/a2/3c/37c20eb89b65e3203c1826aef488171041fe90bfccf121bfff036a682fc9/scipion_em_xmipp-26.1.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8) 2026-02-13T00:53:29,904 Found link https://files.pythonhosted.org/packages/1d/c0/922d6d59b584994412f93af6f2ec1fddd92e64735e77f0b73fc93d8d1704/scipion_em_xmipp-26.1.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8), version: 26.1.0 2026-02-13T00:53:29,905 Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/89/e6/b75dc07465f7532a27cd0aa4655ca20056312631e3eba30a19aebef89f44/scipion_em_xmipp-26.2.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8) 2026-02-13T00:53:29,906 Found link https://files.pythonhosted.org/packages/b3/09/9cca8ca1688dc5a4a9cf6048dfb0761ff120fe5cd48e6aaa25349450ee5f/scipion_em_xmipp-26.2.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8), version: 26.2.0 2026-02-13T00:53:29,906 Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/56/e9/aac728aaa0a1b10a48aeac2b4a56451c7f723180606ff598d0917a547182/scipion_em_xmipp-27.0.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8) 2026-02-13T00:53:29,907 Found link https://files.pythonhosted.org/packages/10/d4/e694758f028eeb9715f3e9af9a73effd7aa78e7eab74d9243f1bcde63e3f/scipion_em_xmipp-27.0.0.tar.gz (from 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https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.2b0-py3-none-any.whl#sha256=a3c81606d051b477612e1eeed371682fdb4d1fa86aa41c28ff73dc8f44003e14 (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-02-13T00:53:30,092 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.1b0-py3-none-any.whl#sha256=5477ba6a7bdacacbd72882e68d7eaceb2a24f32ab32007d2fe70bdab95a2df63 (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-02-13T00:53:30,093 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3b0-py3-none-any.whl#sha256=e484efa82b28bf099ece04ecdc9a642dafd23ffc44ae414d77989f9c576bb96a (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-02-13T00:53:30,093 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-1.0.0b1-py3-none-any.whl#sha256=6d36929f4411ac1ff69548230bf74d77c4cc75e68aead196203186fb26094e49 (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-02-13T00:53:30,094 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-1.0.0a1-py3-none-any.whl#sha256=c088df2fbccef99c06f812beb1584e487375276c582430f35a8a78620ea3a41f (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-02-13T00:53:30,094 Skipping link: not a file: https://www.piwheels.org/simple/scipion-em-xmipp/ 2026-02-13T00:53:30,095 Skipping link: not a file: https://pypi.org/simple/scipion-em-xmipp/ 2026-02-13T00:53:30,120 Given no hashes to check 1 links for project 'scipion-em-xmipp': discarding no candidates 2026-02-13T00:53:30,139 Collecting scipion-em-xmipp==27.0.0 2026-02-13T00:53:30,141 Created temporary directory: /tmp/pip-unpack-ap5uelvl 2026-02-13T00:53:30,366 Downloading scipion_em_xmipp-27.0.0.tar.gz (1.5 MB) 2026-02-13T00:53:31,270 Added scipion-em-xmipp==27.0.0 from https://files.pythonhosted.org/packages/10/d4/e694758f028eeb9715f3e9af9a73effd7aa78e7eab74d9243f1bcde63e3f/scipion_em_xmipp-27.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-zu3__kyp' 2026-02-13T00:53:31,274 Created temporary directory: /tmp/pip-build-env-b3z8tml_ 2026-02-13T00:53:31,279 Installing build dependencies: started 2026-02-13T00:53:31,280 Running command pip subprocess to install build dependencies 2026-02-13T00:53:32,408 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-02-13T00:53:32,959 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-02-13T00:53:32,982 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-02-13T00:53:34,711 Collecting setuptools 2026-02-13T00:53:34,812 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.0-py3-none-any.whl (1.0 MB) 2026-02-13T00:53:37,829 Installing collected packages: setuptools 2026-02-13T00:53:40,965 Successfully installed setuptools-82.0.0 2026-02-13T00:53:41,232 Installing build dependencies: finished with status 'done' 2026-02-13T00:53:41,239 Getting requirements to build wheel: started 2026-02-13T00:53:41,240 Running command Getting requirements to build wheel 2026-02-13T00:53:41,832 No `packages` or `py_modules` configuration, performing automatic discovery. 2026-02-13T00:53:41,832 `flat-layout` detected -- analysing . 2026-02-13T00:53:41,856 discovered packages -- ['xmipp3', 'xmipp3.convert', 'xmipp3.protocols', 'xmipp3.viewers', 'xmipp3.legacy', 'xmipp3.tests', 'xmipp3.protocols.protocol_preprocess', 'xmipp3.protocols.protocol_projmatch', 'xmipp3.legacy.protocols', 'xmipp3.legacy.viewers', 'xmipp3.legacy.tests'] 2026-02-13T00:53:41,861 /tmp/pip-build-env-b3z8tml_/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-02-13T00:53:41,861 !! 2026-02-13T00:53:41,862 ******************************************************************************** 2026-02-13T00:53:41,863 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-02-13T00:53:41,864 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-02-13T00:53:41,864 or your builds will no longer be supported. 2026-02-13T00:53:41,865 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-13T00:53:41,866 ******************************************************************************** 2026-02-13T00:53:41,867 !! 2026-02-13T00:53:41,867 corresp(dist, value, root_dir) 2026-02-13T00:53:41,947 running egg_info 2026-02-13T00:53:41,952 writing scipion_em_xmipp.egg-info/PKG-INFO 2026-02-13T00:53:41,955 writing dependency_links to scipion_em_xmipp.egg-info/dependency_links.txt 2026-02-13T00:53:41,957 writing entry points to scipion_em_xmipp.egg-info/entry_points.txt 2026-02-13T00:53:41,959 writing requirements to scipion_em_xmipp.egg-info/requires.txt 2026-02-13T00:53:41,960 writing top-level names to scipion_em_xmipp.egg-info/top_level.txt 2026-02-13T00:53:41,999 reading manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt' 2026-02-13T00:53:42,014 reading manifest template 'MANIFEST.in' 2026-02-13T00:53:42,017 adding license file 'LICENSE' 2026-02-13T00:53:42,030 writing manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt' 2026-02-13T00:53:42,128 Getting requirements to build wheel: finished with status 'done' 2026-02-13T00:53:42,132 Created temporary directory: /tmp/pip-modern-metadata-weem662c 2026-02-13T00:53:42,134 Preparing metadata (pyproject.toml): started 2026-02-13T00:53:42,135 Running command Preparing metadata (pyproject.toml) 2026-02-13T00:53:42,723 No `packages` or `py_modules` configuration, performing automatic discovery. 2026-02-13T00:53:42,723 `flat-layout` detected -- analysing . 2026-02-13T00:53:42,742 discovered packages -- ['xmipp3', 'xmipp3.convert', 'xmipp3.protocols', 'xmipp3.viewers', 'xmipp3.legacy', 'xmipp3.tests', 'xmipp3.protocols.protocol_preprocess', 'xmipp3.protocols.protocol_projmatch', 'xmipp3.legacy.protocols', 'xmipp3.legacy.viewers', 'xmipp3.legacy.tests'] 2026-02-13T00:53:42,746 /tmp/pip-build-env-b3z8tml_/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-02-13T00:53:42,747 !! 2026-02-13T00:53:42,748 ******************************************************************************** 2026-02-13T00:53:42,749 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-02-13T00:53:42,750 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-02-13T00:53:42,751 or your builds will no longer be supported. 2026-02-13T00:53:42,752 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-13T00:53:42,752 ******************************************************************************** 2026-02-13T00:53:42,753 !! 2026-02-13T00:53:42,753 corresp(dist, value, root_dir) 2026-02-13T00:53:42,830 running dist_info 2026-02-13T00:53:42,840 creating /tmp/pip-modern-metadata-weem662c/scipion_em_xmipp.egg-info 2026-02-13T00:53:42,841 writing /tmp/pip-modern-metadata-weem662c/scipion_em_xmipp.egg-info/PKG-INFO 2026-02-13T00:53:42,845 writing dependency_links to /tmp/pip-modern-metadata-weem662c/scipion_em_xmipp.egg-info/dependency_links.txt 2026-02-13T00:53:42,847 writing entry points to /tmp/pip-modern-metadata-weem662c/scipion_em_xmipp.egg-info/entry_points.txt 2026-02-13T00:53:42,849 writing requirements to /tmp/pip-modern-metadata-weem662c/scipion_em_xmipp.egg-info/requires.txt 2026-02-13T00:53:42,850 writing top-level names to /tmp/pip-modern-metadata-weem662c/scipion_em_xmipp.egg-info/top_level.txt 2026-02-13T00:53:42,851 writing manifest file '/tmp/pip-modern-metadata-weem662c/scipion_em_xmipp.egg-info/SOURCES.txt' 2026-02-13T00:53:42,887 reading manifest file '/tmp/pip-modern-metadata-weem662c/scipion_em_xmipp.egg-info/SOURCES.txt' 2026-02-13T00:53:42,889 reading manifest template 'MANIFEST.in' 2026-02-13T00:53:42,891 adding license file 'LICENSE' 2026-02-13T00:53:42,901 writing manifest file '/tmp/pip-modern-metadata-weem662c/scipion_em_xmipp.egg-info/SOURCES.txt' 2026-02-13T00:53:42,903 creating '/tmp/pip-modern-metadata-weem662c/scipion_em_xmipp-27.0.0.dist-info' 2026-02-13T00:53:43,026 Preparing metadata (pyproject.toml): finished with status 'done' 2026-02-13T00:53:43,031 Source in /tmp/pip-wheel-ej1_6vuk/scipion-em-xmipp_f0899cb4d1844230aabe99788fcbc647 has version 27.0.0, which satisfies requirement scipion-em-xmipp==27.0.0 from https://files.pythonhosted.org/packages/10/d4/e694758f028eeb9715f3e9af9a73effd7aa78e7eab74d9243f1bcde63e3f/scipion_em_xmipp-27.0.0.tar.gz 2026-02-13T00:53:43,032 Removed scipion-em-xmipp==27.0.0 from https://files.pythonhosted.org/packages/10/d4/e694758f028eeb9715f3e9af9a73effd7aa78e7eab74d9243f1bcde63e3f/scipion_em_xmipp-27.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-zu3__kyp' 2026-02-13T00:53:43,037 Created temporary directory: /tmp/pip-unpack-9mv6rdm2 2026-02-13T00:53:43,038 Building wheels for collected packages: scipion-em-xmipp 2026-02-13T00:53:43,042 Created temporary directory: /tmp/pip-wheel-mptcn8s5 2026-02-13T00:53:43,043 Destination directory: /tmp/pip-wheel-mptcn8s5 2026-02-13T00:53:43,045 Building wheel for scipion-em-xmipp (pyproject.toml): started 2026-02-13T00:53:43,046 Running command Building wheel for scipion-em-xmipp (pyproject.toml) 2026-02-13T00:53:43,591 No `packages` or `py_modules` configuration, performing automatic discovery. 2026-02-13T00:53:43,592 `flat-layout` detected -- analysing . 2026-02-13T00:53:43,611 discovered packages -- ['xmipp3', 'xmipp3.convert', 'xmipp3.protocols', 'xmipp3.viewers', 'xmipp3.legacy', 'xmipp3.tests', 'xmipp3.protocols.protocol_preprocess', 'xmipp3.protocols.protocol_projmatch', 'xmipp3.legacy.protocols', 'xmipp3.legacy.viewers', 'xmipp3.legacy.tests'] 2026-02-13T00:53:43,615 /tmp/pip-build-env-b3z8tml_/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-02-13T00:53:43,616 !! 2026-02-13T00:53:43,617 ******************************************************************************** 2026-02-13T00:53:43,618 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-02-13T00:53:43,619 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-02-13T00:53:43,620 or your builds will no longer be supported. 2026-02-13T00:53:43,621 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-13T00:53:43,621 ******************************************************************************** 2026-02-13T00:53:43,622 !! 2026-02-13T00:53:43,622 corresp(dist, value, root_dir) 2026-02-13T00:53:43,699 running bdist_wheel 2026-02-13T00:53:43,716 running build 2026-02-13T00:53:43,717 running build_py 2026-02-13T00:53:43,723 creating build/lib/xmipp3 2026-02-13T00:53:43,725 copying xmipp3/version.py -> build/lib/xmipp3 2026-02-13T00:53:43,727 copying xmipp3/wizards.py -> build/lib/xmipp3 2026-02-13T00:53:43,730 copying xmipp3/base.py -> build/lib/xmipp3 2026-02-13T00:53:43,732 copying xmipp3/__init__.py -> build/lib/xmipp3 2026-02-13T00:53:43,735 copying xmipp3/programs.py -> build/lib/xmipp3 2026-02-13T00:53:43,737 copying xmipp3/utils.py -> build/lib/xmipp3 2026-02-13T00:53:43,739 copying xmipp3/bibtex.py -> build/lib/xmipp3 2026-02-13T00:53:43,742 copying xmipp3/protocolsCollectInfo.py -> build/lib/xmipp3 2026-02-13T00:53:43,744 copying xmipp3/checkProtocolsConf.py -> build/lib/xmipp3 2026-02-13T00:53:43,746 copying xmipp3/constants.py -> build/lib/xmipp3 2026-02-13T00:53:43,748 copying xmipp3/logParser.py -> build/lib/xmipp3 2026-02-13T00:53:43,750 creating build/lib/xmipp3/convert 2026-02-13T00:53:43,751 copying xmipp3/convert/__init__.py -> build/lib/xmipp3/convert 2026-02-13T00:53:43,753 copying xmipp3/convert/convert.py -> build/lib/xmipp3/convert 2026-02-13T00:53:43,756 copying xmipp3/convert/dataimport.py -> build/lib/xmipp3/convert 2026-02-13T00:53:43,759 copying xmipp3/convert/io_coordinates.py -> build/lib/xmipp3/convert 2026-02-13T00:53:43,763 creating build/lib/xmipp3/protocols 2026-02-13T00:53:43,765 copying xmipp3/protocols/protocol_particle_pick_pairs.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,767 copying xmipp3/protocols/protocol_screen_deepConsensus.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,770 copying xmipp3/protocols/protocol_align_volume_and_particles.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,773 copying xmipp3/protocols/protocol_apply_transformation_matrix.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,775 copying xmipp3/protocols/protocol_center_particles.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,777 copying xmipp3/protocols/protocol_structure_map_zernike3d.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,780 copying xmipp3/protocols/protocol_reconstruct_significant.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,782 copying xmipp3/protocols/protocol_angular_graph_consistency.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,785 copying xmipp3/protocols/protocol_volume_adjust_sub.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,788 copying xmipp3/protocols/protocol_volume_consensus.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,790 copying xmipp3/protocols/protocol_volume_local_sharpening.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,792 copying xmipp3/protocols/protocol_mics_defocus_balancer.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,795 copying xmipp3/protocols/protocol_assignment_tilt_pair.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,797 copying xmipp3/protocols/protocol_random_conical_tilt.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,800 copying xmipp3/protocols/protocol_volume_strain.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,804 copying xmipp3/protocols/__init__.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,806 copying xmipp3/protocols/protocol_particle_pick.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,809 copying xmipp3/protocols/protocol_preprocess_micrographs.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,811 copying xmipp3/protocols/protocol_resolution_deepres.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,814 copying xmipp3/protocols/protocol_shift_particles.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,816 copying xmipp3/protocols/protocol_resolution_directional.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,818 copying xmipp3/protocols/protocol_structure_map.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,820 copying xmipp3/protocols/protocol_break_symmetry.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,823 copying xmipp3/protocols/protocol_classify_pca_streaming.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,825 copying xmipp3/protocols/protocol_local_ctf.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,827 copying xmipp3/protocols/protocol_flexalign.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,830 copying xmipp3/protocols/protocol_particle_pick_remove_duplicates.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,832 copying xmipp3/protocols/protocol_pick_noise.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,834 copying xmipp3/protocols/protocol_classes_2d_mapping.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,837 copying xmipp3/protocols/protocol_reconstruct_swarm.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,839 copying xmipp3/protocols/protocol_cl2d.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,842 copying xmipp3/protocols/protocol_ml2d.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,844 copying xmipp3/protocols/protocol_validate_nontilt.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,847 copying xmipp3/protocols/protocol_compare_angles.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,849 copying xmipp3/protocols/protocol_classify_pca.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,852 copying xmipp3/protocols/protocol_multireference_alignability.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,854 copying xmipp3/protocols/protocol_apply_alignment.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,856 copying xmipp3/protocols/protocol_helical_parameters.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,859 copying xmipp3/protocols/protocol_validate_overfitting.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,861 copying xmipp3/protocols/protocol_resolution_fso.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,864 copying xmipp3/protocols/protocol_particle_pick_consensus.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,866 copying xmipp3/protocols/protocol_ctf_correct_phase.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,868 copying xmipp3/protocols/protocol_tilt_analysis.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,870 copying xmipp3/protocols/protocol_consensus_local_ctf.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,873 copying xmipp3/protocols/protocol_shift_volume.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,875 copying xmipp3/protocols/protocol_compare_reprojections.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,878 copying xmipp3/protocols/protocol_denoise_particles.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,880 copying xmipp3/protocols/protocol_apply_tilt_to_ctf.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,882 copying xmipp3/protocols/protocol_screen_particles.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,885 copying xmipp3/protocols/protocol_extract_particles.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,887 copying xmipp3/protocols/protocol_core_analysis.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,889 copying xmipp3/protocols/protocol_kerdensom.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,892 copying xmipp3/protocols/protocol_volume_deform_zernike3d.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,894 copying xmipp3/protocols/protocol_multiple_fscs.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,897 copying xmipp3/protocols/protocol_write_testC.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,899 copying xmipp3/protocols/protocol_movie_alignment_consensus.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,902 copying xmipp3/protocols/protocol_movie_max_shift.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,904 copying xmipp3/protocols/protocol_movie_split_frames.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,906 copying xmipp3/protocols/protocol_resolution3d.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,908 copying xmipp3/protocols/protocol_eliminate_empty_images.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,911 copying xmipp3/protocols/protocol_analyze_local_ctf.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,913 copying xmipp3/protocols/protocol_apply_zernike3d.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,915 copying xmipp3/protocols/protocol_extract_asymmetric_unit.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,917 copying xmipp3/protocols/protocol_volume_local_adjust.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,919 copying xmipp3/protocols/protocol_cl2d_clustering.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,921 copying xmipp3/protocols/protocol_movie_gain.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,924 copying xmipp3/protocols/protocol_convert_pdb.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,926 copying xmipp3/protocols/protocol_resolution_monogenic_signal.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,929 copying xmipp3/protocols/protocol_phantom_create.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,931 copying xmipp3/protocols/protocol_deep_micrograph_screen.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,933 copying xmipp3/protocols/protocol_resolution_bfactor.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,935 copying xmipp3/protocols/protocol_trigger_data.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,938 copying xmipp3/protocols/protocol_create_gallery.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,940 copying xmipp3/protocols/protocol_deep_hand.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,942 copying xmipp3/protocols/protocol_movie_dose_analysis.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,945 copying xmipp3/protocols/protocol_particle_pick_automatic.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,947 copying xmipp3/protocols/protocol_extract_particles_pairs.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,950 copying xmipp3/protocols/protocol_subtract_projection.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,952 copying xmipp3/protocols/protocol_ctf_correct_wiener2d.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,955 copying xmipp3/protocols/protocol_ctf_defocus_group.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,957 copying xmipp3/protocols/protocol_consensus_classes.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,959 copying xmipp3/protocols/protocol_cl2d_align.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,962 copying xmipp3/protocols/protocol_postProcessing_deepPostProcessing.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,964 copying xmipp3/protocols/protocol_write_testP.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,967 copying xmipp3/protocols/protocol_ransac.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,969 copying xmipp3/protocols/protocol_generate_reprojections.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,972 copying xmipp3/protocols/protocol_ctf_micrographs.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,974 copying xmipp3/protocols/protocol_rotate_volume.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,976 copying xmipp3/protocols/protocol_compute_likelihood.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,979 copying xmipp3/protocols/protocol_reconstruct_highres.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,984 copying xmipp3/protocols/protocol_reconstruct_fourier.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,986 copying xmipp3/protocols/protocol_rotational_symmetry.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,989 copying xmipp3/protocols/protocol_ctf_consensus.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,992 copying xmipp3/protocols/protocol_normalize_strain.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,994 copying xmipp3/protocols/protocol_simulate_ctf.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,996 copying xmipp3/protocols/protocol_align_volume.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:43,998 copying xmipp3/protocols/protocol_validate_fscq.py -> build/lib/xmipp3/protocols 2026-02-13T00:53:44,002 creating build/lib/xmipp3/viewers 2026-02-13T00:53:44,003 copying xmipp3/viewers/viewer_normalize_strain.py -> build/lib/xmipp3/viewers 2026-02-13T00:53:44,005 copying xmipp3/viewers/viewer_resolution3d.py -> build/lib/xmipp3/viewers 2026-02-13T00:53:44,008 copying xmipp3/viewers/viewer_volume_subtraction.py -> build/lib/xmipp3/viewers 2026-02-13T00:53:44,010 copying xmipp3/viewers/viewer_validate_fscq.py -> build/lib/xmipp3/viewers 2026-02-13T00:53:44,013 copying xmipp3/viewers/viewer_ml2d.py -> build/lib/xmipp3/viewers 2026-02-13T00:53:44,016 copying xmipp3/viewers/viewer_subtract_projection.py -> build/lib/xmipp3/viewers 2026-02-13T00:53:44,017 copying xmipp3/viewers/viewer_volume_strain.py -> build/lib/xmipp3/viewers 2026-02-13T00:53:44,020 copying xmipp3/viewers/viewer_dose_analysis.py -> build/lib/xmipp3/viewers 2026-02-13T00:53:44,022 copying xmipp3/viewers/__init__.py -> build/lib/xmipp3/viewers 2026-02-13T00:53:44,024 copying xmipp3/viewers/viewer_apply_tilt_to_ctf.py -> build/lib/xmipp3/viewers 2026-02-13T00:53:44,026 copying xmipp3/viewers/viewer_ransac.py -> build/lib/xmipp3/viewers 2026-02-13T00:53:44,027 copying xmipp3/viewers/viewer_deepEMHancer.py -> build/lib/xmipp3/viewers 2026-02-13T00:53:44,030 copying xmipp3/viewers/viewer_projmatch.py -> build/lib/xmipp3/viewers 2026-02-13T00:53:44,033 copying xmipp3/viewers/viewer_resolution_fso.py -> build/lib/xmipp3/viewers 2026-02-13T00:53:44,035 copying xmipp3/viewers/viewer_validate_nontilt.py -> build/lib/xmipp3/viewers 2026-02-13T00:53:44,037 copying xmipp3/viewers/viewer_validate_overfitting.py -> build/lib/xmipp3/viewers 2026-02-13T00:53:44,040 copying xmipp3/viewers/viewer_swarm.py -> build/lib/xmipp3/viewers 2026-02-13T00:53:44,042 copying xmipp3/viewers/viewer_pdb_deform_zernike3d.py -> build/lib/xmipp3/viewers 2026-02-13T00:53:44,044 copying xmipp3/viewers/viewer_extract_asymmetric_unit.py -> build/lib/xmipp3/viewers 2026-02-13T00:53:44,046 copying xmipp3/viewers/viewer_resolution_monogenic_signal.py -> build/lib/xmipp3/viewers 2026-02-13T00:53:44,049 copying xmipp3/viewers/viewer_reconstruct_highres.py -> build/lib/xmipp3/viewers 2026-02-13T00:53:44,051 copying xmipp3/viewers/viewer_structure_map.py -> build/lib/xmipp3/viewers 2026-02-13T00:53:44,054 copying xmipp3/viewers/viewer_resolution_deepres.py -> build/lib/xmipp3/viewers 2026-02-13T00:53:44,056 copying xmipp3/viewers/viewer_eliminate_empty_images.py -> build/lib/xmipp3/viewers 2026-02-13T00:53:44,059 copying xmipp3/viewers/viewer_cl2d_clustering.py -> build/lib/xmipp3/viewers 2026-02-13T00:53:44,061 copying xmipp3/viewers/viewer_LL_matrix.py -> build/lib/xmipp3/viewers 2026-02-13T00:53:44,064 copying xmipp3/viewers/plotter.py -> build/lib/xmipp3/viewers 2026-02-13T00:53:44,065 copying xmipp3/viewers/viewer_analyze_local_ctf.py -> build/lib/xmipp3/viewers 2026-02-13T00:53:44,068 copying xmipp3/viewers/viewer_ctf_consensus.py -> build/lib/xmipp3/viewers 2026-02-13T00:53:44,070 copying xmipp3/viewers/viewer_volume_deform_zernike3d.py -> build/lib/xmipp3/viewers 2026-02-13T00:53:44,072 copying xmipp3/viewers/viewer_resolution_directional.py -> build/lib/xmipp3/viewers 2026-02-13T00:53:44,075 copying xmipp3/viewers/viewer_movie_alignment.py -> build/lib/xmipp3/viewers 2026-02-13T00:53:44,077 copying xmipp3/viewers/viewer_deep_consensus.py -> build/lib/xmipp3/viewers 2026-02-13T00:53:44,080 copying xmipp3/viewers/viewer_volume_consensus.py -> build/lib/xmipp3/viewers 2026-02-13T00:53:44,082 copying xmipp3/viewers/viewer_local_sharpening.py -> build/lib/xmipp3/viewers 2026-02-13T00:53:44,084 copying xmipp3/viewers/viewer.py -> build/lib/xmipp3/viewers 2026-02-13T00:53:44,087 copying xmipp3/viewers/viewer_deep_micrograph_cleaner.py -> build/lib/xmipp3/viewers 2026-02-13T00:53:44,089 copying xmipp3/viewers/viewer_consensus_classes.py -> build/lib/xmipp3/viewers 2026-02-13T00:53:44,091 copying xmipp3/viewers/viewer_resolution_bfactor.py -> build/lib/xmipp3/viewers 2026-02-13T00:53:44,093 copying xmipp3/viewers/viewer_cl2d.py -> build/lib/xmipp3/viewers 2026-02-13T00:53:44,096 creating build/lib/xmipp3/legacy 2026-02-13T00:53:44,097 copying xmipp3/legacy/__init__.py -> build/lib/xmipp3/legacy 2026-02-13T00:53:44,099 creating build/lib/xmipp3/tests 2026-02-13T00:53:44,100 copying xmipp3/tests/test_protocol_angular_graph_consistency.py -> build/lib/xmipp3/tests 2026-02-13T00:53:44,102 copying xmipp3/tests/test_protocol_ctf_consensus.py -> build/lib/xmipp3/tests 2026-02-13T00:53:44,105 copying xmipp3/tests/test_protocol_consensus_classes3D.py -> build/lib/xmipp3/tests 2026-02-13T00:53:44,107 copying xmipp3/tests/test_protocol_split_frames.py -> build/lib/xmipp3/tests 2026-02-13T00:53:44,110 copying xmipp3/tests/test_protocol_compare_angles.py -> build/lib/xmipp3/tests 2026-02-13T00:53:44,112 copying xmipp3/tests/test_protocols_zernike3d.py -> build/lib/xmipp3/tests 2026-02-13T00:53:44,114 copying xmipp3/tests/__init__.py -> build/lib/xmipp3/tests 2026-02-13T00:53:44,116 copying xmipp3/tests/test_protocols_xmipp_movies.py -> build/lib/xmipp3/tests 2026-02-13T00:53:44,119 copying xmipp3/tests/test_protocol_monodir.py -> build/lib/xmipp3/tests 2026-02-13T00:53:44,120 copying xmipp3/tests/test_protocols_continuousflex.py -> build/lib/xmipp3/tests 2026-02-13T00:53:44,123 copying xmipp3/tests/test_protocols_add_noise.py -> build/lib/xmipp3/tests 2026-02-13T00:53:44,125 copying xmipp3/tests/test_protocols_realignment_classes.py -> build/lib/xmipp3/tests 2026-02-13T00:53:44,127 copying xmipp3/tests/test_protocols_highres.py -> build/lib/xmipp3/tests 2026-02-13T00:53:44,129 copying xmipp3/tests/test_protocol_multireference_alignability.py -> build/lib/xmipp3/tests 2026-02-13T00:53:44,132 copying xmipp3/tests/test_protocols_monores.py -> build/lib/xmipp3/tests 2026-02-13T00:53:44,134 copying xmipp3/tests/test_protocols_xmipp_2d.py -> build/lib/xmipp3/tests 2026-02-13T00:53:44,138 copying xmipp3/tests/test_protocol_apply_transformation_matrix.py -> build/lib/xmipp3/tests 2026-02-13T00:53:44,140 copying xmipp3/tests/test_protocols_deepVolPostprocessing.py -> build/lib/xmipp3/tests 2026-02-13T00:53:44,142 copying xmipp3/tests/test_protocols_localdeblur.py -> build/lib/xmipp3/tests 2026-02-13T00:53:44,145 copying xmipp3/tests/test_protocol_screen_deepConsensus.py -> build/lib/xmipp3/tests 2026-02-13T00:53:44,147 copying xmipp3/tests/test_protocols_xmipp_mics.py -> build/lib/xmipp3/tests 2026-02-13T00:53:44,151 copying xmipp3/tests/test_protocol_validate_overfitting.py -> build/lib/xmipp3/tests 2026-02-13T00:53:44,153 copying xmipp3/tests/test_protocols_deepcenter_predict.py -> build/lib/xmipp3/tests 2026-02-13T00:53:44,155 copying xmipp3/tests/test_protocol_extract_asymmetric_unit.py -> build/lib/xmipp3/tests 2026-02-13T00:53:44,158 copying xmipp3/tests/test_protocol_reconstruct_fourier.py -> build/lib/xmipp3/tests 2026-02-13T00:53:44,160 copying xmipp3/tests/test_protocol_likelihood.py -> build/lib/xmipp3/tests 2026-02-13T00:53:44,163 copying xmipp3/tests/test_protocol_simulate_ctf.py -> build/lib/xmipp3/tests 2026-02-13T00:53:44,166 copying xmipp3/tests/test_convert_xmipp.py -> build/lib/xmipp3/tests 2026-02-13T00:53:44,169 copying xmipp3/tests/test_protocols_xmipp_movie_resize.py -> build/lib/xmipp3/tests 2026-02-13T00:53:44,172 copying xmipp3/tests/test_protocols_fso.py -> build/lib/xmipp3/tests 2026-02-13T00:53:44,174 copying xmipp3/tests/test_protocols_local_defocus.py -> build/lib/xmipp3/tests 2026-02-13T00:53:44,177 copying xmipp3/tests/test_protocol_validate_fscq.py -> build/lib/xmipp3/tests 2026-02-13T00:53:44,179 copying xmipp3/tests/test_protocol_multiple_fsc.py -> build/lib/xmipp3/tests 2026-02-13T00:53:44,181 copying xmipp3/tests/test_protocols_deepres.py -> build/lib/xmipp3/tests 2026-02-13T00:53:44,183 copying xmipp3/tests/test_protocols_xmipp_3d.py -> build/lib/xmipp3/tests 2026-02-13T00:53:44,188 creating build/lib/xmipp3/protocols/protocol_preprocess 2026-02-13T00:53:44,189 copying xmipp3/protocols/protocol_preprocess/__init__.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-02-13T00:53:44,191 copying xmipp3/protocols/protocol_preprocess/protocol_crop_resize.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-02-13T00:53:44,193 copying xmipp3/protocols/protocol_preprocess/protocol_create_mask2d.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-02-13T00:53:44,195 copying xmipp3/protocols/protocol_preprocess/protocol_image_operate.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-02-13T00:53:44,198 copying xmipp3/protocols/protocol_preprocess/protocol_mask.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-02-13T00:53:44,200 copying xmipp3/protocols/protocol_preprocess/protocol_create_mask3d.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-02-13T00:53:44,203 copying xmipp3/protocols/protocol_preprocess/protocol_preprocess.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-02-13T00:53:44,206 copying xmipp3/protocols/protocol_preprocess/protocol_movie_resize.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-02-13T00:53:44,208 copying xmipp3/protocols/protocol_preprocess/protocol_add_noise.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-02-13T00:53:44,210 copying xmipp3/protocols/protocol_preprocess/geometrical_mask.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-02-13T00:53:44,213 copying xmipp3/protocols/protocol_preprocess/protocol_filter.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-02-13T00:53:44,215 copying xmipp3/protocols/protocol_preprocess/protocol_process.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-02-13T00:53:44,218 creating build/lib/xmipp3/protocols/protocol_projmatch 2026-02-13T00:53:44,219 copying xmipp3/protocols/protocol_projmatch/__init__.py -> build/lib/xmipp3/protocols/protocol_projmatch 2026-02-13T00:53:44,222 copying xmipp3/protocols/protocol_projmatch/projmatch_initialize.py -> build/lib/xmipp3/protocols/protocol_projmatch 2026-02-13T00:53:44,224 copying xmipp3/protocols/protocol_projmatch/protocol_projmatch.py -> build/lib/xmipp3/protocols/protocol_projmatch 2026-02-13T00:53:44,227 copying xmipp3/protocols/protocol_projmatch/projmatch_form.py -> build/lib/xmipp3/protocols/protocol_projmatch 2026-02-13T00:53:44,229 copying xmipp3/protocols/protocol_projmatch/projmatch_steps.py -> build/lib/xmipp3/protocols/protocol_projmatch 2026-02-13T00:53:44,233 creating build/lib/xmipp3/legacy/protocols 2026-02-13T00:53:44,234 copying xmipp3/legacy/protocols/protocol_metaprotocol_discrete_heterogeneity_scheduler.py -> build/lib/xmipp3/legacy/protocols 2026-02-13T00:53:44,237 copying xmipp3/legacy/protocols/protocol_split_volume_hierarchical_cluster.py -> build/lib/xmipp3/legacy/protocols 2026-02-13T00:53:44,240 copying xmipp3/legacy/protocols/protocol_metaprotocol_create_subset.py -> build/lib/xmipp3/legacy/protocols 2026-02-13T00:53:44,242 copying xmipp3/legacy/protocols/protocol_metaprotocol_create_output.py -> build/lib/xmipp3/legacy/protocols 2026-02-13T00:53:44,244 copying xmipp3/legacy/protocols/protocol_rotational_spectra.py -> build/lib/xmipp3/legacy/protocols 2026-02-13T00:53:44,246 copying xmipp3/legacy/protocols/protocol_classify_kmeans2d.py -> build/lib/xmipp3/legacy/protocols 2026-02-13T00:53:44,249 copying xmipp3/legacy/protocols/protocol_solid_angles.py -> build/lib/xmipp3/legacy/protocols 2026-02-13T00:53:44,252 copying xmipp3/legacy/protocols/protocol_kmeans_clustering.py -> build/lib/xmipp3/legacy/protocols 2026-02-13T00:53:44,254 copying xmipp3/legacy/protocols/protocol_metaprotocol_golden_highres.py -> build/lib/xmipp3/legacy/protocols 2026-02-13T00:53:44,257 copying xmipp3/legacy/protocols/protocol_movie_opticalflow.py -> build/lib/xmipp3/legacy/protocols 2026-02-13T00:53:44,259 copying xmipp3/legacy/protocols/__init__.py -> build/lib/xmipp3/legacy/protocols 2026-02-13T00:53:44,261 copying xmipp3/legacy/protocols/protocol_deep_center.py -> build/lib/xmipp3/legacy/protocols 2026-02-13T00:53:44,263 copying xmipp3/legacy/protocols/protocol_particle_boxsize.py -> build/lib/xmipp3/legacy/protocols 2026-02-13T00:53:44,265 copying xmipp3/legacy/protocols/protocol_extract_particles_movies.py -> build/lib/xmipp3/legacy/protocols 2026-02-13T00:53:44,267 copying xmipp3/legacy/protocols/protocol_apply_deformation_zernike3d.py -> build/lib/xmipp3/legacy/protocols 2026-02-13T00:53:44,270 copying xmipp3/legacy/protocols/protocol_classification_gpuCorr_semi.py -> build/lib/xmipp3/legacy/protocols 2026-02-13T00:53:44,272 copying xmipp3/legacy/protocols/protocol_deep_denoising.py -> build/lib/xmipp3/legacy/protocols 2026-02-13T00:53:44,275 copying xmipp3/legacy/protocols/protocol_movie_average.py -> build/lib/xmipp3/legacy/protocols 2026-02-13T00:53:44,277 copying xmipp3/legacy/protocols/protocol_deep_align.py -> build/lib/xmipp3/legacy/protocols 2026-02-13T00:53:44,280 copying xmipp3/legacy/protocols/protocol_classification_gpuCorr.py -> build/lib/xmipp3/legacy/protocols 2026-02-13T00:53:44,283 copying xmipp3/legacy/protocols/protocol_classification_gpuCorr_full.py -> build/lib/xmipp3/legacy/protocols 2026-02-13T00:53:44,285 copying xmipp3/legacy/protocols/protocol_screen_deeplearning.py -> build/lib/xmipp3/legacy/protocols 2026-02-13T00:53:44,288 copying xmipp3/legacy/protocols/protocol_deep_center_predict.py -> build/lib/xmipp3/legacy/protocols 2026-02-13T00:53:44,290 copying xmipp3/legacy/protocols/protocol_reconstruct_heterogeneous.py -> build/lib/xmipp3/legacy/protocols 2026-02-13T00:53:44,293 copying xmipp3/legacy/protocols/protocol_angular_resolution_alignment.py -> build/lib/xmipp3/legacy/protocols 2026-02-13T00:53:44,296 copying xmipp3/legacy/protocols/protocol_enrich.py -> build/lib/xmipp3/legacy/protocols 2026-02-13T00:53:44,298 copying xmipp3/legacy/protocols/protocol_split_volume.py -> build/lib/xmipp3/legacy/protocols 2026-02-13T00:53:44,300 copying xmipp3/legacy/protocols/protocol_subtract_projection.py -> build/lib/xmipp3/legacy/protocols 2026-02-13T00:53:44,303 copying xmipp3/legacy/protocols/protocol_mltomo.py -> build/lib/xmipp3/legacy/protocols 2026-02-13T00:53:44,306 creating build/lib/xmipp3/legacy/viewers 2026-02-13T00:53:44,307 copying xmipp3/legacy/viewers/viewer_mltomo.py -> build/lib/xmipp3/legacy/viewers 2026-02-13T00:53:44,309 copying xmipp3/legacy/viewers/viewer_metaprotocol_golden_highres.py -> build/lib/xmipp3/legacy/viewers 2026-02-13T00:53:44,312 copying xmipp3/legacy/viewers/viewer_deep_align.py -> build/lib/xmipp3/legacy/viewers 2026-02-13T00:53:44,314 copying xmipp3/legacy/viewers/viewer_angular_resolution_alignment.py -> build/lib/xmipp3/legacy/viewers 2026-02-13T00:53:44,316 copying xmipp3/legacy/viewers/viewer_solid_angles.py -> build/lib/xmipp3/legacy/viewers 2026-02-13T00:53:44,318 copying xmipp3/legacy/viewers/viewer_split_volume.py -> build/lib/xmipp3/legacy/viewers 2026-02-13T00:53:44,321 creating build/lib/xmipp3/legacy/tests 2026-02-13T00:53:44,322 copying xmipp3/legacy/tests/test_protocols_gpuCorr_semiStreaming.py -> build/lib/xmipp3/legacy/tests 2026-02-13T00:53:44,324 copying xmipp3/legacy/tests/test_protocols_gpuCorr_classifier.py -> build/lib/xmipp3/legacy/tests 2026-02-13T00:53:44,326 copying xmipp3/legacy/tests/test_protocols_xmipp_movies.py -> build/lib/xmipp3/legacy/tests 2026-02-13T00:53:44,329 copying xmipp3/legacy/tests/test_protocols_subtract_projection.py -> build/lib/xmipp3/legacy/tests 2026-02-13T00:53:44,332 copying xmipp3/legacy/tests/test_protocol_deep_denoising.py -> build/lib/xmipp3/legacy/tests 2026-02-13T00:53:44,334 copying xmipp3/legacy/tests/test_protocols_metaprotocol_golden_highres.py -> build/lib/xmipp3/legacy/tests 2026-02-13T00:53:44,336 copying xmipp3/legacy/tests/test_protocols_metaprotocol_heterogeneity.py -> build/lib/xmipp3/legacy/tests 2026-02-13T00:53:44,338 copying xmipp3/legacy/tests/test_protocols_angular_resolution_alignment.py -> build/lib/xmipp3/legacy/tests 2026-02-13T00:53:44,340 copying xmipp3/legacy/tests/test_protocols_solid_angles.py -> build/lib/xmipp3/legacy/tests 2026-02-13T00:53:44,342 copying xmipp3/legacy/tests/test_protocols_mixed_movies.py -> build/lib/xmipp3/legacy/tests 2026-02-13T00:53:44,344 copying xmipp3/legacy/tests/test_protocols_gpuCorr_fullStreaming.py -> build/lib/xmipp3/legacy/tests 2026-02-13T00:53:44,346 running egg_info 2026-02-13T00:53:44,356 writing scipion_em_xmipp.egg-info/PKG-INFO 2026-02-13T00:53:44,358 writing dependency_links to scipion_em_xmipp.egg-info/dependency_links.txt 2026-02-13T00:53:44,360 writing entry points to scipion_em_xmipp.egg-info/entry_points.txt 2026-02-13T00:53:44,361 writing requirements to scipion_em_xmipp.egg-info/requires.txt 2026-02-13T00:53:44,362 writing top-level names to scipion_em_xmipp.egg-info/top_level.txt 2026-02-13T00:53:44,388 reading manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt' 2026-02-13T00:53:44,403 reading manifest template 'MANIFEST.in' 2026-02-13T00:53:44,405 adding license file 'LICENSE' 2026-02-13T00:53:44,418 writing manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt' 2026-02-13T00:53:44,428 copying xmipp3/protocols.conf -> build/lib/xmipp3 2026-02-13T00:53:44,431 copying xmipp3/xmipp_logo.png -> build/lib/xmipp3 2026-02-13T00:53:44,435 copying xmipp3/xmipp_logo_devel.png -> build/lib/xmipp3 2026-02-13T00:53:44,472 installing to build/bdist.linux-armv7l/wheel 2026-02-13T00:53:44,473 running install 2026-02-13T00:53:44,496 running install_lib 2026-02-13T00:53:44,501 creating build/bdist.linux-armv7l/wheel 2026-02-13T00:53:44,503 creating build/bdist.linux-armv7l/wheel/xmipp3 2026-02-13T00:53:44,504 copying build/lib/xmipp3/version.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-02-13T00:53:44,506 copying build/lib/xmipp3/wizards.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-02-13T00:53:44,509 creating build/bdist.linux-armv7l/wheel/xmipp3/convert 2026-02-13T00:53:44,510 copying build/lib/xmipp3/convert/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/convert 2026-02-13T00:53:44,512 copying build/lib/xmipp3/convert/convert.py -> build/bdist.linux-armv7l/wheel/./xmipp3/convert 2026-02-13T00:53:44,515 copying build/lib/xmipp3/convert/dataimport.py -> build/bdist.linux-armv7l/wheel/./xmipp3/convert 2026-02-13T00:53:44,518 copying build/lib/xmipp3/convert/io_coordinates.py -> build/bdist.linux-armv7l/wheel/./xmipp3/convert 2026-02-13T00:53:44,520 copying build/lib/xmipp3/xmipp_logo_devel.png -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-02-13T00:53:44,532 copying build/lib/xmipp3/base.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-02-13T00:53:44,535 copying build/lib/xmipp3/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-02-13T00:53:44,538 copying build/lib/xmipp3/protocols.conf -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-02-13T00:53:44,542 creating build/bdist.linux-armv7l/wheel/xmipp3/protocols 2026-02-13T00:53:44,543 copying build/lib/xmipp3/protocols/protocol_particle_pick_pairs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,546 copying build/lib/xmipp3/protocols/protocol_screen_deepConsensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,551 copying build/lib/xmipp3/protocols/protocol_align_volume_and_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,553 copying build/lib/xmipp3/protocols/protocol_apply_transformation_matrix.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,555 copying build/lib/xmipp3/protocols/protocol_center_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,558 copying build/lib/xmipp3/protocols/protocol_structure_map_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,561 copying build/lib/xmipp3/protocols/protocol_reconstruct_significant.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,565 copying build/lib/xmipp3/protocols/protocol_angular_graph_consistency.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,568 copying build/lib/xmipp3/protocols/protocol_volume_adjust_sub.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,571 copying build/lib/xmipp3/protocols/protocol_volume_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,573 copying build/lib/xmipp3/protocols/protocol_volume_local_sharpening.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,575 copying build/lib/xmipp3/protocols/protocol_mics_defocus_balancer.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,578 copying build/lib/xmipp3/protocols/protocol_assignment_tilt_pair.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,580 copying build/lib/xmipp3/protocols/protocol_random_conical_tilt.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,583 copying build/lib/xmipp3/protocols/protocol_volume_strain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,585 copying build/lib/xmipp3/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,588 copying build/lib/xmipp3/protocols/protocol_particle_pick.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,591 copying build/lib/xmipp3/protocols/protocol_preprocess_micrographs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,595 copying build/lib/xmipp3/protocols/protocol_resolution_deepres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,597 copying build/lib/xmipp3/protocols/protocol_shift_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,600 copying build/lib/xmipp3/protocols/protocol_resolution_directional.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,603 copying build/lib/xmipp3/protocols/protocol_structure_map.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,605 copying build/lib/xmipp3/protocols/protocol_break_symmetry.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,607 copying build/lib/xmipp3/protocols/protocol_classify_pca_streaming.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,610 copying build/lib/xmipp3/protocols/protocol_local_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,613 copying build/lib/xmipp3/protocols/protocol_flexalign.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,615 copying build/lib/xmipp3/protocols/protocol_particle_pick_remove_duplicates.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,618 copying build/lib/xmipp3/protocols/protocol_pick_noise.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,620 copying build/lib/xmipp3/protocols/protocol_classes_2d_mapping.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,623 copying build/lib/xmipp3/protocols/protocol_reconstruct_swarm.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,625 copying build/lib/xmipp3/protocols/protocol_cl2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,628 copying build/lib/xmipp3/protocols/protocol_ml2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,630 copying build/lib/xmipp3/protocols/protocol_validate_nontilt.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,633 copying build/lib/xmipp3/protocols/protocol_compare_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,635 copying build/lib/xmipp3/protocols/protocol_classify_pca.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,638 copying build/lib/xmipp3/protocols/protocol_multireference_alignability.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,641 copying build/lib/xmipp3/protocols/protocol_apply_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,644 copying build/lib/xmipp3/protocols/protocol_helical_parameters.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,646 copying build/lib/xmipp3/protocols/protocol_validate_overfitting.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,649 copying build/lib/xmipp3/protocols/protocol_resolution_fso.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,652 copying build/lib/xmipp3/protocols/protocol_particle_pick_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,655 copying build/lib/xmipp3/protocols/protocol_ctf_correct_phase.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,657 copying build/lib/xmipp3/protocols/protocol_tilt_analysis.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,659 copying build/lib/xmipp3/protocols/protocol_consensus_local_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,662 copying build/lib/xmipp3/protocols/protocol_shift_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,664 copying build/lib/xmipp3/protocols/protocol_compare_reprojections.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,667 copying build/lib/xmipp3/protocols/protocol_denoise_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,669 copying build/lib/xmipp3/protocols/protocol_apply_tilt_to_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,671 copying build/lib/xmipp3/protocols/protocol_screen_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,674 copying build/lib/xmipp3/protocols/protocol_extract_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,677 creating build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_preprocess 2026-02-13T00:53:44,678 copying build/lib/xmipp3/protocols/protocol_preprocess/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-02-13T00:53:44,681 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_crop_resize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-02-13T00:53:44,684 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_create_mask2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-02-13T00:53:44,686 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_image_operate.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-02-13T00:53:44,688 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_mask.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-02-13T00:53:44,691 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_create_mask3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-02-13T00:53:44,693 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_preprocess.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-02-13T00:53:44,696 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_movie_resize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-02-13T00:53:44,699 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_add_noise.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-02-13T00:53:44,701 copying build/lib/xmipp3/protocols/protocol_preprocess/geometrical_mask.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-02-13T00:53:44,704 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_filter.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-02-13T00:53:44,707 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_process.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-02-13T00:53:44,710 copying build/lib/xmipp3/protocols/protocol_core_analysis.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,712 copying build/lib/xmipp3/protocols/protocol_kerdensom.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,715 copying build/lib/xmipp3/protocols/protocol_volume_deform_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,717 copying build/lib/xmipp3/protocols/protocol_multiple_fscs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,719 copying build/lib/xmipp3/protocols/protocol_write_testC.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,721 copying build/lib/xmipp3/protocols/protocol_movie_alignment_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,724 copying build/lib/xmipp3/protocols/protocol_movie_max_shift.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,726 copying build/lib/xmipp3/protocols/protocol_movie_split_frames.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,729 copying build/lib/xmipp3/protocols/protocol_resolution3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,731 copying build/lib/xmipp3/protocols/protocol_eliminate_empty_images.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,734 copying build/lib/xmipp3/protocols/protocol_analyze_local_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,736 copying build/lib/xmipp3/protocols/protocol_apply_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,738 copying build/lib/xmipp3/protocols/protocol_extract_asymmetric_unit.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,741 copying build/lib/xmipp3/protocols/protocol_volume_local_adjust.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,743 copying build/lib/xmipp3/protocols/protocol_cl2d_clustering.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,745 copying build/lib/xmipp3/protocols/protocol_movie_gain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,748 copying build/lib/xmipp3/protocols/protocol_convert_pdb.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,750 copying build/lib/xmipp3/protocols/protocol_resolution_monogenic_signal.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,753 copying build/lib/xmipp3/protocols/protocol_phantom_create.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,755 copying build/lib/xmipp3/protocols/protocol_deep_micrograph_screen.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,758 copying build/lib/xmipp3/protocols/protocol_resolution_bfactor.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,760 copying build/lib/xmipp3/protocols/protocol_trigger_data.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,762 copying build/lib/xmipp3/protocols/protocol_create_gallery.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,765 copying build/lib/xmipp3/protocols/protocol_deep_hand.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,767 copying build/lib/xmipp3/protocols/protocol_movie_dose_analysis.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,770 copying build/lib/xmipp3/protocols/protocol_particle_pick_automatic.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,772 copying build/lib/xmipp3/protocols/protocol_extract_particles_pairs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,775 copying build/lib/xmipp3/protocols/protocol_subtract_projection.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,777 copying build/lib/xmipp3/protocols/protocol_ctf_correct_wiener2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,779 copying build/lib/xmipp3/protocols/protocol_ctf_defocus_group.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,782 copying build/lib/xmipp3/protocols/protocol_consensus_classes.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,784 copying build/lib/xmipp3/protocols/protocol_cl2d_align.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,787 copying build/lib/xmipp3/protocols/protocol_postProcessing_deepPostProcessing.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,789 copying build/lib/xmipp3/protocols/protocol_write_testP.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,791 copying build/lib/xmipp3/protocols/protocol_ransac.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,794 copying build/lib/xmipp3/protocols/protocol_generate_reprojections.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,796 copying build/lib/xmipp3/protocols/protocol_ctf_micrographs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,799 copying build/lib/xmipp3/protocols/protocol_rotate_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,801 copying build/lib/xmipp3/protocols/protocol_compute_likelihood.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,804 copying build/lib/xmipp3/protocols/protocol_reconstruct_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,809 copying build/lib/xmipp3/protocols/protocol_reconstruct_fourier.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,813 creating build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_projmatch 2026-02-13T00:53:44,814 copying build/lib/xmipp3/protocols/protocol_projmatch/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch 2026-02-13T00:53:44,817 copying build/lib/xmipp3/protocols/protocol_projmatch/projmatch_initialize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch 2026-02-13T00:53:44,820 copying build/lib/xmipp3/protocols/protocol_projmatch/protocol_projmatch.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch 2026-02-13T00:53:44,823 copying build/lib/xmipp3/protocols/protocol_projmatch/projmatch_form.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch 2026-02-13T00:53:44,826 copying build/lib/xmipp3/protocols/protocol_projmatch/projmatch_steps.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch 2026-02-13T00:53:44,830 copying build/lib/xmipp3/protocols/protocol_rotational_symmetry.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,832 copying build/lib/xmipp3/protocols/protocol_ctf_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,836 copying build/lib/xmipp3/protocols/protocol_normalize_strain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,838 copying build/lib/xmipp3/protocols/protocol_simulate_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,841 copying build/lib/xmipp3/protocols/protocol_align_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,844 copying build/lib/xmipp3/protocols/protocol_validate_fscq.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-02-13T00:53:44,847 copying build/lib/xmipp3/programs.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-02-13T00:53:44,850 copying build/lib/xmipp3/utils.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-02-13T00:53:44,853 copying build/lib/xmipp3/bibtex.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-02-13T00:53:44,856 copying build/lib/xmipp3/protocolsCollectInfo.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-02-13T00:53:44,860 creating build/bdist.linux-armv7l/wheel/xmipp3/viewers 2026-02-13T00:53:44,861 copying build/lib/xmipp3/viewers/viewer_normalize_strain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-13T00:53:44,864 copying build/lib/xmipp3/viewers/viewer_resolution3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-13T00:53:44,866 copying build/lib/xmipp3/viewers/viewer_volume_subtraction.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-13T00:53:44,869 copying build/lib/xmipp3/viewers/viewer_validate_fscq.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-13T00:53:44,872 copying build/lib/xmipp3/viewers/viewer_ml2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-13T00:53:44,874 copying build/lib/xmipp3/viewers/viewer_subtract_projection.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-13T00:53:44,877 copying build/lib/xmipp3/viewers/viewer_volume_strain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-13T00:53:44,879 copying build/lib/xmipp3/viewers/viewer_dose_analysis.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-13T00:53:44,881 copying build/lib/xmipp3/viewers/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-13T00:53:44,884 copying build/lib/xmipp3/viewers/viewer_apply_tilt_to_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-13T00:53:44,886 copying build/lib/xmipp3/viewers/viewer_ransac.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-13T00:53:44,888 copying build/lib/xmipp3/viewers/viewer_deepEMHancer.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-13T00:53:44,891 copying build/lib/xmipp3/viewers/viewer_projmatch.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-13T00:53:44,894 copying build/lib/xmipp3/viewers/viewer_resolution_fso.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-13T00:53:44,897 copying build/lib/xmipp3/viewers/viewer_validate_nontilt.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-13T00:53:44,899 copying build/lib/xmipp3/viewers/viewer_validate_overfitting.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-13T00:53:44,902 copying build/lib/xmipp3/viewers/viewer_swarm.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-13T00:53:44,904 copying build/lib/xmipp3/viewers/viewer_pdb_deform_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-13T00:53:44,906 copying build/lib/xmipp3/viewers/viewer_extract_asymmetric_unit.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-13T00:53:44,909 copying build/lib/xmipp3/viewers/viewer_resolution_monogenic_signal.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-13T00:53:44,912 copying build/lib/xmipp3/viewers/viewer_reconstruct_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-13T00:53:44,915 copying build/lib/xmipp3/viewers/viewer_structure_map.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-13T00:53:44,918 copying build/lib/xmipp3/viewers/viewer_resolution_deepres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-13T00:53:44,921 copying build/lib/xmipp3/viewers/viewer_eliminate_empty_images.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-13T00:53:44,923 copying build/lib/xmipp3/viewers/viewer_cl2d_clustering.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-13T00:53:44,926 copying build/lib/xmipp3/viewers/viewer_LL_matrix.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-13T00:53:44,929 copying build/lib/xmipp3/viewers/plotter.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-13T00:53:44,931 copying build/lib/xmipp3/viewers/viewer_analyze_local_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-13T00:53:44,934 copying build/lib/xmipp3/viewers/viewer_ctf_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-13T00:53:44,936 copying build/lib/xmipp3/viewers/viewer_volume_deform_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-13T00:53:44,939 copying build/lib/xmipp3/viewers/viewer_resolution_directional.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-13T00:53:44,942 copying build/lib/xmipp3/viewers/viewer_movie_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-13T00:53:44,945 copying build/lib/xmipp3/viewers/viewer_deep_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-13T00:53:44,947 copying build/lib/xmipp3/viewers/viewer_volume_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-13T00:53:44,950 copying build/lib/xmipp3/viewers/viewer_local_sharpening.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-13T00:53:44,952 copying build/lib/xmipp3/viewers/viewer.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-13T00:53:44,955 copying build/lib/xmipp3/viewers/viewer_deep_micrograph_cleaner.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-13T00:53:44,958 copying build/lib/xmipp3/viewers/viewer_consensus_classes.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-13T00:53:44,960 copying build/lib/xmipp3/viewers/viewer_resolution_bfactor.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-13T00:53:44,963 copying build/lib/xmipp3/viewers/viewer_cl2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-02-13T00:53:44,966 copying build/lib/xmipp3/checkProtocolsConf.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-02-13T00:53:44,968 copying build/lib/xmipp3/constants.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-02-13T00:53:44,971 creating build/bdist.linux-armv7l/wheel/xmipp3/legacy 2026-02-13T00:53:44,973 copying build/lib/xmipp3/legacy/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy 2026-02-13T00:53:44,975 creating build/bdist.linux-armv7l/wheel/xmipp3/legacy/protocols 2026-02-13T00:53:44,977 copying build/lib/xmipp3/legacy/protocols/protocol_metaprotocol_discrete_heterogeneity_scheduler.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-13T00:53:44,980 copying build/lib/xmipp3/legacy/protocols/protocol_split_volume_hierarchical_cluster.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-13T00:53:44,984 copying build/lib/xmipp3/legacy/protocols/protocol_metaprotocol_create_subset.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-13T00:53:44,986 copying build/lib/xmipp3/legacy/protocols/protocol_metaprotocol_create_output.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-13T00:53:44,989 copying build/lib/xmipp3/legacy/protocols/protocol_rotational_spectra.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-13T00:53:44,991 copying build/lib/xmipp3/legacy/protocols/protocol_classify_kmeans2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-13T00:53:44,994 copying build/lib/xmipp3/legacy/protocols/protocol_solid_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-13T00:53:44,997 copying build/lib/xmipp3/legacy/protocols/protocol_kmeans_clustering.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-13T00:53:45,000 copying build/lib/xmipp3/legacy/protocols/protocol_metaprotocol_golden_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-13T00:53:45,004 copying build/lib/xmipp3/legacy/protocols/protocol_movie_opticalflow.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-13T00:53:45,007 copying build/lib/xmipp3/legacy/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-13T00:53:45,009 copying build/lib/xmipp3/legacy/protocols/protocol_deep_center.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-13T00:53:45,011 copying build/lib/xmipp3/legacy/protocols/protocol_particle_boxsize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-13T00:53:45,014 copying build/lib/xmipp3/legacy/protocols/protocol_extract_particles_movies.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-13T00:53:45,017 copying build/lib/xmipp3/legacy/protocols/protocol_apply_deformation_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-13T00:53:45,019 copying build/lib/xmipp3/legacy/protocols/protocol_classification_gpuCorr_semi.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-13T00:53:45,022 copying build/lib/xmipp3/legacy/protocols/protocol_deep_denoising.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-13T00:53:45,025 copying build/lib/xmipp3/legacy/protocols/protocol_movie_average.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-13T00:53:45,027 copying build/lib/xmipp3/legacy/protocols/protocol_deep_align.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-13T00:53:45,031 copying build/lib/xmipp3/legacy/protocols/protocol_classification_gpuCorr.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-13T00:53:45,034 copying build/lib/xmipp3/legacy/protocols/protocol_classification_gpuCorr_full.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-13T00:53:45,037 copying build/lib/xmipp3/legacy/protocols/protocol_screen_deeplearning.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-13T00:53:45,040 copying build/lib/xmipp3/legacy/protocols/protocol_deep_center_predict.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-13T00:53:45,042 copying build/lib/xmipp3/legacy/protocols/protocol_reconstruct_heterogeneous.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-13T00:53:45,046 copying build/lib/xmipp3/legacy/protocols/protocol_angular_resolution_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-13T00:53:45,049 copying build/lib/xmipp3/legacy/protocols/protocol_enrich.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-13T00:53:45,052 copying build/lib/xmipp3/legacy/protocols/protocol_split_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-13T00:53:45,054 copying build/lib/xmipp3/legacy/protocols/protocol_subtract_projection.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-13T00:53:45,057 copying build/lib/xmipp3/legacy/protocols/protocol_mltomo.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-02-13T00:53:45,061 creating build/bdist.linux-armv7l/wheel/xmipp3/legacy/viewers 2026-02-13T00:53:45,062 copying build/lib/xmipp3/legacy/viewers/viewer_mltomo.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers 2026-02-13T00:53:45,065 copying build/lib/xmipp3/legacy/viewers/viewer_metaprotocol_golden_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers 2026-02-13T00:53:45,068 copying build/lib/xmipp3/legacy/viewers/viewer_deep_align.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers 2026-02-13T00:53:45,071 copying build/lib/xmipp3/legacy/viewers/viewer_angular_resolution_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers 2026-02-13T00:53:45,073 copying build/lib/xmipp3/legacy/viewers/viewer_solid_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers 2026-02-13T00:53:45,075 copying build/lib/xmipp3/legacy/viewers/viewer_split_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers 2026-02-13T00:53:45,077 creating build/bdist.linux-armv7l/wheel/xmipp3/legacy/tests 2026-02-13T00:53:45,079 copying build/lib/xmipp3/legacy/tests/test_protocols_gpuCorr_semiStreaming.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-02-13T00:53:45,081 copying build/lib/xmipp3/legacy/tests/test_protocols_gpuCorr_classifier.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-02-13T00:53:45,083 copying build/lib/xmipp3/legacy/tests/test_protocols_xmipp_movies.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-02-13T00:53:45,086 copying build/lib/xmipp3/legacy/tests/test_protocols_subtract_projection.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-02-13T00:53:45,088 copying build/lib/xmipp3/legacy/tests/test_protocol_deep_denoising.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-02-13T00:53:45,090 copying build/lib/xmipp3/legacy/tests/test_protocols_metaprotocol_golden_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-02-13T00:53:45,092 copying build/lib/xmipp3/legacy/tests/test_protocols_metaprotocol_heterogeneity.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-02-13T00:53:45,094 copying build/lib/xmipp3/legacy/tests/test_protocols_angular_resolution_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-02-13T00:53:45,096 copying build/lib/xmipp3/legacy/tests/test_protocols_solid_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-02-13T00:53:45,098 copying build/lib/xmipp3/legacy/tests/test_protocols_mixed_movies.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-02-13T00:53:45,100 copying build/lib/xmipp3/legacy/tests/test_protocols_gpuCorr_fullStreaming.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-02-13T00:53:45,102 copying build/lib/xmipp3/logParser.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-02-13T00:53:45,104 copying build/lib/xmipp3/xmipp_logo.png -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-02-13T00:53:45,109 creating build/bdist.linux-armv7l/wheel/xmipp3/tests 2026-02-13T00:53:45,110 copying build/lib/xmipp3/tests/test_protocol_angular_graph_consistency.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-13T00:53:45,113 copying build/lib/xmipp3/tests/test_protocol_ctf_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-13T00:53:45,115 copying build/lib/xmipp3/tests/test_protocol_consensus_classes3D.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-13T00:53:45,118 copying build/lib/xmipp3/tests/test_protocol_split_frames.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-13T00:53:45,121 copying build/lib/xmipp3/tests/test_protocol_compare_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-13T00:53:45,123 copying build/lib/xmipp3/tests/test_protocols_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-13T00:53:45,126 copying build/lib/xmipp3/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-13T00:53:45,127 copying build/lib/xmipp3/tests/test_protocols_xmipp_movies.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-13T00:53:45,130 copying build/lib/xmipp3/tests/test_protocol_monodir.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-13T00:53:45,132 copying build/lib/xmipp3/tests/test_protocols_continuousflex.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-13T00:53:45,134 copying build/lib/xmipp3/tests/test_protocols_add_noise.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-13T00:53:45,137 copying build/lib/xmipp3/tests/test_protocols_realignment_classes.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-13T00:53:45,139 copying build/lib/xmipp3/tests/test_protocols_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-13T00:53:45,142 copying build/lib/xmipp3/tests/test_protocol_multireference_alignability.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-13T00:53:45,144 copying build/lib/xmipp3/tests/test_protocols_monores.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-13T00:53:45,146 copying build/lib/xmipp3/tests/test_protocols_xmipp_2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-13T00:53:45,150 copying build/lib/xmipp3/tests/test_protocol_apply_transformation_matrix.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-13T00:53:45,153 copying build/lib/xmipp3/tests/test_protocols_deepVolPostprocessing.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-13T00:53:45,155 copying build/lib/xmipp3/tests/test_protocols_localdeblur.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-13T00:53:45,157 copying build/lib/xmipp3/tests/test_protocol_screen_deepConsensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-13T00:53:45,160 copying build/lib/xmipp3/tests/test_protocols_xmipp_mics.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-13T00:53:45,163 copying build/lib/xmipp3/tests/test_protocol_validate_overfitting.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-13T00:53:45,165 copying build/lib/xmipp3/tests/test_protocols_deepcenter_predict.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-13T00:53:45,167 copying build/lib/xmipp3/tests/test_protocol_extract_asymmetric_unit.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-13T00:53:45,170 copying build/lib/xmipp3/tests/test_protocol_reconstruct_fourier.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-13T00:53:45,172 copying build/lib/xmipp3/tests/test_protocol_likelihood.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-13T00:53:45,175 copying build/lib/xmipp3/tests/test_protocol_simulate_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-13T00:53:45,177 copying build/lib/xmipp3/tests/test_convert_xmipp.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-13T00:53:45,180 copying build/lib/xmipp3/tests/test_protocols_xmipp_movie_resize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-13T00:53:45,182 copying build/lib/xmipp3/tests/test_protocols_fso.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-13T00:53:45,184 copying build/lib/xmipp3/tests/test_protocols_local_defocus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-13T00:53:45,186 copying build/lib/xmipp3/tests/test_protocol_validate_fscq.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-13T00:53:45,189 copying build/lib/xmipp3/tests/test_protocol_multiple_fsc.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-13T00:53:45,191 copying build/lib/xmipp3/tests/test_protocols_deepres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-13T00:53:45,193 copying build/lib/xmipp3/tests/test_protocols_xmipp_3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-02-13T00:53:45,196 running install_egg_info 2026-02-13T00:53:45,202 Copying scipion_em_xmipp.egg-info to build/bdist.linux-armv7l/wheel/./scipion_em_xmipp-27.0.0-py3.11.egg-info 2026-02-13T00:53:45,214 running install_scripts 2026-02-13T00:53:45,227 creating build/bdist.linux-armv7l/wheel/scipion_em_xmipp-27.0.0.dist-info/WHEEL 2026-02-13T00:53:45,230 creating '/tmp/pip-wheel-mptcn8s5/.tmp-81_52b84/scipion_em_xmipp-27.0.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-02-13T00:53:45,238 adding 'scipion_em_xmipp-27.0.0.dist-info/licenses/LICENSE' 2026-02-13T00:53:45,241 adding 'xmipp3/__init__.py' 2026-02-13T00:53:45,244 adding 'xmipp3/base.py' 2026-02-13T00:53:45,248 adding 'xmipp3/bibtex.py' 2026-02-13T00:53:45,250 adding 'xmipp3/checkProtocolsConf.py' 2026-02-13T00:53:45,252 adding 'xmipp3/constants.py' 2026-02-13T00:53:45,253 adding 'xmipp3/logParser.py' 2026-02-13T00:53:45,256 adding 'xmipp3/programs.py' 2026-02-13T00:53:45,258 adding 'xmipp3/protocols.conf' 2026-02-13T00:53:45,260 adding 'xmipp3/protocolsCollectInfo.py' 2026-02-13T00:53:45,262 adding 'xmipp3/utils.py' 2026-02-13T00:53:45,263 adding 'xmipp3/version.py' 2026-02-13T00:53:45,265 adding 'xmipp3/wizards.py' 2026-02-13T00:53:45,277 adding 'xmipp3/xmipp_logo.png' 2026-02-13T00:53:45,367 adding 'xmipp3/xmipp_logo_devel.png' 2026-02-13T00:53:45,373 adding 'xmipp3/convert/__init__.py' 2026-02-13T00:53:45,381 adding 'xmipp3/convert/convert.py' 2026-02-13T00:53:45,383 adding 'xmipp3/convert/dataimport.py' 2026-02-13T00:53:45,385 adding 'xmipp3/convert/io_coordinates.py' 2026-02-13T00:53:45,387 adding 'xmipp3/legacy/__init__.py' 2026-02-13T00:53:45,389 adding 'xmipp3/legacy/protocols/__init__.py' 2026-02-13T00:53:45,390 adding 'xmipp3/legacy/protocols/protocol_angular_resolution_alignment.py' 2026-02-13T00:53:45,392 adding 'xmipp3/legacy/protocols/protocol_apply_deformation_zernike3d.py' 2026-02-13T00:53:45,396 adding 'xmipp3/legacy/protocols/protocol_classification_gpuCorr.py' 2026-02-13T00:53:45,401 adding 'xmipp3/legacy/protocols/protocol_classification_gpuCorr_full.py' 2026-02-13T00:53:45,403 adding 'xmipp3/legacy/protocols/protocol_classification_gpuCorr_semi.py' 2026-02-13T00:53:45,405 adding 'xmipp3/legacy/protocols/protocol_classify_kmeans2d.py' 2026-02-13T00:53:45,410 adding 'xmipp3/legacy/protocols/protocol_deep_align.py' 2026-02-13T00:53:45,411 adding 'xmipp3/legacy/protocols/protocol_deep_center.py' 2026-02-13T00:53:45,413 adding 'xmipp3/legacy/protocols/protocol_deep_center_predict.py' 2026-02-13T00:53:45,416 adding 'xmipp3/legacy/protocols/protocol_deep_denoising.py' 2026-02-13T00:53:45,418 adding 'xmipp3/legacy/protocols/protocol_enrich.py' 2026-02-13T00:53:45,421 adding 'xmipp3/legacy/protocols/protocol_extract_particles_movies.py' 2026-02-13T00:53:45,423 adding 'xmipp3/legacy/protocols/protocol_kmeans_clustering.py' 2026-02-13T00:53:45,425 adding 'xmipp3/legacy/protocols/protocol_metaprotocol_create_output.py' 2026-02-13T00:53:45,426 adding 'xmipp3/legacy/protocols/protocol_metaprotocol_create_subset.py' 2026-02-13T00:53:45,429 adding 'xmipp3/legacy/protocols/protocol_metaprotocol_discrete_heterogeneity_scheduler.py' 2026-02-13T00:53:45,432 adding 'xmipp3/legacy/protocols/protocol_metaprotocol_golden_highres.py' 2026-02-13T00:53:45,436 adding 'xmipp3/legacy/protocols/protocol_mltomo.py' 2026-02-13T00:53:45,437 adding 'xmipp3/legacy/protocols/protocol_movie_average.py' 2026-02-13T00:53:45,440 adding 'xmipp3/legacy/protocols/protocol_movie_opticalflow.py' 2026-02-13T00:53:45,442 adding 'xmipp3/legacy/protocols/protocol_particle_boxsize.py' 2026-02-13T00:53:45,447 adding 'xmipp3/legacy/protocols/protocol_reconstruct_heterogeneous.py' 2026-02-13T00:53:45,449 adding 'xmipp3/legacy/protocols/protocol_rotational_spectra.py' 2026-02-13T00:53:45,451 adding 'xmipp3/legacy/protocols/protocol_screen_deeplearning.py' 2026-02-13T00:53:45,454 adding 'xmipp3/legacy/protocols/protocol_solid_angles.py' 2026-02-13T00:53:45,456 adding 'xmipp3/legacy/protocols/protocol_split_volume.py' 2026-02-13T00:53:45,461 adding 'xmipp3/legacy/protocols/protocol_split_volume_hierarchical_cluster.py' 2026-02-13T00:53:45,463 adding 'xmipp3/legacy/protocols/protocol_subtract_projection.py' 2026-02-13T00:53:45,465 adding 'xmipp3/legacy/tests/test_protocol_deep_denoising.py' 2026-02-13T00:53:45,466 adding 'xmipp3/legacy/tests/test_protocols_angular_resolution_alignment.py' 2026-02-13T00:53:45,468 adding 'xmipp3/legacy/tests/test_protocols_gpuCorr_classifier.py' 2026-02-13T00:53:45,469 adding 'xmipp3/legacy/tests/test_protocols_gpuCorr_fullStreaming.py' 2026-02-13T00:53:45,471 adding 'xmipp3/legacy/tests/test_protocols_gpuCorr_semiStreaming.py' 2026-02-13T00:53:45,472 adding 'xmipp3/legacy/tests/test_protocols_metaprotocol_golden_highres.py' 2026-02-13T00:53:45,474 adding 'xmipp3/legacy/tests/test_protocols_metaprotocol_heterogeneity.py' 2026-02-13T00:53:45,475 adding 'xmipp3/legacy/tests/test_protocols_mixed_movies.py' 2026-02-13T00:53:45,477 adding 'xmipp3/legacy/tests/test_protocols_solid_angles.py' 2026-02-13T00:53:45,483 adding 'xmipp3/legacy/tests/test_protocols_subtract_projection.py' 2026-02-13T00:53:45,486 adding 'xmipp3/legacy/tests/test_protocols_xmipp_movies.py' 2026-02-13T00:53:45,488 adding 'xmipp3/legacy/viewers/viewer_angular_resolution_alignment.py' 2026-02-13T00:53:45,489 adding 'xmipp3/legacy/viewers/viewer_deep_align.py' 2026-02-13T00:53:45,491 adding 'xmipp3/legacy/viewers/viewer_metaprotocol_golden_highres.py' 2026-02-13T00:53:45,493 adding 'xmipp3/legacy/viewers/viewer_mltomo.py' 2026-02-13T00:53:45,495 adding 'xmipp3/legacy/viewers/viewer_solid_angles.py' 2026-02-13T00:53:45,496 adding 'xmipp3/legacy/viewers/viewer_split_volume.py' 2026-02-13T00:53:45,500 adding 'xmipp3/protocols/__init__.py' 2026-02-13T00:53:45,502 adding 'xmipp3/protocols/protocol_align_volume.py' 2026-02-13T00:53:45,504 adding 'xmipp3/protocols/protocol_align_volume_and_particles.py' 2026-02-13T00:53:45,506 adding 'xmipp3/protocols/protocol_analyze_local_ctf.py' 2026-02-13T00:53:45,509 adding 'xmipp3/protocols/protocol_angular_graph_consistency.py' 2026-02-13T00:53:45,511 adding 'xmipp3/protocols/protocol_apply_alignment.py' 2026-02-13T00:53:45,512 adding 'xmipp3/protocols/protocol_apply_tilt_to_ctf.py' 2026-02-13T00:53:45,514 adding 'xmipp3/protocols/protocol_apply_transformation_matrix.py' 2026-02-13T00:53:45,515 adding 'xmipp3/protocols/protocol_apply_zernike3d.py' 2026-02-13T00:53:45,517 adding 'xmipp3/protocols/protocol_assignment_tilt_pair.py' 2026-02-13T00:53:45,519 adding 'xmipp3/protocols/protocol_break_symmetry.py' 2026-02-13T00:53:45,521 adding 'xmipp3/protocols/protocol_center_particles.py' 2026-02-13T00:53:45,524 adding 'xmipp3/protocols/protocol_cl2d.py' 2026-02-13T00:53:45,526 adding 'xmipp3/protocols/protocol_cl2d_align.py' 2026-02-13T00:53:45,528 adding 'xmipp3/protocols/protocol_cl2d_clustering.py' 2026-02-13T00:53:45,530 adding 'xmipp3/protocols/protocol_classes_2d_mapping.py' 2026-02-13T00:53:45,533 adding 'xmipp3/protocols/protocol_classify_pca.py' 2026-02-13T00:53:45,536 adding 'xmipp3/protocols/protocol_classify_pca_streaming.py' 2026-02-13T00:53:45,538 adding 'xmipp3/protocols/protocol_compare_angles.py' 2026-02-13T00:53:45,541 adding 'xmipp3/protocols/protocol_compare_reprojections.py' 2026-02-13T00:53:45,544 adding 'xmipp3/protocols/protocol_compute_likelihood.py' 2026-02-13T00:53:45,547 adding 'xmipp3/protocols/protocol_consensus_classes.py' 2026-02-13T00:53:45,549 adding 'xmipp3/protocols/protocol_consensus_local_ctf.py' 2026-02-13T00:53:45,551 adding 'xmipp3/protocols/protocol_convert_pdb.py' 2026-02-13T00:53:45,553 adding 'xmipp3/protocols/protocol_core_analysis.py' 2026-02-13T00:53:45,555 adding 'xmipp3/protocols/protocol_create_gallery.py' 2026-02-13T00:53:45,559 adding 'xmipp3/protocols/protocol_ctf_consensus.py' 2026-02-13T00:53:45,561 adding 'xmipp3/protocols/protocol_ctf_correct_phase.py' 2026-02-13T00:53:45,562 adding 'xmipp3/protocols/protocol_ctf_correct_wiener2d.py' 2026-02-13T00:53:45,564 adding 'xmipp3/protocols/protocol_ctf_defocus_group.py' 2026-02-13T00:53:45,567 adding 'xmipp3/protocols/protocol_ctf_micrographs.py' 2026-02-13T00:53:45,569 adding 'xmipp3/protocols/protocol_deep_hand.py' 2026-02-13T00:53:45,573 adding 'xmipp3/protocols/protocol_deep_micrograph_screen.py' 2026-02-13T00:53:45,574 adding 'xmipp3/protocols/protocol_denoise_particles.py' 2026-02-13T00:53:45,577 adding 'xmipp3/protocols/protocol_eliminate_empty_images.py' 2026-02-13T00:53:45,579 adding 'xmipp3/protocols/protocol_extract_asymmetric_unit.py' 2026-02-13T00:53:45,582 adding 'xmipp3/protocols/protocol_extract_particles.py' 2026-02-13T00:53:45,586 adding 'xmipp3/protocols/protocol_extract_particles_pairs.py' 2026-02-13T00:53:45,589 adding 'xmipp3/protocols/protocol_flexalign.py' 2026-02-13T00:53:45,591 adding 'xmipp3/protocols/protocol_generate_reprojections.py' 2026-02-13T00:53:45,592 adding 'xmipp3/protocols/protocol_helical_parameters.py' 2026-02-13T00:53:45,595 adding 'xmipp3/protocols/protocol_kerdensom.py' 2026-02-13T00:53:45,596 adding 'xmipp3/protocols/protocol_local_ctf.py' 2026-02-13T00:53:45,599 adding 'xmipp3/protocols/protocol_mics_defocus_balancer.py' 2026-02-13T00:53:45,601 adding 'xmipp3/protocols/protocol_ml2d.py' 2026-02-13T00:53:45,605 adding 'xmipp3/protocols/protocol_movie_alignment_consensus.py' 2026-02-13T00:53:45,608 adding 'xmipp3/protocols/protocol_movie_dose_analysis.py' 2026-02-13T00:53:45,611 adding 'xmipp3/protocols/protocol_movie_gain.py' 2026-02-13T00:53:45,614 adding 'xmipp3/protocols/protocol_movie_max_shift.py' 2026-02-13T00:53:45,616 adding 'xmipp3/protocols/protocol_movie_split_frames.py' 2026-02-13T00:53:45,617 adding 'xmipp3/protocols/protocol_multiple_fscs.py' 2026-02-13T00:53:45,620 adding 'xmipp3/protocols/protocol_multireference_alignability.py' 2026-02-13T00:53:45,622 adding 'xmipp3/protocols/protocol_normalize_strain.py' 2026-02-13T00:53:45,623 adding 'xmipp3/protocols/protocol_particle_pick.py' 2026-02-13T00:53:45,625 adding 'xmipp3/protocols/protocol_particle_pick_automatic.py' 2026-02-13T00:53:45,628 adding 'xmipp3/protocols/protocol_particle_pick_consensus.py' 2026-02-13T00:53:45,630 adding 'xmipp3/protocols/protocol_particle_pick_pairs.py' 2026-02-13T00:53:45,631 adding 'xmipp3/protocols/protocol_particle_pick_remove_duplicates.py' 2026-02-13T00:53:45,632 adding 'xmipp3/protocols/protocol_phantom_create.py' 2026-02-13T00:53:45,634 adding 'xmipp3/protocols/protocol_pick_noise.py' 2026-02-13T00:53:45,636 adding 'xmipp3/protocols/protocol_postProcessing_deepPostProcessing.py' 2026-02-13T00:53:45,639 adding 'xmipp3/protocols/protocol_preprocess_micrographs.py' 2026-02-13T00:53:45,641 adding 'xmipp3/protocols/protocol_random_conical_tilt.py' 2026-02-13T00:53:45,645 adding 'xmipp3/protocols/protocol_ransac.py' 2026-02-13T00:53:45,647 adding 'xmipp3/protocols/protocol_reconstruct_fourier.py' 2026-02-13T00:53:45,657 adding 'xmipp3/protocols/protocol_reconstruct_highres.py' 2026-02-13T00:53:45,660 adding 'xmipp3/protocols/protocol_reconstruct_significant.py' 2026-02-13T00:53:45,664 adding 'xmipp3/protocols/protocol_reconstruct_swarm.py' 2026-02-13T00:53:45,666 adding 'xmipp3/protocols/protocol_resolution3d.py' 2026-02-13T00:53:45,667 adding 'xmipp3/protocols/protocol_resolution_bfactor.py' 2026-02-13T00:53:45,669 adding 'xmipp3/protocols/protocol_resolution_deepres.py' 2026-02-13T00:53:45,671 adding 'xmipp3/protocols/protocol_resolution_directional.py' 2026-02-13T00:53:45,673 adding 'xmipp3/protocols/protocol_resolution_fso.py' 2026-02-13T00:53:45,675 adding 'xmipp3/protocols/protocol_resolution_monogenic_signal.py' 2026-02-13T00:53:45,677 adding 'xmipp3/protocols/protocol_rotate_volume.py' 2026-02-13T00:53:45,679 adding 'xmipp3/protocols/protocol_rotational_symmetry.py' 2026-02-13T00:53:45,688 adding 'xmipp3/protocols/protocol_screen_deepConsensus.py' 2026-02-13T00:53:45,691 adding 'xmipp3/protocols/protocol_screen_particles.py' 2026-02-13T00:53:45,693 adding 'xmipp3/protocols/protocol_shift_particles.py' 2026-02-13T00:53:45,695 adding 'xmipp3/protocols/protocol_shift_volume.py' 2026-02-13T00:53:45,696 adding 'xmipp3/protocols/protocol_simulate_ctf.py' 2026-02-13T00:53:45,698 adding 'xmipp3/protocols/protocol_structure_map.py' 2026-02-13T00:53:45,701 adding 'xmipp3/protocols/protocol_structure_map_zernike3d.py' 2026-02-13T00:53:45,703 adding 'xmipp3/protocols/protocol_subtract_projection.py' 2026-02-13T00:53:45,706 adding 'xmipp3/protocols/protocol_tilt_analysis.py' 2026-02-13T00:53:45,709 adding 'xmipp3/protocols/protocol_trigger_data.py' 2026-02-13T00:53:45,712 adding 'xmipp3/protocols/protocol_validate_fscq.py' 2026-02-13T00:53:45,714 adding 'xmipp3/protocols/protocol_validate_nontilt.py' 2026-02-13T00:53:45,717 adding 'xmipp3/protocols/protocol_validate_overfitting.py' 2026-02-13T00:53:45,719 adding 'xmipp3/protocols/protocol_volume_adjust_sub.py' 2026-02-13T00:53:45,721 adding 'xmipp3/protocols/protocol_volume_consensus.py' 2026-02-13T00:53:45,723 adding 'xmipp3/protocols/protocol_volume_deform_zernike3d.py' 2026-02-13T00:53:45,725 adding 'xmipp3/protocols/protocol_volume_local_adjust.py' 2026-02-13T00:53:45,727 adding 'xmipp3/protocols/protocol_volume_local_sharpening.py' 2026-02-13T00:53:45,729 adding 'xmipp3/protocols/protocol_volume_strain.py' 2026-02-13T00:53:45,730 adding 'xmipp3/protocols/protocol_write_testC.py' 2026-02-13T00:53:45,732 adding 'xmipp3/protocols/protocol_write_testP.py' 2026-02-13T00:53:45,734 adding 'xmipp3/protocols/protocol_preprocess/__init__.py' 2026-02-13T00:53:45,736 adding 'xmipp3/protocols/protocol_preprocess/geometrical_mask.py' 2026-02-13T00:53:45,738 adding 'xmipp3/protocols/protocol_preprocess/protocol_add_noise.py' 2026-02-13T00:53:45,739 adding 'xmipp3/protocols/protocol_preprocess/protocol_create_mask2d.py' 2026-02-13T00:53:45,742 adding 'xmipp3/protocols/protocol_preprocess/protocol_create_mask3d.py' 2026-02-13T00:53:45,744 adding 'xmipp3/protocols/protocol_preprocess/protocol_crop_resize.py' 2026-02-13T00:53:45,747 adding 'xmipp3/protocols/protocol_preprocess/protocol_filter.py' 2026-02-13T00:53:45,749 adding 'xmipp3/protocols/protocol_preprocess/protocol_image_operate.py' 2026-02-13T00:53:45,751 adding 'xmipp3/protocols/protocol_preprocess/protocol_mask.py' 2026-02-13T00:53:45,753 adding 'xmipp3/protocols/protocol_preprocess/protocol_movie_resize.py' 2026-02-13T00:53:45,757 adding 'xmipp3/protocols/protocol_preprocess/protocol_preprocess.py' 2026-02-13T00:53:45,759 adding 'xmipp3/protocols/protocol_preprocess/protocol_process.py' 2026-02-13T00:53:45,760 adding 'xmipp3/protocols/protocol_projmatch/__init__.py' 2026-02-13T00:53:45,764 adding 'xmipp3/protocols/protocol_projmatch/projmatch_form.py' 2026-02-13T00:53:45,766 adding 'xmipp3/protocols/protocol_projmatch/projmatch_initialize.py' 2026-02-13T00:53:45,770 adding 'xmipp3/protocols/protocol_projmatch/projmatch_steps.py' 2026-02-13T00:53:45,773 adding 'xmipp3/protocols/protocol_projmatch/protocol_projmatch.py' 2026-02-13T00:53:45,775 adding 'xmipp3/tests/__init__.py' 2026-02-13T00:53:45,779 adding 'xmipp3/tests/test_convert_xmipp.py' 2026-02-13T00:53:45,781 adding 'xmipp3/tests/test_protocol_angular_graph_consistency.py' 2026-02-13T00:53:45,782 adding 'xmipp3/tests/test_protocol_apply_transformation_matrix.py' 2026-02-13T00:53:45,784 adding 'xmipp3/tests/test_protocol_compare_angles.py' 2026-02-13T00:53:45,785 adding 'xmipp3/tests/test_protocol_consensus_classes3D.py' 2026-02-13T00:53:45,787 adding 'xmipp3/tests/test_protocol_ctf_consensus.py' 2026-02-13T00:53:45,790 adding 'xmipp3/tests/test_protocol_extract_asymmetric_unit.py' 2026-02-13T00:53:45,791 adding 'xmipp3/tests/test_protocol_likelihood.py' 2026-02-13T00:53:45,793 adding 'xmipp3/tests/test_protocol_monodir.py' 2026-02-13T00:53:45,794 adding 'xmipp3/tests/test_protocol_multiple_fsc.py' 2026-02-13T00:53:45,796 adding 'xmipp3/tests/test_protocol_multireference_alignability.py' 2026-02-13T00:53:45,797 adding 'xmipp3/tests/test_protocol_reconstruct_fourier.py' 2026-02-13T00:53:45,799 adding 'xmipp3/tests/test_protocol_screen_deepConsensus.py' 2026-02-13T00:53:45,801 adding 'xmipp3/tests/test_protocol_simulate_ctf.py' 2026-02-13T00:53:45,802 adding 'xmipp3/tests/test_protocol_split_frames.py' 2026-02-13T00:53:45,803 adding 'xmipp3/tests/test_protocol_validate_fscq.py' 2026-02-13T00:53:45,805 adding 'xmipp3/tests/test_protocol_validate_overfitting.py' 2026-02-13T00:53:45,806 adding 'xmipp3/tests/test_protocols_add_noise.py' 2026-02-13T00:53:45,808 adding 'xmipp3/tests/test_protocols_continuousflex.py' 2026-02-13T00:53:45,810 adding 'xmipp3/tests/test_protocols_deepVolPostprocessing.py' 2026-02-13T00:53:45,811 adding 'xmipp3/tests/test_protocols_deepcenter_predict.py' 2026-02-13T00:53:45,812 adding 'xmipp3/tests/test_protocols_deepres.py' 2026-02-13T00:53:45,814 adding 'xmipp3/tests/test_protocols_fso.py' 2026-02-13T00:53:45,815 adding 'xmipp3/tests/test_protocols_highres.py' 2026-02-13T00:53:45,817 adding 'xmipp3/tests/test_protocols_local_defocus.py' 2026-02-13T00:53:45,819 adding 'xmipp3/tests/test_protocols_localdeblur.py' 2026-02-13T00:53:45,820 adding 'xmipp3/tests/test_protocols_monores.py' 2026-02-13T00:53:45,822 adding 'xmipp3/tests/test_protocols_realignment_classes.py' 2026-02-13T00:53:45,829 adding 'xmipp3/tests/test_protocols_xmipp_2d.py' 2026-02-13T00:53:45,837 adding 'xmipp3/tests/test_protocols_xmipp_3d.py' 2026-02-13T00:53:45,843 adding 'xmipp3/tests/test_protocols_xmipp_mics.py' 2026-02-13T00:53:45,845 adding 'xmipp3/tests/test_protocols_xmipp_movie_resize.py' 2026-02-13T00:53:45,847 adding 'xmipp3/tests/test_protocols_xmipp_movies.py' 2026-02-13T00:53:45,850 adding 'xmipp3/tests/test_protocols_zernike3d.py' 2026-02-13T00:53:45,853 adding 'xmipp3/viewers/__init__.py' 2026-02-13T00:53:45,854 adding 'xmipp3/viewers/plotter.py' 2026-02-13T00:53:45,856 adding 'xmipp3/viewers/viewer.py' 2026-02-13T00:53:45,858 adding 'xmipp3/viewers/viewer_LL_matrix.py' 2026-02-13T00:53:45,859 adding 'xmipp3/viewers/viewer_analyze_local_ctf.py' 2026-02-13T00:53:45,861 adding 'xmipp3/viewers/viewer_apply_tilt_to_ctf.py' 2026-02-13T00:53:45,862 adding 'xmipp3/viewers/viewer_cl2d.py' 2026-02-13T00:53:45,864 adding 'xmipp3/viewers/viewer_cl2d_clustering.py' 2026-02-13T00:53:45,865 adding 'xmipp3/viewers/viewer_consensus_classes.py' 2026-02-13T00:53:45,867 adding 'xmipp3/viewers/viewer_ctf_consensus.py' 2026-02-13T00:53:45,869 adding 'xmipp3/viewers/viewer_deepEMHancer.py' 2026-02-13T00:53:45,870 adding 'xmipp3/viewers/viewer_deep_consensus.py' 2026-02-13T00:53:45,872 adding 'xmipp3/viewers/viewer_deep_micrograph_cleaner.py' 2026-02-13T00:53:45,873 adding 'xmipp3/viewers/viewer_dose_analysis.py' 2026-02-13T00:53:45,875 adding 'xmipp3/viewers/viewer_eliminate_empty_images.py' 2026-02-13T00:53:45,877 adding 'xmipp3/viewers/viewer_extract_asymmetric_unit.py' 2026-02-13T00:53:45,878 adding 'xmipp3/viewers/viewer_local_sharpening.py' 2026-02-13T00:53:45,880 adding 'xmipp3/viewers/viewer_ml2d.py' 2026-02-13T00:53:45,881 adding 'xmipp3/viewers/viewer_movie_alignment.py' 2026-02-13T00:53:45,883 adding 'xmipp3/viewers/viewer_normalize_strain.py' 2026-02-13T00:53:45,884 adding 'xmipp3/viewers/viewer_pdb_deform_zernike3d.py' 2026-02-13T00:53:45,888 adding 'xmipp3/viewers/viewer_projmatch.py' 2026-02-13T00:53:45,890 adding 'xmipp3/viewers/viewer_ransac.py' 2026-02-13T00:53:45,892 adding 'xmipp3/viewers/viewer_reconstruct_highres.py' 2026-02-13T00:53:45,894 adding 'xmipp3/viewers/viewer_resolution3d.py' 2026-02-13T00:53:45,895 adding 'xmipp3/viewers/viewer_resolution_bfactor.py' 2026-02-13T00:53:45,897 adding 'xmipp3/viewers/viewer_resolution_deepres.py' 2026-02-13T00:53:45,900 adding 'xmipp3/viewers/viewer_resolution_directional.py' 2026-02-13T00:53:45,902 adding 'xmipp3/viewers/viewer_resolution_fso.py' 2026-02-13T00:53:45,904 adding 'xmipp3/viewers/viewer_resolution_monogenic_signal.py' 2026-02-13T00:53:45,907 adding 'xmipp3/viewers/viewer_structure_map.py' 2026-02-13T00:53:45,909 adding 'xmipp3/viewers/viewer_subtract_projection.py' 2026-02-13T00:53:45,910 adding 'xmipp3/viewers/viewer_swarm.py' 2026-02-13T00:53:45,912 adding 'xmipp3/viewers/viewer_validate_fscq.py' 2026-02-13T00:53:45,914 adding 'xmipp3/viewers/viewer_validate_nontilt.py' 2026-02-13T00:53:45,915 adding 'xmipp3/viewers/viewer_validate_overfitting.py' 2026-02-13T00:53:45,917 adding 'xmipp3/viewers/viewer_volume_consensus.py' 2026-02-13T00:53:45,918 adding 'xmipp3/viewers/viewer_volume_deform_zernike3d.py' 2026-02-13T00:53:45,920 adding 'xmipp3/viewers/viewer_volume_strain.py' 2026-02-13T00:53:45,921 adding 'xmipp3/viewers/viewer_volume_subtraction.py' 2026-02-13T00:53:45,923 adding 'scipion_em_xmipp-27.0.0.dist-info/METADATA' 2026-02-13T00:53:45,924 adding 'scipion_em_xmipp-27.0.0.dist-info/WHEEL' 2026-02-13T00:53:45,924 adding 'scipion_em_xmipp-27.0.0.dist-info/entry_points.txt' 2026-02-13T00:53:45,925 adding 'scipion_em_xmipp-27.0.0.dist-info/top_level.txt' 2026-02-13T00:53:45,930 adding 'scipion_em_xmipp-27.0.0.dist-info/RECORD' 2026-02-13T00:53:45,954 removing build/bdist.linux-armv7l/wheel 2026-02-13T00:53:46,126 Building wheel for scipion-em-xmipp (pyproject.toml): finished with status 'done' 2026-02-13T00:53:46,181 Created wheel for scipion-em-xmipp: filename=scipion_em_xmipp-27.0.0-py3-none-any.whl size=1808918 sha256=9ab8e04d914b8d403e549a205f050d4aa5f6f6d13fa99c7ad1434cdb50cb09a5 2026-02-13T00:53:46,183 Stored in directory: /tmp/pip-ephem-wheel-cache-5_rueto7/wheels/32/8b/fb/ba7e67b9fb3d257135f0506a655010e4089f6e15ae4c650254 2026-02-13T00:53:46,200 Successfully built scipion-em-xmipp 2026-02-13T00:53:46,228 Removed build tracker: '/tmp/pip-build-tracker-zu3__kyp'