2026-02-13T02:21:23,620 Created temporary directory: /tmp/pip-ephem-wheel-cache-90mx_w64 2026-02-13T02:21:23,622 Created temporary directory: /tmp/pip-build-tracker-jppjwl68 2026-02-13T02:21:23,623 Initialized build tracking at /tmp/pip-build-tracker-jppjwl68 2026-02-13T02:21:23,623 Created build tracker: /tmp/pip-build-tracker-jppjwl68 2026-02-13T02:21:23,623 Entered build tracker: /tmp/pip-build-tracker-jppjwl68 2026-02-13T02:21:23,624 Created temporary directory: /tmp/pip-wheel-ijg7r8jr 2026-02-13T02:21:23,627 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-02-13T02:21:23,630 Created temporary directory: /tmp/pip-ephem-wheel-cache-z1ki46ab 2026-02-13T02:21:23,651 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-02-13T02:21:23,655 2 location(s) to search for versions of epi2melabs: 2026-02-13T02:21:23,655 * https://pypi.org/simple/epi2melabs/ 2026-02-13T02:21:23,655 * https://www.piwheels.org/simple/epi2melabs/ 2026-02-13T02:21:23,655 Fetching project page and analyzing links: https://pypi.org/simple/epi2melabs/ 2026-02-13T02:21:23,656 Getting page https://pypi.org/simple/epi2melabs/ 2026-02-13T02:21:23,658 Found index url https://pypi.org/simple 2026-02-13T02:21:23,873 Fetched page https://pypi.org/simple/epi2melabs/ as application/vnd.pypi.simple.v1+json 2026-02-13T02:21:23,885 Found link https://files.pythonhosted.org/packages/c9/81/fc08397b377b1f6bb9abb82ac1297732add601b3f9366d75d9538c143cfa/epi2melabs-0.0.1.tar.gz (from 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https://pypi.org/simple/epi2melabs/) (requires-python:>=3.8), version: 0.0.57 2026-02-13T02:21:23,932 Found link https://files.pythonhosted.org/packages/51/e2/c7a92f66a79f2b5780bc4b3c22f78d760d0dbad72f982143269493ae94ad/epi2melabs-0.0.58.tar.gz (from https://pypi.org/simple/epi2melabs/) (requires-python:>=3.8), version: 0.0.58 2026-02-13T02:21:23,933 Found link https://files.pythonhosted.org/packages/6d/ab/474fb6bfc7f07451d99e70fd7e59662a42ed32e3852ea53f635e5551207a/epi2melabs-0.0.59.tar.gz (from https://pypi.org/simple/epi2melabs/) (requires-python:>=3.8), version: 0.0.59 2026-02-13T02:21:23,934 Found link https://files.pythonhosted.org/packages/7c/98/a09e67a598b36c624f33cd40820fa44c25833635487bc0815f93df57d134/epi2melabs-0.0.60.tar.gz (from https://pypi.org/simple/epi2melabs/) (requires-python:>=3.8), version: 0.0.60 2026-02-13T02:21:23,935 Found link https://files.pythonhosted.org/packages/99/1f/b8cd03c85bcfbc3fbe3ad2b1bcd3f2093613f66fcd0e3621c4ac5eea8886/epi2melabs-0.0.61.tar.gz (from https://pypi.org/simple/epi2melabs/) (requires-python:>=3.8), version: 0.0.61 2026-02-13T02:21:23,936 Found link https://files.pythonhosted.org/packages/7e/c6/83f672c3a2c52ae7d61234196e9533321fc29efed51e5e218c92be359845/epi2melabs-0.0.62.tar.gz (from https://pypi.org/simple/epi2melabs/) (requires-python:>=3.8), version: 0.0.62 2026-02-13T02:21:23,937 Fetching project page and analyzing links: https://www.piwheels.org/simple/epi2melabs/ 2026-02-13T02:21:23,938 Getting page https://www.piwheels.org/simple/epi2melabs/ 2026-02-13T02:21:23,939 Found index url https://www.piwheels.org/simple 2026-02-13T02:21:24,100 Fetched page https://www.piwheels.org/simple/epi2melabs/ as text/html 2026-02-13T02:21:24,117 Skipping link: No binaries permitted for epi2melabs: https://www.piwheels.org/simple/epi2melabs/epi2melabs-0.0.61-py3-none-any.whl#sha256=1dcd41eb32fae847a7753af454216bb28d5f1684652e21f559fd3df42201ce1f (from https://www.piwheels.org/simple/epi2melabs/) (requires-python:>=3.8) 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https://archive1.piwheels.org/simple/epi2melabs/epi2melabs-0.0.9-py3-none-any.whl#sha256=3ff6f9853cdedb369c704185dddcb632d40e0243d54df606e8c4ef65e644624b (from https://www.piwheels.org/simple/epi2melabs/) 2026-02-13T02:21:24,149 Skipping link: No binaries permitted for epi2melabs: https://archive1.piwheels.org/simple/epi2melabs/epi2melabs-0.0.8-py3-none-any.whl#sha256=081cacdc81551490687fa0eecd48c34d6c62a8eadf341f503ca4764ba1b630b2 (from https://www.piwheels.org/simple/epi2melabs/) 2026-02-13T02:21:24,150 Skipping link: No binaries permitted for epi2melabs: https://archive1.piwheels.org/simple/epi2melabs/epi2melabs-0.0.7-py3-none-any.whl#sha256=f42847917ab96fe706bec49ec44adc40cfb5b20d8d37e0649106c4577f0d53e2 (from https://www.piwheels.org/simple/epi2melabs/) 2026-02-13T02:21:24,150 Skipping link: No binaries permitted for epi2melabs: https://archive1.piwheels.org/simple/epi2melabs/epi2melabs-0.0.6-py3-none-any.whl#sha256=6d70b580b0f7cdf7acf5490bd5200e9dbafdd83c3354febcf9406f1554a5cd06 (from https://www.piwheels.org/simple/epi2melabs/) 2026-02-13T02:21:24,151 Skipping link: No binaries permitted for epi2melabs: https://archive1.piwheels.org/simple/epi2melabs/epi2melabs-0.0.5-py3-none-any.whl#sha256=99be897155dd318ca4fd8548440e54d2d11723efac436db1f514d08ee0a902f9 (from https://www.piwheels.org/simple/epi2melabs/) 2026-02-13T02:21:24,151 Skipping link: No binaries permitted for epi2melabs: https://archive1.piwheels.org/simple/epi2melabs/epi2melabs-0.0.4-py3-none-any.whl#sha256=a228685cd9969d207ff1276e0858662e13696e6d42e5c302d40d048a80b52ae1 (from https://www.piwheels.org/simple/epi2melabs/) 2026-02-13T02:21:24,151 Skipping link: No binaries permitted for epi2melabs: https://archive1.piwheels.org/simple/epi2melabs/epi2melabs-0.0.3-py3-none-any.whl#sha256=010df4476c76401c2f40b1dd3bce839a9282474a1bf02b91be7d8650a8311039 (from https://www.piwheels.org/simple/epi2melabs/) 2026-02-13T02:21:24,152 Skipping link: No binaries permitted for epi2melabs: https://archive1.piwheels.org/simple/epi2melabs/epi2melabs-0.0.2-py3-none-any.whl#sha256=c0054d5f22e07f23a80da8203b54146bcd6bfe7625642e73e12e05618d429c39 (from https://www.piwheels.org/simple/epi2melabs/) 2026-02-13T02:21:24,153 Skipping link: No binaries permitted for epi2melabs: https://archive1.piwheels.org/simple/epi2melabs/epi2melabs-0.0.1-py3-none-any.whl#sha256=2e7a134f7c128bf952087fae4e794f6e5e23d942372f6caac63e907cbf3113a6 (from https://www.piwheels.org/simple/epi2melabs/) 2026-02-13T02:21:24,153 Skipping link: not a file: https://www.piwheels.org/simple/epi2melabs/ 2026-02-13T02:21:24,154 Skipping link: not a file: https://pypi.org/simple/epi2melabs/ 2026-02-13T02:21:24,182 Given no hashes to check 1 links for project 'epi2melabs': discarding no candidates 2026-02-13T02:21:24,201 Collecting epi2melabs==0.0.62 2026-02-13T02:21:24,204 Created temporary directory: /tmp/pip-unpack-hj2s81y8 2026-02-13T02:21:24,339 Downloading epi2melabs-0.0.62.tar.gz (29 kB) 2026-02-13T02:21:24,414 Added epi2melabs==0.0.62 from https://files.pythonhosted.org/packages/7e/c6/83f672c3a2c52ae7d61234196e9533321fc29efed51e5e218c92be359845/epi2melabs-0.0.62.tar.gz to build tracker '/tmp/pip-build-tracker-jppjwl68' 2026-02-13T02:21:24,416 Running setup.py (path:/tmp/pip-wheel-ijg7r8jr/epi2melabs_0a40b581254944c6bb97f2909052b5a8/setup.py) egg_info for package epi2melabs 2026-02-13T02:21:24,417 Created temporary directory: /tmp/pip-pip-egg-info-pklvol8n 2026-02-13T02:21:24,417 Preparing metadata (setup.py): started 2026-02-13T02:21:24,418 Running command python setup.py egg_info 2026-02-13T02:21:24,987 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:287: UserWarning: Unknown distribution option: 'tests_require' 2026-02-13T02:21:24,988 warnings.warn(msg) 2026-02-13T02:21:25,326 running egg_info 2026-02-13T02:21:25,353 creating /tmp/pip-pip-egg-info-pklvol8n/epi2melabs.egg-info 2026-02-13T02:21:25,355 writing /tmp/pip-pip-egg-info-pklvol8n/epi2melabs.egg-info/PKG-INFO 2026-02-13T02:21:25,358 writing dependency_links to /tmp/pip-pip-egg-info-pklvol8n/epi2melabs.egg-info/dependency_links.txt 2026-02-13T02:21:25,360 writing entry points to /tmp/pip-pip-egg-info-pklvol8n/epi2melabs.egg-info/entry_points.txt 2026-02-13T02:21:25,362 writing requirements to /tmp/pip-pip-egg-info-pklvol8n/epi2melabs.egg-info/requires.txt 2026-02-13T02:21:25,363 writing top-level names to /tmp/pip-pip-egg-info-pklvol8n/epi2melabs.egg-info/top_level.txt 2026-02-13T02:21:25,365 writing manifest file '/tmp/pip-pip-egg-info-pklvol8n/epi2melabs.egg-info/SOURCES.txt' 2026-02-13T02:21:25,481 reading manifest file '/tmp/pip-pip-egg-info-pklvol8n/epi2melabs.egg-info/SOURCES.txt' 2026-02-13T02:21:25,483 reading manifest template 'MANIFEST.in' 2026-02-13T02:21:25,484 adding license file 'LICENSE.md' 2026-02-13T02:21:25,487 writing manifest file '/tmp/pip-pip-egg-info-pklvol8n/epi2melabs.egg-info/SOURCES.txt' 2026-02-13T02:21:25,595 Preparing metadata (setup.py): finished with status 'done' 2026-02-13T02:21:25,599 Source in /tmp/pip-wheel-ijg7r8jr/epi2melabs_0a40b581254944c6bb97f2909052b5a8 has version 0.0.62, which satisfies requirement epi2melabs==0.0.62 from https://files.pythonhosted.org/packages/7e/c6/83f672c3a2c52ae7d61234196e9533321fc29efed51e5e218c92be359845/epi2melabs-0.0.62.tar.gz 2026-02-13T02:21:25,600 Removed epi2melabs==0.0.62 from https://files.pythonhosted.org/packages/7e/c6/83f672c3a2c52ae7d61234196e9533321fc29efed51e5e218c92be359845/epi2melabs-0.0.62.tar.gz from build tracker '/tmp/pip-build-tracker-jppjwl68' 2026-02-13T02:21:25,606 Created temporary directory: /tmp/pip-unpack-f7_qmbyr 2026-02-13T02:21:25,607 Building wheels for collected packages: epi2melabs 2026-02-13T02:21:25,611 Created temporary directory: /tmp/pip-wheel-lzape2pi 2026-02-13T02:21:25,612 Building wheel for epi2melabs (setup.py): started 2026-02-13T02:21:25,613 Destination directory: /tmp/pip-wheel-lzape2pi 2026-02-13T02:21:25,614 Running command python setup.py bdist_wheel 2026-02-13T02:21:26,158 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:287: UserWarning: Unknown distribution option: 'tests_require' 2026-02-13T02:21:26,158 warnings.warn(msg) 2026-02-13T02:21:26,455 running bdist_wheel 2026-02-13T02:21:26,590 running build 2026-02-13T02:21:26,591 running build_py 2026-02-13T02:21:26,624 creating build/lib/epi2melabs 2026-02-13T02:21:26,626 copying epi2melabs/__init__.py -> build/lib/epi2melabs 2026-02-13T02:21:26,628 copying epi2melabs/ping.py -> build/lib/epi2melabs 2026-02-13T02:21:26,631 copying epi2melabs/notebook.py -> build/lib/epi2melabs 2026-02-13T02:21:26,634 creating build/lib/epi2melabs/workflows 2026-02-13T02:21:26,635 copying epi2melabs/workflows/__init__.py -> build/lib/epi2melabs/workflows 2026-02-13T02:21:26,637 copying epi2melabs/workflows/invoke.py -> build/lib/epi2melabs/workflows 2026-02-13T02:21:26,640 copying epi2melabs/workflows/launcher.py -> build/lib/epi2melabs/workflows 2026-02-13T02:21:26,643 copying epi2melabs/workflows/database.py -> build/lib/epi2melabs/workflows 2026-02-13T02:21:26,645 copying epi2melabs/workflows/docs.py -> build/lib/epi2melabs/workflows 2026-02-13T02:21:26,649 running build_scripts 2026-02-13T02:21:26,650 creating build/scripts-3.11 2026-02-13T02:21:26,652 copying scripts/concatenate_fastqs -> build/scripts-3.11 2026-02-13T02:21:26,654 copying scripts/rationalise_fastq -> build/scripts-3.11 2026-02-13T02:21:26,657 copying scripts/rationalize_fastq -> build/scripts-3.11 2026-02-13T02:21:26,659 copying scripts/run -> build/scripts-3.11 2026-02-13T02:21:26,662 copying scripts/seqkit_bam_yaml -> build/scripts-3.11 2026-02-13T02:21:26,693 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2026-02-13T02:21:26,694 !! 2026-02-13T02:21:26,695 ******************************************************************************** 2026-02-13T02:21:26,696 Please avoid running ``setup.py`` directly. 2026-02-13T02:21:26,697 Instead, use pypa/build, pypa/installer or other 2026-02-13T02:21:26,697 standards-based tools. 2026-02-13T02:21:26,699 This deprecation is overdue, please update your project and remove deprecated 2026-02-13T02:21:26,699 calls to avoid build errors in the future. 2026-02-13T02:21:26,700 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2026-02-13T02:21:26,701 ******************************************************************************** 2026-02-13T02:21:26,702 !! 2026-02-13T02:21:26,702 self.initialize_options() 2026-02-13T02:21:26,722 installing to build/bdist.linux-armv7l/wheel 2026-02-13T02:21:26,723 running install 2026-02-13T02:21:26,746 running install_lib 2026-02-13T02:21:26,774 creating build/bdist.linux-armv7l/wheel 2026-02-13T02:21:26,776 creating build/bdist.linux-armv7l/wheel/epi2melabs 2026-02-13T02:21:26,778 copying build/lib/epi2melabs/__init__.py -> build/bdist.linux-armv7l/wheel/./epi2melabs 2026-02-13T02:21:26,780 creating build/bdist.linux-armv7l/wheel/epi2melabs/workflows 2026-02-13T02:21:26,781 copying build/lib/epi2melabs/workflows/__init__.py -> build/bdist.linux-armv7l/wheel/./epi2melabs/workflows 2026-02-13T02:21:26,784 copying build/lib/epi2melabs/workflows/invoke.py -> build/bdist.linux-armv7l/wheel/./epi2melabs/workflows 2026-02-13T02:21:26,786 copying build/lib/epi2melabs/workflows/launcher.py -> build/bdist.linux-armv7l/wheel/./epi2melabs/workflows 2026-02-13T02:21:26,789 copying build/lib/epi2melabs/workflows/database.py -> build/bdist.linux-armv7l/wheel/./epi2melabs/workflows 2026-02-13T02:21:26,791 copying build/lib/epi2melabs/workflows/docs.py -> build/bdist.linux-armv7l/wheel/./epi2melabs/workflows 2026-02-13T02:21:26,794 copying build/lib/epi2melabs/ping.py -> build/bdist.linux-armv7l/wheel/./epi2melabs 2026-02-13T02:21:26,796 copying build/lib/epi2melabs/notebook.py -> build/bdist.linux-armv7l/wheel/./epi2melabs 2026-02-13T02:21:26,798 running install_egg_info 2026-02-13T02:21:26,833 running egg_info 2026-02-13T02:21:26,861 writing epi2melabs.egg-info/PKG-INFO 2026-02-13T02:21:26,864 writing dependency_links to epi2melabs.egg-info/dependency_links.txt 2026-02-13T02:21:26,866 writing entry points to epi2melabs.egg-info/entry_points.txt 2026-02-13T02:21:26,868 writing requirements to epi2melabs.egg-info/requires.txt 2026-02-13T02:21:26,869 writing top-level names to epi2melabs.egg-info/top_level.txt 2026-02-13T02:21:26,900 reading manifest file 'epi2melabs.egg-info/SOURCES.txt' 2026-02-13T02:21:26,903 reading manifest template 'MANIFEST.in' 2026-02-13T02:21:26,904 adding license file 'LICENSE.md' 2026-02-13T02:21:26,908 writing manifest file 'epi2melabs.egg-info/SOURCES.txt' 2026-02-13T02:21:26,909 Copying epi2melabs.egg-info to build/bdist.linux-armv7l/wheel/./epi2melabs-0.0.62-py3.11.egg-info 2026-02-13T02:21:26,924 running install_scripts 2026-02-13T02:21:26,925 creating build/bdist.linux-armv7l/wheel/epi2melabs-0.0.62.data/scripts 2026-02-13T02:21:26,927 copying build/scripts-3.11/seqkit_bam_yaml -> build/bdist.linux-armv7l/wheel/epi2melabs-0.0.62.data/scripts 2026-02-13T02:21:26,929 copying build/scripts-3.11/concatenate_fastqs -> build/bdist.linux-armv7l/wheel/epi2melabs-0.0.62.data/scripts 2026-02-13T02:21:26,931 copying build/scripts-3.11/run -> build/bdist.linux-armv7l/wheel/epi2melabs-0.0.62.data/scripts 2026-02-13T02:21:26,933 copying build/scripts-3.11/rationalize_fastq -> build/bdist.linux-armv7l/wheel/epi2melabs-0.0.62.data/scripts 2026-02-13T02:21:26,935 copying build/scripts-3.11/rationalise_fastq -> build/bdist.linux-armv7l/wheel/epi2melabs-0.0.62.data/scripts 2026-02-13T02:21:26,937 changing mode of build/bdist.linux-armv7l/wheel/epi2melabs-0.0.62.data/scripts/seqkit_bam_yaml to 755 2026-02-13T02:21:26,938 changing mode of build/bdist.linux-armv7l/wheel/epi2melabs-0.0.62.data/scripts/concatenate_fastqs to 755 2026-02-13T02:21:26,938 changing mode of build/bdist.linux-armv7l/wheel/epi2melabs-0.0.62.data/scripts/run to 755 2026-02-13T02:21:26,939 changing mode of build/bdist.linux-armv7l/wheel/epi2melabs-0.0.62.data/scripts/rationalize_fastq to 755 2026-02-13T02:21:26,939 changing mode of build/bdist.linux-armv7l/wheel/epi2melabs-0.0.62.data/scripts/rationalise_fastq to 755 2026-02-13T02:21:26,954 creating build/bdist.linux-armv7l/wheel/epi2melabs-0.0.62.dist-info/WHEEL 2026-02-13T02:21:26,957 creating '/tmp/pip-wheel-lzape2pi/epi2melabs-0.0.62-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-02-13T02:21:26,959 adding 'epi2melabs/__init__.py' 2026-02-13T02:21:26,961 adding 'epi2melabs/notebook.py' 2026-02-13T02:21:26,963 adding 'epi2melabs/ping.py' 2026-02-13T02:21:26,965 adding 'epi2melabs/workflows/__init__.py' 2026-02-13T02:21:26,966 adding 'epi2melabs/workflows/database.py' 2026-02-13T02:21:26,969 adding 'epi2melabs/workflows/docs.py' 2026-02-13T02:21:26,971 adding 'epi2melabs/workflows/invoke.py' 2026-02-13T02:21:26,975 adding 'epi2melabs/workflows/launcher.py' 2026-02-13T02:21:26,977 adding 'epi2melabs-0.0.62.data/scripts/concatenate_fastqs' 2026-02-13T02:21:26,979 adding 'epi2melabs-0.0.62.data/scripts/rationalise_fastq' 2026-02-13T02:21:26,980 adding 'epi2melabs-0.0.62.data/scripts/rationalize_fastq' 2026-02-13T02:21:26,981 adding 'epi2melabs-0.0.62.data/scripts/run' 2026-02-13T02:21:26,983 adding 'epi2melabs-0.0.62.data/scripts/seqkit_bam_yaml' 2026-02-13T02:21:26,987 adding 'epi2melabs-0.0.62.dist-info/licenses/LICENSE.md' 2026-02-13T02:21:26,988 adding 'epi2melabs-0.0.62.dist-info/METADATA' 2026-02-13T02:21:26,989 adding 'epi2melabs-0.0.62.dist-info/WHEEL' 2026-02-13T02:21:26,990 adding 'epi2melabs-0.0.62.dist-info/entry_points.txt' 2026-02-13T02:21:26,991 adding 'epi2melabs-0.0.62.dist-info/top_level.txt' 2026-02-13T02:21:26,992 adding 'epi2melabs-0.0.62.dist-info/RECORD' 2026-02-13T02:21:26,994 removing build/bdist.linux-armv7l/wheel 2026-02-13T02:21:27,110 Building wheel for epi2melabs (setup.py): finished with status 'done' 2026-02-13T02:21:27,113 Created wheel for epi2melabs: filename=epi2melabs-0.0.62-py3-none-any.whl size=32548 sha256=9d714a87aea8eb2025e95e7b9ad219698c4932550fb0208813bbd4c9bf9c82fc 2026-02-13T02:21:27,114 Stored in directory: /tmp/pip-ephem-wheel-cache-z1ki46ab/wheels/33/93/08/6622e355fa76024af550384a0ade843f6036b7bd84e81e3c03 2026-02-13T02:21:27,126 Successfully built epi2melabs 2026-02-13T02:21:27,131 Removed build tracker: '/tmp/pip-build-tracker-jppjwl68'