2026-02-13T03:53:07,305 Created temporary directory: /tmp/pip-build-tracker-v4l3c2_f 2026-02-13T03:53:07,306 Initialized build tracking at /tmp/pip-build-tracker-v4l3c2_f 2026-02-13T03:53:07,306 Created build tracker: /tmp/pip-build-tracker-v4l3c2_f 2026-02-13T03:53:07,306 Entered build tracker: /tmp/pip-build-tracker-v4l3c2_f 2026-02-13T03:53:07,306 Created temporary directory: /tmp/pip-wheel-lj6ejhtk 2026-02-13T03:53:07,310 Created temporary directory: /tmp/pip-ephem-wheel-cache-9sykwv41 2026-02-13T03:53:07,369 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-02-13T03:53:07,371 2 location(s) to search for versions of kssdtree: 2026-02-13T03:53:07,371 * https://pypi.org/simple/kssdtree/ 2026-02-13T03:53:07,371 * https://www.piwheels.org/simple/kssdtree/ 2026-02-13T03:53:07,371 Fetching project page and analyzing links: https://pypi.org/simple/kssdtree/ 2026-02-13T03:53:07,372 Getting page https://pypi.org/simple/kssdtree/ 2026-02-13T03:53:07,373 Found index url https://pypi.org/simple/ 2026-02-13T03:53:07,523 Fetched page https://pypi.org/simple/kssdtree/ as application/vnd.pypi.simple.v1+json 2026-02-13T03:53:07,529 Found link https://files.pythonhosted.org/packages/d5/1e/9e5c5945a44bb40002d1c259f734a531999fa6e87db89fe7c7ddcfc583cc/kssdtree-1.1.1.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.1 2026-02-13T03:53:07,529 Found link https://files.pythonhosted.org/packages/9a/4c/6516f734f5860e4b30f9091aaac5811663bfae72c4de4ae6566c89192767/kssdtree-1.1.2.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.2 2026-02-13T03:53:07,530 Found link https://files.pythonhosted.org/packages/a4/cd/f2954686c636e853cc3fda197c459195377b78288874cf7d68218a8bdbf4/kssdtree-1.1.3.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.3 2026-02-13T03:53:07,530 Found link https://files.pythonhosted.org/packages/20/ea/b0301924e3f7d367cbb7b8da66837dba9af2a332bf56ed35e03a33faee76/kssdtree-1.1.4.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.4 2026-02-13T03:53:07,531 Found link https://files.pythonhosted.org/packages/41/65/ed35110b84bc0dd02b9add0104f10160754d2ea0882191767d512146a884/kssdtree-1.1.6.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.6 2026-02-13T03:53:07,531 Found link https://files.pythonhosted.org/packages/cd/4b/d886cbcc573ff0969da7d9c756049925b86141e60ee6708dfbbe0644d008/kssdtree-1.1.7.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.7 2026-02-13T03:53:07,532 Found link https://files.pythonhosted.org/packages/7e/8a/a62c8adc92df69ab8cb242827ee64a3e2b6d5c89b83425785dd00605af17/kssdtree-1.1.8.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.8 2026-02-13T03:53:07,532 Found link https://files.pythonhosted.org/packages/da/db/e458cca6427752c05428d2378ccdee631d32f760174fdaba65f73125e71b/kssdtree-1.1.9.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.9 2026-02-13T03:53:07,533 Found link https://files.pythonhosted.org/packages/9d/47/017180a30e73e421372377cbe6d01c5e51a5108ea2177f20ccd7d283f8d1/kssdtree-2.0.0.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.0 2026-02-13T03:53:07,533 Found link https://files.pythonhosted.org/packages/ba/39/d443cac955912a0371c93b797311cb9ec3a8d6ee0a5d7673376d826aa6b2/kssdtree-2.0.1.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.1 2026-02-13T03:53:07,534 Found link https://files.pythonhosted.org/packages/2e/32/e53c0e3735cbc913b2c96b4e0e1c1005fe816a4d71b38b80cdcfb5c67fa8/kssdtree-2.0.2.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.2 2026-02-13T03:53:07,534 Found link https://files.pythonhosted.org/packages/c0/0f/effc10c8e76dbe3b9a35a4b4d9e65a0a889ee805e10334541c3ca7ae3b94/kssdtree-2.0.3.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.3 2026-02-13T03:53:07,534 Found link https://files.pythonhosted.org/packages/fc/8d/d3790baa2f2f0a01c913005b94a82dc13ef601e7015e662ccff94bb1b458/kssdtree-2.0.4.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.4 2026-02-13T03:53:07,535 Found link https://files.pythonhosted.org/packages/b5/f8/19480a4c57704944f973ebf534f9582054949cca20170a33c6f874974440/kssdtree-2.0.5.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.5 2026-02-13T03:53:07,535 Found link https://files.pythonhosted.org/packages/46/ef/2d920d5d2fceded48c7add363e04f49ae85414bcd4360e1295d6fddc4a24/kssdtree-2.0.6.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.6 2026-02-13T03:53:07,536 Found link https://files.pythonhosted.org/packages/9c/1c/c6b3f05465d145856ac992328bd59e776286a59b120254620c1dbffcf67f/kssdtree-2.0.7.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.7 2026-02-13T03:53:07,536 Found link https://files.pythonhosted.org/packages/82/9b/dac2af6572f0c4421e5ba8341dcfddac466de30c62acfa019d9ef70b2670/kssdtree-2.0.8.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.8 2026-02-13T03:53:07,537 Found link https://files.pythonhosted.org/packages/41/14/6350a913694cb9af7e5d542e566286c28d7a96c0b257bf7e19e8cc0400d0/kssdtree-2.0.9.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.9 2026-02-13T03:53:07,537 Found link https://files.pythonhosted.org/packages/2d/27/624f3bdd2bb038c3095130be4908ff39cae2e05bdb693b709b1c87a463ec/kssdtree-2.1.0.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.1.0 2026-02-13T03:53:07,538 Fetching project page and analyzing links: https://www.piwheels.org/simple/kssdtree/ 2026-02-13T03:53:07,539 Getting page https://www.piwheels.org/simple/kssdtree/ 2026-02-13T03:53:07,540 Found index url https://www.piwheels.org/simple/ 2026-02-13T03:53:07,632 Fetched page https://www.piwheels.org/simple/kssdtree/ as text/html 2026-02-13T03:53:07,647 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-2.1.0-cp311-cp311-linux_armv6l.whl#sha256=169d23da665645c804665ee8db85ae8198a3f174255c0726286c29a0f454e68e (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,647 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-2.1.0-cp311-cp311-linux_armv7l.whl#sha256=169d23da665645c804665ee8db85ae8198a3f174255c0726286c29a0f454e68e (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,648 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.8-cp311-cp311-linux_armv6l.whl#sha256=af8a0b06198bfd1ce24b078cdad070d5c587b126973ade98efa6ab13b9c2fc32 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,648 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.8-cp311-cp311-linux_armv7l.whl#sha256=af8a0b06198bfd1ce24b078cdad070d5c587b126973ade98efa6ab13b9c2fc32 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,648 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.8-cp39-cp39-linux_armv6l.whl#sha256=fb6f717dcadeee1974e114645ccfca55bc46eb4f46872cea71acc544102be042 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,648 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.8-cp39-cp39-linux_armv7l.whl#sha256=fb6f717dcadeee1974e114645ccfca55bc46eb4f46872cea71acc544102be042 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,648 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.7-cp311-cp311-linux_armv6l.whl#sha256=f267901a8f679be9a77fc090fb1c15f5144a295e5158a4ff2e62e2ba29fec967 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,648 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.7-cp311-cp311-linux_armv7l.whl#sha256=f267901a8f679be9a77fc090fb1c15f5144a295e5158a4ff2e62e2ba29fec967 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,649 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.7-cp39-cp39-linux_armv6l.whl#sha256=27677e716e6d66163d5aa6b6f09a6aaae97d4a8cf4882e9eab54b93800cc3ea8 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,649 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.7-cp39-cp39-linux_armv7l.whl#sha256=27677e716e6d66163d5aa6b6f09a6aaae97d4a8cf4882e9eab54b93800cc3ea8 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,649 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.6-cp311-cp311-linux_armv6l.whl#sha256=e1e02281e0fc8ed3b80b596a811ca2a9b50cb7affb3649479228d59c074c1f94 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,649 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.6-cp311-cp311-linux_armv7l.whl#sha256=e1e02281e0fc8ed3b80b596a811ca2a9b50cb7affb3649479228d59c074c1f94 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,649 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.6-cp39-cp39-linux_armv6l.whl#sha256=6cc8e863f6316aa656790c5fc8a7bb42bbb33d4db4a6256f3e30131b023d5e41 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,649 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.6-cp39-cp39-linux_armv7l.whl#sha256=6cc8e863f6316aa656790c5fc8a7bb42bbb33d4db4a6256f3e30131b023d5e41 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,649 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.5-cp311-cp311-linux_armv6l.whl#sha256=cecf3000ed0ffcd720412023d8de2f213356363c01aa3193441c040ed34353d3 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,650 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.5-cp311-cp311-linux_armv7l.whl#sha256=cecf3000ed0ffcd720412023d8de2f213356363c01aa3193441c040ed34353d3 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,650 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.5-cp39-cp39-linux_armv6l.whl#sha256=db08595adc89347b61965ba36e918055e8a0dc5f6a2b0bdfe16133eb363412d3 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,650 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.5-cp39-cp39-linux_armv7l.whl#sha256=db08595adc89347b61965ba36e918055e8a0dc5f6a2b0bdfe16133eb363412d3 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,650 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.4-cp311-cp311-linux_armv6l.whl#sha256=97a69f799c2d1b7024a9033b8a1e3fc17af4748a1ed726f52397d884303eb870 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,650 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.4-cp311-cp311-linux_armv7l.whl#sha256=97a69f799c2d1b7024a9033b8a1e3fc17af4748a1ed726f52397d884303eb870 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,650 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.4-cp39-cp39-linux_armv6l.whl#sha256=00938a03bead64e58bc1928832b7952b04d844e79b41da12160490c7edbb9e9f (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,650 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.4-cp39-cp39-linux_armv7l.whl#sha256=00938a03bead64e58bc1928832b7952b04d844e79b41da12160490c7edbb9e9f (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,651 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.3-cp311-cp311-linux_armv6l.whl#sha256=d70b4b00c6bf4ff5b294b9ad2594aa1e32981df4b9869be9d13aafa0ff614bc3 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,651 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.3-cp311-cp311-linux_armv7l.whl#sha256=d70b4b00c6bf4ff5b294b9ad2594aa1e32981df4b9869be9d13aafa0ff614bc3 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,651 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.3-cp39-cp39-linux_armv6l.whl#sha256=f629766f3426bb8a83c6f4adca8b02b03cb85452c129c9694cef65efd715fabd (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,651 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.3-cp39-cp39-linux_armv7l.whl#sha256=f629766f3426bb8a83c6f4adca8b02b03cb85452c129c9694cef65efd715fabd (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,651 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.2-cp311-cp311-linux_armv6l.whl#sha256=ae7417e30efd12d8c6800d4167141c94a93f1ce51afd5ae9196cdfb6057ca7d2 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,651 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.2-cp311-cp311-linux_armv7l.whl#sha256=ae7417e30efd12d8c6800d4167141c94a93f1ce51afd5ae9196cdfb6057ca7d2 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,652 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.2-cp39-cp39-linux_armv6l.whl#sha256=599ca3576cae9c0ef5ce475baaee98faa1478f8fd034062ddf88f823c9c91b10 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,652 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.2-cp39-cp39-linux_armv7l.whl#sha256=599ca3576cae9c0ef5ce475baaee98faa1478f8fd034062ddf88f823c9c91b10 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,652 Skipping link: No binaries permitted for kssdtree: 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https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.0-cp311-cp311-linux_armv7l.whl#sha256=16a2e46376ed2874435371fd57a97405d4b631b35c014b9e395a4528a1e655b8 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,652 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.0-cp39-cp39-linux_armv6l.whl#sha256=131de046d905a575216e4344f66d988df06c39a828f970e791ab2dd8ce7c204c (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,653 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.0-cp39-cp39-linux_armv7l.whl#sha256=131de046d905a575216e4344f66d988df06c39a828f970e791ab2dd8ce7c204c (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,653 Skipping link: No binaries permitted for kssdtree: 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https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.9-cp39-cp39-linux_armv7l.whl#sha256=ab11dc15aca2923fe0d60bf11deb134bed4df89280b4ce40ca8e9bf3ca46b168 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,653 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.8-cp39-cp39-linux_armv6l.whl#sha256=6b3f5b0e827056c7b589f4fb02c353408efa5892ef4df1c8a54b4cb30331754a (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,653 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.8-cp39-cp39-linux_armv7l.whl#sha256=6b3f5b0e827056c7b589f4fb02c353408efa5892ef4df1c8a54b4cb30331754a (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,654 Skipping link: No binaries permitted for kssdtree: 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https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp311-cp311-linux_armv6l.whl#sha256=0901b6cf3efb240d5d32b1e88a8863f28e2986a2c0749886421c643b98a4aec2 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,655 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp311-cp311-linux_armv7l.whl#sha256=0901b6cf3efb240d5d32b1e88a8863f28e2986a2c0749886421c643b98a4aec2 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,655 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp39-cp39-linux_armv6l.whl#sha256=9defb70b5162efc2c0eb6e415a7e37c604aa9b248a006af86af8f59a3bce5d2b (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,655 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp39-cp39-linux_armv7l.whl#sha256=9defb70b5162efc2c0eb6e415a7e37c604aa9b248a006af86af8f59a3bce5d2b (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,655 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp37-cp37m-linux_armv6l.whl#sha256=ffef4ae0f634dd977cc2ec6798b9f36f73d788aca27bb7199f552d5513c34413 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,655 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp37-cp37m-linux_armv7l.whl#sha256=ffef4ae0f634dd977cc2ec6798b9f36f73d788aca27bb7199f552d5513c34413 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,655 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp311-cp311-linux_armv6l.whl#sha256=64b685362c3f9027bfeafdffb6a5d58c349a76fd551eeb7b98de146827463e75 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,655 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp311-cp311-linux_armv7l.whl#sha256=64b685362c3f9027bfeafdffb6a5d58c349a76fd551eeb7b98de146827463e75 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,656 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp39-cp39-linux_armv6l.whl#sha256=34527068d84569095aefee41a353c5dfc0dfa55b68097890da9a1eca2ee9b726 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,656 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp39-cp39-linux_armv7l.whl#sha256=34527068d84569095aefee41a353c5dfc0dfa55b68097890da9a1eca2ee9b726 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,656 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp311-cp311-linux_armv6l.whl#sha256=6b76f3b3f532934ad49a829e7bf8176af580f4687f1491c49c3f571bf081f961 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,656 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp311-cp311-linux_armv7l.whl#sha256=6b76f3b3f532934ad49a829e7bf8176af580f4687f1491c49c3f571bf081f961 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,656 Skipping link: No binaries permitted for kssdtree: 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https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp39-cp39-linux_armv7l.whl#sha256=6df2298fa80eefa823153fa0b9db67e35da72da7f88c5949f4f637872ff22c3b (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,657 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp311-cp311-linux_armv6l.whl#sha256=146b572fde14b0d0770e1c1cd90870ad6db4af293ade814fed7a49e3857f1444 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,657 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp311-cp311-linux_armv7l.whl#sha256=146b572fde14b0d0770e1c1cd90870ad6db4af293ade814fed7a49e3857f1444 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,657 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp37-cp37m-linux_armv6l.whl#sha256=8c0cc1974033765d6eeefdb635a506385b5f38e00361bd6de47ff1a83b07e12a (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,657 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp37-cp37m-linux_armv7l.whl#sha256=8c0cc1974033765d6eeefdb635a506385b5f38e00361bd6de47ff1a83b07e12a (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,657 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp39-cp39-linux_armv6l.whl#sha256=9f3fe3d3b4b4bde8b34a8f964ebde72f1efcc7833b9a0b34f6b9c8ff3ed595db (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,657 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp39-cp39-linux_armv7l.whl#sha256=9f3fe3d3b4b4bde8b34a8f964ebde72f1efcc7833b9a0b34f6b9c8ff3ed595db (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,658 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp311-cp311-linux_armv6l.whl#sha256=29b8e7f4a3e60084db855e6d587231253771ad57184a3265922d659512e136fb (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,658 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp311-cp311-linux_armv7l.whl#sha256=29b8e7f4a3e60084db855e6d587231253771ad57184a3265922d659512e136fb (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,658 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp37-cp37m-linux_armv6l.whl#sha256=34b00b40f17a95b2cc5cbabd880acc2c56996457b0acd265cace6966c10b9575 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,658 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp37-cp37m-linux_armv7l.whl#sha256=34b00b40f17a95b2cc5cbabd880acc2c56996457b0acd265cace6966c10b9575 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,658 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp39-cp39-linux_armv6l.whl#sha256=04471408d60c00f568404b1ab01ca89567b36a1aa50ef6041aceef07ed1e45f4 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,658 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp39-cp39-linux_armv7l.whl#sha256=04471408d60c00f568404b1ab01ca89567b36a1aa50ef6041aceef07ed1e45f4 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:07,659 Skipping link: not a file: https://www.piwheels.org/simple/kssdtree/ 2026-02-13T03:53:07,659 Skipping link: not a file: https://pypi.org/simple/kssdtree/ 2026-02-13T03:53:07,684 Given no hashes to check 1 links for project 'kssdtree': discarding no candidates 2026-02-13T03:53:07,685 Collecting kssdtree==2.0.9 2026-02-13T03:53:07,687 Created temporary directory: /tmp/pip-unpack-koz6s2dr 2026-02-13T03:53:07,755 Downloading kssdtree-2.0.9.tar.gz (114 kB) 2026-02-13T03:53:07,853 Added kssdtree==2.0.9 from https://files.pythonhosted.org/packages/41/14/6350a913694cb9af7e5d542e566286c28d7a96c0b257bf7e19e8cc0400d0/kssdtree-2.0.9.tar.gz to build tracker '/tmp/pip-build-tracker-v4l3c2_f' 2026-02-13T03:53:07,854 Running setup.py (path:/tmp/pip-wheel-lj6ejhtk/kssdtree_9b301641b1cf4fbbb8732e27cdddd503/setup.py) egg_info for package kssdtree 2026-02-13T03:53:07,855 Created temporary directory: /tmp/pip-pip-egg-info-kvdzsueg 2026-02-13T03:53:07,855 Preparing metadata (setup.py): started 2026-02-13T03:53:07,856 Running command python setup.py egg_info 2026-02-13T03:53:09,357 running egg_info 2026-02-13T03:53:09,434 creating /tmp/pip-pip-egg-info-kvdzsueg/kssdtree.egg-info 2026-02-13T03:53:09,434 writing /tmp/pip-pip-egg-info-kvdzsueg/kssdtree.egg-info/PKG-INFO 2026-02-13T03:53:09,435 writing dependency_links to /tmp/pip-pip-egg-info-kvdzsueg/kssdtree.egg-info/dependency_links.txt 2026-02-13T03:53:09,436 writing requirements to /tmp/pip-pip-egg-info-kvdzsueg/kssdtree.egg-info/requires.txt 2026-02-13T03:53:09,436 writing top-level names to /tmp/pip-pip-egg-info-kvdzsueg/kssdtree.egg-info/top_level.txt 2026-02-13T03:53:09,436 writing manifest file '/tmp/pip-pip-egg-info-kvdzsueg/kssdtree.egg-info/SOURCES.txt' 2026-02-13T03:53:09,666 reading manifest file '/tmp/pip-pip-egg-info-kvdzsueg/kssdtree.egg-info/SOURCES.txt' 2026-02-13T03:53:09,667 reading manifest template 'MANIFEST.in' 2026-02-13T03:53:09,674 writing manifest file '/tmp/pip-pip-egg-info-kvdzsueg/kssdtree.egg-info/SOURCES.txt' 2026-02-13T03:53:09,788 Preparing metadata (setup.py): finished with status 'done' 2026-02-13T03:53:09,793 Source in /tmp/pip-wheel-lj6ejhtk/kssdtree_9b301641b1cf4fbbb8732e27cdddd503 has version 2.0.9, which satisfies requirement kssdtree==2.0.9 from https://files.pythonhosted.org/packages/41/14/6350a913694cb9af7e5d542e566286c28d7a96c0b257bf7e19e8cc0400d0/kssdtree-2.0.9.tar.gz 2026-02-13T03:53:09,793 Removed kssdtree==2.0.9 from https://files.pythonhosted.org/packages/41/14/6350a913694cb9af7e5d542e566286c28d7a96c0b257bf7e19e8cc0400d0/kssdtree-2.0.9.tar.gz from build tracker '/tmp/pip-build-tracker-v4l3c2_f' 2026-02-13T03:53:09,797 Created temporary directory: /tmp/pip-unpack-hn_amgkw 2026-02-13T03:53:09,797 Created temporary directory: /tmp/pip-unpack-ppo0hkj3 2026-02-13T03:53:09,797 Building wheels for collected packages: kssdtree 2026-02-13T03:53:09,798 Created temporary directory: /tmp/pip-wheel-obse4v9_ 2026-02-13T03:53:09,799 DEPRECATION: Building 'kssdtree' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'kssdtree'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2026-02-13T03:53:09,800 Building wheel for kssdtree (setup.py): started 2026-02-13T03:53:09,801 Destination directory: /tmp/pip-wheel-obse4v9_ 2026-02-13T03:53:09,801 Running command python setup.py bdist_wheel 2026-02-13T03:53:10,891 running bdist_wheel 2026-02-13T03:53:11,200 running build 2026-02-13T03:53:11,200 running build_py 2026-02-13T03:53:11,516 creating build/lib.linux-armv7l-cpython-313 2026-02-13T03:53:11,516 copying kssdtree.py -> build/lib.linux-armv7l-cpython-313 2026-02-13T03:53:11,517 copying toolutils.py -> build/lib.linux-armv7l-cpython-313 2026-02-13T03:53:11,517 running egg_info 2026-02-13T03:53:11,594 writing kssdtree.egg-info/PKG-INFO 2026-02-13T03:53:11,596 writing dependency_links to kssdtree.egg-info/dependency_links.txt 2026-02-13T03:53:11,596 writing requirements to kssdtree.egg-info/requires.txt 2026-02-13T03:53:11,596 writing top-level names to kssdtree.egg-info/top_level.txt 2026-02-13T03:53:11,673 reading manifest file 'kssdtree.egg-info/SOURCES.txt' 2026-02-13T03:53:11,677 reading manifest template 'MANIFEST.in' 2026-02-13T03:53:11,684 writing manifest file 'kssdtree.egg-info/SOURCES.txt' 2026-02-13T03:53:11,685 running build_ext 2026-02-13T03:53:12,172 building 'kssd' extension 2026-02-13T03:53:12,174 creating build/temp.linux-armv7l-cpython-313 2026-02-13T03:53:12,175 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c co2mco.c -o build/temp.linux-armv7l-cpython-313/co2mco.o -fopenmp 2026-02-13T03:53:12,344 co2mco.c: In function ‘cdb_kmerf2kmerdb’: 2026-02-13T03:53:12,344 co2mco.c:109:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2026-02-13T03:53:12,344 109 | for (unsigned int i = 0; i < comp_num; i++) { 2026-02-13T03:53:12,345 | ^ 2026-02-13T03:53:12,348 co2mco.c: In function ‘co2unitllmco’: 2026-02-13T03:53:12,349 co2mco.c:191:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2026-02-13T03:53:12,349 191 | for (unsigned int i = 0; i < bin_sz; i++) { 2026-02-13T03:53:12,349 | ^ 2026-02-13T03:53:13,032 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_composite.c -o build/temp.linux-armv7l-cpython-313/command_composite.o -fopenmp 2026-02-13T03:53:13,413 command_composite.c: In function ‘get_species_abundance’: 2026-02-13T03:53:13,413 command_composite.c:32:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2026-02-13T03:53:13,413 32 | if (ref_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, ref_dstat_fpath); 2026-02-13T03:53:13,413 | ^~ 2026-02-13T03:53:13,413 command_composite.c:34:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2026-02-13T03:53:13,413 34 | if (qry_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, qry_dstat_fpath); 2026-02-13T03:53:13,413 | ^~ 2026-02-13T03:53:13,414 command_composite.c:64:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:13,414 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2026-02-13T03:53:13,414 | ^ 2026-02-13T03:53:13,414 command_composite.c:64:31: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:13,414 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2026-02-13T03:53:13,414 | ^~~~~~~~~~ 2026-02-13T03:53:13,414 command_composite.c:64:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2026-02-13T03:53:13,414 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2026-02-13T03:53:13,414 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:13,414 command_composite.c:70:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:13,414 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2026-02-13T03:53:13,415 | ^ 2026-02-13T03:53:13,415 command_composite.c:70:31: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:13,415 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2026-02-13T03:53:13,415 | ^~~~~~~~~~ 2026-02-13T03:53:13,415 command_composite.c:70:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2026-02-13T03:53:13,415 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2026-02-13T03:53:13,415 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:13,415 command_composite.c:76:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:13,415 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2026-02-13T03:53:13,415 | ^ 2026-02-13T03:53:13,416 command_composite.c:76:31: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:13,416 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2026-02-13T03:53:13,416 | ^~~~~~~~~~ 2026-02-13T03:53:13,416 command_composite.c:76:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2026-02-13T03:53:13,416 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2026-02-13T03:53:13,416 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:13,416 command_composite.c:82:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:13,416 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2026-02-13T03:53:13,416 | ^ 2026-02-13T03:53:13,416 command_composite.c:82:31: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:13,417 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2026-02-13T03:53:13,417 | ^~~~~~~~~~ 2026-02-13T03:53:13,417 command_composite.c:82:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2026-02-13T03:53:13,417 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2026-02-13T03:53:13,417 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:13,417 command_composite.c:88:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:13,417 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2026-02-13T03:53:13,417 | ^ 2026-02-13T03:53:13,417 command_composite.c:88:31: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:13,417 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2026-02-13T03:53:13,418 | ^~~~~~~~~~~~ 2026-02-13T03:53:13,418 command_composite.c:88:13: note: ‘sprintf’ output 6 or more bytes (assuming 271) into a destination of size 256 2026-02-13T03:53:13,418 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2026-02-13T03:53:13,418 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:13,662 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_dist.c -o build/temp.linux-armv7l-cpython-313/command_dist.o -fopenmp 2026-02-13T03:53:13,895 command_dist.c: In function ‘mco_cbd_co_dist’: 2026-02-13T03:53:13,897 command_dist.c:677:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-02-13T03:53:13,897 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2026-02-13T03:53:13,897 | ~~^ 2026-02-13T03:53:13,897 | | 2026-02-13T03:53:13,897 | long unsigned int 2026-02-13T03:53:13,898 | %u 2026-02-13T03:53:13,898 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2026-02-13T03:53:13,898 | ~~~~~~~ 2026-02-13T03:53:13,898 | | 2026-02-13T03:53:13,898 | size_t {aka unsigned int} 2026-02-13T03:53:13,899 command_dist.c:677:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-02-13T03:53:13,899 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2026-02-13T03:53:13,899 | ~~^ 2026-02-13T03:53:13,899 | | 2026-02-13T03:53:13,900 | long unsigned int 2026-02-13T03:53:13,900 | %u 2026-02-13T03:53:13,900 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2026-02-13T03:53:13,900 679 | maplength, (size_t) b * unitsz_distf_mapped); 2026-02-13T03:53:13,900 | ~~~~~~~~~ 2026-02-13T03:53:13,900 | | 2026-02-13T03:53:13,900 | size_t {aka unsigned int} 2026-02-13T03:53:13,901 command_dist.c:677:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2026-02-13T03:53:13,901 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2026-02-13T03:53:13,901 | ~~^ 2026-02-13T03:53:13,901 | | 2026-02-13T03:53:13,902 | long unsigned int 2026-02-13T03:53:13,902 | %u 2026-02-13T03:53:13,902 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2026-02-13T03:53:13,902 679 | maplength, (size_t) b * unitsz_distf_mapped); 2026-02-13T03:53:13,902 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:13,902 | | 2026-02-13T03:53:13,902 | unsigned int 2026-02-13T03:53:13,904 command_dist.c:715:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2026-02-13T03:53:13,904 715 | for (int n = 0; n < fco_pos[k + 1] - fco_pos[k]; n++) { 2026-02-13T03:53:13,905 | ^ 2026-02-13T03:53:13,911 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2026-02-13T03:53:13,914 command_dist.c:863:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-02-13T03:53:13,914 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2026-02-13T03:53:13,914 | ~~^ ~~~~~~~ 2026-02-13T03:53:13,914 | | | 2026-02-13T03:53:13,914 | long unsigned int size_t {aka unsigned int} 2026-02-13T03:53:13,914 | %u 2026-02-13T03:53:13,916 command_dist.c:863:93: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-02-13T03:53:13,916 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2026-02-13T03:53:13,916 | ~~^ 2026-02-13T03:53:13,916 | | 2026-02-13T03:53:13,916 | long unsigned int 2026-02-13T03:53:13,917 | %u 2026-02-13T03:53:13,917 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2026-02-13T03:53:13,917 | ~~~~~~~~~ 2026-02-13T03:53:13,917 | | 2026-02-13T03:53:13,917 | size_t {aka unsigned int} 2026-02-13T03:53:13,919 command_dist.c:863:98: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2026-02-13T03:53:13,919 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2026-02-13T03:53:13,919 | ~~^ 2026-02-13T03:53:13,919 | | 2026-02-13T03:53:13,919 | long unsigned int 2026-02-13T03:53:13,919 | %u 2026-02-13T03:53:13,919 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2026-02-13T03:53:13,919 865 | (size_t) b * unitsz_distf_mapped); 2026-02-13T03:53:13,919 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:13,919 | | 2026-02-13T03:53:13,920 | unsigned int 2026-02-13T03:53:13,921 command_dist.c:810:13: warning: unused variable ‘fco_pos’ [-Wunused-variable] 2026-02-13T03:53:13,922 810 | size_t *fco_pos = malloc(sizeof(size_t) * (co_dstat_readin.infile_num + 1)); 2026-02-13T03:53:13,922 | ^~~~~~~ 2026-02-13T03:53:13,922 command_dist.c:809:17: warning: unused variable ‘cbd_fcode_stat’ [-Wunused-variable] 2026-02-13T03:53:13,922 809 | struct stat cbd_fcode_stat; 2026-02-13T03:53:13,923 | ^~~~~~~~~~~~~~ 2026-02-13T03:53:13,923 command_dist.c:808:31: warning: unused variable ‘cbd_fcode_comp_index_fp’ [-Wunused-variable] 2026-02-13T03:53:13,923 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2026-02-13T03:53:13,924 | ^~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:13,924 command_dist.c:808:11: warning: unused variable ‘cbd_fcode_comp_fp’ [-Wunused-variable] 2026-02-13T03:53:13,924 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2026-02-13T03:53:13,925 | ^~~~~~~~~~~~~~~~~ 2026-02-13T03:53:13,931 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2026-02-13T03:53:13,934 command_dist.c:1018:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-02-13T03:53:13,934 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2026-02-13T03:53:13,934 | ~~^ 2026-02-13T03:53:13,934 | | 2026-02-13T03:53:13,934 | long unsigned int 2026-02-13T03:53:13,934 | %u 2026-02-13T03:53:13,934 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2026-02-13T03:53:13,934 | ~~~~~~~ 2026-02-13T03:53:13,934 | | 2026-02-13T03:53:13,934 | size_t {aka unsigned int} 2026-02-13T03:53:13,936 command_dist.c:1018:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-02-13T03:53:13,937 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2026-02-13T03:53:13,937 | ~~^ 2026-02-13T03:53:13,937 | | 2026-02-13T03:53:13,937 | long unsigned int 2026-02-13T03:53:13,937 | %u 2026-02-13T03:53:13,937 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2026-02-13T03:53:13,937 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2026-02-13T03:53:13,937 | ~~~~~~~~~ 2026-02-13T03:53:13,937 | | 2026-02-13T03:53:13,937 | size_t {aka unsigned int} 2026-02-13T03:53:13,939 command_dist.c:1018:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2026-02-13T03:53:13,939 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2026-02-13T03:53:13,940 | ~~^ 2026-02-13T03:53:13,940 | | 2026-02-13T03:53:13,940 | long unsigned int 2026-02-13T03:53:13,940 | %u 2026-02-13T03:53:13,940 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2026-02-13T03:53:13,940 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2026-02-13T03:53:13,940 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:13,940 | | 2026-02-13T03:53:13,940 | unsigned int 2026-02-13T03:53:13,945 command_dist.c: In function ‘mco_co_dist_core’: 2026-02-13T03:53:13,946 command_dist.c:1116:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘gidobj_t’ {aka ‘unsigned int’} [-Wsign-compare] 2026-02-13T03:53:13,946 1116 | for (int k = 1; k < unit_arrmco[ind][0] + 1; k++) { 2026-02-13T03:53:13,946 | ^ 2026-02-13T03:53:13,948 command_dist.c: In function ‘fname_dist_print’: 2026-02-13T03:53:13,949 command_dist.c:1163:25: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘__off64_t’ {aka ‘long long int’} [-Wsign-compare] 2026-02-13T03:53:13,949 1163 | for (llong i = 0; i < s.st_size / sizeof(ctx_obj_ct_t); i++) { 2026-02-13T03:53:13,949 | ^ 2026-02-13T03:53:13,954 command_dist.c: In function ‘koc_dist_print_nobin’: 2026-02-13T03:53:13,955 command_dist.c:1239:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2026-02-13T03:53:13,955 1239 | for (int rid = 0; rid < ref_num; rid++) 2026-02-13T03:53:13,956 | ^ 2026-02-13T03:53:13,958 command_dist.c:1245:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2026-02-13T03:53:13,958 1245 | for (int rid = 0; rid < ref_num; rid++) { 2026-02-13T03:53:13,958 | ^ 2026-02-13T03:53:13,964 command_dist.c: In function ‘dist_print_nobin’: 2026-02-13T03:53:13,965 command_dist.c:1335:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2026-02-13T03:53:13,965 1335 | if ((N_max > NREF) || (N_max > ref_num)) { 2026-02-13T03:53:13,965 | ^ 2026-02-13T03:53:13,968 command_dist.c:1356:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2026-02-13T03:53:13,968 1356 | for (int rid = 0; rid < ref_num; rid++) { 2026-02-13T03:53:13,968 | ^ 2026-02-13T03:53:13,971 command_dist.c:1382:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2026-02-13T03:53:13,971 1382 | for (int rid = 0; rid < ref_num; rid++) 2026-02-13T03:53:13,971 | ^ 2026-02-13T03:53:14,360 command_dist.c: In function ‘run_stageI._omp_fn.1’: 2026-02-13T03:53:14,360 command_dist.c:403:21: warning: ‘com_abund_fp’ may be used uninitialized [-Wmaybe-uninitialized] 2026-02-13T03:53:14,360 403 | fwrite(tmp_mem, sizeof(unsigned short) * tmpkmerct, 1, com_abund_fp); 2026-02-13T03:53:14,360 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:14,361 command_dist.c:375:40: note: ‘com_abund_fp’ was declared here 2026-02-13T03:53:14,361 375 | FILE *com_cofp, *indexfp, *com_abund_fp; 2026-02-13T03:53:14,361 | ^~~~~~~~~~~~ 2026-02-13T03:53:15,164 command_dist.c: In function ‘get_dim_shuffle’: 2026-02-13T03:53:15,165 command_dist.c:267:36: warning: ‘%s’ directive writing up to 264 bytes into a region of size 256 [-Wformat-overflow=] 2026-02-13T03:53:15,165 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2026-02-13T03:53:15,165 | ^~ ~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:15,165 command_dist.c:267:9: note: ‘sprintf’ output between 6 and 270 bytes into a destination of size 256 2026-02-13T03:53:15,165 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2026-02-13T03:53:15,165 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:16,080 command_dist.c: In function ‘mco_cbd_co_dist’: 2026-02-13T03:53:16,081 command_dist.c:596:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:16,081 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2026-02-13T03:53:16,081 | ^~ ~~~~~~~~~ 2026-02-13T03:53:16,081 command_dist.c:596:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2026-02-13T03:53:16,082 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2026-02-13T03:53:16,082 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:16,082 command_dist.c:625:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-02-13T03:53:16,083 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2026-02-13T03:53:16,083 | ^~~~~~~~~~~~~~~ 2026-02-13T03:53:16,083 command_dist.c:625:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2026-02-13T03:53:16,083 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2026-02-13T03:53:16,083 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:16,085 command_dist.c:681:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-02-13T03:53:16,086 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2026-02-13T03:53:16,086 | ^~~~~~~~~~~ 2026-02-13T03:53:16,086 command_dist.c:681:38: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:16,086 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2026-02-13T03:53:16,087 | ^~~~~~~~~~~~~~~~~ 2026-02-13T03:53:16,087 command_dist.c:681:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2026-02-13T03:53:16,087 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2026-02-13T03:53:16,087 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:16,088 command_dist.c:682:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-02-13T03:53:16,088 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2026-02-13T03:53:16,088 | ^~~~~ 2026-02-13T03:53:16,089 command_dist.c:682:32: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:16,089 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2026-02-13T03:53:16,089 | ^~~~~~~~~~~ 2026-02-13T03:53:16,090 command_dist.c:682:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2026-02-13T03:53:16,090 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2026-02-13T03:53:16,090 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:16,336 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2026-02-13T03:53:16,338 command_dist.c:763:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:16,338 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2026-02-13T03:53:16,338 | ^~ ~~~~~~~~~ 2026-02-13T03:53:16,339 command_dist.c:763:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2026-02-13T03:53:16,339 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2026-02-13T03:53:16,339 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:16,340 command_dist.c:790:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-02-13T03:53:16,340 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2026-02-13T03:53:16,340 | ^~~~~~~~~~~~~~~ 2026-02-13T03:53:16,341 command_dist.c:790:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2026-02-13T03:53:16,341 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2026-02-13T03:53:16,341 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:16,342 command_dist.c:823:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-02-13T03:53:16,342 823 | sprintf(distf, "%s/distance.out", distout_dir); 2026-02-13T03:53:16,342 | ^~~~~~~~~~~~~ 2026-02-13T03:53:16,343 command_dist.c:823:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2026-02-13T03:53:16,343 823 | sprintf(distf, "%s/distance.out", distout_dir); 2026-02-13T03:53:16,343 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:16,345 command_dist.c:849:39: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:16,345 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2026-02-13T03:53:16,345 | ^ 2026-02-13T03:53:16,346 command_dist.c:849:33: note: directive argument in the range [0, 536870912] 2026-02-13T03:53:16,346 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2026-02-13T03:53:16,346 | ^~~~~~~~~~ 2026-02-13T03:53:16,347 command_dist.c:849:8: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2026-02-13T03:53:16,347 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2026-02-13T03:53:16,347 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:16,348 command_dist.c:851:34: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:16,348 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2026-02-13T03:53:16,348 | ^ 2026-02-13T03:53:16,349 command_dist.c:851:28: note: directive argument in the range [0, 536870912] 2026-02-13T03:53:16,349 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2026-02-13T03:53:16,349 | ^~~~~~~~~~ 2026-02-13T03:53:16,350 command_dist.c:851:9: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2026-02-13T03:53:16,350 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2026-02-13T03:53:16,351 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:16,616 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2026-02-13T03:53:16,618 command_dist.c:927:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:16,618 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2026-02-13T03:53:16,618 | ^~ ~~~~~~~~~ 2026-02-13T03:53:16,619 command_dist.c:927:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2026-02-13T03:53:16,619 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2026-02-13T03:53:16,619 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:16,620 command_dist.c:956:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-02-13T03:53:16,620 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2026-02-13T03:53:16,621 | ^~~~~~~~~~~~~~~ 2026-02-13T03:53:16,622 command_dist.c:956:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2026-02-13T03:53:16,622 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2026-02-13T03:53:16,622 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:16,623 command_dist.c:990:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-02-13T03:53:16,623 990 | sprintf(distf, "%s/distance.out", distout_dir); 2026-02-13T03:53:16,623 | ^~~~~~~~~~~~~ 2026-02-13T03:53:16,624 command_dist.c:990:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2026-02-13T03:53:16,624 990 | sprintf(distf, "%s/distance.out", distout_dir); 2026-02-13T03:53:16,625 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:16,627 command_dist.c:1022:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-02-13T03:53:16,627 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2026-02-13T03:53:16,627 | ^~~~~~~~~~~ 2026-02-13T03:53:16,628 command_dist.c:1022:38: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:16,628 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2026-02-13T03:53:16,628 | ^~~~~~~~~~~~~~~~~ 2026-02-13T03:53:16,630 command_dist.c:1022:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2026-02-13T03:53:16,630 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2026-02-13T03:53:16,630 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:16,631 command_dist.c:1023:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-02-13T03:53:16,631 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2026-02-13T03:53:16,631 | ^~~~~ 2026-02-13T03:53:16,632 command_dist.c:1023:32: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:16,632 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2026-02-13T03:53:16,632 | ^~~~~~~~~~~ 2026-02-13T03:53:16,634 command_dist.c:1023:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2026-02-13T03:53:16,634 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2026-02-13T03:53:16,634 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:16,910 command_dist.c: In function ‘combine_queries’: 2026-02-13T03:53:16,911 command_dist.c:1492:41: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-02-13T03:53:16,912 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2026-02-13T03:53:16,912 | ^ 2026-02-13T03:53:16,913 command_dist.c:1492:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-02-13T03:53:16,914 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2026-02-13T03:53:16,914 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:16,915 command_dist.c:1499:40: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-02-13T03:53:16,915 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2026-02-13T03:53:16,916 | ^ 2026-02-13T03:53:16,917 command_dist.c:1499:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-02-13T03:53:16,917 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2026-02-13T03:53:16,918 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:16,921 command_dist.c:1603:32: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:16,921 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2026-02-13T03:53:16,921 | ^~ ~~~~~~~~ 2026-02-13T03:53:16,923 command_dist.c:1603:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2026-02-13T03:53:16,923 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2026-02-13T03:53:16,923 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:17,414 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_dist_wrapper.c -o build/temp.linux-armv7l-cpython-313/command_dist_wrapper.o -fopenmp 2026-02-13T03:53:17,588 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_set.c -o build/temp.linux-armv7l-cpython-313/command_set.o -fopenmp 2026-02-13T03:53:17,770 command_set.c: In function ‘sketch_operate’: 2026-02-13T03:53:17,770 command_set.c:178:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2026-02-13T03:53:17,770 178 | for(int n = 0; n < fco_pos[i+1] - fco_pos[i]; n++){ 2026-02-13T03:53:17,770 | ^ 2026-02-13T03:53:17,782 command_set.c: In function ‘combin_subset_pans’: 2026-02-13T03:53:17,782 command_set.c:457:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2026-02-13T03:53:17,782 457 | free(co_dstat_fpath); 2026-02-13T03:53:17,783 | ^~~~~~~~~~~~~~ 2026-02-13T03:53:17,783 In file included from kssdheaders/global_basic.h:159, 2026-02-13T03:53:17,783 from command_set.c:15: 2026-02-13T03:53:17,783 /usr/include/stdlib.h:687:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2026-02-13T03:53:17,784 687 | extern void free (void *__ptr) __THROW; 2026-02-13T03:53:17,784 | ~~~~~~^~~~~ 2026-02-13T03:53:17,790 command_set.c: In function ‘grouping_genomes’: 2026-02-13T03:53:17,790 command_set.c:562:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2026-02-13T03:53:17,790 562 | free(co_dstat_fpath); 2026-02-13T03:53:17,791 | ^~~~~~~~~~~~~~ 2026-02-13T03:53:17,791 /usr/include/stdlib.h:687:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2026-02-13T03:53:17,791 687 | extern void free (void *__ptr) __THROW; 2026-02-13T03:53:17,791 | ~~~~~~^~~~~ 2026-02-13T03:53:17,972 command_set.c: In function ‘sketch_union’: 2026-02-13T03:53:17,973 command_set.c:71:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-02-13T03:53:17,973 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2026-02-13T03:53:17,973 | ^ 2026-02-13T03:53:17,973 command_set.c:71:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-02-13T03:53:17,973 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2026-02-13T03:53:17,973 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:17,973 command_set.c:82:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:17,973 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2026-02-13T03:53:17,973 | ^~ ~~~~~~~~~~~ 2026-02-13T03:53:17,973 command_set.c:82:25: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:17,974 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2026-02-13T03:53:17,974 | ^~~~~~~~~~ 2026-02-13T03:53:17,974 command_set.c:82:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-02-13T03:53:17,974 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2026-02-13T03:53:17,974 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:17,974 command_set.c:92:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:17,974 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2026-02-13T03:53:17,974 | ^~ ~~~~~~~~~~ 2026-02-13T03:53:17,974 command_set.c:92:25: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:17,975 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2026-02-13T03:53:17,975 | ^~~~~~~~~~ 2026-02-13T03:53:17,975 command_set.c:92:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2026-02-13T03:53:17,975 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2026-02-13T03:53:17,975 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:18,104 command_set.c: In function ‘sketch_operate’: 2026-02-13T03:53:18,104 command_set.c:153:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:18,104 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2026-02-13T03:53:18,105 | ^~ ~~~~~~~~~~ 2026-02-13T03:53:18,105 command_set.c:153:25: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:18,105 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2026-02-13T03:53:18,105 | ^~~~~~~~~~ 2026-02-13T03:53:18,105 command_set.c:153:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2026-02-13T03:53:18,105 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2026-02-13T03:53:18,105 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:18,105 command_set.c:155:33: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:18,105 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2026-02-13T03:53:18,105 | ^~ ~~~~~~~~~~~~~~~ 2026-02-13T03:53:18,106 command_set.c:155:29: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:18,106 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2026-02-13T03:53:18,106 | ^~~~~~~~~~ 2026-02-13T03:53:18,106 command_set.c:155:13: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2026-02-13T03:53:18,106 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2026-02-13T03:53:18,106 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:18,106 command_set.c:165:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:18,106 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2026-02-13T03:53:18,106 | ^~ ~~~~~~~~~~~ 2026-02-13T03:53:18,106 command_set.c:165:25: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:18,106 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2026-02-13T03:53:18,107 | ^~~~~~~~~~~~~~~~ 2026-02-13T03:53:18,107 command_set.c:165:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2026-02-13T03:53:18,107 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2026-02-13T03:53:18,107 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:18,107 command_set.c:169:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:18,107 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2026-02-13T03:53:18,107 | ^~ ~~~~~~~~~~~ 2026-02-13T03:53:18,107 command_set.c:169:25: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:18,107 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2026-02-13T03:53:18,107 | ^~~~~~~~~~ 2026-02-13T03:53:18,107 command_set.c:169:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-02-13T03:53:18,108 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2026-02-13T03:53:18,108 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:18,108 command_set.c:174:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:18,108 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2026-02-13T03:53:18,108 | ^~ ~~~~~~~~~~~ 2026-02-13T03:53:18,108 command_set.c:174:25: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:18,108 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2026-02-13T03:53:18,108 | ^~~~~~~~~~ 2026-02-13T03:53:18,108 command_set.c:174:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-02-13T03:53:18,108 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2026-02-13T03:53:18,109 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:18,109 command_set.c:187:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:18,109 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2026-02-13T03:53:18,109 | ^~ ~~~~~~~~~~~ 2026-02-13T03:53:18,109 command_set.c:187:25: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:18,109 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2026-02-13T03:53:18,109 | ^~~~~~~~~~~~~~~~ 2026-02-13T03:53:18,109 command_set.c:187:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2026-02-13T03:53:18,109 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2026-02-13T03:53:18,109 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:18,109 command_set.c:192:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-02-13T03:53:18,110 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-02-13T03:53:18,110 | ^ 2026-02-13T03:53:18,110 command_set.c:192:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-02-13T03:53:18,110 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-02-13T03:53:18,110 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:18,276 command_set.c: In function ‘uniq_sketch_union’: 2026-02-13T03:53:18,277 command_set.c:219:39: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-02-13T03:53:18,277 219 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2026-02-13T03:53:18,277 | ^ 2026-02-13T03:53:18,277 command_set.c:219:17: note: ‘sprintf’ output between 11 and 21 bytes into a destination of size 20 2026-02-13T03:53:18,277 219 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2026-02-13T03:53:18,277 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:18,277 command_set.c:234:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-02-13T03:53:18,277 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2026-02-13T03:53:18,277 | ^ 2026-02-13T03:53:18,278 command_set.c:234:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-02-13T03:53:18,278 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2026-02-13T03:53:18,278 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:18,278 command_set.c:247:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:18,278 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2026-02-13T03:53:18,278 | ^~ ~~~~~~~~~~~ 2026-02-13T03:53:18,279 command_set.c:247:25: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:18,279 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2026-02-13T03:53:18,279 | ^~~~~~~~~~ 2026-02-13T03:53:18,279 command_set.c:247:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-02-13T03:53:18,279 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2026-02-13T03:53:18,279 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:18,279 command_set.c:259:29: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:18,280 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2026-02-13T03:53:18,280 | ^~ ~~~~~~~~~~~~~~~ 2026-02-13T03:53:18,280 command_set.c:259:25: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:18,280 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2026-02-13T03:53:18,280 | ^~~~~~~~~~ 2026-02-13T03:53:18,280 command_set.c:259:9: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2026-02-13T03:53:18,280 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2026-02-13T03:53:18,280 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:18,421 command_set.c: In function ‘combin_pans’: 2026-02-13T03:53:18,421 command_set.c:297:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:18,421 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-02-13T03:53:18,421 | ^~ ~~~~~~~~~~~ 2026-02-13T03:53:18,422 command_set.c:297:25: note: directive argument in the range [0, 1073741823] 2026-02-13T03:53:18,422 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-02-13T03:53:18,422 | ^~~~~~~~~~ 2026-02-13T03:53:18,422 command_set.c:297:9: note: ‘sprintf’ output between 10 and 274 bytes into a destination of size 256 2026-02-13T03:53:18,422 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-02-13T03:53:18,422 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:18,423 command_set.c:300:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:18,423 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-02-13T03:53:18,423 | ^~ ~~~~~~~~~~ 2026-02-13T03:53:18,423 command_set.c:300:25: note: directive argument in the range [0, 1073741823] 2026-02-13T03:53:18,423 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-02-13T03:53:18,423 | ^~~~~~~~~~ 2026-02-13T03:53:18,423 command_set.c:300:9: note: ‘sprintf’ output between 16 and 280 bytes into a destination of size 256 2026-02-13T03:53:18,423 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-02-13T03:53:18,424 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:18,424 command_set.c:342:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-02-13T03:53:18,424 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-02-13T03:53:18,424 | ^ 2026-02-13T03:53:18,425 command_set.c:342:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-02-13T03:53:18,425 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-02-13T03:53:18,425 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:18,642 command_set.c: In function ‘combin_subset_pans’: 2026-02-13T03:53:18,642 command_set.c:469:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:18,643 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2026-02-13T03:53:18,643 | ^~ ~~~~~~~~~~~ 2026-02-13T03:53:18,643 command_set.c:469:25: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:18,643 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2026-02-13T03:53:18,643 | ^~~~~~~~~~ 2026-02-13T03:53:18,644 command_set.c:469:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-02-13T03:53:18,644 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2026-02-13T03:53:18,644 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:18,645 command_set.c:475:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:18,645 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2026-02-13T03:53:18,645 | ^~ ~~~~~~~~~~ 2026-02-13T03:53:18,645 command_set.c:475:25: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:18,645 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2026-02-13T03:53:18,645 | ^~~~~~~~~~ 2026-02-13T03:53:18,646 command_set.c:475:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2026-02-13T03:53:18,646 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2026-02-13T03:53:18,646 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:18,647 command_set.c:481:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:18,647 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-02-13T03:53:18,647 | ^~ ~~~~~~~~~~~ 2026-02-13T03:53:18,647 command_set.c:481:25: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:18,647 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-02-13T03:53:18,648 | ^~~~~~~~~~ 2026-02-13T03:53:18,648 command_set.c:481:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-02-13T03:53:18,648 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-02-13T03:53:18,648 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:18,649 command_set.c:512:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:18,649 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-02-13T03:53:18,649 | ^~ ~~~~~~~~~~ 2026-02-13T03:53:18,650 command_set.c:512:25: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:18,650 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-02-13T03:53:18,650 | ^~~~~~~~~~ 2026-02-13T03:53:18,650 command_set.c:512:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2026-02-13T03:53:18,651 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-02-13T03:53:18,651 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:18,651 command_set.c:523:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-02-13T03:53:18,651 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-02-13T03:53:18,651 | ^ 2026-02-13T03:53:18,652 command_set.c:523:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-02-13T03:53:18,652 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-02-13T03:53:18,652 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:18,887 command_set.c: In function ‘grouping_genomes’: 2026-02-13T03:53:18,888 command_set.c:574:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:18,888 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2026-02-13T03:53:18,888 | ^~ ~~~~~~~~~~~ 2026-02-13T03:53:18,889 command_set.c:574:25: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:18,889 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2026-02-13T03:53:18,889 | ^~~~~~~~~~ 2026-02-13T03:53:18,890 command_set.c:574:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-02-13T03:53:18,890 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2026-02-13T03:53:18,890 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:18,891 command_set.c:580:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:18,891 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2026-02-13T03:53:18,891 | ^~ ~~~~~~~~~~ 2026-02-13T03:53:18,891 command_set.c:580:25: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:18,892 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2026-02-13T03:53:18,892 | ^~~~~~~~~~ 2026-02-13T03:53:18,892 command_set.c:580:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2026-02-13T03:53:18,892 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2026-02-13T03:53:18,892 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:18,894 command_set.c:612:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:18,894 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-02-13T03:53:18,894 | ^~ ~~~~~~~~~~~ 2026-02-13T03:53:18,894 command_set.c:612:25: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:18,894 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-02-13T03:53:18,895 | ^~~~~~~~~~ 2026-02-13T03:53:18,895 command_set.c:612:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-02-13T03:53:18,895 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-02-13T03:53:18,895 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:18,897 command_set.c:634:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:18,897 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-02-13T03:53:18,897 | ^~ ~~~~~~~~~~ 2026-02-13T03:53:18,897 command_set.c:634:25: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:18,897 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-02-13T03:53:18,897 | ^~~~~~~~~~ 2026-02-13T03:53:18,898 command_set.c:634:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2026-02-13T03:53:18,898 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-02-13T03:53:18,898 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:18,899 command_set.c:645:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-02-13T03:53:18,899 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-02-13T03:53:18,899 | ^ 2026-02-13T03:53:18,900 command_set.c:645:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-02-13T03:53:18,900 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-02-13T03:53:18,900 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:19,190 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_shuffle.c -o build/temp.linux-armv7l-cpython-313/command_shuffle.o -fopenmp 2026-02-13T03:53:19,502 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c global_basic.c -o build/temp.linux-armv7l-cpython-313/global_basic.o -fopenmp 2026-02-13T03:53:19,681 global_basic.c: In function ‘organize_infile_list’: 2026-02-13T03:53:19,682 global_basic.c:195:20: error: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 2026-02-13T03:53:19,682 195 | while (isspace(*buf)) buf++; 2026-02-13T03:53:19,682 | ^~~~~~~ 2026-02-13T03:53:19,682 global_basic.c:35:1: note: include ‘’ or provide a declaration of ‘isspace’ 2026-02-13T03:53:19,682 34 | #include 2026-02-13T03:53:19,682 +++ |+#include 2026-02-13T03:53:19,682 35 | 2026-02-13T03:53:19,682 global_basic.c:201:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-02-13T03:53:19,683 201 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2026-02-13T03:53:19,683 | ~~^ 2026-02-13T03:53:19,683 | | 2026-02-13T03:53:19,683 | long unsigned int 2026-02-13T03:53:19,683 | %u 2026-02-13T03:53:19,683 202 | list_path, file_num, buf, strlen(buf), PATHLEN); 2026-02-13T03:53:19,683 | ~~~~~~~~~~~ 2026-02-13T03:53:19,683 | | 2026-02-13T03:53:19,683 | size_t {aka unsigned int} 2026-02-13T03:53:19,684 global_basic.c:233:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-02-13T03:53:19,684 233 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2026-02-13T03:53:19,684 | ~~^ 2026-02-13T03:53:19,684 | | 2026-02-13T03:53:19,684 | long unsigned int 2026-02-13T03:53:19,685 | %u 2026-02-13T03:53:19,685 234 | list_path, file_num, buf, strlen(buf), PATHLEN); 2026-02-13T03:53:19,685 | ~~~~~~~~~~~ 2026-02-13T03:53:19,685 | | 2026-02-13T03:53:19,685 | size_t {aka unsigned int} 2026-02-13T03:53:19,703 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2026-02-13T03:53:19,866 ERROR: python setup.py bdist_wheel exited with 1 2026-02-13T03:53:19,879 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2026-02-13T03:53:19,879 exec(compile('"'"''"'"''"'"' 2026-02-13T03:53:19,879 # This is -- a caller that pip uses to run setup.py 2026-02-13T03:53:19,879 # 2026-02-13T03:53:19,879 # - It imports setuptools before invoking setup.py, to enable projects that directly 2026-02-13T03:53:19,879 # import from `distutils.core` to work with newer packaging standards. 2026-02-13T03:53:19,879 # - It provides a clear error message when setuptools is not installed. 2026-02-13T03:53:19,879 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2026-02-13T03:53:19,879 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2026-02-13T03:53:19,879 # manifest_maker: standard file '"'"'-c'"'"' not found". 2026-02-13T03:53:19,879 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2026-02-13T03:53:19,879 import os, sys, tokenize, traceback 2026-02-13T03:53:19,879 2026-02-13T03:53:19,879 try: 2026-02-13T03:53:19,879 import setuptools 2026-02-13T03:53:19,879 except ImportError: 2026-02-13T03:53:19,879 print( 2026-02-13T03:53:19,879 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2026-02-13T03:53:19,879 "the build environment with exception:", 2026-02-13T03:53:19,879 file=sys.stderr, 2026-02-13T03:53:19,879 ) 2026-02-13T03:53:19,879 traceback.print_exc() 2026-02-13T03:53:19,879 sys.exit(1) 2026-02-13T03:53:19,879 2026-02-13T03:53:19,879 __file__ = %r 2026-02-13T03:53:19,879 sys.argv[0] = __file__ 2026-02-13T03:53:19,879 2026-02-13T03:53:19,879 if os.path.exists(__file__): 2026-02-13T03:53:19,879 filename = __file__ 2026-02-13T03:53:19,879 with tokenize.open(__file__) as f: 2026-02-13T03:53:19,879 setup_py_code = f.read() 2026-02-13T03:53:19,879 else: 2026-02-13T03:53:19,879 filename = "" 2026-02-13T03:53:19,879 setup_py_code = "from setuptools import setup; setup()" 2026-02-13T03:53:19,879 2026-02-13T03:53:19,879 exec(compile(setup_py_code, filename, "exec")) 2026-02-13T03:53:19,879 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-lj6ejhtk/kssdtree_9b301641b1cf4fbbb8732e27cdddd503/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-obse4v9_[/] 2026-02-13T03:53:19,879 [bold magenta]cwd[/]: /tmp/pip-wheel-lj6ejhtk/kssdtree_9b301641b1cf4fbbb8732e27cdddd503/ 2026-02-13T03:53:19,879 Building wheel for kssdtree (setup.py): finished with status 'error' 2026-02-13T03:53:19,880 ERROR: Failed building wheel for kssdtree 2026-02-13T03:53:19,881 Running setup.py clean for kssdtree 2026-02-13T03:53:19,882 Running command python setup.py clean 2026-02-13T03:53:21,116 running clean 2026-02-13T03:53:21,266 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2026-02-13T03:53:21,267 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2026-02-13T03:53:21,267 'build/bdist.linux-armv7l' does not exist -- can't clean it 2026-02-13T03:53:21,267 'build/scripts-3.13' does not exist -- can't clean it 2026-02-13T03:53:21,267 removing 'build' 2026-02-13T03:53:21,381 Failed to build kssdtree 2026-02-13T03:53:21,382 ERROR: Failed to build one or more wheels 2026-02-13T03:53:21,383 Exception information: 2026-02-13T03:53:21,383 Traceback (most recent call last): 2026-02-13T03:53:21,383 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2026-02-13T03:53:21,383 status = _inner_run() 2026-02-13T03:53:21,383 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2026-02-13T03:53:21,383 return self.run(options, args) 2026-02-13T03:53:21,383 ~~~~~~~~^^^^^^^^^^^^^^^ 2026-02-13T03:53:21,383 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2026-02-13T03:53:21,383 return func(self, options, args) 2026-02-13T03:53:21,383 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2026-02-13T03:53:21,383 raise CommandError("Failed to build one or more wheels") 2026-02-13T03:53:21,383 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2026-02-13T03:53:21,387 Removed build tracker: '/tmp/pip-build-tracker-v4l3c2_f'