2026-02-13T03:53:23,296 Created temporary directory: /tmp/pip-build-tracker-evlx1blm 2026-02-13T03:53:23,296 Initialized build tracking at /tmp/pip-build-tracker-evlx1blm 2026-02-13T03:53:23,297 Created build tracker: /tmp/pip-build-tracker-evlx1blm 2026-02-13T03:53:23,297 Entered build tracker: /tmp/pip-build-tracker-evlx1blm 2026-02-13T03:53:23,297 Created temporary directory: /tmp/pip-wheel-gfzqmomz 2026-02-13T03:53:23,300 Created temporary directory: /tmp/pip-ephem-wheel-cache-m1mi64oc 2026-02-13T03:53:23,358 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-02-13T03:53:23,360 2 location(s) to search for versions of kssdtree: 2026-02-13T03:53:23,360 * https://pypi.org/simple/kssdtree/ 2026-02-13T03:53:23,360 * https://www.piwheels.org/simple/kssdtree/ 2026-02-13T03:53:23,361 Fetching project page and analyzing links: https://pypi.org/simple/kssdtree/ 2026-02-13T03:53:23,361 Getting page https://pypi.org/simple/kssdtree/ 2026-02-13T03:53:23,362 Found index url https://pypi.org/simple/ 2026-02-13T03:53:23,509 Fetched page https://pypi.org/simple/kssdtree/ as application/vnd.pypi.simple.v1+json 2026-02-13T03:53:23,515 Found link https://files.pythonhosted.org/packages/d5/1e/9e5c5945a44bb40002d1c259f734a531999fa6e87db89fe7c7ddcfc583cc/kssdtree-1.1.1.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.1 2026-02-13T03:53:23,516 Found link https://files.pythonhosted.org/packages/9a/4c/6516f734f5860e4b30f9091aaac5811663bfae72c4de4ae6566c89192767/kssdtree-1.1.2.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.2 2026-02-13T03:53:23,516 Found link https://files.pythonhosted.org/packages/a4/cd/f2954686c636e853cc3fda197c459195377b78288874cf7d68218a8bdbf4/kssdtree-1.1.3.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.3 2026-02-13T03:53:23,517 Found link https://files.pythonhosted.org/packages/20/ea/b0301924e3f7d367cbb7b8da66837dba9af2a332bf56ed35e03a33faee76/kssdtree-1.1.4.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.4 2026-02-13T03:53:23,517 Found link https://files.pythonhosted.org/packages/41/65/ed35110b84bc0dd02b9add0104f10160754d2ea0882191767d512146a884/kssdtree-1.1.6.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.6 2026-02-13T03:53:23,518 Found link https://files.pythonhosted.org/packages/cd/4b/d886cbcc573ff0969da7d9c756049925b86141e60ee6708dfbbe0644d008/kssdtree-1.1.7.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.7 2026-02-13T03:53:23,518 Found link https://files.pythonhosted.org/packages/7e/8a/a62c8adc92df69ab8cb242827ee64a3e2b6d5c89b83425785dd00605af17/kssdtree-1.1.8.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.8 2026-02-13T03:53:23,519 Found link https://files.pythonhosted.org/packages/da/db/e458cca6427752c05428d2378ccdee631d32f760174fdaba65f73125e71b/kssdtree-1.1.9.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.9 2026-02-13T03:53:23,519 Found link https://files.pythonhosted.org/packages/9d/47/017180a30e73e421372377cbe6d01c5e51a5108ea2177f20ccd7d283f8d1/kssdtree-2.0.0.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.0 2026-02-13T03:53:23,520 Found link https://files.pythonhosted.org/packages/ba/39/d443cac955912a0371c93b797311cb9ec3a8d6ee0a5d7673376d826aa6b2/kssdtree-2.0.1.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.1 2026-02-13T03:53:23,520 Found link https://files.pythonhosted.org/packages/2e/32/e53c0e3735cbc913b2c96b4e0e1c1005fe816a4d71b38b80cdcfb5c67fa8/kssdtree-2.0.2.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.2 2026-02-13T03:53:23,520 Found link https://files.pythonhosted.org/packages/c0/0f/effc10c8e76dbe3b9a35a4b4d9e65a0a889ee805e10334541c3ca7ae3b94/kssdtree-2.0.3.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.3 2026-02-13T03:53:23,521 Found link https://files.pythonhosted.org/packages/fc/8d/d3790baa2f2f0a01c913005b94a82dc13ef601e7015e662ccff94bb1b458/kssdtree-2.0.4.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.4 2026-02-13T03:53:23,521 Found link https://files.pythonhosted.org/packages/b5/f8/19480a4c57704944f973ebf534f9582054949cca20170a33c6f874974440/kssdtree-2.0.5.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.5 2026-02-13T03:53:23,522 Found link https://files.pythonhosted.org/packages/46/ef/2d920d5d2fceded48c7add363e04f49ae85414bcd4360e1295d6fddc4a24/kssdtree-2.0.6.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.6 2026-02-13T03:53:23,522 Found link https://files.pythonhosted.org/packages/9c/1c/c6b3f05465d145856ac992328bd59e776286a59b120254620c1dbffcf67f/kssdtree-2.0.7.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.7 2026-02-13T03:53:23,523 Found link https://files.pythonhosted.org/packages/82/9b/dac2af6572f0c4421e5ba8341dcfddac466de30c62acfa019d9ef70b2670/kssdtree-2.0.8.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.8 2026-02-13T03:53:23,523 Found link https://files.pythonhosted.org/packages/41/14/6350a913694cb9af7e5d542e566286c28d7a96c0b257bf7e19e8cc0400d0/kssdtree-2.0.9.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.9 2026-02-13T03:53:23,524 Found link https://files.pythonhosted.org/packages/2d/27/624f3bdd2bb038c3095130be4908ff39cae2e05bdb693b709b1c87a463ec/kssdtree-2.1.0.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.1.0 2026-02-13T03:53:23,524 Fetching project page and analyzing links: https://www.piwheels.org/simple/kssdtree/ 2026-02-13T03:53:23,525 Getting page https://www.piwheels.org/simple/kssdtree/ 2026-02-13T03:53:23,527 Found index url https://www.piwheels.org/simple/ 2026-02-13T03:53:23,644 Fetched page https://www.piwheels.org/simple/kssdtree/ as text/html 2026-02-13T03:53:23,658 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-2.1.0-cp311-cp311-linux_armv6l.whl#sha256=169d23da665645c804665ee8db85ae8198a3f174255c0726286c29a0f454e68e (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,658 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-2.1.0-cp311-cp311-linux_armv7l.whl#sha256=169d23da665645c804665ee8db85ae8198a3f174255c0726286c29a0f454e68e (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,659 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.8-cp311-cp311-linux_armv6l.whl#sha256=af8a0b06198bfd1ce24b078cdad070d5c587b126973ade98efa6ab13b9c2fc32 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,659 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.8-cp311-cp311-linux_armv7l.whl#sha256=af8a0b06198bfd1ce24b078cdad070d5c587b126973ade98efa6ab13b9c2fc32 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,659 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.8-cp39-cp39-linux_armv6l.whl#sha256=fb6f717dcadeee1974e114645ccfca55bc46eb4f46872cea71acc544102be042 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,659 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.8-cp39-cp39-linux_armv7l.whl#sha256=fb6f717dcadeee1974e114645ccfca55bc46eb4f46872cea71acc544102be042 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,659 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.7-cp311-cp311-linux_armv6l.whl#sha256=f267901a8f679be9a77fc090fb1c15f5144a295e5158a4ff2e62e2ba29fec967 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,659 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.7-cp311-cp311-linux_armv7l.whl#sha256=f267901a8f679be9a77fc090fb1c15f5144a295e5158a4ff2e62e2ba29fec967 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,659 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.7-cp39-cp39-linux_armv6l.whl#sha256=27677e716e6d66163d5aa6b6f09a6aaae97d4a8cf4882e9eab54b93800cc3ea8 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,660 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.7-cp39-cp39-linux_armv7l.whl#sha256=27677e716e6d66163d5aa6b6f09a6aaae97d4a8cf4882e9eab54b93800cc3ea8 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,660 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.6-cp311-cp311-linux_armv6l.whl#sha256=e1e02281e0fc8ed3b80b596a811ca2a9b50cb7affb3649479228d59c074c1f94 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,660 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.6-cp311-cp311-linux_armv7l.whl#sha256=e1e02281e0fc8ed3b80b596a811ca2a9b50cb7affb3649479228d59c074c1f94 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,660 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.6-cp39-cp39-linux_armv6l.whl#sha256=6cc8e863f6316aa656790c5fc8a7bb42bbb33d4db4a6256f3e30131b023d5e41 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,660 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.6-cp39-cp39-linux_armv7l.whl#sha256=6cc8e863f6316aa656790c5fc8a7bb42bbb33d4db4a6256f3e30131b023d5e41 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,660 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.5-cp311-cp311-linux_armv6l.whl#sha256=cecf3000ed0ffcd720412023d8de2f213356363c01aa3193441c040ed34353d3 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,660 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.5-cp311-cp311-linux_armv7l.whl#sha256=cecf3000ed0ffcd720412023d8de2f213356363c01aa3193441c040ed34353d3 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,661 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.5-cp39-cp39-linux_armv6l.whl#sha256=db08595adc89347b61965ba36e918055e8a0dc5f6a2b0bdfe16133eb363412d3 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,661 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.5-cp39-cp39-linux_armv7l.whl#sha256=db08595adc89347b61965ba36e918055e8a0dc5f6a2b0bdfe16133eb363412d3 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,661 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.4-cp311-cp311-linux_armv6l.whl#sha256=97a69f799c2d1b7024a9033b8a1e3fc17af4748a1ed726f52397d884303eb870 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,661 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.4-cp311-cp311-linux_armv7l.whl#sha256=97a69f799c2d1b7024a9033b8a1e3fc17af4748a1ed726f52397d884303eb870 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,661 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.4-cp39-cp39-linux_armv6l.whl#sha256=00938a03bead64e58bc1928832b7952b04d844e79b41da12160490c7edbb9e9f (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,661 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.4-cp39-cp39-linux_armv7l.whl#sha256=00938a03bead64e58bc1928832b7952b04d844e79b41da12160490c7edbb9e9f (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,661 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.3-cp311-cp311-linux_armv6l.whl#sha256=d70b4b00c6bf4ff5b294b9ad2594aa1e32981df4b9869be9d13aafa0ff614bc3 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,662 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.3-cp311-cp311-linux_armv7l.whl#sha256=d70b4b00c6bf4ff5b294b9ad2594aa1e32981df4b9869be9d13aafa0ff614bc3 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,662 Skipping link: No binaries permitted for kssdtree: 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https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.0-cp311-cp311-linux_armv7l.whl#sha256=16a2e46376ed2874435371fd57a97405d4b631b35c014b9e395a4528a1e655b8 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,663 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.0-cp39-cp39-linux_armv6l.whl#sha256=131de046d905a575216e4344f66d988df06c39a828f970e791ab2dd8ce7c204c (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,663 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.0-cp39-cp39-linux_armv7l.whl#sha256=131de046d905a575216e4344f66d988df06c39a828f970e791ab2dd8ce7c204c (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,663 Skipping link: No binaries permitted for kssdtree: 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https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp311-cp311-linux_armv6l.whl#sha256=0901b6cf3efb240d5d32b1e88a8863f28e2986a2c0749886421c643b98a4aec2 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,665 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp311-cp311-linux_armv7l.whl#sha256=0901b6cf3efb240d5d32b1e88a8863f28e2986a2c0749886421c643b98a4aec2 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,665 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp39-cp39-linux_armv6l.whl#sha256=9defb70b5162efc2c0eb6e415a7e37c604aa9b248a006af86af8f59a3bce5d2b (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,665 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp39-cp39-linux_armv7l.whl#sha256=9defb70b5162efc2c0eb6e415a7e37c604aa9b248a006af86af8f59a3bce5d2b (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,665 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp37-cp37m-linux_armv6l.whl#sha256=ffef4ae0f634dd977cc2ec6798b9f36f73d788aca27bb7199f552d5513c34413 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,666 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp37-cp37m-linux_armv7l.whl#sha256=ffef4ae0f634dd977cc2ec6798b9f36f73d788aca27bb7199f552d5513c34413 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,666 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp311-cp311-linux_armv6l.whl#sha256=64b685362c3f9027bfeafdffb6a5d58c349a76fd551eeb7b98de146827463e75 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,666 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp311-cp311-linux_armv7l.whl#sha256=64b685362c3f9027bfeafdffb6a5d58c349a76fd551eeb7b98de146827463e75 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,666 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp39-cp39-linux_armv6l.whl#sha256=34527068d84569095aefee41a353c5dfc0dfa55b68097890da9a1eca2ee9b726 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,666 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp39-cp39-linux_armv7l.whl#sha256=34527068d84569095aefee41a353c5dfc0dfa55b68097890da9a1eca2ee9b726 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,666 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp311-cp311-linux_armv6l.whl#sha256=6b76f3b3f532934ad49a829e7bf8176af580f4687f1491c49c3f571bf081f961 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,666 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp311-cp311-linux_armv7l.whl#sha256=6b76f3b3f532934ad49a829e7bf8176af580f4687f1491c49c3f571bf081f961 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,667 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp37-cp37m-linux_armv6l.whl#sha256=d179f6c6c0ad4e0f06950e1609118b065b3476c47446325f6614bdbef5ede0d0 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,667 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp37-cp37m-linux_armv7l.whl#sha256=d179f6c6c0ad4e0f06950e1609118b065b3476c47446325f6614bdbef5ede0d0 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,667 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp39-cp39-linux_armv6l.whl#sha256=6df2298fa80eefa823153fa0b9db67e35da72da7f88c5949f4f637872ff22c3b (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,667 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp39-cp39-linux_armv7l.whl#sha256=6df2298fa80eefa823153fa0b9db67e35da72da7f88c5949f4f637872ff22c3b (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,667 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp311-cp311-linux_armv6l.whl#sha256=146b572fde14b0d0770e1c1cd90870ad6db4af293ade814fed7a49e3857f1444 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,667 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp311-cp311-linux_armv7l.whl#sha256=146b572fde14b0d0770e1c1cd90870ad6db4af293ade814fed7a49e3857f1444 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,667 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp37-cp37m-linux_armv6l.whl#sha256=8c0cc1974033765d6eeefdb635a506385b5f38e00361bd6de47ff1a83b07e12a (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,667 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp37-cp37m-linux_armv7l.whl#sha256=8c0cc1974033765d6eeefdb635a506385b5f38e00361bd6de47ff1a83b07e12a (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,668 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp39-cp39-linux_armv6l.whl#sha256=9f3fe3d3b4b4bde8b34a8f964ebde72f1efcc7833b9a0b34f6b9c8ff3ed595db (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,668 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp39-cp39-linux_armv7l.whl#sha256=9f3fe3d3b4b4bde8b34a8f964ebde72f1efcc7833b9a0b34f6b9c8ff3ed595db (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,668 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp311-cp311-linux_armv6l.whl#sha256=29b8e7f4a3e60084db855e6d587231253771ad57184a3265922d659512e136fb (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,668 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp311-cp311-linux_armv7l.whl#sha256=29b8e7f4a3e60084db855e6d587231253771ad57184a3265922d659512e136fb (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,668 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp37-cp37m-linux_armv6l.whl#sha256=34b00b40f17a95b2cc5cbabd880acc2c56996457b0acd265cace6966c10b9575 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,668 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp37-cp37m-linux_armv7l.whl#sha256=34b00b40f17a95b2cc5cbabd880acc2c56996457b0acd265cace6966c10b9575 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,668 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp39-cp39-linux_armv6l.whl#sha256=04471408d60c00f568404b1ab01ca89567b36a1aa50ef6041aceef07ed1e45f4 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,669 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp39-cp39-linux_armv7l.whl#sha256=04471408d60c00f568404b1ab01ca89567b36a1aa50ef6041aceef07ed1e45f4 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T03:53:23,669 Skipping link: not a file: https://www.piwheels.org/simple/kssdtree/ 2026-02-13T03:53:23,669 Skipping link: not a file: https://pypi.org/simple/kssdtree/ 2026-02-13T03:53:23,695 Given no hashes to check 1 links for project 'kssdtree': discarding no candidates 2026-02-13T03:53:23,696 Collecting kssdtree==2.1.0 2026-02-13T03:53:23,698 Created temporary directory: /tmp/pip-unpack-wd0xeela 2026-02-13T03:53:23,840 Downloading kssdtree-2.1.0.tar.gz (114 kB) 2026-02-13T03:53:23,935 Added kssdtree==2.1.0 from https://files.pythonhosted.org/packages/2d/27/624f3bdd2bb038c3095130be4908ff39cae2e05bdb693b709b1c87a463ec/kssdtree-2.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-evlx1blm' 2026-02-13T03:53:23,936 Running setup.py (path:/tmp/pip-wheel-gfzqmomz/kssdtree_138c271435174020a019dcd9db697832/setup.py) egg_info for package kssdtree 2026-02-13T03:53:23,937 Created temporary directory: /tmp/pip-pip-egg-info-23ev80h1 2026-02-13T03:53:23,937 Preparing metadata (setup.py): started 2026-02-13T03:53:23,938 Running command python setup.py egg_info 2026-02-13T03:53:25,110 running egg_info 2026-02-13T03:53:25,188 creating /tmp/pip-pip-egg-info-23ev80h1/kssdtree.egg-info 2026-02-13T03:53:25,188 writing /tmp/pip-pip-egg-info-23ev80h1/kssdtree.egg-info/PKG-INFO 2026-02-13T03:53:25,189 writing dependency_links to /tmp/pip-pip-egg-info-23ev80h1/kssdtree.egg-info/dependency_links.txt 2026-02-13T03:53:25,190 writing requirements to /tmp/pip-pip-egg-info-23ev80h1/kssdtree.egg-info/requires.txt 2026-02-13T03:53:25,190 writing top-level names to /tmp/pip-pip-egg-info-23ev80h1/kssdtree.egg-info/top_level.txt 2026-02-13T03:53:25,190 writing manifest file '/tmp/pip-pip-egg-info-23ev80h1/kssdtree.egg-info/SOURCES.txt' 2026-02-13T03:53:25,420 reading manifest file '/tmp/pip-pip-egg-info-23ev80h1/kssdtree.egg-info/SOURCES.txt' 2026-02-13T03:53:25,421 reading manifest template 'MANIFEST.in' 2026-02-13T03:53:25,427 writing manifest file '/tmp/pip-pip-egg-info-23ev80h1/kssdtree.egg-info/SOURCES.txt' 2026-02-13T03:53:25,542 Preparing metadata (setup.py): finished with status 'done' 2026-02-13T03:53:25,546 Source in /tmp/pip-wheel-gfzqmomz/kssdtree_138c271435174020a019dcd9db697832 has version 2.1.0, which satisfies requirement kssdtree==2.1.0 from https://files.pythonhosted.org/packages/2d/27/624f3bdd2bb038c3095130be4908ff39cae2e05bdb693b709b1c87a463ec/kssdtree-2.1.0.tar.gz 2026-02-13T03:53:25,547 Removed kssdtree==2.1.0 from https://files.pythonhosted.org/packages/2d/27/624f3bdd2bb038c3095130be4908ff39cae2e05bdb693b709b1c87a463ec/kssdtree-2.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-evlx1blm' 2026-02-13T03:53:25,550 Created temporary directory: /tmp/pip-unpack-rpgpxakc 2026-02-13T03:53:25,550 Created temporary directory: /tmp/pip-unpack-63pt8_rw 2026-02-13T03:53:25,551 Building wheels for collected packages: kssdtree 2026-02-13T03:53:25,552 Created temporary directory: /tmp/pip-wheel-hs6v7f8f 2026-02-13T03:53:25,552 DEPRECATION: Building 'kssdtree' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'kssdtree'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2026-02-13T03:53:25,553 Building wheel for kssdtree (setup.py): started 2026-02-13T03:53:25,554 Destination directory: /tmp/pip-wheel-hs6v7f8f 2026-02-13T03:53:25,554 Running command python setup.py bdist_wheel 2026-02-13T03:53:26,647 running bdist_wheel 2026-02-13T03:53:26,941 running build 2026-02-13T03:53:26,941 running build_py 2026-02-13T03:53:27,019 creating build/lib.linux-armv7l-cpython-313 2026-02-13T03:53:27,019 copying kssdtree.py -> build/lib.linux-armv7l-cpython-313 2026-02-13T03:53:27,020 copying toolutils.py -> build/lib.linux-armv7l-cpython-313 2026-02-13T03:53:27,021 running egg_info 2026-02-13T03:53:27,093 writing kssdtree.egg-info/PKG-INFO 2026-02-13T03:53:27,094 writing dependency_links to kssdtree.egg-info/dependency_links.txt 2026-02-13T03:53:27,095 writing requirements to kssdtree.egg-info/requires.txt 2026-02-13T03:53:27,095 writing top-level names to kssdtree.egg-info/top_level.txt 2026-02-13T03:53:27,170 reading manifest file 'kssdtree.egg-info/SOURCES.txt' 2026-02-13T03:53:27,175 reading manifest template 'MANIFEST.in' 2026-02-13T03:53:27,182 writing manifest file 'kssdtree.egg-info/SOURCES.txt' 2026-02-13T03:53:27,183 running build_ext 2026-02-13T03:53:27,565 building 'kssd' extension 2026-02-13T03:53:27,567 creating build/temp.linux-armv7l-cpython-313 2026-02-13T03:53:27,569 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c co2mco.c -o build/temp.linux-armv7l-cpython-313/co2mco.o -fopenmp 2026-02-13T03:53:27,736 co2mco.c: In function ‘cdb_kmerf2kmerdb’: 2026-02-13T03:53:27,736 co2mco.c:109:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2026-02-13T03:53:27,736 109 | for (unsigned int i = 0; i < comp_num; i++) { 2026-02-13T03:53:27,736 | ^ 2026-02-13T03:53:27,739 co2mco.c: In function ‘co2unitllmco’: 2026-02-13T03:53:27,739 co2mco.c:191:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2026-02-13T03:53:27,739 191 | for (unsigned int i = 0; i < bin_sz; i++) { 2026-02-13T03:53:27,740 | ^ 2026-02-13T03:53:28,419 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_composite.c -o build/temp.linux-armv7l-cpython-313/command_composite.o -fopenmp 2026-02-13T03:53:28,806 command_composite.c: In function ‘get_species_abundance’: 2026-02-13T03:53:28,806 command_composite.c:32:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2026-02-13T03:53:28,806 32 | if (ref_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, ref_dstat_fpath); 2026-02-13T03:53:28,806 | ^~ 2026-02-13T03:53:28,806 command_composite.c:34:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2026-02-13T03:53:28,807 34 | if (qry_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, qry_dstat_fpath); 2026-02-13T03:53:28,807 | ^~ 2026-02-13T03:53:28,807 command_composite.c:64:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:28,807 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2026-02-13T03:53:28,807 | ^ 2026-02-13T03:53:28,808 command_composite.c:64:31: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:28,808 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2026-02-13T03:53:28,808 | ^~~~~~~~~~ 2026-02-13T03:53:28,808 command_composite.c:64:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2026-02-13T03:53:28,808 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2026-02-13T03:53:28,808 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:28,809 command_composite.c:70:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:28,809 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2026-02-13T03:53:28,809 | ^ 2026-02-13T03:53:28,809 command_composite.c:70:31: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:28,809 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2026-02-13T03:53:28,810 | ^~~~~~~~~~ 2026-02-13T03:53:28,810 command_composite.c:70:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2026-02-13T03:53:28,810 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2026-02-13T03:53:28,810 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:28,810 command_composite.c:76:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:28,810 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2026-02-13T03:53:28,810 | ^ 2026-02-13T03:53:28,811 command_composite.c:76:31: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:28,811 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2026-02-13T03:53:28,811 | ^~~~~~~~~~ 2026-02-13T03:53:28,811 command_composite.c:76:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2026-02-13T03:53:28,811 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2026-02-13T03:53:28,811 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:28,812 command_composite.c:82:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:28,812 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2026-02-13T03:53:28,812 | ^ 2026-02-13T03:53:28,812 command_composite.c:82:31: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:28,812 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2026-02-13T03:53:28,812 | ^~~~~~~~~~ 2026-02-13T03:53:28,813 command_composite.c:82:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2026-02-13T03:53:28,813 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2026-02-13T03:53:28,813 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:28,813 command_composite.c:88:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:28,813 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2026-02-13T03:53:28,813 | ^ 2026-02-13T03:53:28,814 command_composite.c:88:31: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:28,814 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2026-02-13T03:53:28,814 | ^~~~~~~~~~~~ 2026-02-13T03:53:28,814 command_composite.c:88:13: note: ‘sprintf’ output 6 or more bytes (assuming 271) into a destination of size 256 2026-02-13T03:53:28,814 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2026-02-13T03:53:28,814 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:29,062 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_dist.c -o build/temp.linux-armv7l-cpython-313/command_dist.o -fopenmp 2026-02-13T03:53:29,289 command_dist.c: In function ‘mco_cbd_co_dist’: 2026-02-13T03:53:29,291 command_dist.c:677:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-02-13T03:53:29,291 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2026-02-13T03:53:29,291 | ~~^ 2026-02-13T03:53:29,291 | | 2026-02-13T03:53:29,292 | long unsigned int 2026-02-13T03:53:29,292 | %u 2026-02-13T03:53:29,292 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2026-02-13T03:53:29,292 | ~~~~~~~ 2026-02-13T03:53:29,292 | | 2026-02-13T03:53:29,292 | size_t {aka unsigned int} 2026-02-13T03:53:29,294 command_dist.c:677:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-02-13T03:53:29,294 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2026-02-13T03:53:29,294 | ~~^ 2026-02-13T03:53:29,294 | | 2026-02-13T03:53:29,294 | long unsigned int 2026-02-13T03:53:29,295 | %u 2026-02-13T03:53:29,295 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2026-02-13T03:53:29,295 679 | maplength, (size_t) b * unitsz_distf_mapped); 2026-02-13T03:53:29,295 | ~~~~~~~~~ 2026-02-13T03:53:29,295 | | 2026-02-13T03:53:29,295 | size_t {aka unsigned int} 2026-02-13T03:53:29,297 command_dist.c:677:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2026-02-13T03:53:29,297 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2026-02-13T03:53:29,297 | ~~^ 2026-02-13T03:53:29,297 | | 2026-02-13T03:53:29,297 | long unsigned int 2026-02-13T03:53:29,297 | %u 2026-02-13T03:53:29,298 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2026-02-13T03:53:29,298 679 | maplength, (size_t) b * unitsz_distf_mapped); 2026-02-13T03:53:29,298 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:29,298 | | 2026-02-13T03:53:29,298 | unsigned int 2026-02-13T03:53:29,301 command_dist.c:715:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2026-02-13T03:53:29,301 715 | for (int n = 0; n < fco_pos[k + 1] - fco_pos[k]; n++) { 2026-02-13T03:53:29,302 | ^ 2026-02-13T03:53:29,309 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2026-02-13T03:53:29,311 command_dist.c:863:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-02-13T03:53:29,311 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2026-02-13T03:53:29,312 | ~~^ ~~~~~~~ 2026-02-13T03:53:29,312 | | | 2026-02-13T03:53:29,312 | long unsigned int size_t {aka unsigned int} 2026-02-13T03:53:29,312 | %u 2026-02-13T03:53:29,314 command_dist.c:863:93: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-02-13T03:53:29,314 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2026-02-13T03:53:29,315 | ~~^ 2026-02-13T03:53:29,315 | | 2026-02-13T03:53:29,315 | long unsigned int 2026-02-13T03:53:29,315 | %u 2026-02-13T03:53:29,315 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2026-02-13T03:53:29,315 | ~~~~~~~~~ 2026-02-13T03:53:29,315 | | 2026-02-13T03:53:29,315 | size_t {aka unsigned int} 2026-02-13T03:53:29,318 command_dist.c:863:98: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2026-02-13T03:53:29,318 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2026-02-13T03:53:29,318 | ~~^ 2026-02-13T03:53:29,318 | | 2026-02-13T03:53:29,318 | long unsigned int 2026-02-13T03:53:29,318 | %u 2026-02-13T03:53:29,318 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2026-02-13T03:53:29,318 865 | (size_t) b * unitsz_distf_mapped); 2026-02-13T03:53:29,319 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:29,319 | | 2026-02-13T03:53:29,319 | unsigned int 2026-02-13T03:53:29,321 command_dist.c:810:13: warning: unused variable ‘fco_pos’ [-Wunused-variable] 2026-02-13T03:53:29,321 810 | size_t *fco_pos = malloc(sizeof(size_t) * (co_dstat_readin.infile_num + 1)); 2026-02-13T03:53:29,321 | ^~~~~~~ 2026-02-13T03:53:29,322 command_dist.c:809:17: warning: unused variable ‘cbd_fcode_stat’ [-Wunused-variable] 2026-02-13T03:53:29,322 809 | struct stat cbd_fcode_stat; 2026-02-13T03:53:29,322 | ^~~~~~~~~~~~~~ 2026-02-13T03:53:29,323 command_dist.c:808:31: warning: unused variable ‘cbd_fcode_comp_index_fp’ [-Wunused-variable] 2026-02-13T03:53:29,323 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2026-02-13T03:53:29,323 | ^~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:29,324 command_dist.c:808:11: warning: unused variable ‘cbd_fcode_comp_fp’ [-Wunused-variable] 2026-02-13T03:53:29,324 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2026-02-13T03:53:29,324 | ^~~~~~~~~~~~~~~~~ 2026-02-13T03:53:29,331 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2026-02-13T03:53:29,334 command_dist.c:1018:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-02-13T03:53:29,334 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2026-02-13T03:53:29,334 | ~~^ 2026-02-13T03:53:29,334 | | 2026-02-13T03:53:29,334 | long unsigned int 2026-02-13T03:53:29,334 | %u 2026-02-13T03:53:29,335 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2026-02-13T03:53:29,335 | ~~~~~~~ 2026-02-13T03:53:29,335 | | 2026-02-13T03:53:29,335 | size_t {aka unsigned int} 2026-02-13T03:53:29,337 command_dist.c:1018:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-02-13T03:53:29,337 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2026-02-13T03:53:29,337 | ~~^ 2026-02-13T03:53:29,337 | | 2026-02-13T03:53:29,338 | long unsigned int 2026-02-13T03:53:29,338 | %u 2026-02-13T03:53:29,338 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2026-02-13T03:53:29,338 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2026-02-13T03:53:29,338 | ~~~~~~~~~ 2026-02-13T03:53:29,338 | | 2026-02-13T03:53:29,338 | size_t {aka unsigned int} 2026-02-13T03:53:29,340 command_dist.c:1018:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2026-02-13T03:53:29,340 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2026-02-13T03:53:29,340 | ~~^ 2026-02-13T03:53:29,341 | | 2026-02-13T03:53:29,341 | long unsigned int 2026-02-13T03:53:29,341 | %u 2026-02-13T03:53:29,341 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2026-02-13T03:53:29,341 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2026-02-13T03:53:29,341 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:29,341 | | 2026-02-13T03:53:29,341 | unsigned int 2026-02-13T03:53:29,346 command_dist.c: In function ‘mco_co_dist_core’: 2026-02-13T03:53:29,347 command_dist.c:1116:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘gidobj_t’ {aka ‘unsigned int’} [-Wsign-compare] 2026-02-13T03:53:29,348 1116 | for (int k = 1; k < unit_arrmco[ind][0] + 1; k++) { 2026-02-13T03:53:29,348 | ^ 2026-02-13T03:53:29,349 command_dist.c: In function ‘fname_dist_print’: 2026-02-13T03:53:29,350 command_dist.c:1163:25: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘__off64_t’ {aka ‘long long int’} [-Wsign-compare] 2026-02-13T03:53:29,350 1163 | for (llong i = 0; i < s.st_size / sizeof(ctx_obj_ct_t); i++) { 2026-02-13T03:53:29,351 | ^ 2026-02-13T03:53:29,355 command_dist.c: In function ‘koc_dist_print_nobin’: 2026-02-13T03:53:29,357 command_dist.c:1239:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2026-02-13T03:53:29,357 1239 | for (int rid = 0; rid < ref_num; rid++) 2026-02-13T03:53:29,357 | ^ 2026-02-13T03:53:29,359 command_dist.c:1245:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2026-02-13T03:53:29,359 1245 | for (int rid = 0; rid < ref_num; rid++) { 2026-02-13T03:53:29,359 | ^ 2026-02-13T03:53:29,365 command_dist.c: In function ‘dist_print_nobin’: 2026-02-13T03:53:29,367 command_dist.c:1335:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2026-02-13T03:53:29,367 1335 | if ((N_max > NREF) || (N_max > ref_num)) { 2026-02-13T03:53:29,367 | ^ 2026-02-13T03:53:29,370 command_dist.c:1356:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2026-02-13T03:53:29,370 1356 | for (int rid = 0; rid < ref_num; rid++) { 2026-02-13T03:53:29,370 | ^ 2026-02-13T03:53:29,372 command_dist.c:1382:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2026-02-13T03:53:29,372 1382 | for (int rid = 0; rid < ref_num; rid++) 2026-02-13T03:53:29,372 | ^ 2026-02-13T03:53:29,762 command_dist.c: In function ‘run_stageI._omp_fn.1’: 2026-02-13T03:53:29,762 command_dist.c:403:21: warning: ‘com_abund_fp’ may be used uninitialized [-Wmaybe-uninitialized] 2026-02-13T03:53:29,762 403 | fwrite(tmp_mem, sizeof(unsigned short) * tmpkmerct, 1, com_abund_fp); 2026-02-13T03:53:29,762 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:29,762 command_dist.c:375:40: note: ‘com_abund_fp’ was declared here 2026-02-13T03:53:29,763 375 | FILE *com_cofp, *indexfp, *com_abund_fp; 2026-02-13T03:53:29,763 | ^~~~~~~~~~~~ 2026-02-13T03:53:30,567 command_dist.c: In function ‘get_dim_shuffle’: 2026-02-13T03:53:30,568 command_dist.c:267:36: warning: ‘%s’ directive writing up to 264 bytes into a region of size 256 [-Wformat-overflow=] 2026-02-13T03:53:30,568 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2026-02-13T03:53:30,568 | ^~ ~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:30,568 command_dist.c:267:9: note: ‘sprintf’ output between 6 and 270 bytes into a destination of size 256 2026-02-13T03:53:30,568 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2026-02-13T03:53:30,568 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:31,485 command_dist.c: In function ‘mco_cbd_co_dist’: 2026-02-13T03:53:31,486 command_dist.c:596:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:31,486 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2026-02-13T03:53:31,487 | ^~ ~~~~~~~~~ 2026-02-13T03:53:31,487 command_dist.c:596:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2026-02-13T03:53:31,487 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2026-02-13T03:53:31,487 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:31,488 command_dist.c:625:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-02-13T03:53:31,488 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2026-02-13T03:53:31,488 | ^~~~~~~~~~~~~~~ 2026-02-13T03:53:31,489 command_dist.c:625:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2026-02-13T03:53:31,489 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2026-02-13T03:53:31,489 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:31,491 command_dist.c:681:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-02-13T03:53:31,491 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2026-02-13T03:53:31,491 | ^~~~~~~~~~~ 2026-02-13T03:53:31,492 command_dist.c:681:38: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:31,492 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2026-02-13T03:53:31,492 | ^~~~~~~~~~~~~~~~~ 2026-02-13T03:53:31,493 command_dist.c:681:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2026-02-13T03:53:31,493 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2026-02-13T03:53:31,493 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:31,494 command_dist.c:682:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-02-13T03:53:31,494 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2026-02-13T03:53:31,494 | ^~~~~ 2026-02-13T03:53:31,495 command_dist.c:682:32: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:31,495 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2026-02-13T03:53:31,495 | ^~~~~~~~~~~ 2026-02-13T03:53:31,496 command_dist.c:682:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2026-02-13T03:53:31,496 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2026-02-13T03:53:31,496 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:31,741 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2026-02-13T03:53:31,743 command_dist.c:763:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:31,743 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2026-02-13T03:53:31,743 | ^~ ~~~~~~~~~ 2026-02-13T03:53:31,744 command_dist.c:763:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2026-02-13T03:53:31,744 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2026-02-13T03:53:31,744 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:31,745 command_dist.c:790:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-02-13T03:53:31,745 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2026-02-13T03:53:31,745 | ^~~~~~~~~~~~~~~ 2026-02-13T03:53:31,746 command_dist.c:790:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2026-02-13T03:53:31,746 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2026-02-13T03:53:31,746 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:31,747 command_dist.c:823:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-02-13T03:53:31,747 823 | sprintf(distf, "%s/distance.out", distout_dir); 2026-02-13T03:53:31,747 | ^~~~~~~~~~~~~ 2026-02-13T03:53:31,748 command_dist.c:823:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2026-02-13T03:53:31,748 823 | sprintf(distf, "%s/distance.out", distout_dir); 2026-02-13T03:53:31,749 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:31,750 command_dist.c:849:39: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:31,750 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2026-02-13T03:53:31,750 | ^ 2026-02-13T03:53:31,751 command_dist.c:849:33: note: directive argument in the range [0, 536870912] 2026-02-13T03:53:31,751 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2026-02-13T03:53:31,751 | ^~~~~~~~~~ 2026-02-13T03:53:31,752 command_dist.c:849:8: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2026-02-13T03:53:31,752 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2026-02-13T03:53:31,752 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:31,753 command_dist.c:851:34: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:31,753 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2026-02-13T03:53:31,753 | ^ 2026-02-13T03:53:31,754 command_dist.c:851:28: note: directive argument in the range [0, 536870912] 2026-02-13T03:53:31,754 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2026-02-13T03:53:31,755 | ^~~~~~~~~~ 2026-02-13T03:53:31,755 command_dist.c:851:9: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2026-02-13T03:53:31,756 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2026-02-13T03:53:31,756 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:32,022 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2026-02-13T03:53:32,023 command_dist.c:927:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:32,023 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2026-02-13T03:53:32,024 | ^~ ~~~~~~~~~ 2026-02-13T03:53:32,025 command_dist.c:927:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2026-02-13T03:53:32,025 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2026-02-13T03:53:32,025 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:32,026 command_dist.c:956:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-02-13T03:53:32,026 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2026-02-13T03:53:32,026 | ^~~~~~~~~~~~~~~ 2026-02-13T03:53:32,027 command_dist.c:956:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2026-02-13T03:53:32,027 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2026-02-13T03:53:32,027 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:32,029 command_dist.c:990:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-02-13T03:53:32,029 990 | sprintf(distf, "%s/distance.out", distout_dir); 2026-02-13T03:53:32,029 | ^~~~~~~~~~~~~ 2026-02-13T03:53:32,030 command_dist.c:990:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2026-02-13T03:53:32,030 990 | sprintf(distf, "%s/distance.out", distout_dir); 2026-02-13T03:53:32,030 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:32,032 command_dist.c:1022:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-02-13T03:53:32,033 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2026-02-13T03:53:32,033 | ^~~~~~~~~~~ 2026-02-13T03:53:32,034 command_dist.c:1022:38: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:32,034 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2026-02-13T03:53:32,034 | ^~~~~~~~~~~~~~~~~ 2026-02-13T03:53:32,035 command_dist.c:1022:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2026-02-13T03:53:32,035 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2026-02-13T03:53:32,035 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:32,037 command_dist.c:1023:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-02-13T03:53:32,037 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2026-02-13T03:53:32,037 | ^~~~~ 2026-02-13T03:53:32,038 command_dist.c:1023:32: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:32,038 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2026-02-13T03:53:32,038 | ^~~~~~~~~~~ 2026-02-13T03:53:32,039 command_dist.c:1023:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2026-02-13T03:53:32,039 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2026-02-13T03:53:32,040 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:32,316 command_dist.c: In function ‘combine_queries’: 2026-02-13T03:53:32,318 command_dist.c:1492:41: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-02-13T03:53:32,318 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2026-02-13T03:53:32,318 | ^ 2026-02-13T03:53:32,320 command_dist.c:1492:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-02-13T03:53:32,320 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2026-02-13T03:53:32,320 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:32,322 command_dist.c:1499:40: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-02-13T03:53:32,322 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2026-02-13T03:53:32,322 | ^ 2026-02-13T03:53:32,324 command_dist.c:1499:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-02-13T03:53:32,324 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2026-02-13T03:53:32,324 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:32,327 command_dist.c:1603:32: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:32,327 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2026-02-13T03:53:32,328 | ^~ ~~~~~~~~ 2026-02-13T03:53:32,329 command_dist.c:1603:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2026-02-13T03:53:32,330 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2026-02-13T03:53:32,330 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:32,819 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_dist_wrapper.c -o build/temp.linux-armv7l-cpython-313/command_dist_wrapper.o -fopenmp 2026-02-13T03:53:32,999 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_set.c -o build/temp.linux-armv7l-cpython-313/command_set.o -fopenmp 2026-02-13T03:53:33,402 command_set.c: In function ‘sketch_operate’: 2026-02-13T03:53:33,402 command_set.c:178:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2026-02-13T03:53:33,402 178 | for(int n = 0; n < fco_pos[i+1] - fco_pos[i]; n++){ 2026-02-13T03:53:33,402 | ^ 2026-02-13T03:53:33,414 command_set.c: In function ‘combin_subset_pans’: 2026-02-13T03:53:33,415 command_set.c:457:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2026-02-13T03:53:33,415 457 | free(co_dstat_fpath); 2026-02-13T03:53:33,415 | ^~~~~~~~~~~~~~ 2026-02-13T03:53:33,416 In file included from kssdheaders/global_basic.h:159, 2026-02-13T03:53:33,416 from command_set.c:15: 2026-02-13T03:53:33,416 /usr/include/stdlib.h:687:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2026-02-13T03:53:33,416 687 | extern void free (void *__ptr) __THROW; 2026-02-13T03:53:33,417 | ~~~~~~^~~~~ 2026-02-13T03:53:33,424 command_set.c: In function ‘grouping_genomes’: 2026-02-13T03:53:33,425 command_set.c:562:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2026-02-13T03:53:33,425 562 | free(co_dstat_fpath); 2026-02-13T03:53:33,425 | ^~~~~~~~~~~~~~ 2026-02-13T03:53:33,425 /usr/include/stdlib.h:687:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2026-02-13T03:53:33,425 687 | extern void free (void *__ptr) __THROW; 2026-02-13T03:53:33,425 | ~~~~~~^~~~~ 2026-02-13T03:53:33,609 command_set.c: In function ‘sketch_union’: 2026-02-13T03:53:33,610 command_set.c:71:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-02-13T03:53:33,610 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2026-02-13T03:53:33,610 | ^ 2026-02-13T03:53:33,610 command_set.c:71:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-02-13T03:53:33,610 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2026-02-13T03:53:33,610 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:33,610 command_set.c:82:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:33,610 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2026-02-13T03:53:33,610 | ^~ ~~~~~~~~~~~ 2026-02-13T03:53:33,611 command_set.c:82:25: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:33,611 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2026-02-13T03:53:33,611 | ^~~~~~~~~~ 2026-02-13T03:53:33,611 command_set.c:82:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-02-13T03:53:33,611 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2026-02-13T03:53:33,611 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:33,611 command_set.c:92:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:33,611 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2026-02-13T03:53:33,611 | ^~ ~~~~~~~~~~ 2026-02-13T03:53:33,611 command_set.c:92:25: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:33,612 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2026-02-13T03:53:33,612 | ^~~~~~~~~~ 2026-02-13T03:53:33,612 command_set.c:92:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2026-02-13T03:53:33,612 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2026-02-13T03:53:33,612 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:33,741 command_set.c: In function ‘sketch_operate’: 2026-02-13T03:53:33,741 command_set.c:153:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:33,741 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2026-02-13T03:53:33,741 | ^~ ~~~~~~~~~~ 2026-02-13T03:53:33,742 command_set.c:153:25: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:33,742 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2026-02-13T03:53:33,742 | ^~~~~~~~~~ 2026-02-13T03:53:33,742 command_set.c:153:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2026-02-13T03:53:33,742 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2026-02-13T03:53:33,742 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:33,742 command_set.c:155:33: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:33,742 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2026-02-13T03:53:33,742 | ^~ ~~~~~~~~~~~~~~~ 2026-02-13T03:53:33,742 command_set.c:155:29: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:33,743 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2026-02-13T03:53:33,743 | ^~~~~~~~~~ 2026-02-13T03:53:33,743 command_set.c:155:13: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2026-02-13T03:53:33,743 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2026-02-13T03:53:33,743 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:33,743 command_set.c:165:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:33,743 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2026-02-13T03:53:33,743 | ^~ ~~~~~~~~~~~ 2026-02-13T03:53:33,743 command_set.c:165:25: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:33,743 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2026-02-13T03:53:33,743 | ^~~~~~~~~~~~~~~~ 2026-02-13T03:53:33,744 command_set.c:165:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2026-02-13T03:53:33,744 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2026-02-13T03:53:33,744 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:33,744 command_set.c:169:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:33,744 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2026-02-13T03:53:33,744 | ^~ ~~~~~~~~~~~ 2026-02-13T03:53:33,744 command_set.c:169:25: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:33,744 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2026-02-13T03:53:33,744 | ^~~~~~~~~~ 2026-02-13T03:53:33,744 command_set.c:169:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-02-13T03:53:33,744 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2026-02-13T03:53:33,745 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:33,745 command_set.c:174:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:33,745 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2026-02-13T03:53:33,745 | ^~ ~~~~~~~~~~~ 2026-02-13T03:53:33,745 command_set.c:174:25: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:33,745 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2026-02-13T03:53:33,745 | ^~~~~~~~~~ 2026-02-13T03:53:33,745 command_set.c:174:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-02-13T03:53:33,745 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2026-02-13T03:53:33,745 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:33,746 command_set.c:187:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:33,746 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2026-02-13T03:53:33,746 | ^~ ~~~~~~~~~~~ 2026-02-13T03:53:33,746 command_set.c:187:25: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:33,746 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2026-02-13T03:53:33,746 | ^~~~~~~~~~~~~~~~ 2026-02-13T03:53:33,746 command_set.c:187:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2026-02-13T03:53:33,746 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2026-02-13T03:53:33,746 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:33,746 command_set.c:192:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-02-13T03:53:33,746 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-02-13T03:53:33,747 | ^ 2026-02-13T03:53:33,747 command_set.c:192:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-02-13T03:53:33,747 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-02-13T03:53:33,747 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:33,913 command_set.c: In function ‘uniq_sketch_union’: 2026-02-13T03:53:33,913 command_set.c:219:39: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-02-13T03:53:33,913 219 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2026-02-13T03:53:33,913 | ^ 2026-02-13T03:53:33,913 command_set.c:219:17: note: ‘sprintf’ output between 11 and 21 bytes into a destination of size 20 2026-02-13T03:53:33,914 219 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2026-02-13T03:53:33,914 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:33,914 command_set.c:234:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-02-13T03:53:33,914 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2026-02-13T03:53:33,914 | ^ 2026-02-13T03:53:33,914 command_set.c:234:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-02-13T03:53:33,914 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2026-02-13T03:53:33,914 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:33,915 command_set.c:247:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:33,915 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2026-02-13T03:53:33,915 | ^~ ~~~~~~~~~~~ 2026-02-13T03:53:33,915 command_set.c:247:25: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:33,915 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2026-02-13T03:53:33,915 | ^~~~~~~~~~ 2026-02-13T03:53:33,915 command_set.c:247:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-02-13T03:53:33,916 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2026-02-13T03:53:33,916 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:33,916 command_set.c:259:29: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:33,916 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2026-02-13T03:53:33,916 | ^~ ~~~~~~~~~~~~~~~ 2026-02-13T03:53:33,916 command_set.c:259:25: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:33,916 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2026-02-13T03:53:33,916 | ^~~~~~~~~~ 2026-02-13T03:53:33,917 command_set.c:259:9: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2026-02-13T03:53:33,917 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2026-02-13T03:53:33,917 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:34,057 command_set.c: In function ‘combin_pans’: 2026-02-13T03:53:34,058 command_set.c:297:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:34,058 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-02-13T03:53:34,058 | ^~ ~~~~~~~~~~~ 2026-02-13T03:53:34,058 command_set.c:297:25: note: directive argument in the range [0, 1073741823] 2026-02-13T03:53:34,058 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-02-13T03:53:34,058 | ^~~~~~~~~~ 2026-02-13T03:53:34,058 command_set.c:297:9: note: ‘sprintf’ output between 10 and 274 bytes into a destination of size 256 2026-02-13T03:53:34,059 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-02-13T03:53:34,059 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:34,059 command_set.c:300:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:34,059 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-02-13T03:53:34,059 | ^~ ~~~~~~~~~~ 2026-02-13T03:53:34,059 command_set.c:300:25: note: directive argument in the range [0, 1073741823] 2026-02-13T03:53:34,060 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-02-13T03:53:34,060 | ^~~~~~~~~~ 2026-02-13T03:53:34,060 command_set.c:300:9: note: ‘sprintf’ output between 16 and 280 bytes into a destination of size 256 2026-02-13T03:53:34,060 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-02-13T03:53:34,060 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:34,061 command_set.c:342:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-02-13T03:53:34,061 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-02-13T03:53:34,061 | ^ 2026-02-13T03:53:34,061 command_set.c:342:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-02-13T03:53:34,061 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-02-13T03:53:34,061 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:34,278 command_set.c: In function ‘combin_subset_pans’: 2026-02-13T03:53:34,278 command_set.c:469:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:34,279 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2026-02-13T03:53:34,279 | ^~ ~~~~~~~~~~~ 2026-02-13T03:53:34,279 command_set.c:469:25: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:34,279 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2026-02-13T03:53:34,279 | ^~~~~~~~~~ 2026-02-13T03:53:34,280 command_set.c:469:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-02-13T03:53:34,280 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2026-02-13T03:53:34,280 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:34,281 command_set.c:475:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:34,281 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2026-02-13T03:53:34,281 | ^~ ~~~~~~~~~~ 2026-02-13T03:53:34,281 command_set.c:475:25: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:34,281 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2026-02-13T03:53:34,281 | ^~~~~~~~~~ 2026-02-13T03:53:34,282 command_set.c:475:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2026-02-13T03:53:34,282 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2026-02-13T03:53:34,282 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:34,283 command_set.c:481:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:34,283 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-02-13T03:53:34,283 | ^~ ~~~~~~~~~~~ 2026-02-13T03:53:34,283 command_set.c:481:25: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:34,283 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-02-13T03:53:34,284 | ^~~~~~~~~~ 2026-02-13T03:53:34,284 command_set.c:481:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-02-13T03:53:34,284 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-02-13T03:53:34,284 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:34,285 command_set.c:512:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:34,285 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-02-13T03:53:34,285 | ^~ ~~~~~~~~~~ 2026-02-13T03:53:34,286 command_set.c:512:25: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:34,286 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-02-13T03:53:34,286 | ^~~~~~~~~~ 2026-02-13T03:53:34,286 command_set.c:512:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2026-02-13T03:53:34,287 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-02-13T03:53:34,287 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:34,287 command_set.c:523:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-02-13T03:53:34,287 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-02-13T03:53:34,287 | ^ 2026-02-13T03:53:34,288 command_set.c:523:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-02-13T03:53:34,288 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-02-13T03:53:34,288 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:34,524 command_set.c: In function ‘grouping_genomes’: 2026-02-13T03:53:34,525 command_set.c:574:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:34,525 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2026-02-13T03:53:34,525 | ^~ ~~~~~~~~~~~ 2026-02-13T03:53:34,526 command_set.c:574:25: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:34,526 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2026-02-13T03:53:34,526 | ^~~~~~~~~~ 2026-02-13T03:53:34,526 command_set.c:574:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-02-13T03:53:34,526 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2026-02-13T03:53:34,526 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:34,527 command_set.c:580:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:34,527 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2026-02-13T03:53:34,528 | ^~ ~~~~~~~~~~ 2026-02-13T03:53:34,528 command_set.c:580:25: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:34,528 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2026-02-13T03:53:34,528 | ^~~~~~~~~~ 2026-02-13T03:53:34,529 command_set.c:580:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2026-02-13T03:53:34,529 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2026-02-13T03:53:34,529 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:34,530 command_set.c:612:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:34,530 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-02-13T03:53:34,531 | ^~ ~~~~~~~~~~~ 2026-02-13T03:53:34,531 command_set.c:612:25: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:34,531 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-02-13T03:53:34,531 | ^~~~~~~~~~ 2026-02-13T03:53:34,532 command_set.c:612:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-02-13T03:53:34,532 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-02-13T03:53:34,532 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:34,533 command_set.c:634:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T03:53:34,533 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-02-13T03:53:34,533 | ^~ ~~~~~~~~~~ 2026-02-13T03:53:34,534 command_set.c:634:25: note: directive argument in the range [-2147483641, 2147483646] 2026-02-13T03:53:34,534 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-02-13T03:53:34,534 | ^~~~~~~~~~ 2026-02-13T03:53:34,535 command_set.c:634:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2026-02-13T03:53:34,535 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-02-13T03:53:34,535 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:34,536 command_set.c:645:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-02-13T03:53:34,536 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-02-13T03:53:34,536 | ^ 2026-02-13T03:53:34,536 command_set.c:645:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-02-13T03:53:34,537 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-02-13T03:53:34,537 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T03:53:34,815 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_shuffle.c -o build/temp.linux-armv7l-cpython-313/command_shuffle.o -fopenmp 2026-02-13T03:53:35,128 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c global_basic.c -o build/temp.linux-armv7l-cpython-313/global_basic.o -fopenmp 2026-02-13T03:53:35,301 global_basic.c: In function ‘organize_infile_list’: 2026-02-13T03:53:35,302 global_basic.c:195:20: error: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 2026-02-13T03:53:35,302 195 | while (isspace(*buf)) buf++; 2026-02-13T03:53:35,302 | ^~~~~~~ 2026-02-13T03:53:35,302 global_basic.c:35:1: note: include ‘’ or provide a declaration of ‘isspace’ 2026-02-13T03:53:35,302 34 | #include 2026-02-13T03:53:35,302 +++ |+#include 2026-02-13T03:53:35,302 35 | 2026-02-13T03:53:35,302 global_basic.c:201:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-02-13T03:53:35,303 201 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2026-02-13T03:53:35,303 | ~~^ 2026-02-13T03:53:35,303 | | 2026-02-13T03:53:35,303 | long unsigned int 2026-02-13T03:53:35,303 | %u 2026-02-13T03:53:35,303 202 | list_path, file_num, buf, strlen(buf), PATHLEN); 2026-02-13T03:53:35,303 | ~~~~~~~~~~~ 2026-02-13T03:53:35,303 | | 2026-02-13T03:53:35,303 | size_t {aka unsigned int} 2026-02-13T03:53:35,304 global_basic.c:233:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-02-13T03:53:35,304 233 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2026-02-13T03:53:35,304 | ~~^ 2026-02-13T03:53:35,304 | | 2026-02-13T03:53:35,304 | long unsigned int 2026-02-13T03:53:35,305 | %u 2026-02-13T03:53:35,305 234 | list_path, file_num, buf, strlen(buf), PATHLEN); 2026-02-13T03:53:35,305 | ~~~~~~~~~~~ 2026-02-13T03:53:35,305 | | 2026-02-13T03:53:35,305 | size_t {aka unsigned int} 2026-02-13T03:53:35,328 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2026-02-13T03:53:35,486 ERROR: python setup.py bdist_wheel exited with 1 2026-02-13T03:53:35,498 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2026-02-13T03:53:35,498 exec(compile('"'"''"'"''"'"' 2026-02-13T03:53:35,498 # This is -- a caller that pip uses to run setup.py 2026-02-13T03:53:35,498 # 2026-02-13T03:53:35,498 # - It imports setuptools before invoking setup.py, to enable projects that directly 2026-02-13T03:53:35,498 # import from `distutils.core` to work with newer packaging standards. 2026-02-13T03:53:35,498 # - It provides a clear error message when setuptools is not installed. 2026-02-13T03:53:35,498 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2026-02-13T03:53:35,498 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2026-02-13T03:53:35,498 # manifest_maker: standard file '"'"'-c'"'"' not found". 2026-02-13T03:53:35,498 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2026-02-13T03:53:35,498 import os, sys, tokenize, traceback 2026-02-13T03:53:35,498 2026-02-13T03:53:35,498 try: 2026-02-13T03:53:35,498 import setuptools 2026-02-13T03:53:35,498 except ImportError: 2026-02-13T03:53:35,498 print( 2026-02-13T03:53:35,498 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2026-02-13T03:53:35,498 "the build environment with exception:", 2026-02-13T03:53:35,498 file=sys.stderr, 2026-02-13T03:53:35,498 ) 2026-02-13T03:53:35,498 traceback.print_exc() 2026-02-13T03:53:35,498 sys.exit(1) 2026-02-13T03:53:35,498 2026-02-13T03:53:35,498 __file__ = %r 2026-02-13T03:53:35,498 sys.argv[0] = __file__ 2026-02-13T03:53:35,498 2026-02-13T03:53:35,498 if os.path.exists(__file__): 2026-02-13T03:53:35,498 filename = __file__ 2026-02-13T03:53:35,498 with tokenize.open(__file__) as f: 2026-02-13T03:53:35,498 setup_py_code = f.read() 2026-02-13T03:53:35,498 else: 2026-02-13T03:53:35,498 filename = "" 2026-02-13T03:53:35,498 setup_py_code = "from setuptools import setup; setup()" 2026-02-13T03:53:35,498 2026-02-13T03:53:35,498 exec(compile(setup_py_code, filename, "exec")) 2026-02-13T03:53:35,498 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-gfzqmomz/kssdtree_138c271435174020a019dcd9db697832/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-hs6v7f8f[/] 2026-02-13T03:53:35,499 [bold magenta]cwd[/]: /tmp/pip-wheel-gfzqmomz/kssdtree_138c271435174020a019dcd9db697832/ 2026-02-13T03:53:35,499 Building wheel for kssdtree (setup.py): finished with status 'error' 2026-02-13T03:53:35,499 ERROR: Failed building wheel for kssdtree 2026-02-13T03:53:35,500 Running setup.py clean for kssdtree 2026-02-13T03:53:35,501 Running command python setup.py clean 2026-02-13T03:53:36,677 running clean 2026-02-13T03:53:36,823 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2026-02-13T03:53:36,824 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2026-02-13T03:53:36,824 'build/bdist.linux-armv7l' does not exist -- can't clean it 2026-02-13T03:53:36,824 'build/scripts-3.13' does not exist -- can't clean it 2026-02-13T03:53:36,824 removing 'build' 2026-02-13T03:53:36,938 Failed to build kssdtree 2026-02-13T03:53:36,939 ERROR: Failed to build one or more wheels 2026-02-13T03:53:36,940 Exception information: 2026-02-13T03:53:36,940 Traceback (most recent call last): 2026-02-13T03:53:36,940 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2026-02-13T03:53:36,940 status = _inner_run() 2026-02-13T03:53:36,940 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2026-02-13T03:53:36,940 return self.run(options, args) 2026-02-13T03:53:36,940 ~~~~~~~~^^^^^^^^^^^^^^^ 2026-02-13T03:53:36,940 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2026-02-13T03:53:36,940 return func(self, options, args) 2026-02-13T03:53:36,940 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2026-02-13T03:53:36,940 raise CommandError("Failed to build one or more wheels") 2026-02-13T03:53:36,940 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2026-02-13T03:53:36,944 Removed build tracker: '/tmp/pip-build-tracker-evlx1blm'