2026-02-13T04:56:45,714 Created temporary directory: /tmp/pip-ephem-wheel-cache-9_4vi_cv 2026-02-13T04:56:45,720 Created temporary directory: /tmp/pip-req-tracker-2o4w2_o2 2026-02-13T04:56:45,720 Initialized build tracking at /tmp/pip-req-tracker-2o4w2_o2 2026-02-13T04:56:45,721 Created build tracker: /tmp/pip-req-tracker-2o4w2_o2 2026-02-13T04:56:45,721 Entered build tracker: /tmp/pip-req-tracker-2o4w2_o2 2026-02-13T04:56:45,722 Created temporary directory: /tmp/pip-wheel-b_ay5536 2026-02-13T04:56:45,767 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple, https://www.piwheels.org/simple 2026-02-13T04:56:45,772 2 location(s) to search for versions of kssdtree: 2026-02-13T04:56:45,772 * https://pypi.org/simple/kssdtree/ 2026-02-13T04:56:45,772 * https://www.piwheels.org/simple/kssdtree/ 2026-02-13T04:56:45,772 Fetching project page and analyzing links: https://pypi.org/simple/kssdtree/ 2026-02-13T04:56:45,773 Getting page https://pypi.org/simple/kssdtree/ 2026-02-13T04:56:45,776 Found index url https://pypi.org/simple 2026-02-13T04:56:45,786 Starting new HTTPS connection (1): pypi.org:443 2026-02-13T04:56:45,958 https://pypi.org:443 "GET /simple/kssdtree/ HTTP/1.1" 200 1979 2026-02-13T04:56:46,140 Found link https://files.pythonhosted.org/packages/d5/1e/9e5c5945a44bb40002d1c259f734a531999fa6e87db89fe7c7ddcfc583cc/kssdtree-1.1.1.tar.gz#sha256=bf3cab86e89b6b582ba9ad245264808902efb41c875aaf6d730fbc10cb019cde (from https://pypi.org/simple/kssdtree/), version: 1.1.1 2026-02-13T04:56:46,141 Found link https://files.pythonhosted.org/packages/9a/4c/6516f734f5860e4b30f9091aaac5811663bfae72c4de4ae6566c89192767/kssdtree-1.1.2.tar.gz#sha256=42effc7c897303a981c9746cd854a6a4fd5ff5905b46c20fbc6ce1f7d45c3ea7 (from https://pypi.org/simple/kssdtree/), version: 1.1.2 2026-02-13T04:56:46,141 Found link https://files.pythonhosted.org/packages/a4/cd/f2954686c636e853cc3fda197c459195377b78288874cf7d68218a8bdbf4/kssdtree-1.1.3.tar.gz#sha256=0ffe4a29d67de8ca6c6cfcca8b7fd9d764b46c62c8d8d0a4bda87cd7a0709775 (from https://pypi.org/simple/kssdtree/), version: 1.1.3 2026-02-13T04:56:46,142 Found link https://files.pythonhosted.org/packages/20/ea/b0301924e3f7d367cbb7b8da66837dba9af2a332bf56ed35e03a33faee76/kssdtree-1.1.4.tar.gz#sha256=741fd7c1babd190fd158a8bd59c22ee769efb8f675d709537c387effb05b6049 (from https://pypi.org/simple/kssdtree/), version: 1.1.4 2026-02-13T04:56:46,143 Found link https://files.pythonhosted.org/packages/41/65/ed35110b84bc0dd02b9add0104f10160754d2ea0882191767d512146a884/kssdtree-1.1.6.tar.gz#sha256=e1a0baf89155dd739cae854bebc7f95220d4b39d8d8e72f8c9165ea3be628406 (from https://pypi.org/simple/kssdtree/), version: 1.1.6 2026-02-13T04:56:46,144 Found link https://files.pythonhosted.org/packages/cd/4b/d886cbcc573ff0969da7d9c756049925b86141e60ee6708dfbbe0644d008/kssdtree-1.1.7.tar.gz#sha256=1662c719840f11eb8d59f87b4a094387e210884c1c563124c7d2446ab45b77e0 (from https://pypi.org/simple/kssdtree/), version: 1.1.7 2026-02-13T04:56:46,144 Found link https://files.pythonhosted.org/packages/7e/8a/a62c8adc92df69ab8cb242827ee64a3e2b6d5c89b83425785dd00605af17/kssdtree-1.1.8.tar.gz#sha256=13e9d672c59aee331866ef4bacade5dce00cc0786e76216cd505c61a745f2d9e (from https://pypi.org/simple/kssdtree/), version: 1.1.8 2026-02-13T04:56:46,145 Found link https://files.pythonhosted.org/packages/da/db/e458cca6427752c05428d2378ccdee631d32f760174fdaba65f73125e71b/kssdtree-1.1.9.tar.gz#sha256=7d2369e6115ef2cfa4661b11353ad5d8c3f240da20c005ec0e0b7388ebc3b1df (from https://pypi.org/simple/kssdtree/), version: 1.1.9 2026-02-13T04:56:46,146 Found link https://files.pythonhosted.org/packages/9d/47/017180a30e73e421372377cbe6d01c5e51a5108ea2177f20ccd7d283f8d1/kssdtree-2.0.0.tar.gz#sha256=d73856db5284551744e106217cef97b92bb726709da565b8bb360e0787ed81c6 (from https://pypi.org/simple/kssdtree/), version: 2.0.0 2026-02-13T04:56:46,147 Found link https://files.pythonhosted.org/packages/ba/39/d443cac955912a0371c93b797311cb9ec3a8d6ee0a5d7673376d826aa6b2/kssdtree-2.0.1.tar.gz#sha256=a0e75875f56a10b5d752855fefdb5fd136f9e555efbf87e1520fb590fa65fe7b (from https://pypi.org/simple/kssdtree/), version: 2.0.1 2026-02-13T04:56:46,148 Found link https://files.pythonhosted.org/packages/2e/32/e53c0e3735cbc913b2c96b4e0e1c1005fe816a4d71b38b80cdcfb5c67fa8/kssdtree-2.0.2.tar.gz#sha256=9a944c9e7de930f6bd7aae479f03dc38a79aaa7f1e82432936b7b21340775a03 (from https://pypi.org/simple/kssdtree/), version: 2.0.2 2026-02-13T04:56:46,148 Found link https://files.pythonhosted.org/packages/c0/0f/effc10c8e76dbe3b9a35a4b4d9e65a0a889ee805e10334541c3ca7ae3b94/kssdtree-2.0.3.tar.gz#sha256=9efac23369d5f14bca36a1926050821eb9a0cfde618ad226bdb10866a434e1c4 (from https://pypi.org/simple/kssdtree/), version: 2.0.3 2026-02-13T04:56:46,149 Found link https://files.pythonhosted.org/packages/fc/8d/d3790baa2f2f0a01c913005b94a82dc13ef601e7015e662ccff94bb1b458/kssdtree-2.0.4.tar.gz#sha256=e93c66915a3a20a269f05968eaa70e2d88018ca3e6973a85460c388b6b2a09d8 (from https://pypi.org/simple/kssdtree/), version: 2.0.4 2026-02-13T04:56:46,150 Found link https://files.pythonhosted.org/packages/b5/f8/19480a4c57704944f973ebf534f9582054949cca20170a33c6f874974440/kssdtree-2.0.5.tar.gz#sha256=954ce08a38bdae1f847388775c3dbdff1f0e8a68dd0bca5d43a98ab5289fee61 (from https://pypi.org/simple/kssdtree/), version: 2.0.5 2026-02-13T04:56:46,150 Found link https://files.pythonhosted.org/packages/46/ef/2d920d5d2fceded48c7add363e04f49ae85414bcd4360e1295d6fddc4a24/kssdtree-2.0.6.tar.gz#sha256=68b0905094f99ceff73d8186c5b005906b1b8fcf9e70fd0ce266dd700cce1b50 (from https://pypi.org/simple/kssdtree/), version: 2.0.6 2026-02-13T04:56:46,151 Found link https://files.pythonhosted.org/packages/9c/1c/c6b3f05465d145856ac992328bd59e776286a59b120254620c1dbffcf67f/kssdtree-2.0.7.tar.gz#sha256=f304750bc48a344cd83c6b62e93a729299be609f392a3e91ec4c8af460980e90 (from https://pypi.org/simple/kssdtree/), version: 2.0.7 2026-02-13T04:56:46,152 Found link https://files.pythonhosted.org/packages/82/9b/dac2af6572f0c4421e5ba8341dcfddac466de30c62acfa019d9ef70b2670/kssdtree-2.0.8.tar.gz#sha256=8c6c32364cbdb22c18db2dd6a984018e8c6bbc55b25f384f12c5647bb142c1f0 (from https://pypi.org/simple/kssdtree/), version: 2.0.8 2026-02-13T04:56:46,153 Found link https://files.pythonhosted.org/packages/41/14/6350a913694cb9af7e5d542e566286c28d7a96c0b257bf7e19e8cc0400d0/kssdtree-2.0.9.tar.gz#sha256=a3b9195368afd35ab63a65da96f33c1ed038a5e5ffd2f572fcdfd61d4ae81802 (from https://pypi.org/simple/kssdtree/), version: 2.0.9 2026-02-13T04:56:46,153 Found link https://files.pythonhosted.org/packages/2d/27/624f3bdd2bb038c3095130be4908ff39cae2e05bdb693b709b1c87a463ec/kssdtree-2.1.0.tar.gz#sha256=444da6fd0a28a07ce621cd3b11df3c6efa30c17d209e110f1f2550038e1fe365 (from https://pypi.org/simple/kssdtree/), version: 2.1.0 2026-02-13T04:56:46,154 Fetching project page and analyzing links: https://www.piwheels.org/simple/kssdtree/ 2026-02-13T04:56:46,155 Getting page https://www.piwheels.org/simple/kssdtree/ 2026-02-13T04:56:46,157 Found index url https://www.piwheels.org/simple 2026-02-13T04:56:46,161 Starting new HTTPS connection (1): www.piwheels.org:443 2026-02-13T04:56:46,280 https://www.piwheels.org:443 "GET /simple/kssdtree/ HTTP/1.1" 200 2325 2026-02-13T04:56:46,379 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-2.1.0-cp311-cp311-linux_armv6l.whl#sha256=169d23da665645c804665ee8db85ae8198a3f174255c0726286c29a0f454e68e (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,380 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-2.1.0-cp311-cp311-linux_armv7l.whl#sha256=169d23da665645c804665ee8db85ae8198a3f174255c0726286c29a0f454e68e (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,380 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.8-cp311-cp311-linux_armv6l.whl#sha256=af8a0b06198bfd1ce24b078cdad070d5c587b126973ade98efa6ab13b9c2fc32 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,381 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.8-cp311-cp311-linux_armv7l.whl#sha256=af8a0b06198bfd1ce24b078cdad070d5c587b126973ade98efa6ab13b9c2fc32 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,381 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.8-cp39-cp39-linux_armv6l.whl#sha256=fb6f717dcadeee1974e114645ccfca55bc46eb4f46872cea71acc544102be042 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,382 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.8-cp39-cp39-linux_armv7l.whl#sha256=fb6f717dcadeee1974e114645ccfca55bc46eb4f46872cea71acc544102be042 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,383 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.7-cp311-cp311-linux_armv6l.whl#sha256=f267901a8f679be9a77fc090fb1c15f5144a295e5158a4ff2e62e2ba29fec967 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,383 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.7-cp311-cp311-linux_armv7l.whl#sha256=f267901a8f679be9a77fc090fb1c15f5144a295e5158a4ff2e62e2ba29fec967 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,384 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.7-cp39-cp39-linux_armv6l.whl#sha256=27677e716e6d66163d5aa6b6f09a6aaae97d4a8cf4882e9eab54b93800cc3ea8 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,384 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.7-cp39-cp39-linux_armv7l.whl#sha256=27677e716e6d66163d5aa6b6f09a6aaae97d4a8cf4882e9eab54b93800cc3ea8 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,385 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.6-cp311-cp311-linux_armv6l.whl#sha256=e1e02281e0fc8ed3b80b596a811ca2a9b50cb7affb3649479228d59c074c1f94 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,385 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.6-cp311-cp311-linux_armv7l.whl#sha256=e1e02281e0fc8ed3b80b596a811ca2a9b50cb7affb3649479228d59c074c1f94 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,386 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.6-cp39-cp39-linux_armv6l.whl#sha256=6cc8e863f6316aa656790c5fc8a7bb42bbb33d4db4a6256f3e30131b023d5e41 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,386 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.6-cp39-cp39-linux_armv7l.whl#sha256=6cc8e863f6316aa656790c5fc8a7bb42bbb33d4db4a6256f3e30131b023d5e41 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,387 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.5-cp311-cp311-linux_armv6l.whl#sha256=cecf3000ed0ffcd720412023d8de2f213356363c01aa3193441c040ed34353d3 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,387 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.5-cp311-cp311-linux_armv7l.whl#sha256=cecf3000ed0ffcd720412023d8de2f213356363c01aa3193441c040ed34353d3 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,388 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.5-cp39-cp39-linux_armv6l.whl#sha256=db08595adc89347b61965ba36e918055e8a0dc5f6a2b0bdfe16133eb363412d3 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,388 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.5-cp39-cp39-linux_armv7l.whl#sha256=db08595adc89347b61965ba36e918055e8a0dc5f6a2b0bdfe16133eb363412d3 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,389 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.4-cp311-cp311-linux_armv6l.whl#sha256=97a69f799c2d1b7024a9033b8a1e3fc17af4748a1ed726f52397d884303eb870 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,390 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.4-cp311-cp311-linux_armv7l.whl#sha256=97a69f799c2d1b7024a9033b8a1e3fc17af4748a1ed726f52397d884303eb870 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,390 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.4-cp39-cp39-linux_armv6l.whl#sha256=00938a03bead64e58bc1928832b7952b04d844e79b41da12160490c7edbb9e9f (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,391 Skipping link: No binaries permitted for kssdtree: 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https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.2-cp311-cp311-linux_armv7l.whl#sha256=ae7417e30efd12d8c6800d4167141c94a93f1ce51afd5ae9196cdfb6057ca7d2 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,394 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.2-cp39-cp39-linux_armv6l.whl#sha256=599ca3576cae9c0ef5ce475baaee98faa1478f8fd034062ddf88f823c9c91b10 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,395 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.2-cp39-cp39-linux_armv7l.whl#sha256=599ca3576cae9c0ef5ce475baaee98faa1478f8fd034062ddf88f823c9c91b10 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,395 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.1-cp311-cp311-linux_armv6l.whl#sha256=8b8c3190a5a4a010758772e9d53c3c12436541437bc9c503bec9a8f6a007cdcc (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,396 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.1-cp311-cp311-linux_armv7l.whl#sha256=8b8c3190a5a4a010758772e9d53c3c12436541437bc9c503bec9a8f6a007cdcc (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,396 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.0-cp311-cp311-linux_armv6l.whl#sha256=16a2e46376ed2874435371fd57a97405d4b631b35c014b9e395a4528a1e655b8 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,397 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.0-cp311-cp311-linux_armv7l.whl#sha256=16a2e46376ed2874435371fd57a97405d4b631b35c014b9e395a4528a1e655b8 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,398 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.0-cp39-cp39-linux_armv6l.whl#sha256=131de046d905a575216e4344f66d988df06c39a828f970e791ab2dd8ce7c204c (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,398 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.0-cp39-cp39-linux_armv7l.whl#sha256=131de046d905a575216e4344f66d988df06c39a828f970e791ab2dd8ce7c204c (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,399 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.9-cp311-cp311-linux_armv6l.whl#sha256=d4c397f5fcb0af48dbb11b9fb7d7b399cc180d65355b794a8fcc7327e9a7dde1 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,399 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.9-cp311-cp311-linux_armv7l.whl#sha256=d4c397f5fcb0af48dbb11b9fb7d7b399cc180d65355b794a8fcc7327e9a7dde1 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,400 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.9-cp39-cp39-linux_armv6l.whl#sha256=ab11dc15aca2923fe0d60bf11deb134bed4df89280b4ce40ca8e9bf3ca46b168 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,400 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.9-cp39-cp39-linux_armv7l.whl#sha256=ab11dc15aca2923fe0d60bf11deb134bed4df89280b4ce40ca8e9bf3ca46b168 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,401 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.8-cp39-cp39-linux_armv6l.whl#sha256=6b3f5b0e827056c7b589f4fb02c353408efa5892ef4df1c8a54b4cb30331754a (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,401 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.8-cp39-cp39-linux_armv7l.whl#sha256=6b3f5b0e827056c7b589f4fb02c353408efa5892ef4df1c8a54b4cb30331754a (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,402 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.8-cp311-cp311-linux_armv6l.whl#sha256=717afc6606ad3045caac8f3f1cd01a37edd2f01f1cc38bc1bc6c3320882bd392 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,402 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.8-cp311-cp311-linux_armv7l.whl#sha256=717afc6606ad3045caac8f3f1cd01a37edd2f01f1cc38bc1bc6c3320882bd392 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,403 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.7-cp311-cp311-linux_armv6l.whl#sha256=388a8dabd657ea83e6d22b52300337c74e9d84e506806cfd4d2a76eb98777e17 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,403 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.7-cp311-cp311-linux_armv7l.whl#sha256=388a8dabd657ea83e6d22b52300337c74e9d84e506806cfd4d2a76eb98777e17 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,404 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.7-cp39-cp39-linux_armv6l.whl#sha256=e1df896451d30c12e01aceb3eb91f0f7dfe0ee6f16fd66864fdefbc21cc54856 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,404 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.7-cp39-cp39-linux_armv7l.whl#sha256=e1df896451d30c12e01aceb3eb91f0f7dfe0ee6f16fd66864fdefbc21cc54856 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,405 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp311-cp311-linux_armv6l.whl#sha256=0901b6cf3efb240d5d32b1e88a8863f28e2986a2c0749886421c643b98a4aec2 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,405 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp311-cp311-linux_armv7l.whl#sha256=0901b6cf3efb240d5d32b1e88a8863f28e2986a2c0749886421c643b98a4aec2 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,406 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp39-cp39-linux_armv6l.whl#sha256=9defb70b5162efc2c0eb6e415a7e37c604aa9b248a006af86af8f59a3bce5d2b (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,406 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp39-cp39-linux_armv7l.whl#sha256=9defb70b5162efc2c0eb6e415a7e37c604aa9b248a006af86af8f59a3bce5d2b (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,407 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp37-cp37m-linux_armv6l.whl#sha256=ffef4ae0f634dd977cc2ec6798b9f36f73d788aca27bb7199f552d5513c34413 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,407 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp37-cp37m-linux_armv7l.whl#sha256=ffef4ae0f634dd977cc2ec6798b9f36f73d788aca27bb7199f552d5513c34413 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,408 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp311-cp311-linux_armv6l.whl#sha256=64b685362c3f9027bfeafdffb6a5d58c349a76fd551eeb7b98de146827463e75 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,408 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp311-cp311-linux_armv7l.whl#sha256=64b685362c3f9027bfeafdffb6a5d58c349a76fd551eeb7b98de146827463e75 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,409 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp39-cp39-linux_armv6l.whl#sha256=34527068d84569095aefee41a353c5dfc0dfa55b68097890da9a1eca2ee9b726 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,410 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp39-cp39-linux_armv7l.whl#sha256=34527068d84569095aefee41a353c5dfc0dfa55b68097890da9a1eca2ee9b726 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,410 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp311-cp311-linux_armv6l.whl#sha256=6b76f3b3f532934ad49a829e7bf8176af580f4687f1491c49c3f571bf081f961 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,411 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp311-cp311-linux_armv7l.whl#sha256=6b76f3b3f532934ad49a829e7bf8176af580f4687f1491c49c3f571bf081f961 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,411 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp37-cp37m-linux_armv6l.whl#sha256=d179f6c6c0ad4e0f06950e1609118b065b3476c47446325f6614bdbef5ede0d0 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,412 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp37-cp37m-linux_armv7l.whl#sha256=d179f6c6c0ad4e0f06950e1609118b065b3476c47446325f6614bdbef5ede0d0 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,412 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp39-cp39-linux_armv6l.whl#sha256=6df2298fa80eefa823153fa0b9db67e35da72da7f88c5949f4f637872ff22c3b (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,413 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp39-cp39-linux_armv7l.whl#sha256=6df2298fa80eefa823153fa0b9db67e35da72da7f88c5949f4f637872ff22c3b (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,413 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp311-cp311-linux_armv6l.whl#sha256=146b572fde14b0d0770e1c1cd90870ad6db4af293ade814fed7a49e3857f1444 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,414 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp311-cp311-linux_armv7l.whl#sha256=146b572fde14b0d0770e1c1cd90870ad6db4af293ade814fed7a49e3857f1444 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,414 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp37-cp37m-linux_armv6l.whl#sha256=8c0cc1974033765d6eeefdb635a506385b5f38e00361bd6de47ff1a83b07e12a (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,415 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp37-cp37m-linux_armv7l.whl#sha256=8c0cc1974033765d6eeefdb635a506385b5f38e00361bd6de47ff1a83b07e12a (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,415 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp39-cp39-linux_armv6l.whl#sha256=9f3fe3d3b4b4bde8b34a8f964ebde72f1efcc7833b9a0b34f6b9c8ff3ed595db (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,416 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp39-cp39-linux_armv7l.whl#sha256=9f3fe3d3b4b4bde8b34a8f964ebde72f1efcc7833b9a0b34f6b9c8ff3ed595db (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,416 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp311-cp311-linux_armv6l.whl#sha256=29b8e7f4a3e60084db855e6d587231253771ad57184a3265922d659512e136fb (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,417 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp311-cp311-linux_armv7l.whl#sha256=29b8e7f4a3e60084db855e6d587231253771ad57184a3265922d659512e136fb (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,417 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp37-cp37m-linux_armv6l.whl#sha256=34b00b40f17a95b2cc5cbabd880acc2c56996457b0acd265cace6966c10b9575 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,418 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp37-cp37m-linux_armv7l.whl#sha256=34b00b40f17a95b2cc5cbabd880acc2c56996457b0acd265cace6966c10b9575 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,418 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp39-cp39-linux_armv6l.whl#sha256=04471408d60c00f568404b1ab01ca89567b36a1aa50ef6041aceef07ed1e45f4 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,419 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp39-cp39-linux_armv7l.whl#sha256=04471408d60c00f568404b1ab01ca89567b36a1aa50ef6041aceef07ed1e45f4 (from https://www.piwheels.org/simple/kssdtree/) 2026-02-13T04:56:46,503 Given no hashes to check 1 links for project 'kssdtree': discarding no candidates 2026-02-13T04:56:46,576 Collecting kssdtree==2.0.9 2026-02-13T04:56:46,579 Created temporary directory: /tmp/pip-unpack-1eu9hw8h 2026-02-13T04:56:46,587 Starting new HTTPS connection (1): files.pythonhosted.org:443 2026-02-13T04:56:46,660 https://files.pythonhosted.org:443 "GET /packages/41/14/6350a913694cb9af7e5d542e566286c28d7a96c0b257bf7e19e8cc0400d0/kssdtree-2.0.9.tar.gz HTTP/1.1" 200 114720 2026-02-13T04:56:46,663 Downloading kssdtree-2.0.9.tar.gz (114 kB) 2026-02-13T04:56:47,109 Added kssdtree==2.0.9 from https://files.pythonhosted.org/packages/41/14/6350a913694cb9af7e5d542e566286c28d7a96c0b257bf7e19e8cc0400d0/kssdtree-2.0.9.tar.gz#sha256=a3b9195368afd35ab63a65da96f33c1ed038a5e5ffd2f572fcdfd61d4ae81802 to build tracker '/tmp/pip-req-tracker-2o4w2_o2' 2026-02-13T04:56:47,110 Running setup.py (path:/tmp/pip-wheel-b_ay5536/kssdtree_b4470a0c6f934bfaabdc627bfc71a1d3/setup.py) egg_info for package kssdtree 2026-02-13T04:56:47,112 Created temporary directory: /tmp/pip-pip-egg-info-ue88qy57 2026-02-13T04:56:47,112 Running command python setup.py egg_info 2026-02-13T04:56:49,333 running egg_info 2026-02-13T04:56:49,402 creating /tmp/pip-pip-egg-info-ue88qy57/kssdtree.egg-info 2026-02-13T04:56:49,404 writing /tmp/pip-pip-egg-info-ue88qy57/kssdtree.egg-info/PKG-INFO 2026-02-13T04:56:49,413 writing dependency_links to /tmp/pip-pip-egg-info-ue88qy57/kssdtree.egg-info/dependency_links.txt 2026-02-13T04:56:49,418 writing requirements to /tmp/pip-pip-egg-info-ue88qy57/kssdtree.egg-info/requires.txt 2026-02-13T04:56:49,420 writing top-level names to /tmp/pip-pip-egg-info-ue88qy57/kssdtree.egg-info/top_level.txt 2026-02-13T04:56:49,423 writing manifest file '/tmp/pip-pip-egg-info-ue88qy57/kssdtree.egg-info/SOURCES.txt' 2026-02-13T04:56:50,010 listing git files failed - pretending there aren't any 2026-02-13T04:56:50,039 reading manifest file '/tmp/pip-pip-egg-info-ue88qy57/kssdtree.egg-info/SOURCES.txt' 2026-02-13T04:56:50,044 reading manifest template 'MANIFEST.in' 2026-02-13T04:56:50,092 writing manifest file '/tmp/pip-pip-egg-info-ue88qy57/kssdtree.egg-info/SOURCES.txt' 2026-02-13T04:56:50,284 Source in /tmp/pip-wheel-b_ay5536/kssdtree_b4470a0c6f934bfaabdc627bfc71a1d3 has version 2.0.9, which satisfies requirement kssdtree==2.0.9 from https://files.pythonhosted.org/packages/41/14/6350a913694cb9af7e5d542e566286c28d7a96c0b257bf7e19e8cc0400d0/kssdtree-2.0.9.tar.gz#sha256=a3b9195368afd35ab63a65da96f33c1ed038a5e5ffd2f572fcdfd61d4ae81802 2026-02-13T04:56:50,286 Removed kssdtree==2.0.9 from https://files.pythonhosted.org/packages/41/14/6350a913694cb9af7e5d542e566286c28d7a96c0b257bf7e19e8cc0400d0/kssdtree-2.0.9.tar.gz#sha256=a3b9195368afd35ab63a65da96f33c1ed038a5e5ffd2f572fcdfd61d4ae81802 from build tracker '/tmp/pip-req-tracker-2o4w2_o2' 2026-02-13T04:56:50,295 Created temporary directory: /tmp/pip-unpack-2yswrjqw 2026-02-13T04:56:50,296 Building wheels for collected packages: kssdtree 2026-02-13T04:56:50,304 Created temporary directory: /tmp/pip-wheel-b3uqp7g9 2026-02-13T04:56:50,305 Building wheel for kssdtree (setup.py): started 2026-02-13T04:56:50,306 Destination directory: /tmp/pip-wheel-b3uqp7g9 2026-02-13T04:56:50,306 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-b_ay5536/kssdtree_b4470a0c6f934bfaabdc627bfc71a1d3/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-b_ay5536/kssdtree_b4470a0c6f934bfaabdc627bfc71a1d3/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-b3uqp7g9 2026-02-13T04:56:52,461 running bdist_wheel 2026-02-13T04:56:52,737 running build 2026-02-13T04:56:52,738 running build_py 2026-02-13T04:56:52,812 creating build/lib.linux-armv7l-cpython-39 2026-02-13T04:56:52,816 copying kssdtree.py -> build/lib.linux-armv7l-cpython-39 2026-02-13T04:56:52,823 copying toolutils.py -> build/lib.linux-armv7l-cpython-39 2026-02-13T04:56:52,827 running egg_info 2026-02-13T04:56:52,896 writing kssdtree.egg-info/PKG-INFO 2026-02-13T04:56:52,902 writing dependency_links to kssdtree.egg-info/dependency_links.txt 2026-02-13T04:56:52,907 writing requirements to kssdtree.egg-info/requires.txt 2026-02-13T04:56:52,909 writing top-level names to kssdtree.egg-info/top_level.txt 2026-02-13T04:56:53,144 listing git files failed - pretending there aren't any 2026-02-13T04:56:53,173 reading manifest file 'kssdtree.egg-info/SOURCES.txt' 2026-02-13T04:56:53,192 reading manifest template 'MANIFEST.in' 2026-02-13T04:56:53,238 writing manifest file 'kssdtree.egg-info/SOURCES.txt' 2026-02-13T04:56:53,244 running build_ext 2026-02-13T04:56:54,424 building 'kssd' extension 2026-02-13T04:56:54,428 creating build/temp.linux-armv7l-cpython-39 2026-02-13T04:56:54,432 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c co2mco.c -o build/temp.linux-armv7l-cpython-39/co2mco.o -fopenmp 2026-02-13T04:56:54,822 co2mco.c: In function ‘cdb_kmerf2kmerdb’: 2026-02-13T04:56:54,823 co2mco.c:109:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2026-02-13T04:56:54,824 109 | for (unsigned int i = 0; i < comp_num; i++) { 2026-02-13T04:56:54,824 | ^ 2026-02-13T04:56:54,830 co2mco.c: In function ‘co2unitllmco’: 2026-02-13T04:56:54,830 co2mco.c:191:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2026-02-13T04:56:54,831 191 | for (unsigned int i = 0; i < bin_sz; i++) { 2026-02-13T04:56:54,832 | ^ 2026-02-13T04:56:56,314 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c command_composite.c -o build/temp.linux-armv7l-cpython-39/command_composite.o -fopenmp 2026-02-13T04:56:57,039 command_composite.c: In function ‘get_species_abundance’: 2026-02-13T04:56:57,040 command_composite.c:32:34: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2026-02-13T04:56:57,041 32 | if (ref_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, ref_dstat_fpath); 2026-02-13T04:56:57,041 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:56:57,042 command_composite.c:34:34: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2026-02-13T04:56:57,042 34 | if (qry_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, qry_dstat_fpath); 2026-02-13T04:56:57,043 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:56:57,045 command_composite.c:64:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T04:56:57,046 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2026-02-13T04:56:57,047 | ^ 2026-02-13T04:56:57,047 command_composite.c:64:13: note: ‘sprintf’ output 4 or more bytes (assuming 259) into a destination of size 256 2026-02-13T04:56:57,048 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2026-02-13T04:56:57,048 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:56:57,049 command_composite.c:70:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T04:56:57,050 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2026-02-13T04:56:57,050 | ^ 2026-02-13T04:56:57,051 command_composite.c:70:13: note: ‘sprintf’ output 4 or more bytes (assuming 259) into a destination of size 256 2026-02-13T04:56:57,051 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2026-02-13T04:56:57,052 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:56:57,052 command_composite.c:76:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T04:56:57,053 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2026-02-13T04:56:57,053 | ^ 2026-02-13T04:56:57,054 command_composite.c:76:13: note: ‘sprintf’ output 4 or more bytes (assuming 259) into a destination of size 256 2026-02-13T04:56:57,054 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2026-02-13T04:56:57,055 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:56:57,055 command_composite.c:82:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T04:56:57,056 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2026-02-13T04:56:57,056 | ^ 2026-02-13T04:56:57,057 command_composite.c:82:13: note: ‘sprintf’ output 4 or more bytes (assuming 259) into a destination of size 256 2026-02-13T04:56:57,058 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2026-02-13T04:56:57,058 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:56:57,058 command_composite.c:88:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T04:56:57,059 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2026-02-13T04:56:57,059 | ^ 2026-02-13T04:56:57,060 command_composite.c:88:13: note: ‘sprintf’ output 6 or more bytes (assuming 261) into a destination of size 256 2026-02-13T04:56:57,060 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2026-02-13T04:56:57,061 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:56:57,630 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c command_dist.c -o build/temp.linux-armv7l-cpython-39/command_dist.o -fopenmp 2026-02-13T04:56:58,108 command_dist.c: In function ‘mco_cbd_co_dist’: 2026-02-13T04:56:58,111 command_dist.c:677:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-02-13T04:56:58,112 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2026-02-13T04:56:58,112 | ~~^ 2026-02-13T04:56:58,113 | | 2026-02-13T04:56:58,113 | long unsigned int 2026-02-13T04:56:58,114 | %u 2026-02-13T04:56:58,114 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2026-02-13T04:56:58,114 | ~~~~~~~ 2026-02-13T04:56:58,115 | | 2026-02-13T04:56:58,115 | size_t {aka unsigned int} 2026-02-13T04:56:58,118 command_dist.c:677:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-02-13T04:56:58,119 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2026-02-13T04:56:58,119 | ~~^ 2026-02-13T04:56:58,120 | | 2026-02-13T04:56:58,120 | long unsigned int 2026-02-13T04:56:58,120 | %u 2026-02-13T04:56:58,121 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2026-02-13T04:56:58,121 679 | maplength, (size_t) b * unitsz_distf_mapped); 2026-02-13T04:56:58,122 | ~~~~~~~~~ 2026-02-13T04:56:58,122 | | 2026-02-13T04:56:58,123 | size_t {aka unsigned int} 2026-02-13T04:56:58,123 command_dist.c:677:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2026-02-13T04:56:58,124 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2026-02-13T04:56:58,124 | ~~^ 2026-02-13T04:56:58,125 | | 2026-02-13T04:56:58,126 | long unsigned int 2026-02-13T04:56:58,126 | %u 2026-02-13T04:56:58,126 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2026-02-13T04:56:58,127 679 | maplength, (size_t) b * unitsz_distf_mapped); 2026-02-13T04:56:58,127 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:56:58,128 | | 2026-02-13T04:56:58,128 | unsigned int 2026-02-13T04:56:58,129 command_dist.c:715:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2026-02-13T04:56:58,129 715 | for (int n = 0; n < fco_pos[k + 1] - fco_pos[k]; n++) { 2026-02-13T04:56:58,130 | ^ 2026-02-13T04:56:58,142 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2026-02-13T04:56:58,145 command_dist.c:863:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-02-13T04:56:58,146 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2026-02-13T04:56:58,146 | ~~^ ~~~~~~~ 2026-02-13T04:56:58,147 | | | 2026-02-13T04:56:58,147 | long unsigned int size_t {aka unsigned int} 2026-02-13T04:56:58,147 | %u 2026-02-13T04:56:58,149 command_dist.c:863:93: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-02-13T04:56:58,149 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2026-02-13T04:56:58,150 | ~~^ 2026-02-13T04:56:58,150 | | 2026-02-13T04:56:58,151 | long unsigned int 2026-02-13T04:56:58,151 | %u 2026-02-13T04:56:58,151 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2026-02-13T04:56:58,152 | ~~~~~~~~~ 2026-02-13T04:56:58,152 | | 2026-02-13T04:56:58,153 | size_t {aka unsigned int} 2026-02-13T04:56:58,153 command_dist.c:863:98: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2026-02-13T04:56:58,154 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2026-02-13T04:56:58,154 | ~~^ 2026-02-13T04:56:58,154 | | 2026-02-13T04:56:58,155 | long unsigned int 2026-02-13T04:56:58,155 | %u 2026-02-13T04:56:58,156 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2026-02-13T04:56:58,156 865 | (size_t) b * unitsz_distf_mapped); 2026-02-13T04:56:58,157 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:56:58,157 | | 2026-02-13T04:56:58,158 | unsigned int 2026-02-13T04:56:58,158 command_dist.c:810:13: warning: unused variable ‘fco_pos’ [-Wunused-variable] 2026-02-13T04:56:58,158 810 | size_t *fco_pos = malloc(sizeof(size_t) * (co_dstat_readin.infile_num + 1)); 2026-02-13T04:56:58,159 | ^~~~~~~ 2026-02-13T04:56:58,159 command_dist.c:809:17: warning: unused variable ‘cbd_fcode_stat’ [-Wunused-variable] 2026-02-13T04:56:58,160 809 | struct stat cbd_fcode_stat; 2026-02-13T04:56:58,160 | ^~~~~~~~~~~~~~ 2026-02-13T04:56:58,161 command_dist.c:808:31: warning: unused variable ‘cbd_fcode_comp_index_fp’ [-Wunused-variable] 2026-02-13T04:56:58,161 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2026-02-13T04:56:58,161 | ^~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:56:58,162 command_dist.c:808:11: warning: unused variable ‘cbd_fcode_comp_fp’ [-Wunused-variable] 2026-02-13T04:56:58,162 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2026-02-13T04:56:58,163 | ^~~~~~~~~~~~~~~~~ 2026-02-13T04:56:58,175 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2026-02-13T04:56:58,178 command_dist.c:1018:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-02-13T04:56:58,179 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2026-02-13T04:56:58,179 | ~~^ 2026-02-13T04:56:58,180 | | 2026-02-13T04:56:58,180 | long unsigned int 2026-02-13T04:56:58,181 | %u 2026-02-13T04:56:58,181 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2026-02-13T04:56:58,181 | ~~~~~~~ 2026-02-13T04:56:58,182 | | 2026-02-13T04:56:58,182 | size_t {aka unsigned int} 2026-02-13T04:56:58,183 command_dist.c:1018:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-02-13T04:56:58,183 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2026-02-13T04:56:58,184 | ~~^ 2026-02-13T04:56:58,184 | | 2026-02-13T04:56:58,184 | long unsigned int 2026-02-13T04:56:58,185 | %u 2026-02-13T04:56:58,185 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2026-02-13T04:56:58,186 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2026-02-13T04:56:58,186 | ~~~~~~~~~ 2026-02-13T04:56:58,186 | | 2026-02-13T04:56:58,187 | size_t {aka unsigned int} 2026-02-13T04:56:58,187 command_dist.c:1018:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2026-02-13T04:56:58,188 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2026-02-13T04:56:58,188 | ~~^ 2026-02-13T04:56:58,189 | | 2026-02-13T04:56:58,189 | long unsigned int 2026-02-13T04:56:58,190 | %u 2026-02-13T04:56:58,190 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2026-02-13T04:56:58,190 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2026-02-13T04:56:58,191 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:56:58,191 | | 2026-02-13T04:56:58,192 | unsigned int 2026-02-13T04:56:58,192 command_dist.c:1034:27: warning: comparison of integer expressions of different signedness: ‘__off_t’ {aka ‘long int’} and ‘unsigned int’ [-Wsign-compare] 2026-02-13T04:56:58,193 1034 | if (s.st_size > sizeof(gidobj_t) * MCOMM_SZ) mco_mem = (gidobj_t *) realloc(mco_mem, s.st_size); 2026-02-13T04:56:58,193 | ^ 2026-02-13T04:56:58,199 command_dist.c: In function ‘mco_co_dist_core’: 2026-02-13T04:56:58,200 command_dist.c:1116:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘gidobj_t’ {aka ‘unsigned int’} [-Wsign-compare] 2026-02-13T04:56:58,201 1116 | for (int k = 1; k < unit_arrmco[ind][0] + 1; k++) { 2026-02-13T04:56:58,201 | ^ 2026-02-13T04:56:58,214 command_dist.c: In function ‘koc_dist_print_nobin’: 2026-02-13T04:56:58,216 command_dist.c:1239:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2026-02-13T04:56:58,216 1239 | for (int rid = 0; rid < ref_num; rid++) 2026-02-13T04:56:58,217 | ^ 2026-02-13T04:56:58,220 command_dist.c:1245:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2026-02-13T04:56:58,220 1245 | for (int rid = 0; rid < ref_num; rid++) { 2026-02-13T04:56:58,221 | ^ 2026-02-13T04:56:58,232 command_dist.c: In function ‘dist_print_nobin’: 2026-02-13T04:56:58,234 command_dist.c:1335:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2026-02-13T04:56:58,234 1335 | if ((N_max > NREF) || (N_max > ref_num)) { 2026-02-13T04:56:58,235 | ^ 2026-02-13T04:56:58,239 command_dist.c:1356:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2026-02-13T04:56:58,239 1356 | for (int rid = 0; rid < ref_num; rid++) { 2026-02-13T04:56:58,240 | ^ 2026-02-13T04:56:58,242 command_dist.c:1380:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2026-02-13T04:56:58,243 1380 | for (int rid = 0; rid < ref_num; rid++) 2026-02-13T04:56:58,243 | ^ 2026-02-13T04:56:58,245 command_dist.c:1382:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2026-02-13T04:56:58,245 1382 | for (int rid = 0; rid < ref_num; rid++) 2026-02-13T04:56:58,246 | ^ 2026-02-13T04:56:58,842 command_dist.c: In function ‘run_stageI._omp_fn.1’: 2026-02-13T04:56:58,843 command_dist.c:403:21: warning: ‘com_abund_fp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2026-02-13T04:56:58,843 403 | fwrite(tmp_mem, sizeof(unsigned short) * tmpkmerct, 1, com_abund_fp); 2026-02-13T04:56:58,844 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:56:58,844 command_dist.c:375:40: note: ‘com_abund_fp’ was declared here 2026-02-13T04:56:58,845 375 | FILE *com_cofp, *indexfp, *com_abund_fp; 2026-02-13T04:56:58,845 | ^~~~~~~~~~~~ 2026-02-13T04:57:00,600 command_dist.c: In function ‘get_dim_shuffle’: 2026-02-13T04:57:00,600 command_dist.c:267:36: warning: ‘%s’ directive writing up to 264 bytes into a region of size 256 [-Wformat-overflow=] 2026-02-13T04:57:00,601 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2026-02-13T04:57:00,601 | ^~ ~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:00,602 command_dist.c:267:9: note: ‘sprintf’ output between 6 and 270 bytes into a destination of size 256 2026-02-13T04:57:00,602 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2026-02-13T04:57:00,603 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:02,504 command_dist.c: In function ‘mco_cbd_co_dist’: 2026-02-13T04:57:02,505 command_dist.c:596:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T04:57:02,506 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2026-02-13T04:57:02,506 | ^~ ~~~~~~~~~ 2026-02-13T04:57:02,506 command_dist.c:596:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2026-02-13T04:57:02,507 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2026-02-13T04:57:02,507 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:02,508 command_dist.c:625:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-02-13T04:57:02,508 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2026-02-13T04:57:02,509 | ^~~~~~~~~~~~~~~ 2026-02-13T04:57:02,509 command_dist.c:625:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2026-02-13T04:57:02,510 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2026-02-13T04:57:02,510 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:02,511 command_dist.c:681:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-02-13T04:57:02,512 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2026-02-13T04:57:02,512 | ^~~~~~~~~~~ 2026-02-13T04:57:02,513 command_dist.c:681:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2026-02-13T04:57:02,513 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2026-02-13T04:57:02,514 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:02,514 command_dist.c:682:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-02-13T04:57:02,514 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2026-02-13T04:57:02,515 | ^~~~~ 2026-02-13T04:57:02,515 command_dist.c:682:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2026-02-13T04:57:02,516 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2026-02-13T04:57:02,516 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:03,013 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2026-02-13T04:57:03,015 command_dist.c:763:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T04:57:03,015 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2026-02-13T04:57:03,016 | ^~ ~~~~~~~~~ 2026-02-13T04:57:03,016 command_dist.c:763:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2026-02-13T04:57:03,017 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2026-02-13T04:57:03,017 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:03,018 command_dist.c:790:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-02-13T04:57:03,018 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2026-02-13T04:57:03,019 | ^~~~~~~~~~~~~~~ 2026-02-13T04:57:03,019 command_dist.c:790:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2026-02-13T04:57:03,020 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2026-02-13T04:57:03,020 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:03,021 command_dist.c:823:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-02-13T04:57:03,021 823 | sprintf(distf, "%s/distance.out", distout_dir); 2026-02-13T04:57:03,022 | ^~~~~~~~~~~~~ 2026-02-13T04:57:03,022 command_dist.c:823:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2026-02-13T04:57:03,023 823 | sprintf(distf, "%s/distance.out", distout_dir); 2026-02-13T04:57:03,023 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:03,025 command_dist.c:849:39: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T04:57:03,025 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2026-02-13T04:57:03,026 | ^ 2026-02-13T04:57:03,026 command_dist.c:849:33: note: directive argument in the range [0, 536870912] 2026-02-13T04:57:03,026 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2026-02-13T04:57:03,027 | ^~~~~~~~~~ 2026-02-13T04:57:03,027 command_dist.c:849:8: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2026-02-13T04:57:03,028 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2026-02-13T04:57:03,028 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:03,029 command_dist.c:851:34: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T04:57:03,030 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2026-02-13T04:57:03,030 | ^ 2026-02-13T04:57:03,030 command_dist.c:851:28: note: directive argument in the range [0, 536870912] 2026-02-13T04:57:03,031 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2026-02-13T04:57:03,031 | ^~~~~~~~~~ 2026-02-13T04:57:03,032 command_dist.c:851:9: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2026-02-13T04:57:03,032 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2026-02-13T04:57:03,033 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:03,602 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2026-02-13T04:57:03,604 command_dist.c:927:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T04:57:03,604 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2026-02-13T04:57:03,605 | ^~ ~~~~~~~~~ 2026-02-13T04:57:03,606 command_dist.c:927:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2026-02-13T04:57:03,606 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2026-02-13T04:57:03,606 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:03,608 command_dist.c:956:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-02-13T04:57:03,608 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2026-02-13T04:57:03,609 | ^~~~~~~~~~~~~~~ 2026-02-13T04:57:03,609 command_dist.c:956:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2026-02-13T04:57:03,610 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2026-02-13T04:57:03,610 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:03,611 command_dist.c:990:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-02-13T04:57:03,612 990 | sprintf(distf, "%s/distance.out", distout_dir); 2026-02-13T04:57:03,612 | ^~~~~~~~~~~~~ 2026-02-13T04:57:03,613 command_dist.c:990:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2026-02-13T04:57:03,614 990 | sprintf(distf, "%s/distance.out", distout_dir); 2026-02-13T04:57:03,614 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:03,616 command_dist.c:1022:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-02-13T04:57:03,617 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2026-02-13T04:57:03,617 | ^~~~~~~~~~~ 2026-02-13T04:57:03,618 command_dist.c:1022:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2026-02-13T04:57:03,618 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2026-02-13T04:57:03,619 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:03,620 command_dist.c:1023:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-02-13T04:57:03,620 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2026-02-13T04:57:03,621 | ^~~~~ 2026-02-13T04:57:03,621 command_dist.c:1023:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2026-02-13T04:57:03,622 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2026-02-13T04:57:03,622 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:04,215 command_dist.c: In function ‘combine_queries’: 2026-02-13T04:57:04,218 command_dist.c:1492:41: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-02-13T04:57:04,218 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2026-02-13T04:57:04,218 | ^ 2026-02-13T04:57:04,220 command_dist.c:1492:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-02-13T04:57:04,221 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2026-02-13T04:57:04,221 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:04,223 command_dist.c:1499:40: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-02-13T04:57:04,223 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2026-02-13T04:57:04,224 | ^ 2026-02-13T04:57:04,225 command_dist.c:1499:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-02-13T04:57:04,226 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2026-02-13T04:57:04,226 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:04,230 command_dist.c:1603:32: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T04:57:04,231 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2026-02-13T04:57:04,231 | ^~ ~~~~~~~~ 2026-02-13T04:57:04,233 command_dist.c:1603:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2026-02-13T04:57:04,234 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2026-02-13T04:57:04,234 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:05,400 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c command_dist_wrapper.c -o build/temp.linux-armv7l-cpython-39/command_dist_wrapper.o -fopenmp 2026-02-13T04:57:05,815 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c command_set.c -o build/temp.linux-armv7l-cpython-39/command_set.o -fopenmp 2026-02-13T04:57:06,179 command_set.c: In function ‘sketch_operate’: 2026-02-13T04:57:06,180 command_set.c:178:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2026-02-13T04:57:06,181 178 | for(int n = 0; n < fco_pos[i+1] - fco_pos[i]; n++){ 2026-02-13T04:57:06,181 | ^ 2026-02-13T04:57:06,204 command_set.c: In function ‘combin_subset_pans’: 2026-02-13T04:57:06,204 command_set.c:457:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2026-02-13T04:57:06,205 457 | free(co_dstat_fpath); 2026-02-13T04:57:06,205 | ^~~~~~~~~~~~~~ 2026-02-13T04:57:06,206 In file included from kssdheaders/global_basic.h:159, 2026-02-13T04:57:06,207 from command_set.c:15: 2026-02-13T04:57:06,207 /usr/include/stdlib.h:565:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2026-02-13T04:57:06,208 565 | extern void free (void *__ptr) __THROW; 2026-02-13T04:57:06,208 | ~~~~~~^~~~~ 2026-02-13T04:57:06,216 command_set.c: In function ‘grouping_genomes’: 2026-02-13T04:57:06,217 command_set.c:562:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2026-02-13T04:57:06,217 562 | free(co_dstat_fpath); 2026-02-13T04:57:06,218 | ^~~~~~~~~~~~~~ 2026-02-13T04:57:06,218 In file included from kssdheaders/global_basic.h:159, 2026-02-13T04:57:06,219 from command_set.c:15: 2026-02-13T04:57:06,219 /usr/include/stdlib.h:565:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2026-02-13T04:57:06,220 565 | extern void free (void *__ptr) __THROW; 2026-02-13T04:57:06,220 | ~~~~~~^~~~~ 2026-02-13T04:57:06,494 command_set.c: In function ‘sketch_union’: 2026-02-13T04:57:06,495 command_set.c:71:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-02-13T04:57:06,495 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2026-02-13T04:57:06,496 | ^ 2026-02-13T04:57:06,496 command_set.c:71:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-02-13T04:57:06,497 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2026-02-13T04:57:06,497 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:06,498 command_set.c:82:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T04:57:06,498 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2026-02-13T04:57:06,499 | ^~ ~~~~~~~~~~~ 2026-02-13T04:57:06,499 command_set.c:82:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-02-13T04:57:06,500 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2026-02-13T04:57:06,500 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:06,501 command_set.c:92:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T04:57:06,501 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2026-02-13T04:57:06,502 | ^~ ~~~~~~~~~~ 2026-02-13T04:57:06,502 command_set.c:92:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2026-02-13T04:57:06,503 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2026-02-13T04:57:06,503 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:06,770 command_set.c: In function ‘sketch_operate’: 2026-02-13T04:57:06,770 command_set.c:153:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T04:57:06,771 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2026-02-13T04:57:06,771 | ^~ ~~~~~~~~~~ 2026-02-13T04:57:06,772 command_set.c:153:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2026-02-13T04:57:06,772 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2026-02-13T04:57:06,773 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:06,773 command_set.c:155:33: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T04:57:06,774 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2026-02-13T04:57:06,774 | ^~ ~~~~~~~~~~~~~~~ 2026-02-13T04:57:06,774 command_set.c:155:13: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2026-02-13T04:57:06,775 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2026-02-13T04:57:06,775 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:06,776 command_set.c:165:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T04:57:06,776 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2026-02-13T04:57:06,777 | ^~ ~~~~~~~~~~~ 2026-02-13T04:57:06,777 command_set.c:165:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2026-02-13T04:57:06,778 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2026-02-13T04:57:06,778 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:06,779 command_set.c:169:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T04:57:06,779 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2026-02-13T04:57:06,780 | ^~ ~~~~~~~~~~~ 2026-02-13T04:57:06,780 command_set.c:169:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-02-13T04:57:06,781 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2026-02-13T04:57:06,781 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:06,782 command_set.c:174:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T04:57:06,782 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2026-02-13T04:57:06,782 | ^~ ~~~~~~~~~~~ 2026-02-13T04:57:06,783 command_set.c:174:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-02-13T04:57:06,783 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2026-02-13T04:57:06,784 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:06,784 command_set.c:187:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T04:57:06,785 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2026-02-13T04:57:06,785 | ^~ ~~~~~~~~~~~ 2026-02-13T04:57:06,786 command_set.c:187:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2026-02-13T04:57:06,786 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2026-02-13T04:57:06,787 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:06,787 command_set.c:192:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-02-13T04:57:06,788 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-02-13T04:57:06,788 | ^ 2026-02-13T04:57:06,789 command_set.c:192:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-02-13T04:57:06,789 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-02-13T04:57:06,790 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:07,141 command_set.c: In function ‘uniq_sketch_union’: 2026-02-13T04:57:07,142 command_set.c:234:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-02-13T04:57:07,143 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2026-02-13T04:57:07,143 | ^ 2026-02-13T04:57:07,143 command_set.c:234:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-02-13T04:57:07,144 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2026-02-13T04:57:07,144 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:07,145 command_set.c:247:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T04:57:07,145 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2026-02-13T04:57:07,146 | ^~ ~~~~~~~~~~~ 2026-02-13T04:57:07,146 command_set.c:247:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-02-13T04:57:07,147 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2026-02-13T04:57:07,147 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:07,148 command_set.c:259:29: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T04:57:07,148 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2026-02-13T04:57:07,149 | ^~ ~~~~~~~~~~~~~~~ 2026-02-13T04:57:07,149 command_set.c:259:9: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2026-02-13T04:57:07,150 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2026-02-13T04:57:07,150 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:07,448 command_set.c: In function ‘combin_pans’: 2026-02-13T04:57:07,448 command_set.c:297:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T04:57:07,449 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-02-13T04:57:07,449 | ^~ ~~~~~~~~~~~ 2026-02-13T04:57:07,450 command_set.c:297:25: note: directive argument in the range [0, 1073741823] 2026-02-13T04:57:07,450 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-02-13T04:57:07,451 | ^~~~~~~~~~ 2026-02-13T04:57:07,451 command_set.c:297:9: note: ‘sprintf’ output between 10 and 274 bytes into a destination of size 256 2026-02-13T04:57:07,451 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-02-13T04:57:07,452 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:07,452 command_set.c:300:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T04:57:07,453 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-02-13T04:57:07,453 | ^~ ~~~~~~~~~~ 2026-02-13T04:57:07,454 command_set.c:300:25: note: directive argument in the range [0, 1073741823] 2026-02-13T04:57:07,454 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-02-13T04:57:07,455 | ^~~~~~~~~~ 2026-02-13T04:57:07,455 command_set.c:300:9: note: ‘sprintf’ output between 16 and 280 bytes into a destination of size 256 2026-02-13T04:57:07,456 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-02-13T04:57:07,456 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:07,457 command_set.c:342:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-02-13T04:57:07,457 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-02-13T04:57:07,458 | ^ 2026-02-13T04:57:07,458 command_set.c:342:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-02-13T04:57:07,459 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-02-13T04:57:07,459 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:07,898 command_set.c: In function ‘combin_subset_pans’: 2026-02-13T04:57:07,899 command_set.c:469:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T04:57:07,899 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2026-02-13T04:57:07,899 | ^~ ~~~~~~~~~~~ 2026-02-13T04:57:07,900 command_set.c:469:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-02-13T04:57:07,900 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2026-02-13T04:57:07,901 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:07,901 command_set.c:475:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T04:57:07,902 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2026-02-13T04:57:07,902 | ^~ ~~~~~~~~~~ 2026-02-13T04:57:07,903 command_set.c:475:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2026-02-13T04:57:07,903 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2026-02-13T04:57:07,903 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:07,904 command_set.c:481:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T04:57:07,904 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-02-13T04:57:07,905 | ^~ ~~~~~~~~~~~ 2026-02-13T04:57:07,905 command_set.c:481:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-02-13T04:57:07,906 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-02-13T04:57:07,906 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:07,907 command_set.c:512:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T04:57:07,908 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-02-13T04:57:07,908 | ^~ ~~~~~~~~~~ 2026-02-13T04:57:07,909 command_set.c:512:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2026-02-13T04:57:07,909 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-02-13T04:57:07,910 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:07,910 command_set.c:523:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-02-13T04:57:07,910 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-02-13T04:57:07,911 | ^ 2026-02-13T04:57:07,911 command_set.c:523:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-02-13T04:57:07,912 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-02-13T04:57:07,912 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:08,398 command_set.c: In function ‘grouping_genomes’: 2026-02-13T04:57:08,399 command_set.c:574:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T04:57:08,399 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2026-02-13T04:57:08,400 | ^~ ~~~~~~~~~~~ 2026-02-13T04:57:08,400 command_set.c:574:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-02-13T04:57:08,401 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2026-02-13T04:57:08,401 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:08,402 command_set.c:580:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T04:57:08,402 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2026-02-13T04:57:08,402 | ^~ ~~~~~~~~~~ 2026-02-13T04:57:08,403 command_set.c:580:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2026-02-13T04:57:08,403 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2026-02-13T04:57:08,404 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:08,407 command_set.c:612:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T04:57:08,407 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-02-13T04:57:08,408 | ^~ ~~~~~~~~~~~ 2026-02-13T04:57:08,408 command_set.c:612:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-02-13T04:57:08,409 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-02-13T04:57:08,409 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:08,410 command_set.c:634:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-02-13T04:57:08,411 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-02-13T04:57:08,411 | ^~ ~~~~~~~~~~ 2026-02-13T04:57:08,412 command_set.c:634:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2026-02-13T04:57:08,412 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-02-13T04:57:08,412 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:08,413 command_set.c:645:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-02-13T04:57:08,413 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-02-13T04:57:08,414 | ^ 2026-02-13T04:57:08,414 command_set.c:645:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-02-13T04:57:08,415 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-02-13T04:57:08,415 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:09,079 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c command_shuffle.c -o build/temp.linux-armv7l-cpython-39/command_shuffle.o -fopenmp 2026-02-13T04:57:09,763 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c global_basic.c -o build/temp.linux-armv7l-cpython-39/global_basic.o -fopenmp 2026-02-13T04:57:10,120 global_basic.c: In function ‘organize_infile_list’: 2026-02-13T04:57:10,121 global_basic.c:195:20: warning: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 2026-02-13T04:57:10,121 195 | while (isspace(*buf)) buf++; 2026-02-13T04:57:10,122 | ^~~~~~~ 2026-02-13T04:57:10,124 global_basic.c:201:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-02-13T04:57:10,124 201 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2026-02-13T04:57:10,125 | ~~^ 2026-02-13T04:57:10,126 | | 2026-02-13T04:57:10,126 | long unsigned int 2026-02-13T04:57:10,127 | %u 2026-02-13T04:57:10,127 202 | list_path, file_num, buf, strlen(buf), PATHLEN); 2026-02-13T04:57:10,128 | ~~~~~~~~~~~ 2026-02-13T04:57:10,128 | | 2026-02-13T04:57:10,129 | size_t {aka unsigned int} 2026-02-13T04:57:10,129 global_basic.c:233:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-02-13T04:57:10,130 233 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2026-02-13T04:57:10,130 | ~~^ 2026-02-13T04:57:10,131 | | 2026-02-13T04:57:10,131 | long unsigned int 2026-02-13T04:57:10,132 | %u 2026-02-13T04:57:10,132 234 | list_path, file_num, buf, strlen(buf), PATHLEN); 2026-02-13T04:57:10,133 | ~~~~~~~~~~~ 2026-02-13T04:57:10,133 | | 2026-02-13T04:57:10,134 | size_t {aka unsigned int} 2026-02-13T04:57:11,744 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c iseq2comem.c -o build/temp.linux-armv7l-cpython-39/iseq2comem.o -fopenmp 2026-02-13T04:57:12,121 iseq2comem.c: In function ‘reads2mco’: 2026-02-13T04:57:12,122 iseq2comem.c:156:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2026-02-13T04:57:12,123 156 | if (base > TL) { 2026-02-13T04:57:12,123 | ^ 2026-02-13T04:57:12,124 iseq2comem.c:160:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2026-02-13T04:57:12,124 160 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2026-02-13T04:57:12,125 | ^~ 2026-02-13T04:57:12,125 iseq2comem.c:160:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2026-02-13T04:57:12,126 160 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2026-02-13T04:57:12,126 | ^ 2026-02-13T04:57:12,127 iseq2comem.c: In function ‘fasta2co’: 2026-02-13T04:57:12,128 iseq2comem.c:213:69: warning: too many arguments for format [-Wformat-extra-args] 2026-02-13T04:57:12,128 213 | if ((infp = popen(fas_fname, "r")) == NULL) fprintf(stderr, "fasta2co():%s", fas_fname, "\n"); 2026-02-13T04:57:12,129 | ^~~~~~~~~~~~~~~ 2026-02-13T04:57:12,129 iseq2comem.c:219:69: warning: too many arguments for format [-Wformat-extra-args] 2026-02-13T04:57:12,129 219 | if ((infp = popen(fas_fname, "r")) == NULL) fprintf(stderr, "fasta2co():%s", fas_fname, "\n"); 2026-02-13T04:57:12,130 | ^~~~~~~~~~~~~~~ 2026-02-13T04:57:12,130 iseq2comem.c:261:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2026-02-13T04:57:12,131 261 | if (base > TL) { 2026-02-13T04:57:12,131 | ^ 2026-02-13T04:57:12,132 iseq2comem.c:265:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2026-02-13T04:57:12,133 265 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2026-02-13T04:57:12,133 | ^~ 2026-02-13T04:57:12,133 iseq2comem.c:265:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2026-02-13T04:57:12,134 265 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2026-02-13T04:57:12,134 | ^ 2026-02-13T04:57:12,135 iseq2comem.c: In function ‘fastq2co’: 2026-02-13T04:57:12,136 iseq2comem.c:295:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare] 2026-02-13T04:57:12,136 295 | if (M >= CT_MAX) fprintf(stderr, "fastq2co(): Occurence num should smaller than %d", (int) CT_MAX); 2026-02-13T04:57:12,137 | ^~ 2026-02-13T04:57:12,137 iseq2comem.c:307:68: warning: too many arguments for format [-Wformat-extra-args] 2026-02-13T04:57:12,138 307 | if ((infp = popen(fq_fname, "r")) == NULL) fprintf(stderr, "fastq2co():%s", fq_fname, "\n"); 2026-02-13T04:57:12,138 | ^~~~~~~~~~~~~~~ 2026-02-13T04:57:12,139 iseq2comem.c:313:68: warning: too many arguments for format [-Wformat-extra-args] 2026-02-13T04:57:12,139 313 | if ((infp = popen(fq_fname, "r")) == NULL) fprintf(stderr, "fastq2co():%s", fq_fname, "\n"); 2026-02-13T04:57:12,139 | ^~~~~~~~~~~~~~~ 2026-02-13T04:57:12,140 iseq2comem.c:352:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2026-02-13T04:57:12,140 352 | if (base > TL) { 2026-02-13T04:57:12,141 | ^ 2026-02-13T04:57:12,141 iseq2comem.c:356:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2026-02-13T04:57:12,142 356 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2026-02-13T04:57:12,142 | ^~ 2026-02-13T04:57:12,143 iseq2comem.c:356:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2026-02-13T04:57:12,143 356 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2026-02-13T04:57:12,144 | ^ 2026-02-13T04:57:12,144 iseq2comem.c:375:44: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare] 2026-02-13T04:57:12,145 375 | if (!((co[n] & CT_MAX) < M)) co[n] |= CT_MAX; 2026-02-13T04:57:12,145 | ^ 2026-02-13T04:57:12,146 iseq2comem.c: In function ‘fastq2koc’: 2026-02-13T04:57:12,146 iseq2comem.c:403:68: warning: too many arguments for format [-Wformat-extra-args] 2026-02-13T04:57:12,147 403 | if ((infp = popen(fq_fname, "r")) == NULL) fprintf(stderr, "fastq2koc():%s", fq_fname, "\n"); 2026-02-13T04:57:12,147 | ^~~~~~~~~~~~~~~~ 2026-02-13T04:57:12,148 iseq2comem.c:409:68: warning: too many arguments for format [-Wformat-extra-args] 2026-02-13T04:57:12,148 409 | if ((infp = popen(fq_fname, "r")) == NULL) fprintf(stderr, "fastq2koc():%s", fq_fname, "\n"); 2026-02-13T04:57:12,149 | ^~~~~~~~~~~~~~~~ 2026-02-13T04:57:12,149 iseq2comem.c:448:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2026-02-13T04:57:12,150 448 | if (base > TL) { 2026-02-13T04:57:12,150 | ^ 2026-02-13T04:57:12,151 iseq2comem.c:452:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2026-02-13T04:57:12,151 452 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2026-02-13T04:57:12,152 | ^~ 2026-02-13T04:57:12,152 iseq2comem.c:452:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2026-02-13T04:57:12,153 452 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2026-02-13T04:57:12,153 | ^ 2026-02-13T04:57:12,161 iseq2comem.c: In function ‘mt_shortreads2koc’: 2026-02-13T04:57:12,161 iseq2comem.c:628:34: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2026-02-13T04:57:12,162 628 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2026-02-13T04:57:12,162 | ^~ 2026-02-13T04:57:12,163 iseq2comem.c:628:58: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2026-02-13T04:57:12,163 628 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2026-02-13T04:57:12,164 | ^ 2026-02-13T04:57:15,074 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c mman.c -o build/temp.linux-armv7l-cpython-39/mman.o -fopenmp 2026-02-13T04:57:15,229 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c mytime.c -o build/temp.linux-armv7l-cpython-39/mytime.o -fopenmp 2026-02-13T04:57:15,522 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c pykssd.c -o build/temp.linux-armv7l-cpython-39/pykssd.o -fopenmp 2026-02-13T04:57:16,301 pykssd.c: In function ‘py_dist_dispatch’: 2026-02-13T04:57:16,302 pykssd.c:334:13: warning: unused variable ‘state1’ [-Wunused-variable] 2026-02-13T04:57:16,303 334 | int state1 = dist_dispatch(&dist_opt_val1); 2026-02-13T04:57:16,303 | ^~~~~~ 2026-02-13T04:57:16,304 pykssd.c:396:13: warning: unused variable ‘state2’ [-Wunused-variable] 2026-02-13T04:57:16,304 396 | int state2 = dist_dispatch(&dist_opt_val2); 2026-02-13T04:57:16,305 | ^~~~~~ 2026-02-13T04:57:16,308 pykssd.c:530:13: warning: unused variable ‘state4’ [-Wunused-variable] 2026-02-13T04:57:16,309 530 | int state4 = dist_dispatch(&dist_opt_val4); 2026-02-13T04:57:16,309 | ^~~~~~ 2026-02-13T04:57:16,650 pykssd.c: In function ‘rename_file’: 2026-02-13T04:57:16,651 pykssd.c:44:15: warning: ‘strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 2026-02-13T04:57:16,651 44 | newfile = strncpy(newfile, p1, len - suffix_len); 2026-02-13T04:57:16,652 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-02-13T04:57:16,652 pykssd.c:41:15: note: length computed here 2026-02-13T04:57:16,653 41 | int len = strlen(p1); 2026-02-13T04:57:16,653 | ^~~~~~~~~~ 2026-02-13T04:57:17,699 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/co2mco.o build/temp.linux-armv7l-cpython-39/command_composite.o build/temp.linux-armv7l-cpython-39/command_dist.o build/temp.linux-armv7l-cpython-39/command_dist_wrapper.o build/temp.linux-armv7l-cpython-39/command_set.o build/temp.linux-armv7l-cpython-39/command_shuffle.o build/temp.linux-armv7l-cpython-39/global_basic.o build/temp.linux-armv7l-cpython-39/iseq2comem.o build/temp.linux-armv7l-cpython-39/mman.o build/temp.linux-armv7l-cpython-39/mytime.o build/temp.linux-armv7l-cpython-39/pykssd.o -L/usr/lib -lz -o build/lib.linux-armv7l-cpython-39/kssd.cpython-39-arm-linux-gnueabihf.so -fopenmp 2026-02-13T04:57:18,058 building 'nj' extension 2026-02-13T04:57:18,063 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.9 -c align.c -o build/temp.linux-armv7l-cpython-39/align.o 2026-02-13T04:57:19,050 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.9 -c buildtree.c -o build/temp.linux-armv7l-cpython-39/buildtree.o 2026-02-13T04:57:19,363 buildtree.c: In function ‘UPGMA_buildtree’: 2026-02-13T04:57:19,363 buildtree.c:716:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2026-02-13T04:57:19,364 716 | if (min_of_row_idx[m] == minj || min_of_row_idx[m] == mini) { 2026-02-13T04:57:19,364 | ^~ 2026-02-13T04:57:19,365 buildtree.c:716:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2026-02-13T04:57:19,365 716 | if (min_of_row_idx[m] == minj || min_of_row_idx[m] == mini) { 2026-02-13T04:57:19,366 | ^~ 2026-02-13T04:57:20,730 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.9 -c cluster.c -o build/temp.linux-armv7l-cpython-39/cluster.o 2026-02-13T04:57:21,516 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.9 -c distancemat.c -o build/temp.linux-armv7l-cpython-39/distancemat.o 2026-02-13T04:57:21,806 distancemat.c: In function ‘clone_DistanceMatrix’: 2026-02-13T04:57:21,807 distancemat.c:226:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2026-02-13T04:57:21,807 226 | for( i=0; i < dest->size; i++) { 2026-02-13T04:57:21,808 | ^ 2026-02-13T04:57:21,808 distancemat.c: In function ‘empty_DistanceMatrix’: 2026-02-13T04:57:21,809 distancemat.c:260:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2026-02-13T04:57:21,810 260 | for( i=0; i < mat->size; i++) { 2026-02-13T04:57:21,810 | ^ 2026-02-13T04:57:21,811 distancemat.c: In function ‘print_DistanceMatrix’: 2026-02-13T04:57:21,811 distancemat.c:349:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2026-02-13T04:57:21,812 349 | for(row=0; row < mat->size; row++) { 2026-02-13T04:57:21,812 | ^ 2026-02-13T04:57:21,813 distancemat.c: In function ‘read_phylip_DistanceMatrix’: 2026-02-13T04:57:21,813 distancemat.c:410:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 2026-02-13T04:57:21,814 410 | while(c = fgetc(handle)) { 2026-02-13T04:57:21,814 | ^ 2026-02-13T04:57:22,631 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.9 -c pynj.c -o build/temp.linux-armv7l-cpython-39/pynj.o 2026-02-13T04:57:23,529 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.9 -c sequence.c -o build/temp.linux-armv7l-cpython-39/sequence.o 2026-02-13T04:57:24,008 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.9 -c tree.c -o build/temp.linux-armv7l-cpython-39/tree.o 2026-02-13T04:57:25,681 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.9 -c util.c -o build/temp.linux-armv7l-cpython-39/util.o 2026-02-13T04:57:26,092 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/align.o build/temp.linux-armv7l-cpython-39/buildtree.o build/temp.linux-armv7l-cpython-39/cluster.o build/temp.linux-armv7l-cpython-39/distancemat.o build/temp.linux-armv7l-cpython-39/pynj.o build/temp.linux-armv7l-cpython-39/sequence.o build/temp.linux-armv7l-cpython-39/tree.o build/temp.linux-armv7l-cpython-39/util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/nj.cpython-39-arm-linux-gnueabihf.so 2026-02-13T04:57:26,360 building 'dnj' extension 2026-02-13T04:57:26,368 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c bytescale.c -o build/temp.linux-armv7l-cpython-39/bytescale.o -fopenmp 2026-02-13T04:57:26,526 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c dnj.c -o build/temp.linux-armv7l-cpython-39/dnj.o -fopenmp 2026-02-13T04:57:26,821 dnj.c: In function ‘minQpair’: 2026-02-13T04:57:26,822 dnj.c:70:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2026-02-13T04:57:26,822 70 | pos <<= sizeof(unsigned) * 8; 2026-02-13T04:57:26,823 | ^~~ 2026-02-13T04:57:26,824 dnj.c:126:21: warning: left shift count >= width of type [-Wshift-count-overflow] 2026-02-13T04:57:26,824 126 | pos <<= sizeof(unsigned) * 8; 2026-02-13T04:57:26,825 | ^~~ 2026-02-13T04:57:26,826 dnj.c: In function ‘maxQpair’: 2026-02-13T04:57:26,826 dnj.c:157:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2026-02-13T04:57:26,826 157 | pos <<= sizeof(unsigned) * 8; 2026-02-13T04:57:26,827 | ^~~ 2026-02-13T04:57:26,828 dnj.c:213:21: warning: left shift count >= width of type [-Wshift-count-overflow] 2026-02-13T04:57:26,828 213 | pos <<= sizeof(unsigned) * 8; 2026-02-13T04:57:26,829 | ^~~ 2026-02-13T04:57:26,829 dnj.c: In function ‘UPGMApair’: 2026-02-13T04:57:26,829 dnj.c:237:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2026-02-13T04:57:26,830 237 | pos <<= sizeof(unsigned) * 8; 2026-02-13T04:57:26,830 | ^~~ 2026-02-13T04:57:26,831 dnj.c:284:25: warning: left shift count >= width of type [-Wshift-count-overflow] 2026-02-13T04:57:26,831 284 | pos <<= sizeof(unsigned) * 8; 2026-02-13T04:57:26,832 | ^~~ 2026-02-13T04:57:26,832 dnj.c:291:21: warning: left shift count >= width of type [-Wshift-count-overflow] 2026-02-13T04:57:26,833 291 | pos <<= sizeof(unsigned) * 8; 2026-02-13T04:57:26,833 | ^~~ 2026-02-13T04:57:26,834 dnj.c: In function ‘minQrow’: 2026-02-13T04:57:26,834 dnj.c:374:17: warning: left shift count >= width of type [-Wshift-count-overflow] 2026-02-13T04:57:26,835 374 | pos <<= sizeof(unsigned) * 8; 2026-02-13T04:57:26,835 | ^~~ 2026-02-13T04:57:26,837 dnj.c: In function ‘maxQrow’: 2026-02-13T04:57:26,837 dnj.c:435:17: warning: left shift count >= width of type [-Wshift-count-overflow] 2026-02-13T04:57:26,838 435 | pos <<= sizeof(unsigned) * 8; 2026-02-13T04:57:26,838 | ^~~ 2026-02-13T04:57:26,839 dnj.c: In function ‘UPGMArow’: 2026-02-13T04:57:26,840 dnj.c:488:21: warning: left shift count >= width of type [-Wshift-count-overflow] 2026-02-13T04:57:26,840 488 | pos <<= sizeof(unsigned) * 8; 2026-02-13T04:57:26,841 | ^~~ 2026-02-13T04:57:26,841 dnj.c:494:17: warning: left shift count >= width of type [-Wshift-count-overflow] 2026-02-13T04:57:26,842 494 | pos <<= sizeof(unsigned) * 8; 2026-02-13T04:57:26,842 | ^~~ 2026-02-13T04:57:26,843 dnj.c: In function ‘minQ_thread’: 2026-02-13T04:57:26,844 dnj.c:553:17: warning: left shift count >= width of type [-Wshift-count-overflow] 2026-02-13T04:57:26,845 553 | pos <<= sizeof(unsigned) * 8; 2026-02-13T04:57:26,845 | ^~~ 2026-02-13T04:57:29,660 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c filebuff.c -o build/temp.linux-armv7l-cpython-39/filebuff.o -fopenmp 2026-02-13T04:57:29,920 filebuff.c: In function ‘BuffgzFileBuff’: 2026-02-13T04:57:29,921 filebuff.c:99:47: warning: comparison of integer expressions of different signedness: ‘uInt’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2026-02-13T04:57:29,922 99 | if(status == Z_STREAM_END && strm->avail_out == dest->buffSize) { 2026-02-13T04:57:29,922 | ^~ 2026-02-13T04:57:30,597 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c hclust.c -o build/temp.linux-armv7l-cpython-39/hclust.o -fopenmp 2026-02-13T04:57:30,887 hclust.c: In function ‘minQ’: 2026-02-13T04:57:30,887 hclust.c:364:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2026-02-13T04:57:30,888 364 | while(++i < Q->n) { 2026-02-13T04:57:30,888 | ^ 2026-02-13T04:57:30,889 hclust.c:377:6: warning: left shift count >= width of type [-Wshift-count-overflow] 2026-02-13T04:57:30,889 377 | pos <<= sizeof(unsigned) * 8; 2026-02-13T04:57:30,890 | ^~~ 2026-02-13T04:57:30,890 hclust.c: In function ‘maxQ’: 2026-02-13T04:57:30,891 hclust.c:394:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2026-02-13T04:57:30,891 394 | while(++i < Q->n) { 2026-02-13T04:57:30,892 | ^ 2026-02-13T04:57:30,892 hclust.c:407:6: warning: left shift count >= width of type [-Wshift-count-overflow] 2026-02-13T04:57:30,893 407 | pos <<= sizeof(unsigned) * 8; 2026-02-13T04:57:30,893 | ^~~ 2026-02-13T04:57:35,817 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c matrix.c -o build/temp.linux-armv7l-cpython-39/matrix.o -fopenmp 2026-02-13T04:57:36,107 matrix.c: In function ‘ltdMatrix_popArrange’: 2026-02-13T04:57:36,109 matrix.c:538:9: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2026-02-13T04:57:36,109 538 | if(pos != n) { 2026-02-13T04:57:36,110 | ^~ 2026-02-13T04:57:38,135 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c mman.c -o build/temp.linux-armv7l-cpython-39/mman.o -fopenmp 2026-02-13T04:57:38,295 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c nj.c -o build/temp.linux-armv7l-cpython-39/nj.o -fopenmp 2026-02-13T04:57:38,577 nj.c: In function ‘initQ’: 2026-02-13T04:57:38,578 nj.c:243:6: warning: left shift count >= width of type [-Wshift-count-overflow] 2026-02-13T04:57:38,578 243 | pos <<= sizeof(unsigned) * 8; 2026-02-13T04:57:38,578 | ^~~ 2026-02-13T04:57:38,583 nj.c: In function ‘initQ_MN’: 2026-02-13T04:57:38,584 nj.c:358:6: warning: left shift count >= width of type [-Wshift-count-overflow] 2026-02-13T04:57:38,585 358 | pos <<= sizeof(unsigned) * 8; 2026-02-13T04:57:38,585 | ^~~ 2026-02-13T04:57:38,594 nj.c: In function ‘minD’: 2026-02-13T04:57:38,595 nj.c:559:6: warning: left shift count >= width of type [-Wshift-count-overflow] 2026-02-13T04:57:38,595 559 | pos <<= sizeof(unsigned) * 8; 2026-02-13T04:57:38,596 | ^~~ 2026-02-13T04:57:38,600 nj.c: In function ‘maxD’: 2026-02-13T04:57:38,601 nj.c:642:6: warning: left shift count >= width of type [-Wshift-count-overflow] 2026-02-13T04:57:38,602 642 | pos <<= sizeof(unsigned) * 8; 2026-02-13T04:57:38,602 | ^~~ 2026-02-13T04:57:38,611 nj.c: In function ‘minPair’: 2026-02-13T04:57:38,612 nj.c:826:6: warning: left shift count >= width of type [-Wshift-count-overflow] 2026-02-13T04:57:38,613 826 | pos <<= sizeof(unsigned) * 8; 2026-02-13T04:57:38,613 | ^~~ 2026-02-13T04:57:43,505 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c nwck.c -o build/temp.linux-armv7l-cpython-39/nwck.o -fopenmp 2026-02-13T04:57:44,645 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c pherror.c -o build/temp.linux-armv7l-cpython-39/pherror.o -fopenmp 2026-02-13T04:57:44,851 pherror.c: In function ‘cfread’: 2026-02-13T04:57:44,852 pherror.c:58:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2026-02-13T04:57:44,853 58 | } else if(nmemb == 0 || (nmemb == -1 && (errno & EAGAIN))) { 2026-02-13T04:57:44,854 | ^~ 2026-02-13T04:57:45,071 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c phy.c -o build/temp.linux-armv7l-cpython-39/phy.o -fopenmp 2026-02-13T04:57:47,331 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c pydnj.c -o build/temp.linux-armv7l-cpython-39/pydnj.o -fopenmp 2026-02-13T04:57:48,056 In file included from pydnj.c:11: 2026-02-13T04:57:48,057 dnjheaders/pherror.h:20: warning: "_XOPEN_SOURCE" redefined 2026-02-13T04:57:48,057 20 | #define _XOPEN_SOURCE 600 2026-02-13T04:57:48,058 | 2026-02-13T04:57:48,059 In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33, 2026-02-13T04:57:48,059 from /usr/include/limits.h:26, 2026-02-13T04:57:48,060 from /usr/lib/gcc/arm-linux-gnueabihf/10/include/limits.h:195, 2026-02-13T04:57:48,060 from /usr/lib/gcc/arm-linux-gnueabihf/10/include/syslimits.h:7, 2026-02-13T04:57:48,061 from /usr/lib/gcc/arm-linux-gnueabihf/10/include/limits.h:34, 2026-02-13T04:57:48,062 from /usr/include/python3.9/Python.h:11, 2026-02-13T04:57:48,062 from pydnj.c:1: 2026-02-13T04:57:48,063 /usr/include/features.h:207: note: this is the location of the previous definition 2026-02-13T04:57:48,063 207 | # define _XOPEN_SOURCE 700 2026-02-13T04:57:48,064 | 2026-02-13T04:57:48,091 pydnj.c: In function ‘py_build’: 2026-02-13T04:57:48,091 pydnj.c:165:9: warning: implicit declaration of function ‘omp_get_num_procs’ [-Wimplicit-function-declaration] 2026-02-13T04:57:48,092 165 | p = omp_get_num_procs(); 2026-02-13T04:57:48,093 | ^~~~~~~~~~~~~~~~~ 2026-02-13T04:57:48,532 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c qseqs.c -o build/temp.linux-armv7l-cpython-39/qseqs.o -fopenmp 2026-02-13T04:57:48,994 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c str.c -o build/temp.linux-armv7l-cpython-39/str.o -fopenmp 2026-02-13T04:57:49,257 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c tmp.c -o build/temp.linux-armv7l-cpython-39/tmp.o -fopenmp 2026-02-13T04:57:49,713 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c vector.c -o build/temp.linux-armv7l-cpython-39/vector.o -fopenmp 2026-02-13T04:57:50,091 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/bytescale.o build/temp.linux-armv7l-cpython-39/dnj.o build/temp.linux-armv7l-cpython-39/filebuff.o build/temp.linux-armv7l-cpython-39/hclust.o build/temp.linux-armv7l-cpython-39/matrix.o build/temp.linux-armv7l-cpython-39/mman.o build/temp.linux-armv7l-cpython-39/nj.o build/temp.linux-armv7l-cpython-39/nwck.o build/temp.linux-armv7l-cpython-39/pherror.o build/temp.linux-armv7l-cpython-39/phy.o build/temp.linux-armv7l-cpython-39/pydnj.o build/temp.linux-armv7l-cpython-39/qseqs.o build/temp.linux-armv7l-cpython-39/str.o build/temp.linux-armv7l-cpython-39/tmp.o build/temp.linux-armv7l-cpython-39/vector.o -L/usr/lib -lz -o build/lib.linux-armv7l-cpython-39/dnj.cpython-39-arm-linux-gnueabihf.so -fopenmp 2026-02-13T04:57:50,538 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2026-02-13T04:57:50,539 !! 2026-02-13T04:57:50,540 ******************************************************************************** 2026-02-13T04:57:50,541 Please avoid running ``setup.py`` directly. 2026-02-13T04:57:50,541 Instead, use pypa/build, pypa/installer or other 2026-02-13T04:57:50,542 standards-based tools. 2026-02-13T04:57:50,543 This deprecation is overdue, please update your project and remove deprecated 2026-02-13T04:57:50,543 calls to avoid build errors in the future. 2026-02-13T04:57:50,544 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2026-02-13T04:57:50,545 ******************************************************************************** 2026-02-13T04:57:50,546 !! 2026-02-13T04:57:50,546 self.initialize_options() 2026-02-13T04:57:50,605 installing to build/bdist.linux-armv7l/wheel 2026-02-13T04:57:50,606 running install 2026-02-13T04:57:50,657 running install_lib 2026-02-13T04:57:50,738 creating build/bdist.linux-armv7l/wheel 2026-02-13T04:57:50,742 copying build/lib.linux-armv7l-cpython-39/kssd.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/. 2026-02-13T04:57:50,768 copying build/lib.linux-armv7l-cpython-39/dnj.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/. 2026-02-13T04:57:50,790 copying build/lib.linux-armv7l-cpython-39/nj.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/. 2026-02-13T04:57:50,800 copying build/lib.linux-armv7l-cpython-39/toolutils.py -> build/bdist.linux-armv7l/wheel/. 2026-02-13T04:57:50,805 copying build/lib.linux-armv7l-cpython-39/kssdtree.py -> build/bdist.linux-armv7l/wheel/. 2026-02-13T04:57:50,810 running install_egg_info 2026-02-13T04:57:50,935 Copying kssdtree.egg-info to build/bdist.linux-armv7l/wheel/./kssdtree-2.0.9-py3.9.egg-info 2026-02-13T04:57:50,961 running install_scripts 2026-02-13T04:57:51,073 creating build/bdist.linux-armv7l/wheel/kssdtree-2.0.9.dist-info/WHEEL 2026-02-13T04:57:51,079 creating '/tmp/pip-wheel-b3uqp7g9/kssdtree-2.0.9-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-02-13T04:57:51,275 adding 'dnj.cpython-39-arm-linux-gnueabihf.so' 2026-02-13T04:57:51,514 adding 'kssd.cpython-39-arm-linux-gnueabihf.so' 2026-02-13T04:57:51,527 adding 'kssdtree.py' 2026-02-13T04:57:51,581 adding 'nj.cpython-39-arm-linux-gnueabihf.so' 2026-02-13T04:57:51,588 adding 'toolutils.py' 2026-02-13T04:57:51,593 adding 'kssdtree-2.0.9.dist-info/METADATA' 2026-02-13T04:57:51,595 adding 'kssdtree-2.0.9.dist-info/WHEEL' 2026-02-13T04:57:51,597 adding 'kssdtree-2.0.9.dist-info/dependency_links.txt' 2026-02-13T04:57:51,599 adding 'kssdtree-2.0.9.dist-info/top_level.txt' 2026-02-13T04:57:51,601 adding 'kssdtree-2.0.9.dist-info/RECORD' 2026-02-13T04:57:51,617 removing build/bdist.linux-armv7l/wheel 2026-02-13T04:57:51,871 Building wheel for kssdtree (setup.py): finished with status 'done' 2026-02-13T04:57:51,888 Created wheel for kssdtree: filename=kssdtree-2.0.9-cp39-cp39-linux_armv7l.whl size=378266 sha256=8cecbe61db512da49bb15bc4ae7f87525c3af12ad0daedc31b88ad8c22c60bd3 2026-02-13T04:57:51,889 Stored in directory: /tmp/pip-ephem-wheel-cache-9_4vi_cv/wheels/20/dd/64/9d741f67e3fedef224c8c509eeafffa2433a434665e1b57f61 2026-02-13T04:57:51,909 Successfully built kssdtree 2026-02-13T04:57:51,944 Removed build tracker: '/tmp/pip-req-tracker-2o4w2_o2'