2026-02-13T16:21:34,982 Created temporary directory: /tmp/pip-ephem-wheel-cache-g_oxv103 2026-02-13T16:21:34,984 Created temporary directory: /tmp/pip-build-tracker-efaquvio 2026-02-13T16:21:34,984 Initialized build tracking at /tmp/pip-build-tracker-efaquvio 2026-02-13T16:21:34,985 Created build tracker: /tmp/pip-build-tracker-efaquvio 2026-02-13T16:21:34,985 Entered build tracker: /tmp/pip-build-tracker-efaquvio 2026-02-13T16:21:34,986 Created temporary directory: /tmp/pip-wheel-ajfocba4 2026-02-13T16:21:34,989 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-02-13T16:21:34,992 Created temporary directory: /tmp/pip-ephem-wheel-cache-3w3qjk_9 2026-02-13T16:21:35,013 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-02-13T16:21:35,016 2 location(s) to search for versions of scipion-em-membrain: 2026-02-13T16:21:35,016 * https://pypi.org/simple/scipion-em-membrain/ 2026-02-13T16:21:35,016 * https://www.piwheels.org/simple/scipion-em-membrain/ 2026-02-13T16:21:35,017 Fetching project page and analyzing links: https://pypi.org/simple/scipion-em-membrain/ 2026-02-13T16:21:35,018 Getting page https://pypi.org/simple/scipion-em-membrain/ 2026-02-13T16:21:35,019 Found index url https://pypi.org/simple 2026-02-13T16:21:35,237 Fetched page https://pypi.org/simple/scipion-em-membrain/ as application/vnd.pypi.simple.v1+json 2026-02-13T16:21:35,241 Skipping link: No binaries permitted for scipion-em-membrain: https://files.pythonhosted.org/packages/75/bd/9e8ca0d268f3f5d026895eb9176dcd5b4e34bfe885688f0bea727c6f58c2/scipion_em_membrain-3.0.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-membrain/) (requires-python:>=3.8) 2026-02-13T16:21:35,242 Found link https://files.pythonhosted.org/packages/97/ad/96d7ecc261d6e17ff53df76ab29161212cda86085e96130731d4cd102684/scipion_em_membrain-3.0.0.tar.gz (from https://pypi.org/simple/scipion-em-membrain/) (requires-python:>=3.8), version: 3.0.0 2026-02-13T16:21:35,242 Skipping link: No binaries permitted for scipion-em-membrain: https://files.pythonhosted.org/packages/16/f6/54d319054f5593143037c8c8d76a95c3fea4a5a382ec56f20d369e9f5e27/scipion_em_membrain-3.0.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-membrain/) (requires-python:>=3.8) 2026-02-13T16:21:35,243 Found link https://files.pythonhosted.org/packages/1a/48/49f5dd87c57c3b00191b3e428824d7725687a10d62996cf1efdc3ea9be44/scipion_em_membrain-3.0.1.tar.gz (from https://pypi.org/simple/scipion-em-membrain/) (requires-python:>=3.8), version: 3.0.1 2026-02-13T16:21:35,244 Skipping link: No binaries permitted for scipion-em-membrain: https://files.pythonhosted.org/packages/b8/e5/8c8efb548da52e579491ad01cacb4519f15057c38fd9add04f4cc7ed406a/scipion_em_membrain-3.1.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-membrain/) (requires-python:>=3.8) 2026-02-13T16:21:35,245 Found link https://files.pythonhosted.org/packages/e6/ad/638eeab06f72c0db15f0e2ae521dbc4f3185d84b5ecf707cca71eedce3fa/scipion_em_membrain-3.1.0.tar.gz (from https://pypi.org/simple/scipion-em-membrain/) (requires-python:>=3.8), version: 3.1.0 2026-02-13T16:21:35,246 Skipping link: No binaries permitted for scipion-em-membrain: https://files.pythonhosted.org/packages/26/b4/6d0d3c35fe6277640711ebba246141c9d2275c4a31cd3b00c2c1b4cda722/scipion_em_membrain-3.1.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-membrain/) (requires-python:>=3.8) 2026-02-13T16:21:35,247 Found link https://files.pythonhosted.org/packages/71/c2/e83765bdf569131e520c8fa0befb95603c1b5f5eb3bdafb1f88a7a2f6282/scipion_em_membrain-3.1.1.tar.gz (from https://pypi.org/simple/scipion-em-membrain/) (requires-python:>=3.8), version: 3.1.1 2026-02-13T16:21:35,248 Skipping link: No binaries permitted for scipion-em-membrain: https://files.pythonhosted.org/packages/f4/f6/493df78c5d8f87f301edfa70c1001e023502cad1536cb1afd08988514aba/scipion_em_membrain-3.1.2-py3-none-any.whl (from https://pypi.org/simple/scipion-em-membrain/) (requires-python:>=3.8) 2026-02-13T16:21:35,249 Found link https://files.pythonhosted.org/packages/e0/95/d6271a556ceb3c6bf59a79a97b5dabf62d21152fce4306f01a7248f9aeb5/scipion_em_membrain-3.1.2.tar.gz (from https://pypi.org/simple/scipion-em-membrain/) (requires-python:>=3.8), version: 3.1.2 2026-02-13T16:21:35,251 Skipping link: No binaries permitted for scipion-em-membrain: https://files.pythonhosted.org/packages/85/3c/12ca83d143dd6e9ceea103ca23577800ca5b466e505e06cf3155aaf0cfd7/scipion_em_membrain-3.1.3-py3-none-any.whl (from https://pypi.org/simple/scipion-em-membrain/) (requires-python:>=3.8) 2026-02-13T16:21:35,252 Found link https://files.pythonhosted.org/packages/ea/c6/4acb4030111490934273f6b4745d2fa86c86a12057129d366dfd0acec927/scipion_em_membrain-3.1.3.tar.gz (from https://pypi.org/simple/scipion-em-membrain/) (requires-python:>=3.8), version: 3.1.3 2026-02-13T16:21:35,253 Skipping link: No binaries permitted for scipion-em-membrain: https://files.pythonhosted.org/packages/63/02/cbb0b2b521f39abb9a6bb8ef1162ea370e9e28c3a863184ed390c8ae2680/scipion_em_membrain-3.1.4-py3-none-any.whl (from https://pypi.org/simple/scipion-em-membrain/) (requires-python:>=3.8) 2026-02-13T16:21:35,254 Found link https://files.pythonhosted.org/packages/2a/fb/9981f62bdee5e1c0314738e0d7c26986de0a03b9ac3c358fcc741649f39d/scipion_em_membrain-3.1.4.tar.gz (from https://pypi.org/simple/scipion-em-membrain/) (requires-python:>=3.8), version: 3.1.4 2026-02-13T16:21:35,255 Skipping link: No binaries permitted for scipion-em-membrain: https://files.pythonhosted.org/packages/8a/41/7a6227740e60ce1cf0364d937f516b746d400d06d54185cebbd5ee133815/scipion_em_membrain-3.1.5-py3-none-any.whl (from https://pypi.org/simple/scipion-em-membrain/) (requires-python:>=3.8) 2026-02-13T16:21:35,256 Found link https://files.pythonhosted.org/packages/d6/88/a040b7f77ca7bd484e6bdc98f9722f396f768fd45fa3d1b12e70df047198/scipion_em_membrain-3.1.5.tar.gz (from https://pypi.org/simple/scipion-em-membrain/) (requires-python:>=3.8), version: 3.1.5 2026-02-13T16:21:35,257 Fetching project page and analyzing links: https://www.piwheels.org/simple/scipion-em-membrain/ 2026-02-13T16:21:35,258 Getting page https://www.piwheels.org/simple/scipion-em-membrain/ 2026-02-13T16:21:35,260 Found index url https://www.piwheels.org/simple 2026-02-13T16:21:35,424 Fetched page https://www.piwheels.org/simple/scipion-em-membrain/ as text/html 2026-02-13T16:21:35,427 Skipping link: No binaries permitted for scipion-em-membrain: https://www.piwheels.org/simple/scipion-em-membrain/scipion_em_membrain-3.1.4-py3-none-any.whl#sha256=9609ed5bb3a303f7e4c46a806ab10ab732a9e4cfa6c3fe0905cdf1501cd25ac5 (from https://www.piwheels.org/simple/scipion-em-membrain/) (requires-python:>=3.8) 2026-02-13T16:21:35,428 Skipping link: No binaries permitted for scipion-em-membrain: https://www.piwheels.org/simple/scipion-em-membrain/scipion_em_membrain-3.1.3-py3-none-any.whl#sha256=8629981c9411de3c13c53a1588551e62606739ac320dac5845bb8cd03b1e4a94 (from https://www.piwheels.org/simple/scipion-em-membrain/) (requires-python:>=3.8) 2026-02-13T16:21:35,429 Skipping link: No binaries permitted for scipion-em-membrain: https://www.piwheels.org/simple/scipion-em-membrain/scipion_em_membrain-3.1.2-py3-none-any.whl#sha256=601d5f677a855dc255935b3606636201a73c119ee48d2737331cb3248ba9de84 (from https://www.piwheels.org/simple/scipion-em-membrain/) (requires-python:>=3.8) 2026-02-13T16:21:35,429 Skipping link: No binaries permitted for scipion-em-membrain: https://www.piwheels.org/simple/scipion-em-membrain/scipion_em_membrain-3.1.1-py3-none-any.whl#sha256=4cedc68f5e116d5829618b8ce019a7adad2e9c9d86a222cb1b7738d642140397 (from https://www.piwheels.org/simple/scipion-em-membrain/) (requires-python:>=3.8) 2026-02-13T16:21:35,430 Skipping link: No binaries permitted for scipion-em-membrain: https://www.piwheels.org/simple/scipion-em-membrain/scipion_em_membrain-3.1.0-py3-none-any.whl#sha256=467e45e3b7b82f4f268b6e19f09a6b4d7cceb345a354542230e08841da968615 (from https://www.piwheels.org/simple/scipion-em-membrain/) (requires-python:>=3.8) 2026-02-13T16:21:35,430 Skipping link: No binaries permitted for scipion-em-membrain: https://www.piwheels.org/simple/scipion-em-membrain/scipion_em_membrain-3.0.1-py3-none-any.whl#sha256=5f445fad858170f1d787321c9ff8aa8183c797adb0b8fc5c9152892a53032003 (from https://www.piwheels.org/simple/scipion-em-membrain/) (requires-python:>=3.8) 2026-02-13T16:21:35,431 Skipping link: No binaries permitted for scipion-em-membrain: https://archive1.piwheels.org/simple/scipion-em-membrain/scipion_em_membrain-3.0.0-py3-none-any.whl#sha256=af53292bbc51cab29f0a8a12b9ce20dc7efa79c0b687451426d0beef96f1c465 (from https://www.piwheels.org/simple/scipion-em-membrain/) (requires-python:>=3.8) 2026-02-13T16:21:35,432 Skipping link: not a file: https://www.piwheels.org/simple/scipion-em-membrain/ 2026-02-13T16:21:35,432 Skipping link: not a file: https://pypi.org/simple/scipion-em-membrain/ 2026-02-13T16:21:35,453 Given no hashes to check 1 links for project 'scipion-em-membrain': discarding no candidates 2026-02-13T16:21:35,472 Collecting scipion-em-membrain==3.1.5 2026-02-13T16:21:35,475 Created temporary directory: /tmp/pip-unpack-h7af_g8a 2026-02-13T16:21:35,690 Downloading scipion_em_membrain-3.1.5.tar.gz (89 kB) 2026-02-13T16:21:35,813 Added scipion-em-membrain==3.1.5 from https://files.pythonhosted.org/packages/d6/88/a040b7f77ca7bd484e6bdc98f9722f396f768fd45fa3d1b12e70df047198/scipion_em_membrain-3.1.5.tar.gz to build tracker '/tmp/pip-build-tracker-efaquvio' 2026-02-13T16:21:35,818 Created temporary directory: /tmp/pip-build-env-00lflcdn 2026-02-13T16:21:35,823 Installing build dependencies: started 2026-02-13T16:21:35,824 Running command pip subprocess to install build dependencies 2026-02-13T16:21:36,952 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-02-13T16:21:37,513 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-02-13T16:21:37,536 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-02-13T16:21:39,291 Collecting setuptools 2026-02-13T16:21:39,383 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.0-py3-none-any.whl (1.0 MB) 2026-02-13T16:21:39,653 Collecting wheel 2026-02-13T16:21:39,669 Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB) 2026-02-13T16:21:39,856 Collecting packaging>=24.0 2026-02-13T16:21:39,872 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-02-13T16:21:42,901 Installing collected packages: setuptools, packaging, wheel 2026-02-13T16:21:46,263 Creating /tmp/pip-build-env-00lflcdn/overlay/local/bin 2026-02-13T16:21:46,265 changing mode of /tmp/pip-build-env-00lflcdn/overlay/local/bin/wheel to 755 2026-02-13T16:21:46,286 Successfully installed packaging-26.0 setuptools-82.0.0 wheel-0.46.3 2026-02-13T16:21:46,564 Installing build dependencies: finished with status 'done' 2026-02-13T16:21:46,571 Getting requirements to build wheel: started 2026-02-13T16:21:46,572 Running command Getting requirements to build wheel 2026-02-13T16:21:47,193 No `packages` or `py_modules` configuration, performing automatic discovery. 2026-02-13T16:21:47,193 `flat-layout` detected -- analysing . 2026-02-13T16:21:47,209 discovered packages -- ['membrain', 'membrain.tests', 'membrain.protocols'] 2026-02-13T16:21:47,216 /tmp/pip-build-env-00lflcdn/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-02-13T16:21:47,216 !! 2026-02-13T16:21:47,218 ******************************************************************************** 2026-02-13T16:21:47,218 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-02-13T16:21:47,219 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-02-13T16:21:47,219 or your builds will no longer be supported. 2026-02-13T16:21:47,220 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-13T16:21:47,221 ******************************************************************************** 2026-02-13T16:21:47,222 !! 2026-02-13T16:21:47,222 corresp(dist, value, root_dir) 2026-02-13T16:21:47,296 /tmp/pip-build-env-00lflcdn/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-02-13T16:21:47,297 !! 2026-02-13T16:21:47,298 ******************************************************************************** 2026-02-13T16:21:47,298 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-02-13T16:21:47,299 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-02-13T16:21:47,300 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-13T16:21:47,301 ******************************************************************************** 2026-02-13T16:21:47,302 !! 2026-02-13T16:21:47,302 dist._finalize_license_expression() 2026-02-13T16:21:47,303 /tmp/pip-build-env-00lflcdn/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-02-13T16:21:47,303 !! 2026-02-13T16:21:47,305 ******************************************************************************** 2026-02-13T16:21:47,305 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-02-13T16:21:47,307 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-02-13T16:21:47,308 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-13T16:21:47,308 ******************************************************************************** 2026-02-13T16:21:47,310 !! 2026-02-13T16:21:47,310 self._finalize_license_expression() 2026-02-13T16:21:47,311 running egg_info 2026-02-13T16:21:47,312 writing scipion_em_membrain.egg-info/PKG-INFO 2026-02-13T16:21:47,315 writing dependency_links to scipion_em_membrain.egg-info/dependency_links.txt 2026-02-13T16:21:47,317 writing entry points to scipion_em_membrain.egg-info/entry_points.txt 2026-02-13T16:21:47,319 writing requirements to scipion_em_membrain.egg-info/requires.txt 2026-02-13T16:21:47,320 writing top-level names to scipion_em_membrain.egg-info/top_level.txt 2026-02-13T16:21:47,342 reading manifest file 'scipion_em_membrain.egg-info/SOURCES.txt' 2026-02-13T16:21:47,345 reading manifest template 'MANIFEST.in' 2026-02-13T16:21:47,347 adding license file 'LICENSE' 2026-02-13T16:21:47,350 writing manifest file 'scipion_em_membrain.egg-info/SOURCES.txt' 2026-02-13T16:21:47,447 Getting requirements to build wheel: finished with status 'done' 2026-02-13T16:21:47,451 Created temporary directory: /tmp/pip-modern-metadata-ydcjpfyy 2026-02-13T16:21:47,453 Preparing metadata (pyproject.toml): started 2026-02-13T16:21:47,454 Running command Preparing metadata (pyproject.toml) 2026-02-13T16:21:48,010 No `packages` or `py_modules` configuration, performing automatic discovery. 2026-02-13T16:21:48,010 `flat-layout` detected -- analysing . 2026-02-13T16:21:48,026 discovered packages -- ['membrain', 'membrain.tests', 'membrain.protocols'] 2026-02-13T16:21:48,032 /tmp/pip-build-env-00lflcdn/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-02-13T16:21:48,033 !! 2026-02-13T16:21:48,034 ******************************************************************************** 2026-02-13T16:21:48,034 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-02-13T16:21:48,035 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-02-13T16:21:48,036 or your builds will no longer be supported. 2026-02-13T16:21:48,036 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-13T16:21:48,037 ******************************************************************************** 2026-02-13T16:21:48,038 !! 2026-02-13T16:21:48,038 corresp(dist, value, root_dir) 2026-02-13T16:21:48,108 /tmp/pip-build-env-00lflcdn/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-02-13T16:21:48,109 !! 2026-02-13T16:21:48,110 ******************************************************************************** 2026-02-13T16:21:48,110 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-02-13T16:21:48,111 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-02-13T16:21:48,112 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-13T16:21:48,113 ******************************************************************************** 2026-02-13T16:21:48,114 !! 2026-02-13T16:21:48,115 dist._finalize_license_expression() 2026-02-13T16:21:48,115 /tmp/pip-build-env-00lflcdn/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-02-13T16:21:48,116 !! 2026-02-13T16:21:48,117 ******************************************************************************** 2026-02-13T16:21:48,117 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-02-13T16:21:48,119 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-02-13T16:21:48,120 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-13T16:21:48,120 ******************************************************************************** 2026-02-13T16:21:48,121 !! 2026-02-13T16:21:48,122 self._finalize_license_expression() 2026-02-13T16:21:48,122 running dist_info 2026-02-13T16:21:48,132 creating /tmp/pip-modern-metadata-ydcjpfyy/scipion_em_membrain.egg-info 2026-02-13T16:21:48,133 writing /tmp/pip-modern-metadata-ydcjpfyy/scipion_em_membrain.egg-info/PKG-INFO 2026-02-13T16:21:48,136 writing dependency_links to /tmp/pip-modern-metadata-ydcjpfyy/scipion_em_membrain.egg-info/dependency_links.txt 2026-02-13T16:21:48,138 writing entry points to /tmp/pip-modern-metadata-ydcjpfyy/scipion_em_membrain.egg-info/entry_points.txt 2026-02-13T16:21:48,139 writing requirements to /tmp/pip-modern-metadata-ydcjpfyy/scipion_em_membrain.egg-info/requires.txt 2026-02-13T16:21:48,140 writing top-level names to /tmp/pip-modern-metadata-ydcjpfyy/scipion_em_membrain.egg-info/top_level.txt 2026-02-13T16:21:48,142 writing manifest file '/tmp/pip-modern-metadata-ydcjpfyy/scipion_em_membrain.egg-info/SOURCES.txt' 2026-02-13T16:21:48,160 reading manifest file '/tmp/pip-modern-metadata-ydcjpfyy/scipion_em_membrain.egg-info/SOURCES.txt' 2026-02-13T16:21:48,162 reading manifest template 'MANIFEST.in' 2026-02-13T16:21:48,164 adding license file 'LICENSE' 2026-02-13T16:21:48,167 writing manifest file '/tmp/pip-modern-metadata-ydcjpfyy/scipion_em_membrain.egg-info/SOURCES.txt' 2026-02-13T16:21:48,168 creating '/tmp/pip-modern-metadata-ydcjpfyy/scipion_em_membrain-3.1.5.dist-info' 2026-02-13T16:21:48,292 Preparing metadata (pyproject.toml): finished with status 'done' 2026-02-13T16:21:48,296 Source in /tmp/pip-wheel-ajfocba4/scipion-em-membrain_ea2ee7da48d54a98b3b069bd27f68f76 has version 3.1.5, which satisfies requirement scipion-em-membrain==3.1.5 from https://files.pythonhosted.org/packages/d6/88/a040b7f77ca7bd484e6bdc98f9722f396f768fd45fa3d1b12e70df047198/scipion_em_membrain-3.1.5.tar.gz 2026-02-13T16:21:48,297 Removed scipion-em-membrain==3.1.5 from https://files.pythonhosted.org/packages/d6/88/a040b7f77ca7bd484e6bdc98f9722f396f768fd45fa3d1b12e70df047198/scipion_em_membrain-3.1.5.tar.gz from build tracker '/tmp/pip-build-tracker-efaquvio' 2026-02-13T16:21:48,302 Created temporary directory: /tmp/pip-unpack-otx45mmm 2026-02-13T16:21:48,303 Building wheels for collected packages: scipion-em-membrain 2026-02-13T16:21:48,307 Created temporary directory: /tmp/pip-wheel-wcf461mh 2026-02-13T16:21:48,308 Destination directory: /tmp/pip-wheel-wcf461mh 2026-02-13T16:21:48,310 Building wheel for scipion-em-membrain (pyproject.toml): started 2026-02-13T16:21:48,311 Running command Building wheel for scipion-em-membrain (pyproject.toml) 2026-02-13T16:21:48,848 No `packages` or `py_modules` configuration, performing automatic discovery. 2026-02-13T16:21:48,848 `flat-layout` detected -- analysing . 2026-02-13T16:21:48,863 discovered packages -- ['membrain', 'membrain.tests', 'membrain.protocols'] 2026-02-13T16:21:48,869 /tmp/pip-build-env-00lflcdn/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-02-13T16:21:48,870 !! 2026-02-13T16:21:48,871 ******************************************************************************** 2026-02-13T16:21:48,871 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-02-13T16:21:48,872 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-02-13T16:21:48,873 or your builds will no longer be supported. 2026-02-13T16:21:48,874 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-13T16:21:48,874 ******************************************************************************** 2026-02-13T16:21:48,876 !! 2026-02-13T16:21:48,876 corresp(dist, value, root_dir) 2026-02-13T16:21:48,937 /tmp/pip-build-env-00lflcdn/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-02-13T16:21:48,937 !! 2026-02-13T16:21:48,938 ******************************************************************************** 2026-02-13T16:21:48,939 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-02-13T16:21:48,940 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-02-13T16:21:48,941 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-13T16:21:48,942 ******************************************************************************** 2026-02-13T16:21:48,943 !! 2026-02-13T16:21:48,943 dist._finalize_license_expression() 2026-02-13T16:21:48,944 /tmp/pip-build-env-00lflcdn/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-02-13T16:21:48,945 !! 2026-02-13T16:21:48,946 ******************************************************************************** 2026-02-13T16:21:48,946 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-02-13T16:21:48,948 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-02-13T16:21:48,948 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-02-13T16:21:48,949 ******************************************************************************** 2026-02-13T16:21:48,950 !! 2026-02-13T16:21:48,950 self._finalize_license_expression() 2026-02-13T16:21:48,951 running bdist_wheel 2026-02-13T16:21:48,962 running build 2026-02-13T16:21:48,962 running build_py 2026-02-13T16:21:48,968 creating build/lib/membrain 2026-02-13T16:21:48,970 copying membrain/__init__.py -> build/lib/membrain 2026-02-13T16:21:48,972 copying membrain/constants.py -> build/lib/membrain 2026-02-13T16:21:48,974 copying membrain/bibtex.py -> build/lib/membrain 2026-02-13T16:21:48,977 creating build/lib/membrain/tests 2026-02-13T16:21:48,978 copying membrain/tests/__init__.py -> build/lib/membrain/tests 2026-02-13T16:21:48,980 copying membrain/tests/test_membrain.py -> build/lib/membrain/tests 2026-02-13T16:21:48,982 creating build/lib/membrain/protocols 2026-02-13T16:21:48,983 copying membrain/protocols/__init__.py -> build/lib/membrain/protocols 2026-02-13T16:21:48,985 copying membrain/protocols/protocol_membrain_seg.py -> build/lib/membrain/protocols 2026-02-13T16:21:48,988 copying membrain/protocols/protocol_membrain_skeletonize.py -> build/lib/membrain/protocols 2026-02-13T16:21:48,989 running egg_info 2026-02-13T16:21:48,999 writing scipion_em_membrain.egg-info/PKG-INFO 2026-02-13T16:21:49,002 writing dependency_links to scipion_em_membrain.egg-info/dependency_links.txt 2026-02-13T16:21:49,003 writing entry points to scipion_em_membrain.egg-info/entry_points.txt 2026-02-13T16:21:49,004 writing requirements to scipion_em_membrain.egg-info/requires.txt 2026-02-13T16:21:49,005 writing top-level names to scipion_em_membrain.egg-info/top_level.txt 2026-02-13T16:21:49,016 reading manifest file 'scipion_em_membrain.egg-info/SOURCES.txt' 2026-02-13T16:21:49,018 reading manifest template 'MANIFEST.in' 2026-02-13T16:21:49,020 adding license file 'LICENSE' 2026-02-13T16:21:49,023 writing manifest file 'scipion_em_membrain.egg-info/SOURCES.txt' 2026-02-13T16:21:49,027 copying membrain/icon.png -> build/lib/membrain 2026-02-13T16:21:49,030 copying membrain/protocols.conf -> build/lib/membrain 2026-02-13T16:21:49,042 installing to build/bdist.linux-armv7l/wheel 2026-02-13T16:21:49,043 running install 2026-02-13T16:21:49,066 running install_lib 2026-02-13T16:21:49,072 creating build/bdist.linux-armv7l/wheel 2026-02-13T16:21:49,074 creating build/bdist.linux-armv7l/wheel/membrain 2026-02-13T16:21:49,075 copying build/lib/membrain/__init__.py -> build/bdist.linux-armv7l/wheel/./membrain 2026-02-13T16:21:49,077 copying build/lib/membrain/protocols.conf -> build/bdist.linux-armv7l/wheel/./membrain 2026-02-13T16:21:49,080 creating build/bdist.linux-armv7l/wheel/membrain/tests 2026-02-13T16:21:49,081 copying build/lib/membrain/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./membrain/tests 2026-02-13T16:21:49,082 copying build/lib/membrain/tests/test_membrain.py -> build/bdist.linux-armv7l/wheel/./membrain/tests 2026-02-13T16:21:49,085 creating build/bdist.linux-armv7l/wheel/membrain/protocols 2026-02-13T16:21:49,086 copying build/lib/membrain/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/./membrain/protocols 2026-02-13T16:21:49,088 copying build/lib/membrain/protocols/protocol_membrain_seg.py -> build/bdist.linux-armv7l/wheel/./membrain/protocols 2026-02-13T16:21:49,091 copying build/lib/membrain/protocols/protocol_membrain_skeletonize.py -> build/bdist.linux-armv7l/wheel/./membrain/protocols 2026-02-13T16:21:49,094 copying build/lib/membrain/constants.py -> build/bdist.linux-armv7l/wheel/./membrain 2026-02-13T16:21:49,096 copying build/lib/membrain/icon.png -> build/bdist.linux-armv7l/wheel/./membrain 2026-02-13T16:21:49,099 copying build/lib/membrain/bibtex.py -> build/bdist.linux-armv7l/wheel/./membrain 2026-02-13T16:21:49,101 running install_egg_info 2026-02-13T16:21:49,105 Copying scipion_em_membrain.egg-info to build/bdist.linux-armv7l/wheel/./scipion_em_membrain-3.1.5-py3.11.egg-info 2026-02-13T16:21:49,117 running install_scripts 2026-02-13T16:21:49,130 creating build/bdist.linux-armv7l/wheel/scipion_em_membrain-3.1.5.dist-info/WHEEL 2026-02-13T16:21:49,133 creating '/tmp/pip-wheel-wcf461mh/.tmp-fuhz13ji/scipion_em_membrain-3.1.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-02-13T16:21:49,136 adding 'membrain/__init__.py' 2026-02-13T16:21:49,138 adding 'membrain/bibtex.py' 2026-02-13T16:21:49,139 adding 'membrain/constants.py' 2026-02-13T16:21:49,146 adding 'membrain/icon.png' 2026-02-13T16:21:49,148 adding 'membrain/protocols.conf' 2026-02-13T16:21:49,149 adding 'membrain/protocols/__init__.py' 2026-02-13T16:21:49,152 adding 'membrain/protocols/protocol_membrain_seg.py' 2026-02-13T16:21:49,154 adding 'membrain/protocols/protocol_membrain_skeletonize.py' 2026-02-13T16:21:49,155 adding 'membrain/tests/__init__.py' 2026-02-13T16:21:49,157 adding 'membrain/tests/test_membrain.py' 2026-02-13T16:21:49,165 adding 'scipion_em_membrain-3.1.5.dist-info/licenses/LICENSE' 2026-02-13T16:21:49,166 adding 'scipion_em_membrain-3.1.5.dist-info/METADATA' 2026-02-13T16:21:49,167 adding 'scipion_em_membrain-3.1.5.dist-info/WHEEL' 2026-02-13T16:21:49,168 adding 'scipion_em_membrain-3.1.5.dist-info/entry_points.txt' 2026-02-13T16:21:49,169 adding 'scipion_em_membrain-3.1.5.dist-info/top_level.txt' 2026-02-13T16:21:49,170 adding 'scipion_em_membrain-3.1.5.dist-info/RECORD' 2026-02-13T16:21:49,172 removing build/bdist.linux-armv7l/wheel 2026-02-13T16:21:49,276 Building wheel for scipion-em-membrain (pyproject.toml): finished with status 'done' 2026-02-13T16:21:49,282 Created wheel for scipion-em-membrain: filename=scipion_em_membrain-3.1.5-py3-none-any.whl size=91160 sha256=bd7e9260dff70743c797023c558bee08b255d8ddda2185e0b74b3c3174ec684d 2026-02-13T16:21:49,284 Stored in directory: /tmp/pip-ephem-wheel-cache-3w3qjk_9/wheels/b4/de/b7/d4a10ffed8aa626550442b3653232cc8ea1ac16293578ace5b 2026-02-13T16:21:49,295 Successfully built scipion-em-membrain 2026-02-13T16:21:49,301 Removed build tracker: '/tmp/pip-build-tracker-efaquvio'