2026-02-14T09:50:54,820 Created temporary directory: /tmp/pip-ephem-wheel-cache-sr__3za0 2026-02-14T09:50:54,822 Created temporary directory: /tmp/pip-build-tracker-qir4119n 2026-02-14T09:50:54,822 Initialized build tracking at /tmp/pip-build-tracker-qir4119n 2026-02-14T09:50:54,823 Created build tracker: /tmp/pip-build-tracker-qir4119n 2026-02-14T09:50:54,823 Entered build tracker: /tmp/pip-build-tracker-qir4119n 2026-02-14T09:50:54,824 Created temporary directory: /tmp/pip-wheel-ahows7lm 2026-02-14T09:50:54,827 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-02-14T09:50:54,830 Created temporary directory: /tmp/pip-ephem-wheel-cache-co2dva_8 2026-02-14T09:50:54,851 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-02-14T09:50:54,855 2 location(s) to search for versions of rna-tools: 2026-02-14T09:50:54,855 * https://pypi.org/simple/rna-tools/ 2026-02-14T09:50:54,855 * https://www.piwheels.org/simple/rna-tools/ 2026-02-14T09:50:54,856 Fetching project page and analyzing links: https://pypi.org/simple/rna-tools/ 2026-02-14T09:50:54,856 Getting page https://pypi.org/simple/rna-tools/ 2026-02-14T09:50:54,858 Found index url https://pypi.org/simple 2026-02-14T09:50:54,996 Fetched page https://pypi.org/simple/rna-tools/ as application/vnd.pypi.simple.v1+json 2026-02-14T09:50:55,019 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/27/ac/deae7e0ec9e64474a213fa4df809dfc43e5626df0b915eb7c8f51d4f9f85/rna_tools-2.25.post0.dev1-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-02-14T09:50:55,020 Found link https://files.pythonhosted.org/packages/0c/8d/174c2cc3b4e5021404cd7d7138ccee40167ac352360bcc3b91b44e971d32/rna_tools-2.25.post0.dev1.tar.gz (from https://pypi.org/simple/rna-tools/), version: 2.25.post0.dev1 2026-02-14T09:50:55,021 Found link https://files.pythonhosted.org/packages/4e/b0/7b809484967fa28b258a2b68c30d7bec5888457b012992c55f76758818e0/rna-tools-3.1.1.tar.gz (from https://pypi.org/simple/rna-tools/), version: 3.1.1 2026-02-14T09:50:55,021 Found link https://files.pythonhosted.org/packages/3a/6e/619cc9d4a4517d045024cd088ac8eb1401de769b1d43b6d93515250796a6/rna-tools-3.1.2.tar.gz (from https://pypi.org/simple/rna-tools/), version: 3.1.2 2026-02-14T09:50:55,022 Found link 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2026-02-14T09:50:55,029 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/5f/b2/062399b540ef2a40520d6d912209721ee7fc1268abcff3c304fc5fcde93d/rna_tools-3.3.2-py2-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-02-14T09:50:55,030 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/63/3d/c5ec1795c49e47d1a2c8ce53fd6af723be70ea726eefa1c20cbcba793fcc/rna_tools-3.4.0-py2-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-02-14T09:50:55,030 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/26/fd/a1b2383b98af42ac57521a2d247f301d508afd5dd63d02974a6bece261ce/rna_tools-3.4.0-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-02-14T09:50:55,031 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/31/38/4544bbb5588b52df0910454554b071443046560010b372f3dd09379d1cc0/rna_tools-3.4.1-py2-none-any.whl (from 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2026-02-14T09:50:55,038 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/e0/92/4010b5d4bacc7047fb68d0eb51aa21d18968bead37b87bad04c07730b855/rna_tools-3.5.4-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-02-14T09:50:55,038 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/ac/4c/606fe4ea704d03e186e82e2cc94e01f4c895e9c1cb0dac8d72bd613b3644/rna_tools-3.5.5-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-02-14T09:50:55,039 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/f6/e8/647108209022fa3ff2b69af1ed16a861981096211df6efe0d8dc1da056d5/rna_tools-3.6-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-02-14T09:50:55,040 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/03/85/c816e24a9acd50ab582bfba3048f23f1a59a012cd8e979c93b4634027b35/rna_tools-3.6.1-py3-none-any.whl (from 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https://files.pythonhosted.org/packages/c4/67/140758300c943992c4674f6ce353cc9cef735fa10ac000f95878386d7141/rna_tools-3.7.2-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-02-14T09:50:55,043 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/a1/d3/2e1570a828267c1c3677bc4717e043bbf9aea35f26cd2bb32ce96d3151ca/rna_tools-3.7.3-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-02-14T09:50:55,043 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/ea/c8/cd108dbd0fa39e25e8cb148e6b97ddf0397f88f3cced794e87794c188729/rna_tools-3.7.4-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-02-14T09:50:55,044 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/d6/28/ea20784ef8ee605834b4b5fa95cc749eea4567467e3079e6b792db58967e/rna_tools-3.7.7-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-02-14T09:50:55,045 Skipping link: No 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2026-02-14T09:50:55,047 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/06/33/f1200ba13560982209354d0f0dc5e7497ade51d176f68a8dbcc229fe1085/rna_tools-3.7.12-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-02-14T09:50:55,047 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/a2/71/528a9fa0822567e48d0e5fd72dacdf52547145fcf5dcc5f09536bd255f49/rna_tools-3.7.13-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-02-14T09:50:55,048 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/74/8c/77cfd3f1294bc4935f10f93c6e69a86189948fd06d2e31e6d48e24a6063a/rna_tools-3.7.14-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-02-14T09:50:55,048 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/1e/fe/1c9720fa09b24440bb9508d8a2673892884c5fc5d5b4bff841bd886761c5/rna_tools-3.7.15-py3-none-any.whl (from 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2026-02-14T09:50:55,055 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/dd/c2/ffe7c96c9e912798393a688c112e755a001ffa521d885176976b48af6fc6/rna_tools-3.8.11-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-02-14T09:50:55,056 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/ca/e2/fd4e35ad632d744c9e649f94344d4ab386980ae8a9d4bc22eb1b6d9f714e/rna_tools-3.8.11.post0.dev2-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-02-14T09:50:55,056 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/7b/0f/5d2c73ef6ea38577d7edcf672f6c5a824ec5dbdcc8d792459cc7388dffa3/rna_tools-3.8.11.1-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-02-14T09:50:55,057 Skipping link: No binaries permitted for rna-tools: 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2026-02-14T09:50:55,074 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/56/6c/bd8607e69de5e63f72decf4398bee9c90ee391eff6d4451005de8156ca15/rna_tools-3.19-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-02-14T09:50:55,074 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/ae/5f/e57ac244bd51cff84868a22eb6a5faf2c1b6b616bcd6b4e9e47c3e1f1c8b/rna_tools-3.20-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-02-14T09:50:55,075 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/8b/01/201b394e887e5e7f5b719ed76710649177c687c99e7223a9ea7943266e0e/rna_tools-3.20.1-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-02-14T09:50:55,075 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/1f/f1/2b93875467d8768d8d5964319bf3a942135385be9d4f0ce6a5ff214b7452/rna_tools-3.20.2-py3-none-any.whl (from 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https://files.pythonhosted.org/packages/1f/ff/b46f4fb145fa3debabee58351371e12335e245d598f627bd6a326daed13e/rna_tools-3.22.1-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-02-14T09:50:55,078 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/cc/21/46eb127af883db354478507ef53350958a4b99b2b78b23658bc3daa652f3/rna_tools-3.22.2-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-02-14T09:50:55,079 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/53/c5/cbfcb8911f14b963ecd95bc7ed9fd49413bc0454aedd61b8063899d2449d/rna_tools-3.22.3-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-02-14T09:50:55,080 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/e6/07/121915f57db55b93e89a6dd5ebea44661fe78b73b2a237cf5b72444a8ba9/rna_tools-3.22.4-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-02-14T09:50:55,080 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/d3/86/393db491384fe40b69b2af4035bd6e45f91d5e184d8e7b0e8c9b21cdcc53/rna_tools-3.22.5-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-02-14T09:50:55,081 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/54/f7/84af3db9a8d2337c6af632fff3194d196e534dfd47ba2dd69f515511be9f/rna_tools-3.23.post0.dev2-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-02-14T09:50:55,081 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/77/4c/d5eddc44da8b8f903179877d2e4fd21768acc11776d222be5030fd95d8c7/rna_tools-3.23.1-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-02-14T09:50:55,082 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/f7/04/4f4271af4cec16f9d14ad605bb6b934f210cfcf97af831e9e9de6b87c332/rna_tools-3.25-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-02-14T09:50:55,082 Found link https://files.pythonhosted.org/packages/a8/ed/7a195c3da380f259f526fa808c00ecb2b791636683aa082db6b12fd234cd/rna_tools-3.25.tar.gz (from https://pypi.org/simple/rna-tools/), version: 3.25 2026-02-14T09:50:55,083 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/e5/e2/8086e4c9ac1f7740f9466806d68780855fb1c58a5b90de975727a41b0fe0/rna_tools-3.25.post0.dev2-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-02-14T09:50:55,083 Found link https://files.pythonhosted.org/packages/fc/ca/ced6c944bcb743064c9a86ca07aa26129a14c5eb62596f797b3b2f20a0e2/rna_tools-3.25.post0.dev2.tar.gz (from https://pypi.org/simple/rna-tools/), version: 3.25.post0.dev2 2026-02-14T09:50:55,084 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/02/81/d232686bd8939c4a7019e89df66e8f44f9f2ac7e855dd21faa79cffee769/rna_tools-3.25.1-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-02-14T09:50:55,085 Found link https://files.pythonhosted.org/packages/cd/55/f0b5239e24d4bbd2af7863a8c64c4b795a4d3deba50400b4dc3e85ee584c/rna_tools-3.25.1.tar.gz (from https://pypi.org/simple/rna-tools/), version: 3.25.1 2026-02-14T09:50:55,085 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/d0/be/5fc036fc5c934a1d636d59590b2c953a85ed521695f44a853441e49585f3/rna_tools-3.25.1.post0.dev1-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-02-14T09:50:55,086 Found link https://files.pythonhosted.org/packages/00/11/0caec019f31c20c14566b265c0541d22cce934683957cde7b3a968cea7c3/rna_tools-3.25.1.post0.dev1.tar.gz (from https://pypi.org/simple/rna-tools/), version: 3.25.1.post0.dev1 2026-02-14T09:50:55,087 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/cd/19/cf3aba43c9cbce61b3b94cf293e0e38bac65c7872eb714548d84b44462cd/rna_tools-3.25.3-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-02-14T09:50:55,087 Found link https://files.pythonhosted.org/packages/8e/0e/dec7fcbaa1c11e52a2a4c9ade27386bd52043aa8e99989840b47a23774a2/rna_tools-3.25.3.tar.gz (from https://pypi.org/simple/rna-tools/), version: 3.25.3 2026-02-14T09:50:55,088 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/f9/31/9a2c82a0e5ea19b639f0b32c2ce4095b7614721edd39c296e9e01351abbe/rna_tools-3.25.4-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-02-14T09:50:55,089 Found link https://files.pythonhosted.org/packages/9b/83/23c17faaf88b230aef89f9267d550f1e1f733bc39420c0b2a99fdd266400/rna_tools-3.25.4.tar.gz (from https://pypi.org/simple/rna-tools/), version: 3.25.4 2026-02-14T09:50:55,089 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/24/e9/aac4dbd96a5ca08a80501fc729717cba92e19d00c13e84701a8c0a526004/rna_tools-3.26-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-02-14T09:50:55,090 Found link https://files.pythonhosted.org/packages/76/42/2335539142cacb855a106e5ae3d29a222e4d07f3f04f191d063e8a6752b8/rna_tools-3.26.tar.gz (from https://pypi.org/simple/rna-tools/), version: 3.26 2026-02-14T09:50:55,091 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/a2/a8/ccde277f837dfd1d8c2de1a90d739f94eaf458ac8c732afc273824cec49f/rna_tools-3.27.post0.dev3-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-02-14T09:50:55,091 Found link https://files.pythonhosted.org/packages/ff/02/8c7fed3b483197fded9567fdbcf783e9b8b0debcb26196a9638fe9eae58d/rna_tools-3.27.post0.dev3.tar.gz (from https://pypi.org/simple/rna-tools/), version: 3.27.post0.dev3 2026-02-14T09:50:55,092 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/ea/5b/ed6a000bc88c7024c124e3baeed34de23ab8bee8a7f95e0e85f005f309bf/rna_tools-3.27.1-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-02-14T09:50:55,093 Found link https://files.pythonhosted.org/packages/6a/58/281f7fc35a2cf9bc253fb704988e1e17baafe74ccb70b7b86d605b4c3c05/rna_tools-3.27.1.tar.gz (from https://pypi.org/simple/rna-tools/), version: 3.27.1 2026-02-14T09:50:55,093 Fetching project page and analyzing links: https://www.piwheels.org/simple/rna-tools/ 2026-02-14T09:50:55,094 Getting page https://www.piwheels.org/simple/rna-tools/ 2026-02-14T09:50:55,095 Found index url https://www.piwheels.org/simple 2026-02-14T09:50:55,248 Fetched page https://www.piwheels.org/simple/rna-tools/ as text/html 2026-02-14T09:50:55,252 Skipping link: No binaries permitted for rna-tools: https://www.piwheels.org/simple/rna-tools/rna_tools-3.25.3-py3-none-any.whl#sha256=165a43111ce2ee359c011e3c133fb52b70f9bb2fe74ac0c44ec118cafc40798d (from https://www.piwheels.org/simple/rna-tools/) 2026-02-14T09:50:55,252 Skipping link: No binaries permitted for rna-tools: https://www.piwheels.org/simple/rna-tools/rna_tools-3.25.1.post0.dev1-py3-none-any.whl#sha256=8703a1ac6cd850cf569abe5186cb3e5b63c34b869f74de3cbc7c5c5acc90e8b8 (from https://www.piwheels.org/simple/rna-tools/) 2026-02-14T09:50:55,253 Skipping link: No binaries permitted for rna-tools: https://www.piwheels.org/simple/rna-tools/rna_tools-3.25.1-py3-none-any.whl#sha256=31a0a058078b01e82235ae72c41ef99cdeae2bfdf03bc1faec83fc61666995d6 (from https://www.piwheels.org/simple/rna-tools/) 2026-02-14T09:50:55,254 Skipping link: No binaries permitted for rna-tools: https://www.piwheels.org/simple/rna-tools/rna_tools-3.25.post0.dev2-py3-none-any.whl#sha256=465af7e799388e527a2e2b0436144da336a2d02c006bf36c6ae8c2c8ee4bd120 (from https://www.piwheels.org/simple/rna-tools/) 2026-02-14T09:50:55,255 Skipping link: No binaries permitted for rna-tools: https://archive1.piwheels.org/simple/rna-tools/UNKNOWN-0%2Bunknown-py3-none-any.whl#sha256=b4214c42117c74da3961ab3bbaf3ce3e12ea386e102aecb92e8e47c607e842dc (from https://www.piwheels.org/simple/rna-tools/) 2026-02-14T09:50:55,255 Skipping link: No binaries permitted for rna-tools: https://archive1.piwheels.org/simple/rna-tools/rna_tools-3.1.4-py3-none-any.whl#sha256=1194ddbf480426f804e230eb711eb705a79f41efaf61679c966fd6b7fec65e17 (from https://www.piwheels.org/simple/rna-tools/) 2026-02-14T09:50:55,256 Skipping link: No binaries permitted for rna-tools: https://archive1.piwheels.org/simple/rna-tools/rna_tools-3.1.3-py3-none-any.whl#sha256=1d45105a5c8cc161b13b088a8e903b5d239701ca023758c17a591a0a0dfb86bb (from https://www.piwheels.org/simple/rna-tools/) 2026-02-14T09:50:55,256 Skipping link: No binaries permitted for rna-tools: https://archive1.piwheels.org/simple/rna-tools/rna_tools-3.1.2-py3-none-any.whl#sha256=7b92483d69eb10c0a144b20d4a546bc79db74de7e1340d8e204c697b1b7b5e20 (from https://www.piwheels.org/simple/rna-tools/) 2026-02-14T09:50:55,257 Skipping link: No binaries permitted for rna-tools: https://archive1.piwheels.org/simple/rna-tools/rna_tools-3.1.1-py3-none-any.whl#sha256=c9c26356bd9c8c2b8fef932367a9c0f2982e68353ec6b07872c6762d1654be50 (from https://www.piwheels.org/simple/rna-tools/) 2026-02-14T09:50:55,258 Skipping link: No binaries permitted for rna-tools: https://www.piwheels.org/simple/rna-tools/rna_tools-2.25.post0.dev1-py3-none-any.whl#sha256=069317b2d39ca3013977ae7584d23defb1894f6bb42522298a49962020a300f2 (from https://www.piwheels.org/simple/rna-tools/) 2026-02-14T09:50:55,259 Skipping link: not a file: https://www.piwheels.org/simple/rna-tools/ 2026-02-14T09:50:55,259 Skipping link: not a file: https://pypi.org/simple/rna-tools/ 2026-02-14T09:50:55,281 Given no hashes to check 1 links for project 'rna-tools': discarding no candidates 2026-02-14T09:50:55,300 Collecting rna-tools==3.27.1 2026-02-14T09:50:55,303 Created temporary directory: /tmp/pip-unpack-ek2gfat2 2026-02-14T09:50:55,531 Downloading rna_tools-3.27.1.tar.gz (57.5 MB) 2026-02-14T09:51:11,565 Added rna-tools==3.27.1 from https://files.pythonhosted.org/packages/6a/58/281f7fc35a2cf9bc253fb704988e1e17baafe74ccb70b7b86d605b4c3c05/rna_tools-3.27.1.tar.gz to build tracker '/tmp/pip-build-tracker-qir4119n' 2026-02-14T09:51:11,570 Created temporary directory: /tmp/pip-build-env-x5p4wdt_ 2026-02-14T09:51:11,576 Installing build dependencies: started 2026-02-14T09:51:11,577 Running command pip subprocess to install build dependencies 2026-02-14T09:51:12,724 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-02-14T09:51:13,360 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-02-14T09:51:13,384 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-02-14T09:51:15,170 Collecting setuptools<72 2026-02-14T09:51:15,364 Using cached https://www.piwheels.org/simple/setuptools/setuptools-71.1.0-py3-none-any.whl (2.3 MB) 2026-02-14T09:51:15,670 Collecting wheel 2026-02-14T09:51:15,687 Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB) 2026-02-14T09:51:15,788 Collecting versioneer 2026-02-14T09:51:15,803 Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.29-py3-none-any.whl (46 kB) 2026-02-14T09:51:15,995 Collecting packaging>=24.0 2026-02-14T09:51:16,012 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-02-14T09:51:19,037 Installing collected packages: versioneer, setuptools, packaging, wheel 2026-02-14T09:51:19,071 Creating /tmp/pip-build-env-x5p4wdt_/overlay/local/bin 2026-02-14T09:51:19,073 changing mode of /tmp/pip-build-env-x5p4wdt_/overlay/local/bin/versioneer to 755 2026-02-14T09:51:23,745 changing mode of /tmp/pip-build-env-x5p4wdt_/overlay/local/bin/wheel to 755 2026-02-14T09:51:23,779 Successfully installed packaging-26.0 setuptools-71.1.0 versioneer-0.29 wheel-0.46.3 2026-02-14T09:51:24,058 Installing build dependencies: finished with status 'done' 2026-02-14T09:51:24,064 Getting requirements to build wheel: started 2026-02-14T09:51:24,065 Running command Getting requirements to build wheel 2026-02-14T09:51:24,773 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:458: SetuptoolsDeprecationWarning: Invalid dash-separated options 2026-02-14T09:51:24,774 !! 2026-02-14T09:51:24,775 ******************************************************************************** 2026-02-14T09:51:24,776 Usage of dash-separated 'description-file' will not be supported in future 2026-02-14T09:51:24,776 versions. Please use the underscore name 'description_file' instead. 2026-02-14T09:51:24,777 This deprecation is overdue, please update your project and remove deprecated 2026-02-14T09:51:24,778 calls to avoid build errors in the future. 2026-02-14T09:51:24,779 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2026-02-14T09:51:24,780 ******************************************************************************** 2026-02-14T09:51:24,781 !! 2026-02-14T09:51:24,781 opt = self.warn_dash_deprecation(opt, section) 2026-02-14T09:51:24,837 Failed to load config from /tmp/pip-wheel-ahows7lm/rna-tools_f475ebc14f9a42a78ff866d43cba9dbd/pyproject.toml: 'tool' 2026-02-14T09:51:24,838 Try to load it from setup.cfg 2026-02-14T09:51:24,838 running egg_info 2026-02-14T09:51:24,844 writing rna_tools.egg-info/PKG-INFO 2026-02-14T09:51:24,849 writing dependency_links to rna_tools.egg-info/dependency_links.txt 2026-02-14T09:51:24,851 writing requirements to rna_tools.egg-info/requires.txt 2026-02-14T09:51:24,852 writing top-level names to rna_tools.egg-info/top_level.txt 2026-02-14T09:51:24,963 reading manifest file 'rna_tools.egg-info/SOURCES.txt' 2026-02-14T09:51:25,291 reading manifest template 'MANIFEST.in' 2026-02-14T09:51:26,050 adding license file 'LICENSE' 2026-02-14T09:51:26,136 writing manifest file 'rna_tools.egg-info/SOURCES.txt' 2026-02-14T09:51:26,159 Failed to load config from /tmp/pip-wheel-ahows7lm/rna-tools_f475ebc14f9a42a78ff866d43cba9dbd/pyproject.toml: 'tool' 2026-02-14T09:51:26,159 Try to load it from setup.cfg 2026-02-14T09:51:26,250 Getting requirements to build wheel: finished with status 'done' 2026-02-14T09:51:26,253 Created temporary directory: /tmp/pip-modern-metadata-awaskkw6 2026-02-14T09:51:26,255 Preparing metadata (pyproject.toml): started 2026-02-14T09:51:26,257 Running command Preparing metadata (pyproject.toml) 2026-02-14T09:51:26,921 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:458: SetuptoolsDeprecationWarning: Invalid dash-separated options 2026-02-14T09:51:26,922 !! 2026-02-14T09:51:26,923 ******************************************************************************** 2026-02-14T09:51:26,923 Usage of dash-separated 'description-file' will not be supported in future 2026-02-14T09:51:26,924 versions. Please use the underscore name 'description_file' instead. 2026-02-14T09:51:26,925 This deprecation is overdue, please update your project and remove deprecated 2026-02-14T09:51:26,926 calls to avoid build errors in the future. 2026-02-14T09:51:26,927 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2026-02-14T09:51:26,927 ******************************************************************************** 2026-02-14T09:51:26,929 !! 2026-02-14T09:51:26,929 opt = self.warn_dash_deprecation(opt, section) 2026-02-14T09:51:26,950 Failed to load config from /tmp/pip-wheel-ahows7lm/rna-tools_f475ebc14f9a42a78ff866d43cba9dbd/pyproject.toml: 'tool' 2026-02-14T09:51:26,951 Try to load it from setup.cfg 2026-02-14T09:51:26,951 running dist_info 2026-02-14T09:51:26,952 creating /tmp/pip-modern-metadata-awaskkw6/rna_tools.egg-info 2026-02-14T09:51:26,958 writing /tmp/pip-modern-metadata-awaskkw6/rna_tools.egg-info/PKG-INFO 2026-02-14T09:51:26,963 writing dependency_links to /tmp/pip-modern-metadata-awaskkw6/rna_tools.egg-info/dependency_links.txt 2026-02-14T09:51:26,965 writing requirements to /tmp/pip-modern-metadata-awaskkw6/rna_tools.egg-info/requires.txt 2026-02-14T09:51:26,966 writing top-level names to /tmp/pip-modern-metadata-awaskkw6/rna_tools.egg-info/top_level.txt 2026-02-14T09:51:26,968 writing manifest file '/tmp/pip-modern-metadata-awaskkw6/rna_tools.egg-info/SOURCES.txt' 2026-02-14T09:51:27,067 reading manifest file '/tmp/pip-modern-metadata-awaskkw6/rna_tools.egg-info/SOURCES.txt' 2026-02-14T09:51:27,069 reading manifest template 'MANIFEST.in' 2026-02-14T09:51:28,072 adding license file 'LICENSE' 2026-02-14T09:51:28,133 writing manifest file '/tmp/pip-modern-metadata-awaskkw6/rna_tools.egg-info/SOURCES.txt' 2026-02-14T09:51:28,154 Failed to load config from /tmp/pip-wheel-ahows7lm/rna-tools_f475ebc14f9a42a78ff866d43cba9dbd/pyproject.toml: 'tool' 2026-02-14T09:51:28,155 Try to load it from setup.cfg 2026-02-14T09:51:28,155 creating '/tmp/pip-modern-metadata-awaskkw6/rna_tools-3.27.1.dist-info' 2026-02-14T09:51:28,537 Preparing metadata (pyproject.toml): finished with status 'done' 2026-02-14T09:51:28,544 Source in /tmp/pip-wheel-ahows7lm/rna-tools_f475ebc14f9a42a78ff866d43cba9dbd has version 3.27.1, which satisfies requirement rna-tools==3.27.1 from https://files.pythonhosted.org/packages/6a/58/281f7fc35a2cf9bc253fb704988e1e17baafe74ccb70b7b86d605b4c3c05/rna_tools-3.27.1.tar.gz 2026-02-14T09:51:28,546 Removed rna-tools==3.27.1 from https://files.pythonhosted.org/packages/6a/58/281f7fc35a2cf9bc253fb704988e1e17baafe74ccb70b7b86d605b4c3c05/rna_tools-3.27.1.tar.gz from build tracker '/tmp/pip-build-tracker-qir4119n' 2026-02-14T09:51:28,553 Created temporary directory: /tmp/pip-unpack-yjrn5xbf 2026-02-14T09:51:28,554 Building wheels for collected packages: rna-tools 2026-02-14T09:51:28,559 Created temporary directory: /tmp/pip-wheel-vf1ul7ba 2026-02-14T09:51:28,560 Destination directory: /tmp/pip-wheel-vf1ul7ba 2026-02-14T09:51:28,562 Building wheel for rna-tools (pyproject.toml): started 2026-02-14T09:51:28,563 Running command Building wheel for rna-tools (pyproject.toml) 2026-02-14T09:51:30,457 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:458: SetuptoolsDeprecationWarning: Invalid dash-separated options 2026-02-14T09:51:30,458 !! 2026-02-14T09:51:30,459 ******************************************************************************** 2026-02-14T09:51:30,460 Usage of dash-separated 'description-file' will not be supported in future 2026-02-14T09:51:30,461 versions. Please use the underscore name 'description_file' instead. 2026-02-14T09:51:30,462 This deprecation is overdue, please update your project and remove deprecated 2026-02-14T09:51:30,463 calls to avoid build errors in the future. 2026-02-14T09:51:30,464 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2026-02-14T09:51:30,465 ******************************************************************************** 2026-02-14T09:51:30,466 !! 2026-02-14T09:51:30,467 opt = self.warn_dash_deprecation(opt, section) 2026-02-14T09:51:30,518 Failed to load config from /tmp/pip-wheel-ahows7lm/rna-tools_f475ebc14f9a42a78ff866d43cba9dbd/pyproject.toml: 'tool' 2026-02-14T09:51:30,519 Try to load it from setup.cfg 2026-02-14T09:51:30,519 running bdist_wheel 2026-02-14T09:51:30,541 running build 2026-02-14T09:51:30,542 running build_py 2026-02-14T09:51:30,548 Failed to load config from /tmp/pip-wheel-ahows7lm/rna-tools_f475ebc14f9a42a78ff866d43cba9dbd/pyproject.toml: 'tool' 2026-02-14T09:51:30,549 Try to load it from setup.cfg 2026-02-14T09:51:30,549 Failed to load config from /tmp/pip-wheel-ahows7lm/rna-tools_f475ebc14f9a42a78ff866d43cba9dbd/pyproject.toml: 'tool' 2026-02-14T09:51:30,550 Try to load it from setup.cfg 2026-02-14T09:51:30,550 creating build 2026-02-14T09:51:30,551 creating build/lib 2026-02-14T09:51:30,551 creating build/lib/rna_tools 2026-02-14T09:51:30,552 copying rna_tools/_version.py -> build/lib/rna_tools 2026-02-14T09:51:30,553 copying rna_tools/rna_cif2pdb.py -> build/lib/rna_tools 2026-02-14T09:51:30,555 copying rna_tools/rna_pdb_fetch.py -> build/lib/rna_tools 2026-02-14T09:51:30,557 copying rna_tools/__init__.py -> build/lib/rna_tools 2026-02-14T09:51:30,559 copying rna_tools/rna_pdb_tools.py -> build/lib/rna_tools 2026-02-14T09:51:30,562 copying rna_tools/rna_dot2ct.py -> build/lib/rna_tools 2026-02-14T09:51:30,564 copying rna_tools/rna_torsions.py -> build/lib/rna_tools 2026-02-14T09:51:30,566 copying rna_tools/rna_tools_config.py -> build/lib/rna_tools 2026-02-14T09:51:30,568 copying rna_tools/rna_pdb_seq.py -> build/lib/rna_tools 2026-02-14T09:51:30,570 copying rna_tools/rna_pdb_inspect.py -> build/lib/rna_tools 2026-02-14T09:51:30,572 copying rna_tools/rna_pdb_fetch_header.py -> build/lib/rna_tools 2026-02-14T09:51:30,574 copying rna_tools/SecondaryStructure.py -> build/lib/rna_tools 2026-02-14T09:51:30,576 copying rna_tools/rna_tools_lib.py -> build/lib/rna_tools 2026-02-14T09:51:30,579 copying rna_tools/rna_secondary_structure_prediction.py -> build/lib/rna_tools 2026-02-14T09:51:30,581 copying rna_tools/rna_tools_test_all.py -> build/lib/rna_tools 2026-02-14T09:51:30,583 copying rna_tools/rna_pdb_replace.py -> build/lib/rna_tools 2026-02-14T09:51:30,584 copying rna_tools/rna_simrnaweb_download_job.py -> build/lib/rna_tools 2026-02-14T09:51:30,586 copying rna_tools/Seq.py -> build/lib/rna_tools 2026-02-14T09:51:30,589 copying rna_tools/BlastPDB.py -> build/lib/rna_tools 2026-02-14T09:51:30,590 copying rna_tools/rna_calc_fenergy.py -> build/lib/rna_tools 2026-02-14T09:51:30,592 copying rna_tools/update_readme.py -> build/lib/rna_tools 2026-02-14T09:51:30,593 copying rna_tools/stats.py -> build/lib/rna_tools 2026-02-14T09:51:30,595 copying rna_tools/rna_standardize.py -> build/lib/rna_tools 2026-02-14T09:51:30,597 copying rna_tools/RfamSearch.py -> build/lib/rna_tools 2026-02-14T09:51:30,599 creating build/lib/tests 2026-02-14T09:51:30,600 copying tests/__init__.py -> build/lib/tests 2026-02-14T09:51:30,601 copying tests/test_module.py -> build/lib/tests 2026-02-14T09:51:30,603 creating build/lib/rna_tools/tools 2026-02-14T09:51:30,604 copying rna_tools/tools/__init__.py -> build/lib/rna_tools/tools 2026-02-14T09:51:30,606 creating build/lib/rna_tools/tools/rna_calc_rmsd 2026-02-14T09:51:30,607 copying rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd.py -> build/lib/rna_tools/tools/rna_calc_rmsd 2026-02-14T09:51:30,609 copying rna_tools/tools/rna_calc_rmsd/__init__.py -> build/lib/rna_tools/tools/rna_calc_rmsd 2026-02-14T09:51:30,611 copying rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_biopython.py -> build/lib/rna_tools/tools/rna_calc_rmsd 2026-02-14T09:51:30,614 copying rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_multi_targets.py -> build/lib/rna_tools/tools/rna_calc_rmsd 2026-02-14T09:51:30,615 copying rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_pymol.py -> build/lib/rna_tools/tools/rna_calc_rmsd 2026-02-14T09:51:30,618 copying rna_tools/tools/rna_calc_rmsd/rna_plot_alignment_bounds.py -> build/lib/rna_tools/tools/rna_calc_rmsd 2026-02-14T09:51:30,620 copying rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_all_vs_all.py -> build/lib/rna_tools/tools/rna_calc_rmsd 2026-02-14T09:51:30,623 creating build/lib/rna_tools/tools/rna_calc_evo_rmsd 2026-02-14T09:51:30,624 copying rna_tools/tools/rna_calc_evo_rmsd/rna_calc_evo_rmsd.py -> build/lib/rna_tools/tools/rna_calc_evo_rmsd 2026-02-14T09:51:30,626 copying rna_tools/tools/rna_calc_evo_rmsd/__init__.py -> build/lib/rna_tools/tools/rna_calc_evo_rmsd 2026-02-14T09:51:30,627 copying rna_tools/tools/rna_calc_evo_rmsd/RNAmodel.py -> build/lib/rna_tools/tools/rna_calc_evo_rmsd 2026-02-14T09:51:30,630 copying rna_tools/tools/rna_calc_evo_rmsd/RNAalignment.py -> build/lib/rna_tools/tools/rna_calc_evo_rmsd 2026-02-14T09:51:30,633 creating build/lib/rna_tools/tools/rna_alignment 2026-02-14T09:51:30,634 copying rna_tools/tools/rna_alignment/rna_align_coverage.py -> build/lib/rna_tools/tools/rna_alignment 2026-02-14T09:51:30,636 copying rna_tools/tools/rna_alignment/rna_align_fetch_seed.py -> build/lib/rna_tools/tools/rna_alignment 2026-02-14T09:51:30,637 copying rna_tools/tools/rna_alignment/rna_align_foldability.py -> build/lib/rna_tools/tools/rna_alignment 2026-02-14T09:51:30,640 copying rna_tools/tools/rna_alignment/__init__.py -> build/lib/rna_tools/tools/rna_alignment 2026-02-14T09:51:30,641 copying rna_tools/tools/rna_alignment/rna_alignment_r2r.py -> build/lib/rna_tools/tools/rna_alignment 2026-02-14T09:51:30,643 copying rna_tools/tools/rna_alignment/rna_align_fetch_cm.py -> build/lib/rna_tools/tools/rna_alignment 2026-02-14T09:51:30,645 copying rna_tools/tools/rna_alignment/rna_align_find_core.py -> build/lib/rna_tools/tools/rna_alignment 2026-02-14T09:51:30,646 copying rna_tools/tools/rna_alignment/rna_alignment.py -> build/lib/rna_tools/tools/rna_alignment 2026-02-14T09:51:30,649 copying rna_tools/tools/rna_alignment/rna_align_get_ss_from_stk.py -> build/lib/rna_tools/tools/rna_alignment 2026-02-14T09:51:30,651 copying rna_tools/tools/rna_alignment/rna_align_get_ss_from_fasta.py -> build/lib/rna_tools/tools/rna_alignment 2026-02-14T09:51:30,652 copying rna_tools/tools/rna_alignment/rna_align_sto2csv.py -> build/lib/rna_tools/tools/rna_alignment 2026-02-14T09:51:30,654 copying rna_tools/tools/rna_alignment/rna_align_distance_to_seq.py -> build/lib/rna_tools/tools/rna_alignment 2026-02-14T09:51:30,656 copying rna_tools/tools/rna_alignment/test_rna_alignment.py -> build/lib/rna_tools/tools/rna_alignment 2026-02-14T09:51:30,658 copying rna_tools/tools/rna_alignment/test.py -> build/lib/rna_tools/tools/rna_alignment 2026-02-14T09:51:30,659 copying rna_tools/tools/rna_alignment/random_assignment_of_nucleotides.py -> build/lib/rna_tools/tools/rna_alignment 2026-02-14T09:51:30,662 copying rna_tools/tools/rna_alignment/rna_align_seq_to_alignment.py -> build/lib/rna_tools/tools/rna_alignment 2026-02-14T09:51:30,663 copying rna_tools/tools/rna_alignment/rna_align_find_seq_in_alignment.py -> build/lib/rna_tools/tools/rna_alignment 2026-02-14T09:51:30,666 creating build/lib/rna_tools/tools/mini_moderna3 2026-02-14T09:51:30,666 copying rna_tools/tools/mini_moderna3/__init__.py -> build/lib/rna_tools/tools/mini_moderna3 2026-02-14T09:51:30,669 creating build/lib/rna_tools/tools/pdbs_measure_atom_dists 2026-02-14T09:51:30,669 copying rna_tools/tools/pdbs_measure_atom_dists/__init__.py -> build/lib/rna_tools/tools/pdbs_measure_atom_dists 2026-02-14T09:51:30,671 copying rna_tools/tools/pdbs_measure_atom_dists/pdbs_measure_atom_dists.py -> build/lib/rna_tools/tools/pdbs_measure_atom_dists 2026-02-14T09:51:30,674 creating build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments 2026-02-14T09:51:30,674 copying rna_tools/tools/rna_pdb_merge_structure_with_fragments/rna_pdb_merge_structure_with_fragments.py -> build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments 2026-02-14T09:51:30,677 copying rna_tools/tools/rna_pdb_merge_structure_with_fragments/__init__.py -> build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments 2026-02-14T09:51:30,679 creating build/lib/rna_tools/tools/misc 2026-02-14T09:51:30,680 copying rna_tools/tools/misc/rna_test_cuda.py -> build/lib/rna_tools/tools/misc 2026-02-14T09:51:30,682 copying rna_tools/tools/misc/translate.py -> build/lib/rna_tools/tools/misc 2026-02-14T09:51:30,684 copying rna_tools/tools/misc/__init__.py -> build/lib/rna_tools/tools/misc 2026-02-14T09:51:30,685 copying rna_tools/tools/misc/rna_dict2fasta.py -> build/lib/rna_tools/tools/misc 2026-02-14T09:51:30,687 copying rna_tools/tools/misc/rna_tools_demo.py -> build/lib/rna_tools/tools/misc 2026-02-14T09:51:30,689 copying rna_tools/tools/misc/rna_tools_which.py -> build/lib/rna_tools/tools/misc 2026-02-14T09:51:30,691 copying rna_tools/tools/misc/rna_remote_run.py -> build/lib/rna_tools/tools/misc 2026-02-14T09:51:30,693 copying rna_tools/tools/misc/rna_topdb.py -> build/lib/rna_tools/tools/misc 2026-02-14T09:51:30,695 copying rna_tools/tools/misc/reverse.py -> build/lib/rna_tools/tools/misc 2026-02-14T09:51:30,696 copying rna_tools/tools/misc/rna_add_chain.py -> build/lib/rna_tools/tools/misc 2026-02-14T09:51:30,698 copying rna_tools/tools/misc/rna_ok_mail.py -> build/lib/rna_tools/tools/misc 2026-02-14T09:51:30,700 creating build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor 2026-02-14T09:51:30,701 copying rna_tools/tools/rna_pdb_edit_occupancy_bfactor/__init__.py -> build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor 2026-02-14T09:51:30,703 copying rna_tools/tools/rna_pdb_edit_occupancy_bfactor/rna_pdb_edit_occupancy_bfactor.py -> build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor 2026-02-14T09:51:30,706 creating build/lib/rna_tools/tools/ClashCalc 2026-02-14T09:51:30,707 copying rna_tools/tools/ClashCalc/__init__.py -> build/lib/rna_tools/tools/ClashCalc 2026-02-14T09:51:30,708 copying rna_tools/tools/ClashCalc/ClashCalc.py -> build/lib/rna_tools/tools/ClashCalc 2026-02-14T09:51:30,710 creating build/lib/rna_tools/tools/rna_x3dna 2026-02-14T09:51:30,711 copying rna_tools/tools/rna_x3dna/rna_x3dna.py -> build/lib/rna_tools/tools/rna_x3dna 2026-02-14T09:51:30,713 copying rna_tools/tools/rna_x3dna/__init__.py -> build/lib/rna_tools/tools/rna_x3dna 2026-02-14T09:51:30,716 creating build/lib/rna_tools/tools/webserver-engine 2026-02-14T09:51:30,717 copying rna_tools/tools/webserver-engine/__init__.py -> build/lib/rna_tools/tools/webserver-engine 2026-02-14T09:51:30,718 copying rna_tools/tools/webserver-engine/sendmail.py -> build/lib/rna_tools/tools/webserver-engine 2026-02-14T09:51:30,720 copying rna_tools/tools/webserver-engine/manage.py -> build/lib/rna_tools/tools/webserver-engine 2026-02-14T09:51:30,721 copying rna_tools/tools/webserver-engine/wsgi.py -> build/lib/rna_tools/tools/webserver-engine 2026-02-14T09:51:30,723 copying rna_tools/tools/webserver-engine/cleanup.py -> build/lib/rna_tools/tools/webserver-engine 2026-02-14T09:51:30,725 copying rna_tools/tools/webserver-engine/checker.py -> build/lib/rna_tools/tools/webserver-engine 2026-02-14T09:51:30,727 copying rna_tools/tools/webserver-engine/daemon.py -> build/lib/rna_tools/tools/webserver-engine 2026-02-14T09:51:30,730 creating build/lib/rna_tools/tools/simrna_trajectory 2026-02-14T09:51:30,731 copying rna_tools/tools/simrna_trajectory/rna_simrna_lowest.py -> build/lib/rna_tools/tools/simrna_trajectory 2026-02-14T09:51:30,733 copying rna_tools/tools/simrna_trajectory/rna_simrna_energy_plot.py -> build/lib/rna_tools/tools/simrna_trajectory 2026-02-14T09:51:30,734 copying rna_tools/tools/simrna_trajectory/__init__.py -> build/lib/rna_tools/tools/simrna_trajectory 2026-02-14T09:51:30,736 copying rna_tools/tools/simrna_trajectory/rna_simrna_cluster.py -> build/lib/rna_tools/tools/simrna_trajectory 2026-02-14T09:51:30,737 copying rna_tools/tools/simrna_trajectory/test_rmsd.py -> build/lib/rna_tools/tools/simrna_trajectory 2026-02-14T09:51:30,739 copying rna_tools/tools/simrna_trajectory/rna_simrna_extract.py -> build/lib/rna_tools/tools/simrna_trajectory 2026-02-14T09:51:30,741 copying rna_tools/tools/simrna_trajectory/simrna_trajectory.py -> build/lib/rna_tools/tools/simrna_trajectory 2026-02-14T09:51:30,743 copying rna_tools/tools/simrna_trajectory/rna_simrna_subset.py -> build/lib/rna_tools/tools/simrna_trajectory 2026-02-14T09:51:30,745 copying rna_tools/tools/simrna_trajectory/test_rna_simrna.py -> build/lib/rna_tools/tools/simrna_trajectory 2026-02-14T09:51:30,747 creating build/lib/rna_tools/tools/renum_pdb_to_aln 2026-02-14T09:51:30,748 copying rna_tools/tools/renum_pdb_to_aln/__init__.py -> build/lib/rna_tools/tools/renum_pdb_to_aln 2026-02-14T09:51:30,750 copying rna_tools/tools/renum_pdb_to_aln/renum_pdb_to_aln.py -> build/lib/rna_tools/tools/renum_pdb_to_aln 2026-02-14T09:51:30,752 creating build/lib/rna_tools/tools/rna_calc_inf 2026-02-14T09:51:30,753 copying rna_tools/tools/rna_calc_inf/__init__.py -> build/lib/rna_tools/tools/rna_calc_inf 2026-02-14T09:51:30,754 copying rna_tools/tools/rna_calc_inf/rna_calc_inf.py -> build/lib/rna_tools/tools/rna_calc_inf 2026-02-14T09:51:30,757 copying rna_tools/tools/rna_calc_inf/rna_calc_dinf.py -> build/lib/rna_tools/tools/rna_calc_inf 2026-02-14T09:51:30,759 creating build/lib/rna_tools/tools/rna_refinement 2026-02-14T09:51:30,760 copying rna_tools/tools/rna_refinement/rna_refinement.py -> build/lib/rna_tools/tools/rna_refinement 2026-02-14T09:51:30,763 copying rna_tools/tools/rna_refinement/__init__.py -> build/lib/rna_tools/tools/rna_refinement 2026-02-14T09:51:30,765 creating build/lib/rna_tools/tools/cluster_load 2026-02-14T09:51:30,766 copying rna_tools/tools/cluster_load/__init__.py -> build/lib/rna_tools/tools/cluster_load 2026-02-14T09:51:30,767 copying rna_tools/tools/cluster_load/cluster_load.py -> build/lib/rna_tools/tools/cluster_load 2026-02-14T09:51:30,769 copying rna_tools/tools/cluster_load/cluster_mini_free.py -> build/lib/rna_tools/tools/cluster_load 2026-02-14T09:51:30,771 creating build/lib/rna_tools/tools/rna_convert_pseudoknot_formats 2026-02-14T09:51:30,772 copying rna_tools/tools/rna_convert_pseudoknot_formats/__init__.py -> build/lib/rna_tools/tools/rna_convert_pseudoknot_formats 2026-02-14T09:51:30,774 copying rna_tools/tools/rna_convert_pseudoknot_formats/rna_pk_simrna_to_one_line.py -> build/lib/rna_tools/tools/rna_convert_pseudoknot_formats 2026-02-14T09:51:30,775 copying rna_tools/tools/rna_convert_pseudoknot_formats/rna_ss_pk_to_simrna.py -> build/lib/rna_tools/tools/rna_convert_pseudoknot_formats 2026-02-14T09:51:30,778 creating build/lib/rna_tools/tools/rna_filter 2026-02-14T09:51:30,779 copying rna_tools/tools/rna_filter/rna_pairs2rfilter.py -> build/lib/rna_tools/tools/rna_filter 2026-02-14T09:51:30,780 copying rna_tools/tools/rna_filter/__init__.py -> build/lib/rna_tools/tools/rna_filter 2026-02-14T09:51:30,782 copying rna_tools/tools/rna_filter/rna_ss_get_bps.py -> build/lib/rna_tools/tools/rna_filter 2026-02-14T09:51:30,783 copying rna_tools/tools/rna_filter/simrna_get_restraints.py -> build/lib/rna_tools/tools/rna_filter 2026-02-14T09:51:30,785 copying rna_tools/tools/rna_filter/rna_pairs2SimRNArestrs.py -> build/lib/rna_tools/tools/rna_filter 2026-02-14T09:51:30,787 copying rna_tools/tools/rna_filter/rna_get_dists.py -> build/lib/rna_tools/tools/rna_filter 2026-02-14T09:51:30,789 copying rna_tools/tools/rna_filter/rna_dca_select_interactions.py -> build/lib/rna_tools/tools/rna_filter 2026-02-14T09:51:30,791 copying rna_tools/tools/rna_filter/test_rna_filter.py -> build/lib/rna_tools/tools/rna_filter 2026-02-14T09:51:30,792 copying rna_tools/tools/rna_filter/rna_dca_mapping.py -> build/lib/rna_tools/tools/rna_filter 2026-02-14T09:51:30,795 copying rna_tools/tools/rna_filter/rna_get_distances.py -> build/lib/rna_tools/tools/rna_filter 2026-02-14T09:51:30,797 copying rna_tools/tools/rna_filter/rna_restrs2SimRNArestrs.py -> build/lib/rna_tools/tools/rna_filter 2026-02-14T09:51:30,799 copying rna_tools/tools/rna_filter/rna_ec2x.py -> build/lib/rna_tools/tools/rna_filter 2026-02-14T09:51:30,800 copying rna_tools/tools/rna_filter/rna_filter.py -> build/lib/rna_tools/tools/rna_filter 2026-02-14T09:51:30,803 copying rna_tools/tools/rna_filter/rna_pairs_diff.py -> build/lib/rna_tools/tools/rna_filter 2026-02-14T09:51:30,804 copying rna_tools/tools/rna_filter/pymol_dists.py -> build/lib/rna_tools/tools/rna_filter 2026-02-14T09:51:30,806 copying rna_tools/tools/rna_filter/rna_csv2pairs.py -> build/lib/rna_tools/tools/rna_filter 2026-02-14T09:51:30,807 copying rna_tools/tools/rna_filter/rna_restrs2mqapRNA.py -> build/lib/rna_tools/tools/rna_filter 2026-02-14T09:51:30,810 creating build/lib/rna_tools/tools/rna_calc_rmsd_trafl 2026-02-14T09:51:30,811 copying rna_tools/tools/rna_calc_rmsd_trafl/__init__.py -> build/lib/rna_tools/tools/rna_calc_rmsd_trafl 2026-02-14T09:51:30,812 copying rna_tools/tools/rna_calc_rmsd_trafl/rna_calc_rmsd_trafl.py -> build/lib/rna_tools/tools/rna_calc_rmsd_trafl 2026-02-14T09:51:30,815 copying rna_tools/tools/rna_calc_rmsd_trafl/rna_cal_rmsd_trafl_plot.py -> build/lib/rna_tools/tools/rna_calc_rmsd_trafl 2026-02-14T09:51:30,817 creating build/lib/rna_tools/tools/plotting 2026-02-14T09:51:30,818 copying rna_tools/tools/plotting/rna_plot_density.py -> build/lib/rna_tools/tools/plotting 2026-02-14T09:51:30,820 copying rna_tools/tools/plotting/rna_plot_dendogram.py -> build/lib/rna_tools/tools/plotting 2026-02-14T09:51:30,822 copying rna_tools/tools/plotting/__init__.py -> build/lib/rna_tools/tools/plotting 2026-02-14T09:51:30,824 copying rna_tools/tools/plotting/rna_plot_boxplotlike.py -> build/lib/rna_tools/tools/plotting 2026-02-14T09:51:30,826 copying rna_tools/tools/plotting/rna_plot_heatmap.py -> build/lib/rna_tools/tools/plotting 2026-02-14T09:51:30,827 copying rna_tools/tools/plotting/rna_plot_hist.py -> build/lib/rna_tools/tools/plotting 2026-02-14T09:51:30,830 creating build/lib/rna_tools/tools/md 2026-02-14T09:51:30,831 copying rna_tools/tools/md/__init__.py -> build/lib/rna_tools/tools/md 2026-02-14T09:51:30,832 copying rna_tools/tools/md/rna_traj_range.py -> build/lib/rna_tools/tools/md 2026-02-14T09:51:30,834 copying rna_tools/tools/md/rna_gromacs_ready.py -> build/lib/rna_tools/tools/md 2026-02-14T09:51:30,836 copying rna_tools/tools/md/rna_traj_n.py -> build/lib/rna_tools/tools/md 2026-02-14T09:51:30,838 copying rna_tools/tools/md/rna_traj_nohetm.py -> build/lib/rna_tools/tools/md 2026-02-14T09:51:30,840 copying rna_tools/tools/md/rna_md.py -> build/lib/rna_tools/tools/md 2026-02-14T09:51:30,843 copying rna_tools/tools/md/rnakb_utils.py -> build/lib/rna_tools/tools/md 2026-02-14T09:51:30,847 copying rna_tools/tools/md/rna_minimize.py -> build/lib/rna_tools/tools/md 2026-02-14T09:51:30,851 copying rna_tools/tools/md/test.py -> build/lib/rna_tools/tools/md 2026-02-14T09:51:30,855 copying rna_tools/tools/md/rna_get_energy.py -> build/lib/rna_tools/tools/md 2026-02-14T09:51:30,858 creating build/lib/rna_tools/tools/clarna_app 2026-02-14T09:51:30,858 copying rna_tools/tools/clarna_app/__init__.py -> build/lib/rna_tools/tools/clarna_app 2026-02-14T09:51:30,860 copying rna_tools/tools/clarna_app/test.py -> build/lib/rna_tools/tools/clarna_app 2026-02-14T09:51:30,862 copying rna_tools/tools/clarna_app/rna_clarna2graph.py -> build/lib/rna_tools/tools/clarna_app 2026-02-14T09:51:30,863 copying rna_tools/tools/clarna_app/rna_clarna_app.py -> build/lib/rna_tools/tools/clarna_app 2026-02-14T09:51:30,866 creating build/lib/rna_tools/tools/clarna_play 2026-02-14T09:51:30,867 copying rna_tools/tools/clarna_play/__init__.py -> build/lib/rna_tools/tools/clarna_play 2026-02-14T09:51:30,869 copying rna_tools/tools/clarna_play/PDBSeq.py -> build/lib/rna_tools/tools/clarna_play 2026-02-14T09:51:30,871 copying rna_tools/tools/clarna_play/rna_clarna_compare.py -> build/lib/rna_tools/tools/clarna_play 2026-02-14T09:51:30,874 copying rna_tools/tools/clarna_play/rna_clarna_run.py -> build/lib/rna_tools/tools/clarna_play 2026-02-14T09:51:30,877 creating build/lib/rna_tools/tools/clanstix 2026-02-14T09:51:30,878 copying rna_tools/tools/clanstix/__init__.py -> build/lib/rna_tools/tools/clanstix 2026-02-14T09:51:30,880 copying rna_tools/tools/clanstix/rna_clanstix.py -> build/lib/rna_tools/tools/clanstix 2026-02-14T09:51:30,883 creating build/lib/rna_tools/tools/rna_prediction_significance 2026-02-14T09:51:30,884 copying rna_tools/tools/rna_prediction_significance/__init__.py -> build/lib/rna_tools/tools/rna_prediction_significance 2026-02-14T09:51:30,886 copying rna_tools/tools/rna_prediction_significance/rna_prediction_significance.py -> build/lib/rna_tools/tools/rna_prediction_significance 2026-02-14T09:51:30,888 creating build/lib/rna_tools/tools/extra_functions 2026-02-14T09:51:30,889 copying rna_tools/tools/extra_functions/__init__.py -> build/lib/rna_tools/tools/extra_functions 2026-02-14T09:51:30,890 copying rna_tools/tools/extra_functions/gen_numbering.py -> build/lib/rna_tools/tools/extra_functions 2026-02-14T09:51:30,892 copying rna_tools/tools/extra_functions/select_fragment.py -> build/lib/rna_tools/tools/extra_functions 2026-02-14T09:51:30,894 creating build/lib/rna_tools/tools/mq 2026-02-14T09:51:30,895 copying rna_tools/tools/mq/__init__.py -> build/lib/rna_tools/tools/mq 2026-02-14T09:51:30,897 copying rna_tools/tools/mq/rna_mq_wx_collect.py -> build/lib/rna_tools/tools/mq 2026-02-14T09:51:30,898 copying rna_tools/tools/mq/rna_mq_plot.py -> build/lib/rna_tools/tools/mq 2026-02-14T09:51:30,901 copying rna_tools/tools/mq/rna_mq_score.py -> build/lib/rna_tools/tools/mq 2026-02-14T09:51:30,903 copying rna_tools/tools/mq/rna_mq_collect.py -> build/lib/rna_tools/tools/mq 2026-02-14T09:51:30,905 copying rna_tools/tools/mq/rna_mq_exp.py -> build/lib/rna_tools/tools/mq 2026-02-14T09:51:30,907 copying rna_tools/tools/mq/rna_mq_collect_tqdm.py -> build/lib/rna_tools/tools/mq 2026-02-14T09:51:30,910 creating build/lib/rna_tools/tools/rna_sali2dotbracket 2026-02-14T09:51:30,911 copying rna_tools/tools/rna_sali2dotbracket/__init__.py -> build/lib/rna_tools/tools/rna_sali2dotbracket 2026-02-14T09:51:30,912 copying rna_tools/tools/rna_sali2dotbracket/rna_sali2dotbracket.py -> build/lib/rna_tools/tools/rna_sali2dotbracket 2026-02-14T09:51:30,915 creating build/lib/rna_tools/tools/rna_rosetta 2026-02-14T09:51:30,915 copying rna_tools/tools/rna_rosetta/rna_rosetta_extract.py -> build/lib/rna_tools/tools/rna_rosetta 2026-02-14T09:51:30,917 copying rna_tools/tools/rna_rosetta/rna_rosetta_min.py -> build/lib/rna_tools/tools/rna_rosetta 2026-02-14T09:51:30,919 copying rna_tools/tools/rna_rosetta/__init__.py -> build/lib/rna_tools/tools/rna_rosetta 2026-02-14T09:51:30,920 copying rna_tools/tools/rna_rosetta/rna_rosetta_silent_random.py -> build/lib/rna_tools/tools/rna_rosetta 2026-02-14T09:51:30,922 copying rna_tools/tools/rna_rosetta/rna_rosetta_head.py -> build/lib/rna_tools/tools/rna_rosetta 2026-02-14T09:51:30,924 copying rna_tools/tools/rna_rosetta/rna_rosetta_extract_lowscore_decoys.py -> build/lib/rna_tools/tools/rna_rosetta 2026-02-14T09:51:30,926 copying rna_tools/tools/rna_rosetta/rna_rosetta_easy_cat.py -> build/lib/rna_tools/tools/rna_rosetta 2026-02-14T09:51:30,927 copying rna_tools/tools/rna_rosetta/rna_rosetta_check_progress.py -> build/lib/rna_tools/tools/rna_rosetta 2026-02-14T09:51:30,929 copying rna_tools/tools/rna_rosetta/rna_rosetta_get_score.py -> build/lib/rna_tools/tools/rna_rosetta 2026-02-14T09:51:30,931 copying rna_tools/tools/rna_rosetta/rna_rosetta_silent_file_sort_and_select.py -> build/lib/rna_tools/tools/rna_rosetta 2026-02-14T09:51:30,933 copying rna_tools/tools/rna_rosetta/test.py -> build/lib/rna_tools/tools/rna_rosetta 2026-02-14T09:51:30,934 copying rna_tools/tools/rna_rosetta/rna_rosetta_run.py -> build/lib/rna_tools/tools/rna_rosetta 2026-02-14T09:51:30,937 copying rna_tools/tools/rna_rosetta/rna_rosetta_silent_split.py -> build/lib/rna_tools/tools/rna_rosetta 2026-02-14T09:51:30,940 copying rna_tools/tools/rna_rosetta/rna_rosetta_n.py -> build/lib/rna_tools/tools/rna_rosetta 2026-02-14T09:51:30,944 copying rna_tools/tools/rna_rosetta/rna_rosetta_cluster.py -> build/lib/rna_tools/tools/rna_rosetta 2026-02-14T09:51:30,947 creating build/lib/rna_tools/tools/PyMOL4RNA 2026-02-14T09:51:30,948 copying rna_tools/tools/PyMOL4RNA/PyMOL4RNA.py -> build/lib/rna_tools/tools/PyMOL4RNA 2026-02-14T09:51:30,951 copying rna_tools/tools/PyMOL4RNA/rnapuzzles.py -> build/lib/rna_tools/tools/PyMOL4RNA 2026-02-14T09:51:30,953 copying rna_tools/tools/PyMOL4RNA/__init__.py -> build/lib/rna_tools/tools/PyMOL4RNA 2026-02-14T09:51:30,954 copying rna_tools/tools/PyMOL4RNA/code_for_color_spl.py -> build/lib/rna_tools/tools/PyMOL4RNA 2026-02-14T09:51:30,957 copying rna_tools/tools/PyMOL4RNA/PyMOL4Spliceosome.py -> build/lib/rna_tools/tools/PyMOL4RNA 2026-02-14T09:51:30,959 copying rna_tools/tools/PyMOL4RNA/external_flatten_object.py -> build/lib/rna_tools/tools/PyMOL4RNA 2026-02-14T09:51:30,961 copying rna_tools/tools/PyMOL4RNA/code_for_spl.py -> build/lib/rna_tools/tools/PyMOL4RNA 2026-02-14T09:51:30,964 copying rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL.py -> build/lib/rna_tools/tools/PyMOL4RNA 2026-02-14T09:51:30,966 copying rna_tools/tools/PyMOL4RNA/rna_draw_edges.py -> build/lib/rna_tools/tools/PyMOL4RNA 2026-02-14T09:51:30,968 creating build/lib/rna_tools/tools/rna_bp 2026-02-14T09:51:30,969 copying rna_tools/tools/rna_bp/__init__.py -> build/lib/rna_tools/tools/rna_bp 2026-02-14T09:51:30,971 copying rna_tools/tools/rna_bp/base_pair.py -> build/lib/rna_tools/tools/rna_bp 2026-02-14T09:51:30,973 creating build/lib/rna_tools/tools/rna_helix_vis 2026-02-14T09:51:30,974 copying rna_tools/tools/rna_helix_vis/rna_helix_vis.py -> build/lib/rna_tools/tools/rna_helix_vis 2026-02-14T09:51:30,976 copying rna_tools/tools/rna_helix_vis/__init__.py -> build/lib/rna_tools/tools/rna_helix_vis 2026-02-14T09:51:30,978 creating build/lib/rna_tools/tools/pdb_formatix 2026-02-14T09:51:30,979 copying rna_tools/tools/pdb_formatix/test-quick-and-dirty.py -> build/lib/rna_tools/tools/pdb_formatix 2026-02-14T09:51:30,981 copying rna_tools/tools/pdb_formatix/__init__.py -> build/lib/rna_tools/tools/pdb_formatix 2026-02-14T09:51:30,982 copying rna_tools/tools/pdb_formatix/rebuilder.py -> build/lib/rna_tools/tools/pdb_formatix 2026-02-14T09:51:30,984 copying rna_tools/tools/pdb_formatix/PDBFile.py -> build/lib/rna_tools/tools/pdb_formatix 2026-02-14T09:51:30,986 copying rna_tools/tools/pdb_formatix/SingleLineUtils.py -> build/lib/rna_tools/tools/pdb_formatix 2026-02-14T09:51:30,988 copying rna_tools/tools/pdb_formatix/RosettaUtils.py -> build/lib/rna_tools/tools/pdb_formatix 2026-02-14T09:51:30,990 creating build/lib/rna_tools/tools/pymol_drawing 2026-02-14T09:51:30,991 copying rna_tools/tools/pymol_drawing/__init__.py -> build/lib/rna_tools/tools/pymol_drawing 2026-02-14T09:51:30,993 copying rna_tools/tools/pymol_drawing/pymol_drawing.py -> build/lib/rna_tools/tools/pymol_drawing 2026-02-14T09:51:30,995 creating build/lib/rna_tools/tools/diffpdb 2026-02-14T09:51:30,996 copying rna_tools/tools/diffpdb/__init__.py -> build/lib/rna_tools/tools/diffpdb 2026-02-14T09:51:30,998 copying rna_tools/tools/diffpdb/diffpdb.py -> build/lib/rna_tools/tools/diffpdb 2026-02-14T09:51:31,000 creating build/lib/rna_tools/tools/rna_calc_rmsd/lib 2026-02-14T09:51:31,001 copying rna_tools/tools/rna_calc_rmsd/lib/__init__.py -> build/lib/rna_tools/tools/rna_calc_rmsd/lib 2026-02-14T09:51:31,003 creating build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2026-02-14T09:51:31,004 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/__init__.py -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2026-02-14T09:51:31,005 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/calculate_rmsd.py -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2026-02-14T09:51:31,008 creating build/lib/rna_tools/tools/rna_alignment/utils 2026-02-14T09:51:31,009 copying rna_tools/tools/rna_alignment/utils/mfa-get-seq-for-species.py -> build/lib/rna_tools/tools/rna_alignment/utils 2026-02-14T09:51:31,011 copying rna_tools/tools/rna_alignment/utils/__init__.py -> build/lib/rna_tools/tools/rna_alignment/utils 2026-02-14T09:51:31,012 copying rna_tools/tools/rna_alignment/utils/rna_alignment_r2r.py -> build/lib/rna_tools/tools/rna_alignment/utils 2026-02-14T09:51:31,014 copying rna_tools/tools/rna_alignment/utils/rna_align_strip_stk.py -> build/lib/rna_tools/tools/rna_alignment/utils 2026-02-14T09:51:31,016 copying rna_tools/tools/rna_alignment/utils/rna_alignment_process_id.py -> build/lib/rna_tools/tools/rna_alignment/utils 2026-02-14T09:51:31,017 copying rna_tools/tools/rna_alignment/utils/rna_alignment_merge_by_species.py -> build/lib/rna_tools/tools/rna_alignment/utils 2026-02-14T09:51:31,019 copying rna_tools/tools/rna_alignment/utils/rna_alignment_get_species.py -> build/lib/rna_tools/tools/rna_alignment/utils 2026-02-14T09:51:31,022 copying rna_tools/tools/rna_alignment/utils/rna_alignment_calc_energy.py -> build/lib/rna_tools/tools/rna_alignment/utils 2026-02-14T09:51:31,024 copying rna_tools/tools/rna_alignment/utils/rna_alignment_sto_remove_uniq_ids.py -> build/lib/rna_tools/tools/rna_alignment/utils 2026-02-14T09:51:31,027 creating build/lib/rna_tools/tools/mini_moderna3/moderna 2026-02-14T09:51:31,028 copying rna_tools/tools/mini_moderna3/moderna/Renumerator.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-02-14T09:51:31,030 copying rna_tools/tools/mini_moderna3/moderna/_version.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-02-14T09:51:31,032 copying rna_tools/tools/mini_moderna3/moderna/Helix.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-02-14T09:51:31,035 copying rna_tools/tools/mini_moderna3/moderna/FragmentInsertion.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-02-14T09:51:31,036 copying rna_tools/tools/mini_moderna3/moderna/__init__.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-02-14T09:51:31,038 copying rna_tools/tools/mini_moderna3/moderna/Constants.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-02-14T09:51:31,040 copying rna_tools/tools/mini_moderna3/moderna/PdbConverter.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-02-14T09:51:31,042 copying rna_tools/tools/mini_moderna3/moderna/ModelingRecipe.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-02-14T09:51:31,044 copying rna_tools/tools/mini_moderna3/moderna/ModernaStructure.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-02-14T09:51:31,046 copying rna_tools/tools/mini_moderna3/moderna/RNAResidue.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-02-14T09:51:31,048 copying rna_tools/tools/mini_moderna3/moderna/Renumerator_new.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-02-14T09:51:31,050 copying rna_tools/tools/mini_moderna3/moderna/ModernaFragment.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-02-14T09:51:31,053 copying rna_tools/tools/mini_moderna3/moderna/Template.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-02-14T09:51:31,054 copying rna_tools/tools/mini_moderna3/moderna/moderna.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-02-14T09:51:31,056 copying rna_tools/tools/mini_moderna3/moderna/commands.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-02-14T09:51:31,059 copying rna_tools/tools/mini_moderna3/moderna/CheckPdb.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-02-14T09:51:31,061 copying rna_tools/tools/mini_moderna3/moderna/ModernaSuperimposer.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-02-14T09:51:31,063 copying rna_tools/tools/mini_moderna3/moderna/RNAChain.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-02-14T09:51:31,065 copying rna_tools/tools/mini_moderna3/moderna/RNAModel.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-02-14T09:51:31,068 creating build/lib/rna_tools/tools/mini_moderna3/moderna/modifications 2026-02-14T09:51:31,069 copying rna_tools/tools/mini_moderna3/moderna/modifications/__init__.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/modifications 2026-02-14T09:51:31,071 copying rna_tools/tools/mini_moderna3/moderna/modifications/ModificationAdder.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/modifications 2026-02-14T09:51:31,073 copying rna_tools/tools/mini_moderna3/moderna/modifications/BaseExchanger.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/modifications 2026-02-14T09:51:31,075 copying rna_tools/tools/mini_moderna3/moderna/modifications/ModificationRemover.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/modifications 2026-02-14T09:51:31,077 copying rna_tools/tools/mini_moderna3/moderna/modifications/ModifyResidue.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/modifications 2026-02-14T09:51:31,078 copying rna_tools/tools/mini_moderna3/moderna/modifications/ResidueEditor.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/modifications 2026-02-14T09:51:31,081 creating build/lib/rna_tools/tools/mini_moderna3/moderna/sequence 2026-02-14T09:51:31,082 copying rna_tools/tools/mini_moderna3/moderna/sequence/__init__.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/sequence 2026-02-14T09:51:31,083 copying rna_tools/tools/mini_moderna3/moderna/sequence/commands.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/sequence 2026-02-14T09:51:31,085 copying rna_tools/tools/mini_moderna3/moderna/sequence/ModernaAlphabet.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/sequence 2026-02-14T09:51:31,087 copying rna_tools/tools/mini_moderna3/moderna/sequence/AlignmentMatcher.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/sequence 2026-02-14T09:51:31,089 copying rna_tools/tools/mini_moderna3/moderna/sequence/ModernaSequence.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/sequence 2026-02-14T09:51:31,091 copying rna_tools/tools/mini_moderna3/moderna/sequence/RNAAlignment.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/sequence 2026-02-14T09:51:31,094 creating build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library 2026-02-14T09:51:31,095 copying rna_tools/tools/mini_moderna3/moderna/fragment_library/__init__.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library 2026-02-14T09:51:31,096 copying rna_tools/tools/mini_moderna3/moderna/fragment_library/SearchLIR.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library 2026-02-14T09:51:31,099 copying rna_tools/tools/mini_moderna3/moderna/fragment_library/LIRdb.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library 2026-02-14T09:51:31,101 copying rna_tools/tools/mini_moderna3/moderna/fragment_library/StructureLibrary.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library 2026-02-14T09:51:31,103 copying rna_tools/tools/mini_moderna3/moderna/fragment_library/LIR.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library 2026-02-14T09:51:31,105 creating build/lib/rna_tools/tools/mini_moderna3/moderna/isosteric 2026-02-14T09:51:31,106 copying rna_tools/tools/mini_moderna3/moderna/isosteric/__init__.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/isosteric 2026-02-14T09:51:31,108 copying rna_tools/tools/mini_moderna3/moderna/isosteric/IsostericityMatrices.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/isosteric 2026-02-14T09:51:31,110 copying rna_tools/tools/mini_moderna3/moderna/isosteric/Isostericity.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/isosteric 2026-02-14T09:51:31,112 copying rna_tools/tools/mini_moderna3/moderna/isosteric/IsostericModelling.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/isosteric 2026-02-14T09:51:31,114 creating build/lib/rna_tools/tools/mini_moderna3/moderna/util 2026-02-14T09:51:31,115 copying rna_tools/tools/mini_moderna3/moderna/util/validators.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/util 2026-02-14T09:51:31,117 copying rna_tools/tools/mini_moderna3/moderna/util/decorators.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/util 2026-02-14T09:51:31,119 copying rna_tools/tools/mini_moderna3/moderna/util/__init__.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/util 2026-02-14T09:51:31,120 copying rna_tools/tools/mini_moderna3/moderna/util/LogFile.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/util 2026-02-14T09:51:31,122 copying rna_tools/tools/mini_moderna3/moderna/util/Errors.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/util 2026-02-14T09:51:31,125 creating build/lib/rna_tools/tools/mini_moderna3/moderna/builder 2026-02-14T09:51:31,125 copying rna_tools/tools/mini_moderna3/moderna/builder/ChiRotator.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/builder 2026-02-14T09:51:31,127 copying rna_tools/tools/mini_moderna3/moderna/builder/__init__.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/builder 2026-02-14T09:51:31,129 copying rna_tools/tools/mini_moderna3/moderna/builder/Constants.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/builder 2026-02-14T09:51:31,130 copying rna_tools/tools/mini_moderna3/moderna/builder/BackboneBuilder.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/builder 2026-02-14T09:51:31,133 copying rna_tools/tools/mini_moderna3/moderna/builder/PhosphateBuilder.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/builder 2026-02-14T09:51:31,135 copying rna_tools/tools/mini_moderna3/moderna/builder/CoordBuilder.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/builder 2026-02-14T09:51:31,137 copying rna_tools/tools/mini_moderna3/moderna/builder/FCCDLoopCloser.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/builder 2026-02-14T09:51:31,140 creating build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-02-14T09:51:31,141 copying rna_tools/tools/mini_moderna3/moderna/analyze/StackingCalculator.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-02-14T09:51:31,143 copying rna_tools/tools/mini_moderna3/moderna/analyze/HBondCalculator.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-02-14T09:51:31,145 copying rna_tools/tools/mini_moderna3/moderna/analyze/MolecularGraph.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-02-14T09:51:31,148 copying rna_tools/tools/mini_moderna3/moderna/analyze/__init__.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-02-14T09:51:31,149 copying rna_tools/tools/mini_moderna3/moderna/analyze/Constants.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-02-14T09:51:31,151 copying rna_tools/tools/mini_moderna3/moderna/analyze/PuckerCalculator.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-02-14T09:51:31,153 copying rna_tools/tools/mini_moderna3/moderna/analyze/RNASuites.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-02-14T09:51:31,154 copying rna_tools/tools/mini_moderna3/moderna/analyze/MolParameters.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-02-14T09:51:31,156 copying rna_tools/tools/mini_moderna3/moderna/analyze/BasePairCalculator.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-02-14T09:51:31,158 copying rna_tools/tools/mini_moderna3/moderna/analyze/MolTopologies.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-02-14T09:51:31,161 copying rna_tools/tools/mini_moderna3/moderna/analyze/GeometryAnalyzer.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-02-14T09:51:31,162 copying rna_tools/tools/mini_moderna3/moderna/analyze/ClashRecognizer.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-02-14T09:51:31,164 copying rna_tools/tools/mini_moderna3/moderna/analyze/ChainConnectivity.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-02-14T09:51:31,166 copying rna_tools/tools/mini_moderna3/moderna/analyze/GeometryStatistics.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-02-14T09:51:31,169 copying rna_tools/tools/mini_moderna3/moderna/analyze/MolGraphParser.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-02-14T09:51:31,171 copying rna_tools/tools/mini_moderna3/moderna/analyze/BaseRecognizer.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-02-14T09:51:31,173 copying rna_tools/tools/mini_moderna3/moderna/analyze/GeometryParameters.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-02-14T09:51:31,175 creating build/lib/rna_tools/tools/mini_moderna3/moderna/examples 2026-02-14T09:51:31,176 copying rna_tools/tools/mini_moderna3/moderna/examples/__init__.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/examples 2026-02-14T09:51:31,178 copying rna_tools/tools/mini_moderna3/moderna/examples/usage_examples.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/examples 2026-02-14T09:51:31,180 creating build/lib/rna_tools/tools/webserver-engine/web 2026-02-14T09:51:31,181 copying rna_tools/tools/webserver-engine/web/__init__.py -> build/lib/rna_tools/tools/webserver-engine/web 2026-02-14T09:51:31,183 copying rna_tools/tools/webserver-engine/web/wsgi.py -> build/lib/rna_tools/tools/webserver-engine/web 2026-02-14T09:51:31,184 copying rna_tools/tools/webserver-engine/web/settings.py -> build/lib/rna_tools/tools/webserver-engine/web 2026-02-14T09:51:31,187 copying rna_tools/tools/webserver-engine/web/urls.py -> build/lib/rna_tools/tools/webserver-engine/web 2026-02-14T09:51:31,189 creating build/lib/rna_tools/tools/webserver-engine/django_extensions 2026-02-14T09:51:31,190 copying rna_tools/tools/webserver-engine/django_extensions/__init__.py -> build/lib/rna_tools/tools/webserver-engine/django_extensions 2026-02-14T09:51:31,192 creating build/lib/rna_tools/tools/webserver-engine/app 2026-02-14T09:51:31,193 copying rna_tools/tools/webserver-engine/app/__init__.py -> build/lib/rna_tools/tools/webserver-engine/app 2026-02-14T09:51:31,194 copying rna_tools/tools/webserver-engine/app/models.py -> build/lib/rna_tools/tools/webserver-engine/app 2026-02-14T09:51:31,196 copying rna_tools/tools/webserver-engine/app/admin.py -> build/lib/rna_tools/tools/webserver-engine/app 2026-02-14T09:51:31,198 copying rna_tools/tools/webserver-engine/app/views.py -> build/lib/rna_tools/tools/webserver-engine/app 2026-02-14T09:51:31,201 creating build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2026-02-14T09:51:31,202 copying rna_tools/tools/clarna_play/ClaRNAlib/cl_settings_global.py -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2026-02-14T09:51:31,204 copying rna_tools/tools/clarna_play/ClaRNAlib/__init__.py -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2026-02-14T09:51:31,205 copying rna_tools/tools/clarna_play/ClaRNAlib/structure_ciach.py -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2026-02-14T09:51:31,207 copying rna_tools/tools/clarna_play/ClaRNAlib/clarna.py -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2026-02-14T09:51:31,210 copying rna_tools/tools/clarna_play/ClaRNAlib/cl_settings.py -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2026-02-14T09:51:31,211 copying rna_tools/tools/clarna_play/ClaRNAlib/utils.py -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2026-02-14T09:51:31,214 copying rna_tools/tools/clarna_play/ClaRNAlib/distances.py -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2026-02-14T09:51:31,217 copying rna_tools/tools/clarna_play/ClaRNAlib/normalize_pdb.py -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2026-02-14T09:51:31,219 creating build/lib/rna_tools/tools/clarna_play/lib 2026-02-14T09:51:31,219 copying rna_tools/tools/clarna_play/lib/__init__.py -> build/lib/rna_tools/tools/clarna_play/lib 2026-02-14T09:51:31,221 creating build/lib/rna_tools/tools/clarna_play/lib/rna_pdb_tools 2026-02-14T09:51:31,222 copying rna_tools/tools/clarna_play/lib/rna_pdb_tools/__init__.py -> build/lib/rna_tools/tools/clarna_play/lib/rna_pdb_tools 2026-02-14T09:51:31,224 copying rna_tools/tools/clarna_play/lib/rna_pdb_tools/rna-pdb-tools.py -> build/lib/rna_tools/tools/clarna_play/lib/rna_pdb_tools 2026-02-14T09:51:31,226 copying rna_tools/tools/clarna_play/lib/rna_pdb_tools/pdb_parser_lib.py -> build/lib/rna_tools/tools/clarna_play/lib/rna_pdb_tools 2026-02-14T09:51:31,229 creating build/lib/rna_tools/tools/mq/RASP 2026-02-14T09:51:31,231 copying rna_tools/tools/mq/RASP/__init__.py -> build/lib/rna_tools/tools/mq/RASP 2026-02-14T09:51:31,232 copying rna_tools/tools/mq/RASP/rasp_for_pymol.py -> build/lib/rna_tools/tools/mq/RASP 2026-02-14T09:51:31,234 copying rna_tools/tools/mq/RASP/RASP.py -> build/lib/rna_tools/tools/mq/RASP 2026-02-14T09:51:31,237 copying rna_tools/tools/mq/RASP/test.py -> build/lib/rna_tools/tools/mq/RASP 2026-02-14T09:51:31,239 copying rna_tools/tools/mq/RASP/rna_mq_rasp.py -> build/lib/rna_tools/tools/mq/RASP 2026-02-14T09:51:31,242 creating build/lib/rna_tools/tools/mq/FARNA 2026-02-14T09:51:31,243 copying rna_tools/tools/mq/FARNA/__init__.py -> build/lib/rna_tools/tools/mq/FARNA 2026-02-14T09:51:31,245 copying rna_tools/tools/mq/FARNA/FARNA.py -> build/lib/rna_tools/tools/mq/FARNA 2026-02-14T09:51:31,248 copying rna_tools/tools/mq/FARNA/rna_mq_farna.py -> build/lib/rna_tools/tools/mq/FARNA 2026-02-14T09:51:31,252 creating build/lib/rna_tools/tools/mq/FARFAR2 2026-02-14T09:51:31,253 copying rna_tools/tools/mq/FARFAR2/rna_mq_farfar2.py -> build/lib/rna_tools/tools/mq/FARFAR2 2026-02-14T09:51:31,256 copying rna_tools/tools/mq/FARFAR2/__init__.py -> build/lib/rna_tools/tools/mq/FARFAR2 2026-02-14T09:51:31,258 copying rna_tools/tools/mq/FARFAR2/FARFAR2.py -> build/lib/rna_tools/tools/mq/FARFAR2 2026-02-14T09:51:31,261 creating build/lib/rna_tools/tools/mq/rsRNASP 2026-02-14T09:51:31,263 copying rna_tools/tools/mq/rsRNASP/__init__.py -> build/lib/rna_tools/tools/mq/rsRNASP 2026-02-14T09:51:31,265 copying rna_tools/tools/mq/rsRNASP/rsRNASP.py -> build/lib/rna_tools/tools/mq/rsRNASP 2026-02-14T09:51:31,268 copying rna_tools/tools/mq/rsRNASP/rna_mq_rsRNASP.py -> build/lib/rna_tools/tools/mq/rsRNASP 2026-02-14T09:51:31,271 creating build/lib/rna_tools/tools/mq/RNAscore 2026-02-14T09:51:31,272 copying rna_tools/tools/mq/RNAscore/__init__.py -> build/lib/rna_tools/tools/mq/RNAscore 2026-02-14T09:51:31,275 copying rna_tools/tools/mq/RNAscore/RNAscore.py -> build/lib/rna_tools/tools/mq/RNAscore 2026-02-14T09:51:31,278 creating build/lib/rna_tools/tools/mq/RNAkb 2026-02-14T09:51:31,279 copying rna_tools/tools/mq/RNAkb/__init__.py -> build/lib/rna_tools/tools/mq/RNAkb 2026-02-14T09:51:31,281 copying rna_tools/tools/mq/RNAkb/RNAkb.py -> build/lib/rna_tools/tools/mq/RNAkb 2026-02-14T09:51:31,285 copying rna_tools/tools/mq/RNAkb/rna_mq_rnakb.py -> build/lib/rna_tools/tools/mq/RNAkb 2026-02-14T09:51:31,287 creating build/lib/rna_tools/tools/mq/eSCORE 2026-02-14T09:51:31,288 copying rna_tools/tools/mq/eSCORE/rna_mq_eSCORE.py -> build/lib/rna_tools/tools/mq/eSCORE 2026-02-14T09:51:31,291 copying rna_tools/tools/mq/eSCORE/__init__.py -> build/lib/rna_tools/tools/mq/eSCORE 2026-02-14T09:51:31,292 copying rna_tools/tools/mq/eSCORE/eSCORE.py -> build/lib/rna_tools/tools/mq/eSCORE 2026-02-14T09:51:31,295 creating build/lib/rna_tools/tools/mq/ClashScore 2026-02-14T09:51:31,296 copying rna_tools/tools/mq/ClashScore/ClashScore.py -> build/lib/rna_tools/tools/mq/ClashScore 2026-02-14T09:51:31,298 copying rna_tools/tools/mq/ClashScore/__init__.py -> build/lib/rna_tools/tools/mq/ClashScore 2026-02-14T09:51:31,300 copying rna_tools/tools/mq/ClashScore/rna_mq_clashscore.py -> build/lib/rna_tools/tools/mq/ClashScore 2026-02-14T09:51:31,302 creating build/lib/rna_tools/tools/mq/QRNAS 2026-02-14T09:51:31,303 copying rna_tools/tools/mq/QRNAS/__init__.py -> build/lib/rna_tools/tools/mq/QRNAS 2026-02-14T09:51:31,305 copying rna_tools/tools/mq/QRNAS/QRNAS.py -> build/lib/rna_tools/tools/mq/QRNAS 2026-02-14T09:51:31,308 creating build/lib/rna_tools/tools/mq/Dfire 2026-02-14T09:51:31,309 copying rna_tools/tools/mq/Dfire/__init__.py -> build/lib/rna_tools/tools/mq/Dfire 2026-02-14T09:51:31,311 copying rna_tools/tools/mq/Dfire/Dfire.py -> build/lib/rna_tools/tools/mq/Dfire 2026-02-14T09:51:31,314 copying rna_tools/tools/mq/Dfire/rna_mq_dfire.py -> build/lib/rna_tools/tools/mq/Dfire 2026-02-14T09:51:31,316 creating build/lib/rna_tools/tools/mq/lib 2026-02-14T09:51:31,318 copying rna_tools/tools/mq/lib/__init__.py -> build/lib/rna_tools/tools/mq/lib 2026-02-14T09:51:31,320 creating build/lib/rna_tools/tools/mq/AnalyzeGeometry 2026-02-14T09:51:31,321 copying rna_tools/tools/mq/AnalyzeGeometry/__init__.py -> build/lib/rna_tools/tools/mq/AnalyzeGeometry 2026-02-14T09:51:31,323 copying rna_tools/tools/mq/AnalyzeGeometry/AnalyzeGeometry.py -> build/lib/rna_tools/tools/mq/AnalyzeGeometry 2026-02-14T09:51:31,326 copying rna_tools/tools/mq/AnalyzeGeometry/rna_mq_analyzegeometry.py -> build/lib/rna_tools/tools/mq/AnalyzeGeometry 2026-02-14T09:51:31,329 creating build/lib/rna_tools/tools/mq/SimRNA 2026-02-14T09:51:31,330 copying rna_tools/tools/mq/SimRNA/__init__.py -> build/lib/rna_tools/tools/mq/SimRNA 2026-02-14T09:51:31,332 copying rna_tools/tools/mq/SimRNA/SimRNA.py -> build/lib/rna_tools/tools/mq/SimRNA 2026-02-14T09:51:31,335 copying rna_tools/tools/mq/SimRNA/rna_mq_simrna.py -> build/lib/rna_tools/tools/mq/SimRNA 2026-02-14T09:51:31,337 creating build/lib/rna_tools/tools/mq/RNA3DCNN 2026-02-14T09:51:31,338 copying rna_tools/tools/mq/RNA3DCNN/__init__.py -> build/lib/rna_tools/tools/mq/RNA3DCNN 2026-02-14T09:51:31,340 copying rna_tools/tools/mq/RNA3DCNN/rna_mq_rna3dcnn.py -> build/lib/rna_tools/tools/mq/RNA3DCNN 2026-02-14T09:51:31,343 copying rna_tools/tools/mq/RNA3DCNN/RNA3DCNN.py -> build/lib/rna_tools/tools/mq/RNA3DCNN 2026-02-14T09:51:31,347 creating build/lib/rna_tools/tools/mq/RASP/test 2026-02-14T09:51:31,348 copying rna_tools/tools/mq/RASP/test/__init__.py -> build/lib/rna_tools/tools/mq/RASP/test 2026-02-14T09:51:31,352 copying rna_tools/tools/mq/RASP/test/test.py -> build/lib/rna_tools/tools/mq/RASP/test 2026-02-14T09:51:31,356 creating build/lib/rna_tools/tools/mq/QRNAS/test 2026-02-14T09:51:31,358 copying rna_tools/tools/mq/QRNAS/test/__init__.py -> build/lib/rna_tools/tools/mq/QRNAS/test 2026-02-14T09:51:31,361 copying rna_tools/tools/mq/QRNAS/test/test.py -> build/lib/rna_tools/tools/mq/QRNAS/test 2026-02-14T09:51:31,363 creating build/lib/rna_tools/tools/mq/lib/wrappers 2026-02-14T09:51:31,364 copying rna_tools/tools/mq/lib/wrappers/__init__.py -> build/lib/rna_tools/tools/mq/lib/wrappers 2026-02-14T09:51:31,365 copying rna_tools/tools/mq/lib/wrappers/base_wrappers.py -> build/lib/rna_tools/tools/mq/lib/wrappers 2026-02-14T09:51:31,367 copying rna_tools/tools/mq/lib/wrappers/SubprocessUtils.py -> build/lib/rna_tools/tools/mq/lib/wrappers 2026-02-14T09:51:31,369 creating build/lib/rna_tools/tools/mq/lib/timex 2026-02-14T09:51:31,370 copying rna_tools/tools/mq/lib/timex/__init__.py -> build/lib/rna_tools/tools/mq/lib/timex 2026-02-14T09:51:31,371 copying rna_tools/tools/mq/lib/timex/timex.py -> build/lib/rna_tools/tools/mq/lib/timex 2026-02-14T09:51:31,374 creating build/lib/rna_tools/tools/mq/lib/shellgraphics 2026-02-14T09:51:31,375 copying rna_tools/tools/mq/lib/shellgraphics/__init__.py -> build/lib/rna_tools/tools/mq/lib/shellgraphics 2026-02-14T09:51:31,376 copying rna_tools/tools/mq/lib/shellgraphics/shellgraphics.py -> build/lib/rna_tools/tools/mq/lib/shellgraphics 2026-02-14T09:51:31,379 creating build/lib/rna_tools/tools/mq/lib/wrappers/test 2026-02-14T09:51:31,380 copying rna_tools/tools/mq/lib/wrappers/test/__init__.py -> build/lib/rna_tools/tools/mq/lib/wrappers/test 2026-02-14T09:51:31,381 copying rna_tools/tools/mq/lib/wrappers/test/test.py -> build/lib/rna_tools/tools/mq/lib/wrappers/test 2026-02-14T09:51:31,383 creating build/lib/rna_tools/tools/PyMOL4RNA/libs 2026-02-14T09:51:31,384 copying rna_tools/tools/PyMOL4RNA/libs/get_raw_distances.py -> build/lib/rna_tools/tools/PyMOL4RNA/libs 2026-02-14T09:51:31,387 copying rna_tools/tools/PyMOL4RNA/libs/__init__.py -> build/lib/rna_tools/tools/PyMOL4RNA/libs 2026-02-14T09:51:31,388 copying rna_tools/tools/PyMOL4RNA/libs/calc_gdt.py -> build/lib/rna_tools/tools/PyMOL4RNA/libs 2026-02-14T09:51:31,390 copying rna_tools/tools/PyMOL4RNA/libs/colorbyrmsd.py -> build/lib/rna_tools/tools/PyMOL4RNA/libs 2026-02-14T09:51:31,392 copying rna_tools/tools/PyMOL4RNA/libs/show_contacts.py -> build/lib/rna_tools/tools/PyMOL4RNA/libs 2026-02-14T09:51:31,394 copying rna_tools/tools/PyMOL4RNA/libs/pymol_daslab.py -> build/lib/rna_tools/tools/PyMOL4RNA/libs 2026-02-14T09:51:31,397 copying rna_tools/tools/PyMOL4RNA/libs/pucker.py -> build/lib/rna_tools/tools/PyMOL4RNA/libs 2026-02-14T09:51:31,399 creating build/lib/rna_tools/tools/pdb_formatix/test 2026-02-14T09:51:31,400 copying rna_tools/tools/pdb_formatix/test/__init__.py -> build/lib/rna_tools/tools/pdb_formatix/test 2026-02-14T09:51:31,402 copying rna_tools/tools/pdb_formatix/test/test.py -> build/lib/rna_tools/tools/pdb_formatix/test 2026-02-14T09:51:31,404 running egg_info 2026-02-14T09:51:31,411 writing rna_tools.egg-info/PKG-INFO 2026-02-14T09:51:31,414 writing dependency_links to rna_tools.egg-info/dependency_links.txt 2026-02-14T09:51:31,416 writing requirements to rna_tools.egg-info/requires.txt 2026-02-14T09:51:31,417 writing top-level names to rna_tools.egg-info/top_level.txt 2026-02-14T09:51:31,490 reading manifest file 'rna_tools.egg-info/SOURCES.txt' 2026-02-14T09:51:31,527 reading manifest template 'MANIFEST.in' 2026-02-14T09:51:32,179 adding license file 'LICENSE' 2026-02-14T09:51:32,263 writing manifest file 'rna_tools.egg-info/SOURCES.txt' 2026-02-14T09:51:32,285 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.data' is absent from the `packages` configuration. 2026-02-14T09:51:32,285 !! 2026-02-14T09:51:32,287 ******************************************************************************** 2026-02-14T09:51:32,287 ############################ 2026-02-14T09:51:32,288 # Package would be ignored # 2026-02-14T09:51:32,288 ############################ 2026-02-14T09:51:32,289 Python recognizes 'rna_tools.data' as an importable package[^1], 2026-02-14T09:51:32,290 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:32,291 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:32,291 package, please make sure that 'rna_tools.data' is explicitly added 2026-02-14T09:51:32,292 to the `packages` configuration field. 2026-02-14T09:51:32,292 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:32,293 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:32,293 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:32,294 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:32,295 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:32,296 If you don't want 'rna_tools.data' to be distributed and are 2026-02-14T09:51:32,296 already explicitly excluding 'rna_tools.data' via 2026-02-14T09:51:32,297 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:32,297 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:32,297 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:32,298 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:32,299 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:32,300 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:32,301 even if it does not contain any `.py` files. 2026-02-14T09:51:32,301 On the other hand, currently there is no concept of package data 2026-02-14T09:51:32,302 directory, all directories are treated like packages. 2026-02-14T09:51:32,302 ******************************************************************************** 2026-02-14T09:51:32,303 !! 2026-02-14T09:51:32,304 check.warn(importable) 2026-02-14T09:51:32,304 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tests' is absent from the `packages` configuration. 2026-02-14T09:51:32,305 !! 2026-02-14T09:51:32,306 ******************************************************************************** 2026-02-14T09:51:32,307 ############################ 2026-02-14T09:51:32,307 # Package would be ignored # 2026-02-14T09:51:32,308 ############################ 2026-02-14T09:51:32,308 Python recognizes 'rna_tools.tests' as an importable package[^1], 2026-02-14T09:51:32,309 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:32,310 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:32,310 package, please make sure that 'rna_tools.tests' is explicitly added 2026-02-14T09:51:32,310 to the `packages` configuration field. 2026-02-14T09:51:32,311 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:32,312 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:32,312 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:32,313 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:32,314 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:32,315 If you don't want 'rna_tools.tests' to be distributed and are 2026-02-14T09:51:32,316 already explicitly excluding 'rna_tools.tests' via 2026-02-14T09:51:32,317 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:32,317 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:32,318 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:32,319 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:32,319 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:32,320 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:32,321 even if it does not contain any `.py` files. 2026-02-14T09:51:32,321 On the other hand, currently there is no concept of package data 2026-02-14T09:51:32,321 directory, all directories are treated like packages. 2026-02-14T09:51:32,321 ******************************************************************************** 2026-02-14T09:51:32,322 !! 2026-02-14T09:51:32,322 check.warn(importable) 2026-02-14T09:51:32,323 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tests.test_import_module' is absent from the `packages` configuration. 2026-02-14T09:51:32,323 !! 2026-02-14T09:51:32,324 ******************************************************************************** 2026-02-14T09:51:32,324 ############################ 2026-02-14T09:51:32,325 # Package would be ignored # 2026-02-14T09:51:32,325 ############################ 2026-02-14T09:51:32,326 Python recognizes 'rna_tools.tests.test_import_module' as an importable package[^1], 2026-02-14T09:51:32,326 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:32,327 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:32,328 package, please make sure that 'rna_tools.tests.test_import_module' is explicitly added 2026-02-14T09:51:32,328 to the `packages` configuration field. 2026-02-14T09:51:32,329 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:32,330 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:32,330 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:32,331 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:32,332 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:32,334 If you don't want 'rna_tools.tests.test_import_module' to be distributed and are 2026-02-14T09:51:32,334 already explicitly excluding 'rna_tools.tests.test_import_module' via 2026-02-14T09:51:32,335 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:32,335 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:32,336 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:32,337 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:32,337 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:32,339 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:32,339 even if it does not contain any `.py` files. 2026-02-14T09:51:32,340 On the other hand, currently there is no concept of package data 2026-02-14T09:51:32,340 directory, all directories are treated like packages. 2026-02-14T09:51:32,341 ******************************************************************************** 2026-02-14T09:51:32,342 !! 2026-02-14T09:51:32,342 check.warn(importable) 2026-02-14T09:51:32,343 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tests.test_import_module.test_data' is absent from the `packages` configuration. 2026-02-14T09:51:32,343 !! 2026-02-14T09:51:32,344 ******************************************************************************** 2026-02-14T09:51:32,345 ############################ 2026-02-14T09:51:32,345 # Package would be ignored # 2026-02-14T09:51:32,345 ############################ 2026-02-14T09:51:32,346 Python recognizes 'rna_tools.tests.test_import_module.test_data' as an importable package[^1], 2026-02-14T09:51:32,346 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:32,347 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:32,347 package, please make sure that 'rna_tools.tests.test_import_module.test_data' is explicitly added 2026-02-14T09:51:32,347 to the `packages` configuration field. 2026-02-14T09:51:32,348 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:32,349 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:32,349 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:32,350 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:32,350 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:32,351 If you don't want 'rna_tools.tests.test_import_module.test_data' to be distributed and are 2026-02-14T09:51:32,351 already explicitly excluding 'rna_tools.tests.test_import_module.test_data' via 2026-02-14T09:51:32,352 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:32,352 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:32,353 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:32,354 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:32,355 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:32,356 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:32,357 even if it does not contain any `.py` files. 2026-02-14T09:51:32,357 On the other hand, currently there is no concept of package data 2026-02-14T09:51:32,358 directory, all directories are treated like packages. 2026-02-14T09:51:32,359 ******************************************************************************** 2026-02-14T09:51:32,360 !! 2026-02-14T09:51:32,360 check.warn(importable) 2026-02-14T09:51:32,361 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.ClashCalc.test_data' is absent from the `packages` configuration. 2026-02-14T09:51:32,361 !! 2026-02-14T09:51:32,362 ******************************************************************************** 2026-02-14T09:51:32,362 ############################ 2026-02-14T09:51:32,363 # Package would be ignored # 2026-02-14T09:51:32,363 ############################ 2026-02-14T09:51:32,364 Python recognizes 'rna_tools.tools.ClashCalc.test_data' as an importable package[^1], 2026-02-14T09:51:32,364 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:32,365 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:32,366 package, please make sure that 'rna_tools.tools.ClashCalc.test_data' is explicitly added 2026-02-14T09:51:32,366 to the `packages` configuration field. 2026-02-14T09:51:32,368 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:32,368 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:32,369 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:32,370 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:32,370 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:32,371 If you don't want 'rna_tools.tools.ClashCalc.test_data' to be distributed and are 2026-02-14T09:51:32,371 already explicitly excluding 'rna_tools.tools.ClashCalc.test_data' via 2026-02-14T09:51:32,371 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:32,372 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:32,372 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:32,373 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:32,374 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:32,375 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:32,375 even if it does not contain any `.py` files. 2026-02-14T09:51:32,376 On the other hand, currently there is no concept of package data 2026-02-14T09:51:32,376 directory, all directories are treated like packages. 2026-02-14T09:51:32,376 ******************************************************************************** 2026-02-14T09:51:32,377 !! 2026-02-14T09:51:32,378 check.warn(importable) 2026-02-14T09:51:32,379 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.PyMOL4RNA.doc' is absent from the `packages` configuration. 2026-02-14T09:51:32,379 !! 2026-02-14T09:51:32,380 ******************************************************************************** 2026-02-14T09:51:32,381 ############################ 2026-02-14T09:51:32,381 # Package would be ignored # 2026-02-14T09:51:32,382 ############################ 2026-02-14T09:51:32,383 Python recognizes 'rna_tools.tools.PyMOL4RNA.doc' as an importable package[^1], 2026-02-14T09:51:32,383 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:32,384 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:32,385 package, please make sure that 'rna_tools.tools.PyMOL4RNA.doc' is explicitly added 2026-02-14T09:51:32,385 to the `packages` configuration field. 2026-02-14T09:51:32,387 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:32,387 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:32,387 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:32,388 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:32,389 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:32,390 If you don't want 'rna_tools.tools.PyMOL4RNA.doc' to be distributed and are 2026-02-14T09:51:32,391 already explicitly excluding 'rna_tools.tools.PyMOL4RNA.doc' via 2026-02-14T09:51:32,391 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:32,391 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:32,392 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:32,393 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:32,394 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:32,396 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:32,396 even if it does not contain any `.py` files. 2026-02-14T09:51:32,397 On the other hand, currently there is no concept of package data 2026-02-14T09:51:32,397 directory, all directories are treated like packages. 2026-02-14T09:51:32,398 ******************************************************************************** 2026-02-14T09:51:32,398 !! 2026-02-14T09:51:32,399 check.warn(importable) 2026-02-14T09:51:32,399 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.PyMOL4RNA.test_data' is absent from the `packages` configuration. 2026-02-14T09:51:32,399 !! 2026-02-14T09:51:32,400 ******************************************************************************** 2026-02-14T09:51:32,400 ############################ 2026-02-14T09:51:32,401 # Package would be ignored # 2026-02-14T09:51:32,401 ############################ 2026-02-14T09:51:32,401 Python recognizes 'rna_tools.tools.PyMOL4RNA.test_data' as an importable package[^1], 2026-02-14T09:51:32,402 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:32,403 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:32,403 package, please make sure that 'rna_tools.tools.PyMOL4RNA.test_data' is explicitly added 2026-02-14T09:51:32,403 to the `packages` configuration field. 2026-02-14T09:51:32,404 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:32,405 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:32,405 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:32,406 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:32,407 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:32,408 If you don't want 'rna_tools.tools.PyMOL4RNA.test_data' to be distributed and are 2026-02-14T09:51:32,408 already explicitly excluding 'rna_tools.tools.PyMOL4RNA.test_data' via 2026-02-14T09:51:32,409 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:32,410 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:32,410 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:32,411 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:32,412 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:32,414 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:32,414 even if it does not contain any `.py` files. 2026-02-14T09:51:32,414 On the other hand, currently there is no concept of package data 2026-02-14T09:51:32,415 directory, all directories are treated like packages. 2026-02-14T09:51:32,415 ******************************************************************************** 2026-02-14T09:51:32,416 !! 2026-02-14T09:51:32,417 check.warn(importable) 2026-02-14T09:51:32,417 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.clanstix.doc' is absent from the `packages` configuration. 2026-02-14T09:51:32,418 !! 2026-02-14T09:51:32,419 ******************************************************************************** 2026-02-14T09:51:32,419 ############################ 2026-02-14T09:51:32,420 # Package would be ignored # 2026-02-14T09:51:32,420 ############################ 2026-02-14T09:51:32,421 Python recognizes 'rna_tools.tools.clanstix.doc' as an importable package[^1], 2026-02-14T09:51:32,421 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:32,422 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:32,423 package, please make sure that 'rna_tools.tools.clanstix.doc' is explicitly added 2026-02-14T09:51:32,423 to the `packages` configuration field. 2026-02-14T09:51:32,424 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:32,424 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:32,424 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:32,425 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:32,426 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:32,427 If you don't want 'rna_tools.tools.clanstix.doc' to be distributed and are 2026-02-14T09:51:32,427 already explicitly excluding 'rna_tools.tools.clanstix.doc' via 2026-02-14T09:51:32,427 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:32,428 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:32,428 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:32,429 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:32,430 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:32,431 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:32,432 even if it does not contain any `.py` files. 2026-02-14T09:51:32,432 On the other hand, currently there is no concept of package data 2026-02-14T09:51:32,432 directory, all directories are treated like packages. 2026-02-14T09:51:32,433 ******************************************************************************** 2026-02-14T09:51:32,434 !! 2026-02-14T09:51:32,435 check.warn(importable) 2026-02-14T09:51:32,435 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.clanstix.test_data' is absent from the `packages` configuration. 2026-02-14T09:51:32,436 !! 2026-02-14T09:51:32,437 ******************************************************************************** 2026-02-14T09:51:32,438 ############################ 2026-02-14T09:51:32,438 # Package would be ignored # 2026-02-14T09:51:32,439 ############################ 2026-02-14T09:51:32,439 Python recognizes 'rna_tools.tools.clanstix.test_data' as an importable package[^1], 2026-02-14T09:51:32,440 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:32,441 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:32,441 package, please make sure that 'rna_tools.tools.clanstix.test_data' is explicitly added 2026-02-14T09:51:32,442 to the `packages` configuration field. 2026-02-14T09:51:32,443 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:32,443 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:32,443 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:32,444 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:32,446 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:32,447 If you don't want 'rna_tools.tools.clanstix.test_data' to be distributed and are 2026-02-14T09:51:32,447 already explicitly excluding 'rna_tools.tools.clanstix.test_data' via 2026-02-14T09:51:32,448 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:32,449 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:32,449 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:32,450 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:32,451 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:32,452 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:32,452 even if it does not contain any `.py` files. 2026-02-14T09:51:32,453 On the other hand, currently there is no concept of package data 2026-02-14T09:51:32,453 directory, all directories are treated like packages. 2026-02-14T09:51:32,453 ******************************************************************************** 2026-02-14T09:51:32,454 !! 2026-02-14T09:51:32,454 check.warn(importable) 2026-02-14T09:51:32,455 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.clanstix.test_data.rp17_del' is absent from the `packages` configuration. 2026-02-14T09:51:32,455 !! 2026-02-14T09:51:32,456 ******************************************************************************** 2026-02-14T09:51:32,456 ############################ 2026-02-14T09:51:32,457 # Package would be ignored # 2026-02-14T09:51:32,457 ############################ 2026-02-14T09:51:32,457 Python recognizes 'rna_tools.tools.clanstix.test_data.rp17_del' as an importable package[^1], 2026-02-14T09:51:32,458 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:32,459 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:32,459 package, please make sure that 'rna_tools.tools.clanstix.test_data.rp17_del' is explicitly added 2026-02-14T09:51:32,460 to the `packages` configuration field. 2026-02-14T09:51:32,461 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:32,461 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:32,462 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:32,463 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:32,464 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:32,465 If you don't want 'rna_tools.tools.clanstix.test_data.rp17_del' to be distributed and are 2026-02-14T09:51:32,466 already explicitly excluding 'rna_tools.tools.clanstix.test_data.rp17_del' via 2026-02-14T09:51:32,466 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:32,466 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:32,467 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:32,468 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:32,469 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:32,470 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:32,471 even if it does not contain any `.py` files. 2026-02-14T09:51:32,471 On the other hand, currently there is no concept of package data 2026-02-14T09:51:32,472 directory, all directories are treated like packages. 2026-02-14T09:51:32,472 ******************************************************************************** 2026-02-14T09:51:32,474 !! 2026-02-14T09:51:32,474 check.warn(importable) 2026-02-14T09:51:32,475 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.clarna_app.data' is absent from the `packages` configuration. 2026-02-14T09:51:32,475 !! 2026-02-14T09:51:32,476 ******************************************************************************** 2026-02-14T09:51:32,477 ############################ 2026-02-14T09:51:32,477 # Package would be ignored # 2026-02-14T09:51:32,477 ############################ 2026-02-14T09:51:32,478 Python recognizes 'rna_tools.tools.clarna_app.data' as an importable package[^1], 2026-02-14T09:51:32,478 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:32,479 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:32,479 package, please make sure that 'rna_tools.tools.clarna_app.data' is explicitly added 2026-02-14T09:51:32,479 to the `packages` configuration field. 2026-02-14T09:51:32,480 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:32,480 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:32,481 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:32,482 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:32,482 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:32,483 If you don't want 'rna_tools.tools.clarna_app.data' to be distributed and are 2026-02-14T09:51:32,484 already explicitly excluding 'rna_tools.tools.clarna_app.data' via 2026-02-14T09:51:32,484 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:32,485 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:32,485 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:32,486 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:32,487 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:32,489 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:32,489 even if it does not contain any `.py` files. 2026-02-14T09:51:32,490 On the other hand, currently there is no concept of package data 2026-02-14T09:51:32,490 directory, all directories are treated like packages. 2026-02-14T09:51:32,491 ******************************************************************************** 2026-02-14T09:51:32,492 !! 2026-02-14T09:51:32,492 check.warn(importable) 2026-02-14T09:51:32,493 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.clarna_play.ClaRNAlib.lib' is absent from the `packages` configuration. 2026-02-14T09:51:32,493 !! 2026-02-14T09:51:32,494 ******************************************************************************** 2026-02-14T09:51:32,494 ############################ 2026-02-14T09:51:32,495 # Package would be ignored # 2026-02-14T09:51:32,495 ############################ 2026-02-14T09:51:32,496 Python recognizes 'rna_tools.tools.clarna_play.ClaRNAlib.lib' as an importable package[^1], 2026-02-14T09:51:32,496 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:32,497 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:32,498 package, please make sure that 'rna_tools.tools.clarna_play.ClaRNAlib.lib' is explicitly added 2026-02-14T09:51:32,498 to the `packages` configuration field. 2026-02-14T09:51:32,499 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:32,500 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:32,501 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:32,501 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:32,502 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:32,503 If you don't want 'rna_tools.tools.clarna_play.ClaRNAlib.lib' to be distributed and are 2026-02-14T09:51:32,503 already explicitly excluding 'rna_tools.tools.clarna_play.ClaRNAlib.lib' via 2026-02-14T09:51:32,503 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:32,504 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:32,504 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:32,505 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:32,505 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:32,507 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:32,507 even if it does not contain any `.py` files. 2026-02-14T09:51:32,507 On the other hand, currently there is no concept of package data 2026-02-14T09:51:32,508 directory, all directories are treated like packages. 2026-02-14T09:51:32,508 ******************************************************************************** 2026-02-14T09:51:32,509 !! 2026-02-14T09:51:32,510 check.warn(importable) 2026-02-14T09:51:32,510 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.clarna_play.docs' is absent from the `packages` configuration. 2026-02-14T09:51:32,511 !! 2026-02-14T09:51:32,512 ******************************************************************************** 2026-02-14T09:51:32,513 ############################ 2026-02-14T09:51:32,513 # Package would be ignored # 2026-02-14T09:51:32,514 ############################ 2026-02-14T09:51:32,514 Python recognizes 'rna_tools.tools.clarna_play.docs' as an importable package[^1], 2026-02-14T09:51:32,515 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:32,516 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:32,517 package, please make sure that 'rna_tools.tools.clarna_play.docs' is explicitly added 2026-02-14T09:51:32,517 to the `packages` configuration field. 2026-02-14T09:51:32,518 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:32,519 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:32,519 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:32,521 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:32,522 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:32,523 If you don't want 'rna_tools.tools.clarna_play.docs' to be distributed and are 2026-02-14T09:51:32,523 already explicitly excluding 'rna_tools.tools.clarna_play.docs' via 2026-02-14T09:51:32,524 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:32,524 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:32,525 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:32,526 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:32,527 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:32,529 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:32,529 even if it does not contain any `.py` files. 2026-02-14T09:51:32,530 On the other hand, currently there is no concept of package data 2026-02-14T09:51:32,530 directory, all directories are treated like packages. 2026-02-14T09:51:32,530 ******************************************************************************** 2026-02-14T09:51:32,531 !! 2026-02-14T09:51:32,531 check.warn(importable) 2026-02-14T09:51:32,532 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.clarna_play.lib.ClaRNAwd_to_vienaSS' is absent from the `packages` configuration. 2026-02-14T09:51:32,532 !! 2026-02-14T09:51:32,533 ******************************************************************************** 2026-02-14T09:51:32,533 ############################ 2026-02-14T09:51:32,534 # Package would be ignored # 2026-02-14T09:51:32,534 ############################ 2026-02-14T09:51:32,535 Python recognizes 'rna_tools.tools.clarna_play.lib.ClaRNAwd_to_vienaSS' as an importable package[^1], 2026-02-14T09:51:32,535 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:32,536 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:32,536 package, please make sure that 'rna_tools.tools.clarna_play.lib.ClaRNAwd_to_vienaSS' is explicitly added 2026-02-14T09:51:32,537 to the `packages` configuration field. 2026-02-14T09:51:32,538 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:32,539 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:32,539 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:32,540 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:32,541 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:32,542 If you don't want 'rna_tools.tools.clarna_play.lib.ClaRNAwd_to_vienaSS' to be distributed and are 2026-02-14T09:51:32,543 already explicitly excluding 'rna_tools.tools.clarna_play.lib.ClaRNAwd_to_vienaSS' via 2026-02-14T09:51:32,544 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:32,544 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:32,545 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:32,546 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:32,547 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:32,548 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:32,549 even if it does not contain any `.py` files. 2026-02-14T09:51:32,549 On the other hand, currently there is no concept of package data 2026-02-14T09:51:32,550 directory, all directories are treated like packages. 2026-02-14T09:51:32,550 ******************************************************************************** 2026-02-14T09:51:32,551 !! 2026-02-14T09:51:32,552 check.warn(importable) 2026-02-14T09:51:32,552 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.clarna_play.test_data' is absent from the `packages` configuration. 2026-02-14T09:51:32,553 !! 2026-02-14T09:51:32,554 ******************************************************************************** 2026-02-14T09:51:32,554 ############################ 2026-02-14T09:51:32,555 # Package would be ignored # 2026-02-14T09:51:32,556 ############################ 2026-02-14T09:51:32,556 Python recognizes 'rna_tools.tools.clarna_play.test_data' as an importable package[^1], 2026-02-14T09:51:32,556 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:32,557 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:32,557 package, please make sure that 'rna_tools.tools.clarna_play.test_data' is explicitly added 2026-02-14T09:51:32,557 to the `packages` configuration field. 2026-02-14T09:51:32,558 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:32,559 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:32,559 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:32,560 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:32,560 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:32,561 If you don't want 'rna_tools.tools.clarna_play.test_data' to be distributed and are 2026-02-14T09:51:32,561 already explicitly excluding 'rna_tools.tools.clarna_play.test_data' via 2026-02-14T09:51:32,562 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:32,562 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:32,562 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:32,563 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:32,565 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:32,566 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:32,566 even if it does not contain any `.py` files. 2026-02-14T09:51:32,567 On the other hand, currently there is no concept of package data 2026-02-14T09:51:32,568 directory, all directories are treated like packages. 2026-02-14T09:51:32,568 ******************************************************************************** 2026-02-14T09:51:32,569 !! 2026-02-14T09:51:32,570 check.warn(importable) 2026-02-14T09:51:32,570 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.clarna_play.test_output' is absent from the `packages` configuration. 2026-02-14T09:51:32,571 !! 2026-02-14T09:51:32,572 ******************************************************************************** 2026-02-14T09:51:32,572 ############################ 2026-02-14T09:51:32,573 # Package would be ignored # 2026-02-14T09:51:32,573 ############################ 2026-02-14T09:51:32,574 Python recognizes 'rna_tools.tools.clarna_play.test_output' as an importable package[^1], 2026-02-14T09:51:32,574 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:32,575 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:32,576 package, please make sure that 'rna_tools.tools.clarna_play.test_output' is explicitly added 2026-02-14T09:51:32,576 to the `packages` configuration field. 2026-02-14T09:51:32,577 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:32,578 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:32,578 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:32,579 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:32,580 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:32,582 If you don't want 'rna_tools.tools.clarna_play.test_output' to be distributed and are 2026-02-14T09:51:32,582 already explicitly excluding 'rna_tools.tools.clarna_play.test_output' via 2026-02-14T09:51:32,582 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:32,583 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:32,583 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:32,584 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:32,584 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:32,586 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:32,586 even if it does not contain any `.py` files. 2026-02-14T09:51:32,586 On the other hand, currently there is no concept of package data 2026-02-14T09:51:32,587 directory, all directories are treated like packages. 2026-02-14T09:51:32,587 ******************************************************************************** 2026-02-14T09:51:32,588 !! 2026-02-14T09:51:32,588 check.warn(importable) 2026-02-14T09:51:32,588 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.clarna_play.tests' is absent from the `packages` configuration. 2026-02-14T09:51:32,589 !! 2026-02-14T09:51:32,590 ******************************************************************************** 2026-02-14T09:51:32,590 ############################ 2026-02-14T09:51:32,591 # Package would be ignored # 2026-02-14T09:51:32,591 ############################ 2026-02-14T09:51:32,592 Python recognizes 'rna_tools.tools.clarna_play.tests' as an importable package[^1], 2026-02-14T09:51:32,593 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:32,594 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:32,595 package, please make sure that 'rna_tools.tools.clarna_play.tests' is explicitly added 2026-02-14T09:51:32,595 to the `packages` configuration field. 2026-02-14T09:51:32,596 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:32,597 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:32,597 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:32,598 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:32,599 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:32,600 If you don't want 'rna_tools.tools.clarna_play.tests' to be distributed and are 2026-02-14T09:51:32,601 already explicitly excluding 'rna_tools.tools.clarna_play.tests' via 2026-02-14T09:51:32,601 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:32,601 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:32,602 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:32,603 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:32,604 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:32,605 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:32,606 even if it does not contain any `.py` files. 2026-02-14T09:51:32,607 On the other hand, currently there is no concept of package data 2026-02-14T09:51:32,607 directory, all directories are treated like packages. 2026-02-14T09:51:32,608 ******************************************************************************** 2026-02-14T09:51:32,609 !! 2026-02-14T09:51:32,609 check.warn(importable) 2026-02-14T09:51:32,609 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.df' is absent from the `packages` configuration. 2026-02-14T09:51:32,610 !! 2026-02-14T09:51:32,610 ******************************************************************************** 2026-02-14T09:51:32,611 ############################ 2026-02-14T09:51:32,611 # Package would be ignored # 2026-02-14T09:51:32,611 ############################ 2026-02-14T09:51:32,612 Python recognizes 'rna_tools.tools.df' as an importable package[^1], 2026-02-14T09:51:32,612 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:32,613 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:32,613 package, please make sure that 'rna_tools.tools.df' is explicitly added 2026-02-14T09:51:32,614 to the `packages` configuration field. 2026-02-14T09:51:32,614 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:32,615 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:32,615 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:32,616 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:32,617 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:32,617 If you don't want 'rna_tools.tools.df' to be distributed and are 2026-02-14T09:51:32,618 already explicitly excluding 'rna_tools.tools.df' via 2026-02-14T09:51:32,619 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:32,619 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:32,620 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:32,621 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:32,622 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:32,624 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:32,624 even if it does not contain any `.py` files. 2026-02-14T09:51:32,625 On the other hand, currently there is no concept of package data 2026-02-14T09:51:32,625 directory, all directories are treated like packages. 2026-02-14T09:51:32,626 ******************************************************************************** 2026-02-14T09:51:32,627 !! 2026-02-14T09:51:32,627 check.warn(importable) 2026-02-14T09:51:32,628 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.df.test_data' is absent from the `packages` configuration. 2026-02-14T09:51:32,628 !! 2026-02-14T09:51:32,629 ******************************************************************************** 2026-02-14T09:51:32,630 ############################ 2026-02-14T09:51:32,630 # Package would be ignored # 2026-02-14T09:51:32,631 ############################ 2026-02-14T09:51:32,631 Python recognizes 'rna_tools.tools.df.test_data' as an importable package[^1], 2026-02-14T09:51:32,632 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:32,633 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:32,633 package, please make sure that 'rna_tools.tools.df.test_data' is explicitly added 2026-02-14T09:51:32,634 to the `packages` configuration field. 2026-02-14T09:51:32,635 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:32,635 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:32,635 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:32,636 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:32,637 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:32,637 If you don't want 'rna_tools.tools.df.test_data' to be distributed and are 2026-02-14T09:51:32,638 already explicitly excluding 'rna_tools.tools.df.test_data' via 2026-02-14T09:51:32,638 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:32,638 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:32,639 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:32,639 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:32,640 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:32,641 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:32,642 even if it does not contain any `.py` files. 2026-02-14T09:51:32,642 On the other hand, currently there is no concept of package data 2026-02-14T09:51:32,642 directory, all directories are treated like packages. 2026-02-14T09:51:32,643 ******************************************************************************** 2026-02-14T09:51:32,644 !! 2026-02-14T09:51:32,644 check.warn(importable) 2026-02-14T09:51:32,645 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.diffpdb.doc' is absent from the `packages` configuration. 2026-02-14T09:51:32,645 !! 2026-02-14T09:51:32,647 ******************************************************************************** 2026-02-14T09:51:32,647 ############################ 2026-02-14T09:51:32,648 # Package would be ignored # 2026-02-14T09:51:32,648 ############################ 2026-02-14T09:51:32,649 Python recognizes 'rna_tools.tools.diffpdb.doc' as an importable package[^1], 2026-02-14T09:51:32,649 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:32,650 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:32,651 package, please make sure that 'rna_tools.tools.diffpdb.doc' is explicitly added 2026-02-14T09:51:32,651 to the `packages` configuration field. 2026-02-14T09:51:32,652 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:32,653 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:32,653 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:32,654 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:32,655 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:32,656 If you don't want 'rna_tools.tools.diffpdb.doc' to be distributed and are 2026-02-14T09:51:32,656 already explicitly excluding 'rna_tools.tools.diffpdb.doc' via 2026-02-14T09:51:32,657 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:32,657 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:32,658 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:32,659 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:32,660 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:32,661 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:32,662 even if it does not contain any `.py` files. 2026-02-14T09:51:32,662 On the other hand, currently there is no concept of package data 2026-02-14T09:51:32,662 directory, all directories are treated like packages. 2026-02-14T09:51:32,663 ******************************************************************************** 2026-02-14T09:51:32,663 !! 2026-02-14T09:51:32,664 check.warn(importable) 2026-02-14T09:51:32,664 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.diffpdb.lib' is absent from the `packages` configuration. 2026-02-14T09:51:32,665 !! 2026-02-14T09:51:32,665 ******************************************************************************** 2026-02-14T09:51:32,666 ############################ 2026-02-14T09:51:32,666 # Package would be ignored # 2026-02-14T09:51:32,667 ############################ 2026-02-14T09:51:32,667 Python recognizes 'rna_tools.tools.diffpdb.lib' as an importable package[^1], 2026-02-14T09:51:32,668 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:32,668 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:32,669 package, please make sure that 'rna_tools.tools.diffpdb.lib' is explicitly added 2026-02-14T09:51:32,669 to the `packages` configuration field. 2026-02-14T09:51:32,670 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:32,671 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:32,671 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:32,672 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:32,673 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:32,674 If you don't want 'rna_tools.tools.diffpdb.lib' to be distributed and are 2026-02-14T09:51:32,674 already explicitly excluding 'rna_tools.tools.diffpdb.lib' via 2026-02-14T09:51:32,675 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:32,675 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:32,676 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:32,677 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:32,677 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:32,679 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:32,679 even if it does not contain any `.py` files. 2026-02-14T09:51:32,680 On the other hand, currently there is no concept of package data 2026-02-14T09:51:32,680 directory, all directories are treated like packages. 2026-02-14T09:51:32,680 ******************************************************************************** 2026-02-14T09:51:32,681 !! 2026-02-14T09:51:32,682 check.warn(importable) 2026-02-14T09:51:32,682 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.diffpdb.output' is absent from the `packages` configuration. 2026-02-14T09:51:32,683 !! 2026-02-14T09:51:32,684 ******************************************************************************** 2026-02-14T09:51:32,684 ############################ 2026-02-14T09:51:32,685 # Package would be ignored # 2026-02-14T09:51:32,686 ############################ 2026-02-14T09:51:32,686 Python recognizes 'rna_tools.tools.diffpdb.output' as an importable package[^1], 2026-02-14T09:51:32,687 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:32,687 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:32,688 package, please make sure that 'rna_tools.tools.diffpdb.output' is explicitly added 2026-02-14T09:51:32,688 to the `packages` configuration field. 2026-02-14T09:51:32,689 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:32,689 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:32,689 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:32,690 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:32,691 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:32,691 If you don't want 'rna_tools.tools.diffpdb.output' to be distributed and are 2026-02-14T09:51:32,692 already explicitly excluding 'rna_tools.tools.diffpdb.output' via 2026-02-14T09:51:32,692 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:32,692 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:32,693 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:32,694 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:32,695 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:32,696 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:32,697 even if it does not contain any `.py` files. 2026-02-14T09:51:32,698 On the other hand, currently there is no concept of package data 2026-02-14T09:51:32,698 directory, all directories are treated like packages. 2026-02-14T09:51:32,699 ******************************************************************************** 2026-02-14T09:51:32,700 !! 2026-02-14T09:51:32,700 check.warn(importable) 2026-02-14T09:51:32,701 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.diffpdb.test_data' is absent from the `packages` configuration. 2026-02-14T09:51:32,701 !! 2026-02-14T09:51:32,702 ******************************************************************************** 2026-02-14T09:51:32,703 ############################ 2026-02-14T09:51:32,703 # Package would be ignored # 2026-02-14T09:51:32,704 ############################ 2026-02-14T09:51:32,704 Python recognizes 'rna_tools.tools.diffpdb.test_data' as an importable package[^1], 2026-02-14T09:51:32,705 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:32,706 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:32,706 package, please make sure that 'rna_tools.tools.diffpdb.test_data' is explicitly added 2026-02-14T09:51:32,707 to the `packages` configuration field. 2026-02-14T09:51:32,708 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:32,708 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:32,709 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:32,710 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:32,711 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:32,712 If you don't want 'rna_tools.tools.diffpdb.test_data' to be distributed and are 2026-02-14T09:51:32,712 already explicitly excluding 'rna_tools.tools.diffpdb.test_data' via 2026-02-14T09:51:32,713 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:32,713 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:32,714 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:32,714 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:32,715 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:32,716 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:32,716 even if it does not contain any `.py` files. 2026-02-14T09:51:32,717 On the other hand, currently there is no concept of package data 2026-02-14T09:51:32,717 directory, all directories are treated like packages. 2026-02-14T09:51:32,717 ******************************************************************************** 2026-02-14T09:51:32,718 !! 2026-02-14T09:51:32,718 check.warn(importable) 2026-02-14T09:51:32,719 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.md.data' is absent from the `packages` configuration. 2026-02-14T09:51:32,719 !! 2026-02-14T09:51:32,720 ******************************************************************************** 2026-02-14T09:51:32,720 ############################ 2026-02-14T09:51:32,721 # Package would be ignored # 2026-02-14T09:51:32,721 ############################ 2026-02-14T09:51:32,722 Python recognizes 'rna_tools.tools.md.data' as an importable package[^1], 2026-02-14T09:51:32,722 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:32,723 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:32,724 package, please make sure that 'rna_tools.tools.md.data' is explicitly added 2026-02-14T09:51:32,725 to the `packages` configuration field. 2026-02-14T09:51:32,726 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:32,726 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:32,727 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:32,728 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:32,729 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:32,730 If you don't want 'rna_tools.tools.md.data' to be distributed and are 2026-02-14T09:51:32,731 already explicitly excluding 'rna_tools.tools.md.data' via 2026-02-14T09:51:32,731 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:32,732 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:32,732 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:32,733 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:32,734 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:32,735 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:32,736 even if it does not contain any `.py` files. 2026-02-14T09:51:32,737 On the other hand, currently there is no concept of package data 2026-02-14T09:51:32,737 directory, all directories are treated like packages. 2026-02-14T09:51:32,738 ******************************************************************************** 2026-02-14T09:51:32,739 !! 2026-02-14T09:51:32,740 check.warn(importable) 2026-02-14T09:51:32,740 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.md.test_data' is absent from the `packages` configuration. 2026-02-14T09:51:32,741 !! 2026-02-14T09:51:32,741 ******************************************************************************** 2026-02-14T09:51:32,742 ############################ 2026-02-14T09:51:32,742 # Package would be ignored # 2026-02-14T09:51:32,742 ############################ 2026-02-14T09:51:32,743 Python recognizes 'rna_tools.tools.md.test_data' as an importable package[^1], 2026-02-14T09:51:32,743 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:32,744 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:32,744 package, please make sure that 'rna_tools.tools.md.test_data' is explicitly added 2026-02-14T09:51:32,745 to the `packages` configuration field. 2026-02-14T09:51:32,745 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:32,746 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:32,746 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:32,747 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:32,748 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:32,749 If you don't want 'rna_tools.tools.md.test_data' to be distributed and are 2026-02-14T09:51:32,750 already explicitly excluding 'rna_tools.tools.md.test_data' via 2026-02-14T09:51:32,750 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:32,751 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:32,752 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:32,753 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:32,754 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:32,756 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:32,757 even if it does not contain any `.py` files. 2026-02-14T09:51:32,758 On the other hand, currently there is no concept of package data 2026-02-14T09:51:32,758 directory, all directories are treated like packages. 2026-02-14T09:51:32,759 ******************************************************************************** 2026-02-14T09:51:32,760 !! 2026-02-14T09:51:32,761 check.warn(importable) 2026-02-14T09:51:32,761 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.md.test_output' is absent from the `packages` configuration. 2026-02-14T09:51:32,762 !! 2026-02-14T09:51:32,763 ******************************************************************************** 2026-02-14T09:51:32,763 ############################ 2026-02-14T09:51:32,764 # Package would be ignored # 2026-02-14T09:51:32,765 ############################ 2026-02-14T09:51:32,765 Python recognizes 'rna_tools.tools.md.test_output' as an importable package[^1], 2026-02-14T09:51:32,766 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:32,767 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:32,768 package, please make sure that 'rna_tools.tools.md.test_output' is explicitly added 2026-02-14T09:51:32,768 to the `packages` configuration field. 2026-02-14T09:51:32,770 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:32,770 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:32,771 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:32,772 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:32,773 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:32,774 If you don't want 'rna_tools.tools.md.test_output' to be distributed and are 2026-02-14T09:51:32,774 already explicitly excluding 'rna_tools.tools.md.test_output' via 2026-02-14T09:51:32,775 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:32,775 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:32,776 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:32,776 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:32,777 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:32,779 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:32,779 even if it does not contain any `.py` files. 2026-02-14T09:51:32,780 On the other hand, currently there is no concept of package data 2026-02-14T09:51:32,780 directory, all directories are treated like packages. 2026-02-14T09:51:32,781 ******************************************************************************** 2026-02-14T09:51:32,782 !! 2026-02-14T09:51:32,782 check.warn(importable) 2026-02-14T09:51:32,783 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.mini_moderna3.moderna.analyze.suites' is absent from the `packages` configuration. 2026-02-14T09:51:32,783 !! 2026-02-14T09:51:32,784 ******************************************************************************** 2026-02-14T09:51:32,785 ############################ 2026-02-14T09:51:32,786 # Package would be ignored # 2026-02-14T09:51:32,787 ############################ 2026-02-14T09:51:32,787 Python recognizes 'rna_tools.tools.mini_moderna3.moderna.analyze.suites' as an importable package[^1], 2026-02-14T09:51:32,788 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:32,789 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:32,790 package, please make sure that 'rna_tools.tools.mini_moderna3.moderna.analyze.suites' is explicitly added 2026-02-14T09:51:32,791 to the `packages` configuration field. 2026-02-14T09:51:32,792 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:32,792 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:32,793 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:32,794 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:32,795 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:32,796 If you don't want 'rna_tools.tools.mini_moderna3.moderna.analyze.suites' to be distributed and are 2026-02-14T09:51:32,797 already explicitly excluding 'rna_tools.tools.mini_moderna3.moderna.analyze.suites' via 2026-02-14T09:51:32,797 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:32,798 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:32,799 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:32,800 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:32,801 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:32,803 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:32,803 even if it does not contain any `.py` files. 2026-02-14T09:51:32,804 On the other hand, currently there is no concept of package data 2026-02-14T09:51:32,804 directory, all directories are treated like packages. 2026-02-14T09:51:32,804 ******************************************************************************** 2026-02-14T09:51:32,805 !! 2026-02-14T09:51:32,806 check.warn(importable) 2026-02-14T09:51:32,806 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.mini_moderna3.moderna.analyze.suites.test_data' is absent from the `packages` configuration. 2026-02-14T09:51:32,807 !! 2026-02-14T09:51:32,807 ******************************************************************************** 2026-02-14T09:51:32,808 ############################ 2026-02-14T09:51:32,808 # Package would be ignored # 2026-02-14T09:51:32,809 ############################ 2026-02-14T09:51:32,809 Python recognizes 'rna_tools.tools.mini_moderna3.moderna.analyze.suites.test_data' as an importable package[^1], 2026-02-14T09:51:32,810 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:32,811 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:32,811 package, please make sure that 'rna_tools.tools.mini_moderna3.moderna.analyze.suites.test_data' is explicitly added 2026-02-14T09:51:32,812 to the `packages` configuration field. 2026-02-14T09:51:32,813 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:32,813 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:32,814 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:32,815 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:32,817 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:32,818 If you don't want 'rna_tools.tools.mini_moderna3.moderna.analyze.suites.test_data' to be distributed and are 2026-02-14T09:51:32,819 already explicitly excluding 'rna_tools.tools.mini_moderna3.moderna.analyze.suites.test_data' via 2026-02-14T09:51:32,819 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:32,820 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:32,821 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:32,822 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:32,823 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:32,825 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:32,826 even if it does not contain any `.py` files. 2026-02-14T09:51:32,826 On the other hand, currently there is no concept of package data 2026-02-14T09:51:32,827 directory, all directories are treated like packages. 2026-02-14T09:51:32,827 ******************************************************************************** 2026-02-14T09:51:32,828 !! 2026-02-14T09:51:32,829 check.warn(importable) 2026-02-14T09:51:32,830 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.mini_moderna3.moderna.data' is absent from the `packages` configuration. 2026-02-14T09:51:32,830 !! 2026-02-14T09:51:32,832 ******************************************************************************** 2026-02-14T09:51:32,832 ############################ 2026-02-14T09:51:32,833 # Package would be ignored # 2026-02-14T09:51:32,834 ############################ 2026-02-14T09:51:32,834 Python recognizes 'rna_tools.tools.mini_moderna3.moderna.data' as an importable package[^1], 2026-02-14T09:51:32,835 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:32,835 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:32,836 package, please make sure that 'rna_tools.tools.mini_moderna3.moderna.data' is explicitly added 2026-02-14T09:51:32,836 to the `packages` configuration field. 2026-02-14T09:51:32,837 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:32,838 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:32,838 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:32,839 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:32,840 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:32,841 If you don't want 'rna_tools.tools.mini_moderna3.moderna.data' to be distributed and are 2026-02-14T09:51:32,841 already explicitly excluding 'rna_tools.tools.mini_moderna3.moderna.data' via 2026-02-14T09:51:32,842 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:32,842 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:32,843 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:32,844 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:32,845 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:32,847 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:32,847 even if it does not contain any `.py` files. 2026-02-14T09:51:32,848 On the other hand, currently there is no concept of package data 2026-02-14T09:51:32,849 directory, all directories are treated like packages. 2026-02-14T09:51:32,849 ******************************************************************************** 2026-02-14T09:51:32,851 !! 2026-02-14T09:51:32,851 check.warn(importable) 2026-02-14T09:51:32,852 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.mini_moderna3.moderna.data.base_pairs' is absent from the `packages` configuration. 2026-02-14T09:51:32,852 !! 2026-02-14T09:51:32,854 ******************************************************************************** 2026-02-14T09:51:32,854 ############################ 2026-02-14T09:51:32,855 # Package would be ignored # 2026-02-14T09:51:32,855 ############################ 2026-02-14T09:51:32,856 Python recognizes 'rna_tools.tools.mini_moderna3.moderna.data.base_pairs' as an importable package[^1], 2026-02-14T09:51:32,856 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:32,858 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:32,858 package, please make sure that 'rna_tools.tools.mini_moderna3.moderna.data.base_pairs' is explicitly added 2026-02-14T09:51:32,859 to the `packages` configuration field. 2026-02-14T09:51:32,860 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:32,861 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:32,861 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:32,863 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:32,864 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:32,864 If you don't want 'rna_tools.tools.mini_moderna3.moderna.data.base_pairs' to be distributed and are 2026-02-14T09:51:32,865 already explicitly excluding 'rna_tools.tools.mini_moderna3.moderna.data.base_pairs' via 2026-02-14T09:51:32,865 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:32,866 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:32,866 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:32,867 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:32,868 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:32,869 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:32,870 even if it does not contain any `.py` files. 2026-02-14T09:51:32,870 On the other hand, currently there is no concept of package data 2026-02-14T09:51:32,871 directory, all directories are treated like packages. 2026-02-14T09:51:32,871 ******************************************************************************** 2026-02-14T09:51:32,872 !! 2026-02-14T09:51:32,872 check.warn(importable) 2026-02-14T09:51:32,873 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.mini_moderna3.moderna.data.base_pairs.stacking' is absent from the `packages` configuration. 2026-02-14T09:51:32,873 !! 2026-02-14T09:51:32,875 ******************************************************************************** 2026-02-14T09:51:32,875 ############################ 2026-02-14T09:51:32,876 # Package would be ignored # 2026-02-14T09:51:32,876 ############################ 2026-02-14T09:51:32,877 Python recognizes 'rna_tools.tools.mini_moderna3.moderna.data.base_pairs.stacking' as an importable package[^1], 2026-02-14T09:51:32,878 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:32,879 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:32,879 package, please make sure that 'rna_tools.tools.mini_moderna3.moderna.data.base_pairs.stacking' is explicitly added 2026-02-14T09:51:32,880 to the `packages` configuration field. 2026-02-14T09:51:32,881 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:32,882 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:32,883 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:32,884 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:32,885 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:32,886 If you don't want 'rna_tools.tools.mini_moderna3.moderna.data.base_pairs.stacking' to be distributed and are 2026-02-14T09:51:32,886 already explicitly excluding 'rna_tools.tools.mini_moderna3.moderna.data.base_pairs.stacking' via 2026-02-14T09:51:32,887 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:32,888 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:32,888 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:32,889 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:32,891 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:32,893 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:32,893 even if it does not contain any `.py` files. 2026-02-14T09:51:32,894 On the other hand, currently there is no concept of package data 2026-02-14T09:51:32,894 directory, all directories are treated like packages. 2026-02-14T09:51:32,895 ******************************************************************************** 2026-02-14T09:51:32,896 !! 2026-02-14T09:51:32,896 check.warn(importable) 2026-02-14T09:51:32,896 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.mini_moderna3.moderna.data.modification_fragments' is absent from the `packages` configuration. 2026-02-14T09:51:32,897 !! 2026-02-14T09:51:32,898 ******************************************************************************** 2026-02-14T09:51:32,898 ############################ 2026-02-14T09:51:32,899 # Package would be ignored # 2026-02-14T09:51:32,899 ############################ 2026-02-14T09:51:32,900 Python recognizes 'rna_tools.tools.mini_moderna3.moderna.data.modification_fragments' as an importable package[^1], 2026-02-14T09:51:32,900 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:32,902 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:32,902 package, please make sure that 'rna_tools.tools.mini_moderna3.moderna.data.modification_fragments' is explicitly added 2026-02-14T09:51:32,903 to the `packages` configuration field. 2026-02-14T09:51:32,904 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:32,905 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:32,905 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:32,906 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:32,907 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:32,908 If you don't want 'rna_tools.tools.mini_moderna3.moderna.data.modification_fragments' to be distributed and are 2026-02-14T09:51:32,909 already explicitly excluding 'rna_tools.tools.mini_moderna3.moderna.data.modification_fragments' via 2026-02-14T09:51:32,910 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:32,910 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:32,911 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:32,912 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:32,913 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:32,915 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:32,915 even if it does not contain any `.py` files. 2026-02-14T09:51:32,916 On the other hand, currently there is no concept of package data 2026-02-14T09:51:32,916 directory, all directories are treated like packages. 2026-02-14T09:51:32,917 ******************************************************************************** 2026-02-14T09:51:32,918 !! 2026-02-14T09:51:32,918 check.warn(importable) 2026-02-14T09:51:32,919 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.mini_moderna3.moderna.data.standard_bases' is absent from the `packages` configuration. 2026-02-14T09:51:32,920 !! 2026-02-14T09:51:32,921 ******************************************************************************** 2026-02-14T09:51:32,922 ############################ 2026-02-14T09:51:32,923 # Package would be ignored # 2026-02-14T09:51:32,923 ############################ 2026-02-14T09:51:32,923 Python recognizes 'rna_tools.tools.mini_moderna3.moderna.data.standard_bases' as an importable package[^1], 2026-02-14T09:51:32,924 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:32,925 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:32,925 package, please make sure that 'rna_tools.tools.mini_moderna3.moderna.data.standard_bases' is explicitly added 2026-02-14T09:51:32,926 to the `packages` configuration field. 2026-02-14T09:51:32,927 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:32,927 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:32,927 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:32,928 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:32,929 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:32,930 If you don't want 'rna_tools.tools.mini_moderna3.moderna.data.standard_bases' to be distributed and are 2026-02-14T09:51:32,931 already explicitly excluding 'rna_tools.tools.mini_moderna3.moderna.data.standard_bases' via 2026-02-14T09:51:32,931 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:32,932 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:32,932 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:32,933 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:32,935 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:32,937 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:32,937 even if it does not contain any `.py` files. 2026-02-14T09:51:32,938 On the other hand, currently there is no concept of package data 2026-02-14T09:51:32,939 directory, all directories are treated like packages. 2026-02-14T09:51:32,939 ******************************************************************************** 2026-02-14T09:51:32,940 !! 2026-02-14T09:51:32,941 check.warn(importable) 2026-02-14T09:51:32,942 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.mq.FARFAR2.test_output' is absent from the `packages` configuration. 2026-02-14T09:51:32,942 !! 2026-02-14T09:51:32,943 ******************************************************************************** 2026-02-14T09:51:32,944 ############################ 2026-02-14T09:51:32,944 # Package would be ignored # 2026-02-14T09:51:32,945 ############################ 2026-02-14T09:51:32,946 Python recognizes 'rna_tools.tools.mq.FARFAR2.test_output' as an importable package[^1], 2026-02-14T09:51:32,946 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:32,947 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:32,948 package, please make sure that 'rna_tools.tools.mq.FARFAR2.test_output' is explicitly added 2026-02-14T09:51:32,948 to the `packages` configuration field. 2026-02-14T09:51:32,949 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:32,949 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:32,950 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:32,951 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:32,952 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:32,953 If you don't want 'rna_tools.tools.mq.FARFAR2.test_output' to be distributed and are 2026-02-14T09:51:32,953 already explicitly excluding 'rna_tools.tools.mq.FARFAR2.test_output' via 2026-02-14T09:51:32,954 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:32,954 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:32,954 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:32,955 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:32,956 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:32,957 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:32,957 even if it does not contain any `.py` files. 2026-02-14T09:51:32,957 On the other hand, currently there is no concept of package data 2026-02-14T09:51:32,958 directory, all directories are treated like packages. 2026-02-14T09:51:32,958 ******************************************************************************** 2026-02-14T09:51:32,959 !! 2026-02-14T09:51:32,959 check.warn(importable) 2026-02-14T09:51:32,960 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.mq.FARNA.test_output' is absent from the `packages` configuration. 2026-02-14T09:51:32,960 !! 2026-02-14T09:51:32,961 ******************************************************************************** 2026-02-14T09:51:32,961 ############################ 2026-02-14T09:51:32,962 # Package would be ignored # 2026-02-14T09:51:32,962 ############################ 2026-02-14T09:51:32,963 Python recognizes 'rna_tools.tools.mq.FARNA.test_output' as an importable package[^1], 2026-02-14T09:51:32,963 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:32,965 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:32,965 package, please make sure that 'rna_tools.tools.mq.FARNA.test_output' is explicitly added 2026-02-14T09:51:32,966 to the `packages` configuration field. 2026-02-14T09:51:32,967 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:32,967 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:32,968 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:32,969 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:32,970 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:32,970 If you don't want 'rna_tools.tools.mq.FARNA.test_output' to be distributed and are 2026-02-14T09:51:32,971 already explicitly excluding 'rna_tools.tools.mq.FARNA.test_output' via 2026-02-14T09:51:32,971 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:32,972 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:32,972 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:32,973 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:32,974 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:32,976 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:32,976 even if it does not contain any `.py` files. 2026-02-14T09:51:32,977 On the other hand, currently there is no concept of package data 2026-02-14T09:51:32,978 directory, all directories are treated like packages. 2026-02-14T09:51:32,979 ******************************************************************************** 2026-02-14T09:51:32,979 !! 2026-02-14T09:51:32,980 check.warn(importable) 2026-02-14T09:51:32,980 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.mq.RNAkb.test_data' is absent from the `packages` configuration. 2026-02-14T09:51:32,981 !! 2026-02-14T09:51:32,981 ******************************************************************************** 2026-02-14T09:51:32,982 ############################ 2026-02-14T09:51:32,982 # Package would be ignored # 2026-02-14T09:51:32,982 ############################ 2026-02-14T09:51:32,983 Python recognizes 'rna_tools.tools.mq.RNAkb.test_data' as an importable package[^1], 2026-02-14T09:51:32,983 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:32,984 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:32,984 package, please make sure that 'rna_tools.tools.mq.RNAkb.test_data' is explicitly added 2026-02-14T09:51:32,985 to the `packages` configuration field. 2026-02-14T09:51:32,985 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:32,986 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:32,986 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:32,987 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:32,988 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:32,989 If you don't want 'rna_tools.tools.mq.RNAkb.test_data' to be distributed and are 2026-02-14T09:51:32,990 already explicitly excluding 'rna_tools.tools.mq.RNAkb.test_data' via 2026-02-14T09:51:32,990 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:32,991 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:32,991 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:32,992 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:32,994 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:32,995 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:32,996 even if it does not contain any `.py` files. 2026-02-14T09:51:32,996 On the other hand, currently there is no concept of package data 2026-02-14T09:51:32,997 directory, all directories are treated like packages. 2026-02-14T09:51:32,997 ******************************************************************************** 2026-02-14T09:51:32,998 !! 2026-02-14T09:51:32,999 check.warn(importable) 2026-02-14T09:51:32,999 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.mq.SimRNA.test' is absent from the `packages` configuration. 2026-02-14T09:51:33,000 !! 2026-02-14T09:51:33,001 ******************************************************************************** 2026-02-14T09:51:33,001 ############################ 2026-02-14T09:51:33,002 # Package would be ignored # 2026-02-14T09:51:33,002 ############################ 2026-02-14T09:51:33,003 Python recognizes 'rna_tools.tools.mq.SimRNA.test' as an importable package[^1], 2026-02-14T09:51:33,003 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,004 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,005 package, please make sure that 'rna_tools.tools.mq.SimRNA.test' is explicitly added 2026-02-14T09:51:33,006 to the `packages` configuration field. 2026-02-14T09:51:33,006 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,007 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,007 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,008 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,008 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,009 If you don't want 'rna_tools.tools.mq.SimRNA.test' to be distributed and are 2026-02-14T09:51:33,009 already explicitly excluding 'rna_tools.tools.mq.SimRNA.test' via 2026-02-14T09:51:33,010 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,010 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,010 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,011 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,012 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,013 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,013 even if it does not contain any `.py` files. 2026-02-14T09:51:33,014 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,014 directory, all directories are treated like packages. 2026-02-14T09:51:33,015 ******************************************************************************** 2026-02-14T09:51:33,016 !! 2026-02-14T09:51:33,016 check.warn(importable) 2026-02-14T09:51:33,017 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.mq.eSCORE.test' is absent from the `packages` configuration. 2026-02-14T09:51:33,018 !! 2026-02-14T09:51:33,019 ******************************************************************************** 2026-02-14T09:51:33,019 ############################ 2026-02-14T09:51:33,020 # Package would be ignored # 2026-02-14T09:51:33,020 ############################ 2026-02-14T09:51:33,021 Python recognizes 'rna_tools.tools.mq.eSCORE.test' as an importable package[^1], 2026-02-14T09:51:33,021 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,022 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,023 package, please make sure that 'rna_tools.tools.mq.eSCORE.test' is explicitly added 2026-02-14T09:51:33,023 to the `packages` configuration field. 2026-02-14T09:51:33,024 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,024 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,025 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,026 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,027 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,028 If you don't want 'rna_tools.tools.mq.eSCORE.test' to be distributed and are 2026-02-14T09:51:33,028 already explicitly excluding 'rna_tools.tools.mq.eSCORE.test' via 2026-02-14T09:51:33,029 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,029 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,030 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,031 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,032 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,033 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,033 even if it does not contain any `.py` files. 2026-02-14T09:51:33,034 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,034 directory, all directories are treated like packages. 2026-02-14T09:51:33,035 ******************************************************************************** 2026-02-14T09:51:33,035 !! 2026-02-14T09:51:33,036 check.warn(importable) 2026-02-14T09:51:33,036 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.mq.test' is absent from the `packages` configuration. 2026-02-14T09:51:33,036 !! 2026-02-14T09:51:33,037 ******************************************************************************** 2026-02-14T09:51:33,037 ############################ 2026-02-14T09:51:33,038 # Package would be ignored # 2026-02-14T09:51:33,038 ############################ 2026-02-14T09:51:33,039 Python recognizes 'rna_tools.tools.mq.test' as an importable package[^1], 2026-02-14T09:51:33,039 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,040 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,041 package, please make sure that 'rna_tools.tools.mq.test' is explicitly added 2026-02-14T09:51:33,041 to the `packages` configuration field. 2026-02-14T09:51:33,042 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,043 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,043 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,044 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,046 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,047 If you don't want 'rna_tools.tools.mq.test' to be distributed and are 2026-02-14T09:51:33,047 already explicitly excluding 'rna_tools.tools.mq.test' via 2026-02-14T09:51:33,048 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,049 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,049 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,050 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,051 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,053 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,053 even if it does not contain any `.py` files. 2026-02-14T09:51:33,054 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,054 directory, all directories are treated like packages. 2026-02-14T09:51:33,055 ******************************************************************************** 2026-02-14T09:51:33,056 !! 2026-02-14T09:51:33,056 check.warn(importable) 2026-02-14T09:51:33,057 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.mq.tmp' is absent from the `packages` configuration. 2026-02-14T09:51:33,057 !! 2026-02-14T09:51:33,059 ******************************************************************************** 2026-02-14T09:51:33,059 ############################ 2026-02-14T09:51:33,060 # Package would be ignored # 2026-02-14T09:51:33,060 ############################ 2026-02-14T09:51:33,061 Python recognizes 'rna_tools.tools.mq.tmp' as an importable package[^1], 2026-02-14T09:51:33,061 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,062 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,062 package, please make sure that 'rna_tools.tools.mq.tmp' is explicitly added 2026-02-14T09:51:33,062 to the `packages` configuration field. 2026-02-14T09:51:33,063 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,063 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,064 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,064 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,065 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,066 If you don't want 'rna_tools.tools.mq.tmp' to be distributed and are 2026-02-14T09:51:33,066 already explicitly excluding 'rna_tools.tools.mq.tmp' via 2026-02-14T09:51:33,066 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,067 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,067 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,068 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,069 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,071 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,071 even if it does not contain any `.py` files. 2026-02-14T09:51:33,072 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,073 directory, all directories are treated like packages. 2026-02-14T09:51:33,073 ******************************************************************************** 2026-02-14T09:51:33,074 !! 2026-02-14T09:51:33,075 check.warn(importable) 2026-02-14T09:51:33,075 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.pdbs_measure_atom_dists.test_data' is absent from the `packages` configuration. 2026-02-14T09:51:33,076 !! 2026-02-14T09:51:33,077 ******************************************************************************** 2026-02-14T09:51:33,077 ############################ 2026-02-14T09:51:33,078 # Package would be ignored # 2026-02-14T09:51:33,078 ############################ 2026-02-14T09:51:33,079 Python recognizes 'rna_tools.tools.pdbs_measure_atom_dists.test_data' as an importable package[^1], 2026-02-14T09:51:33,079 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,080 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,081 package, please make sure that 'rna_tools.tools.pdbs_measure_atom_dists.test_data' is explicitly added 2026-02-14T09:51:33,081 to the `packages` configuration field. 2026-02-14T09:51:33,082 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,083 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,083 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,084 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,086 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,087 If you don't want 'rna_tools.tools.pdbs_measure_atom_dists.test_data' to be distributed and are 2026-02-14T09:51:33,087 already explicitly excluding 'rna_tools.tools.pdbs_measure_atom_dists.test_data' via 2026-02-14T09:51:33,087 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,088 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,088 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,089 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,090 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,091 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,092 even if it does not contain any `.py` files. 2026-02-14T09:51:33,092 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,093 directory, all directories are treated like packages. 2026-02-14T09:51:33,093 ******************************************************************************** 2026-02-14T09:51:33,094 !! 2026-02-14T09:51:33,094 check.warn(importable) 2026-02-14T09:51:33,094 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.plotting.test_data' is absent from the `packages` configuration. 2026-02-14T09:51:33,095 !! 2026-02-14T09:51:33,096 ******************************************************************************** 2026-02-14T09:51:33,096 ############################ 2026-02-14T09:51:33,097 # Package would be ignored # 2026-02-14T09:51:33,097 ############################ 2026-02-14T09:51:33,098 Python recognizes 'rna_tools.tools.plotting.test_data' as an importable package[^1], 2026-02-14T09:51:33,098 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,100 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,100 package, please make sure that 'rna_tools.tools.plotting.test_data' is explicitly added 2026-02-14T09:51:33,101 to the `packages` configuration field. 2026-02-14T09:51:33,102 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,102 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,103 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,104 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,104 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,105 If you don't want 'rna_tools.tools.plotting.test_data' to be distributed and are 2026-02-14T09:51:33,106 already explicitly excluding 'rna_tools.tools.plotting.test_data' via 2026-02-14T09:51:33,106 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,107 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,107 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,108 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,109 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,111 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,111 even if it does not contain any `.py` files. 2026-02-14T09:51:33,112 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,112 directory, all directories are treated like packages. 2026-02-14T09:51:33,113 ******************************************************************************** 2026-02-14T09:51:33,114 !! 2026-02-14T09:51:33,114 check.warn(importable) 2026-02-14T09:51:33,115 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.proteins' is absent from the `packages` configuration. 2026-02-14T09:51:33,115 !! 2026-02-14T09:51:33,116 ******************************************************************************** 2026-02-14T09:51:33,116 ############################ 2026-02-14T09:51:33,117 # Package would be ignored # 2026-02-14T09:51:33,117 ############################ 2026-02-14T09:51:33,118 Python recognizes 'rna_tools.tools.proteins' as an importable package[^1], 2026-02-14T09:51:33,118 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,119 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,119 package, please make sure that 'rna_tools.tools.proteins' is explicitly added 2026-02-14T09:51:33,119 to the `packages` configuration field. 2026-02-14T09:51:33,120 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,121 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,121 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,122 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,123 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,124 If you don't want 'rna_tools.tools.proteins' to be distributed and are 2026-02-14T09:51:33,125 already explicitly excluding 'rna_tools.tools.proteins' via 2026-02-14T09:51:33,125 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,126 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,127 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,128 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,129 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,131 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,131 even if it does not contain any `.py` files. 2026-02-14T09:51:33,132 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,133 directory, all directories are treated like packages. 2026-02-14T09:51:33,133 ******************************************************************************** 2026-02-14T09:51:33,134 !! 2026-02-14T09:51:33,134 check.warn(importable) 2026-02-14T09:51:33,135 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.pymol_color_by_conserv' is absent from the `packages` configuration. 2026-02-14T09:51:33,135 !! 2026-02-14T09:51:33,136 ******************************************************************************** 2026-02-14T09:51:33,137 ############################ 2026-02-14T09:51:33,137 # Package would be ignored # 2026-02-14T09:51:33,138 ############################ 2026-02-14T09:51:33,139 Python recognizes 'rna_tools.tools.pymol_color_by_conserv' as an importable package[^1], 2026-02-14T09:51:33,139 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,140 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,141 package, please make sure that 'rna_tools.tools.pymol_color_by_conserv' is explicitly added 2026-02-14T09:51:33,142 to the `packages` configuration field. 2026-02-14T09:51:33,142 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,143 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,143 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,144 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,145 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,145 If you don't want 'rna_tools.tools.pymol_color_by_conserv' to be distributed and are 2026-02-14T09:51:33,146 already explicitly excluding 'rna_tools.tools.pymol_color_by_conserv' via 2026-02-14T09:51:33,146 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,146 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,147 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,148 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,148 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,150 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,150 even if it does not contain any `.py` files. 2026-02-14T09:51:33,150 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,151 directory, all directories are treated like packages. 2026-02-14T09:51:33,151 ******************************************************************************** 2026-02-14T09:51:33,152 !! 2026-02-14T09:51:33,153 check.warn(importable) 2026-02-14T09:51:33,153 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.pymol_color_by_conserv.data.cwc15' is absent from the `packages` configuration. 2026-02-14T09:51:33,154 !! 2026-02-14T09:51:33,155 ******************************************************************************** 2026-02-14T09:51:33,155 ############################ 2026-02-14T09:51:33,156 # Package would be ignored # 2026-02-14T09:51:33,156 ############################ 2026-02-14T09:51:33,157 Python recognizes 'rna_tools.tools.pymol_color_by_conserv.data.cwc15' as an importable package[^1], 2026-02-14T09:51:33,157 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,158 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,159 package, please make sure that 'rna_tools.tools.pymol_color_by_conserv.data.cwc15' is explicitly added 2026-02-14T09:51:33,159 to the `packages` configuration field. 2026-02-14T09:51:33,160 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,161 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,161 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,162 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,163 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,164 If you don't want 'rna_tools.tools.pymol_color_by_conserv.data.cwc15' to be distributed and are 2026-02-14T09:51:33,164 already explicitly excluding 'rna_tools.tools.pymol_color_by_conserv.data.cwc15' via 2026-02-14T09:51:33,165 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,165 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,166 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,167 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,168 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,169 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,169 even if it does not contain any `.py` files. 2026-02-14T09:51:33,169 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,170 directory, all directories are treated like packages. 2026-02-14T09:51:33,170 ******************************************************************************** 2026-02-14T09:51:33,171 !! 2026-02-14T09:51:33,171 check.warn(importable) 2026-02-14T09:51:33,172 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.pymol_color_by_conserv.docs' is absent from the `packages` configuration. 2026-02-14T09:51:33,172 !! 2026-02-14T09:51:33,173 ******************************************************************************** 2026-02-14T09:51:33,173 ############################ 2026-02-14T09:51:33,174 # Package would be ignored # 2026-02-14T09:51:33,174 ############################ 2026-02-14T09:51:33,174 Python recognizes 'rna_tools.tools.pymol_color_by_conserv.docs' as an importable package[^1], 2026-02-14T09:51:33,175 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,176 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,176 package, please make sure that 'rna_tools.tools.pymol_color_by_conserv.docs' is explicitly added 2026-02-14T09:51:33,177 to the `packages` configuration field. 2026-02-14T09:51:33,178 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,178 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,178 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,179 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,180 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,181 If you don't want 'rna_tools.tools.pymol_color_by_conserv.docs' to be distributed and are 2026-02-14T09:51:33,182 already explicitly excluding 'rna_tools.tools.pymol_color_by_conserv.docs' via 2026-02-14T09:51:33,183 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,183 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,183 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,184 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,186 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,187 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,188 even if it does not contain any `.py` files. 2026-02-14T09:51:33,188 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,189 directory, all directories are treated like packages. 2026-02-14T09:51:33,189 ******************************************************************************** 2026-02-14T09:51:33,190 !! 2026-02-14T09:51:33,191 check.warn(importable) 2026-02-14T09:51:33,191 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.pymol_drawing.docs' is absent from the `packages` configuration. 2026-02-14T09:51:33,192 !! 2026-02-14T09:51:33,193 ******************************************************************************** 2026-02-14T09:51:33,194 ############################ 2026-02-14T09:51:33,194 # Package would be ignored # 2026-02-14T09:51:33,194 ############################ 2026-02-14T09:51:33,195 Python recognizes 'rna_tools.tools.pymol_drawing.docs' as an importable package[^1], 2026-02-14T09:51:33,195 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,196 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,196 package, please make sure that 'rna_tools.tools.pymol_drawing.docs' is explicitly added 2026-02-14T09:51:33,197 to the `packages` configuration field. 2026-02-14T09:51:33,198 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,198 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,199 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,199 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,200 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,201 If you don't want 'rna_tools.tools.pymol_drawing.docs' to be distributed and are 2026-02-14T09:51:33,202 already explicitly excluding 'rna_tools.tools.pymol_drawing.docs' via 2026-02-14T09:51:33,202 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,203 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,203 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,204 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,205 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,207 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,207 even if it does not contain any `.py` files. 2026-02-14T09:51:33,208 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,208 directory, all directories are treated like packages. 2026-02-14T09:51:33,209 ******************************************************************************** 2026-02-14T09:51:33,210 !! 2026-02-14T09:51:33,211 check.warn(importable) 2026-02-14T09:51:33,211 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.pymol_drawing.test_data' is absent from the `packages` configuration. 2026-02-14T09:51:33,211 !! 2026-02-14T09:51:33,212 ******************************************************************************** 2026-02-14T09:51:33,213 ############################ 2026-02-14T09:51:33,213 # Package would be ignored # 2026-02-14T09:51:33,214 ############################ 2026-02-14T09:51:33,214 Python recognizes 'rna_tools.tools.pymol_drawing.test_data' as an importable package[^1], 2026-02-14T09:51:33,215 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,216 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,216 package, please make sure that 'rna_tools.tools.pymol_drawing.test_data' is explicitly added 2026-02-14T09:51:33,217 to the `packages` configuration field. 2026-02-14T09:51:33,218 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,219 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,219 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,220 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,221 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,222 If you don't want 'rna_tools.tools.pymol_drawing.test_data' to be distributed and are 2026-02-14T09:51:33,222 already explicitly excluding 'rna_tools.tools.pymol_drawing.test_data' via 2026-02-14T09:51:33,223 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,223 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,223 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,224 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,225 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,226 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,227 even if it does not contain any `.py` files. 2026-02-14T09:51:33,227 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,227 directory, all directories are treated like packages. 2026-02-14T09:51:33,228 ******************************************************************************** 2026-02-14T09:51:33,229 !! 2026-02-14T09:51:33,229 check.warn(importable) 2026-02-14T09:51:33,230 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.pymol_preview_generator' is absent from the `packages` configuration. 2026-02-14T09:51:33,230 !! 2026-02-14T09:51:33,231 ******************************************************************************** 2026-02-14T09:51:33,231 ############################ 2026-02-14T09:51:33,232 # Package would be ignored # 2026-02-14T09:51:33,232 ############################ 2026-02-14T09:51:33,233 Python recognizes 'rna_tools.tools.pymol_preview_generator' as an importable package[^1], 2026-02-14T09:51:33,234 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,235 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,235 package, please make sure that 'rna_tools.tools.pymol_preview_generator' is explicitly added 2026-02-14T09:51:33,236 to the `packages` configuration field. 2026-02-14T09:51:33,237 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,238 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,238 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,239 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,240 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,241 If you don't want 'rna_tools.tools.pymol_preview_generator' to be distributed and are 2026-02-14T09:51:33,241 already explicitly excluding 'rna_tools.tools.pymol_preview_generator' via 2026-02-14T09:51:33,242 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,242 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,243 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,244 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,245 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,246 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,247 even if it does not contain any `.py` files. 2026-02-14T09:51:33,247 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,248 directory, all directories are treated like packages. 2026-02-14T09:51:33,248 ******************************************************************************** 2026-02-14T09:51:33,249 !! 2026-02-14T09:51:33,249 check.warn(importable) 2026-02-14T09:51:33,249 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.pymol_preview_generator.bash' is absent from the `packages` configuration. 2026-02-14T09:51:33,250 !! 2026-02-14T09:51:33,250 ******************************************************************************** 2026-02-14T09:51:33,251 ############################ 2026-02-14T09:51:33,251 # Package would be ignored # 2026-02-14T09:51:33,251 ############################ 2026-02-14T09:51:33,252 Python recognizes 'rna_tools.tools.pymol_preview_generator.bash' as an importable package[^1], 2026-02-14T09:51:33,252 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,253 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,253 package, please make sure that 'rna_tools.tools.pymol_preview_generator.bash' is explicitly added 2026-02-14T09:51:33,254 to the `packages` configuration field. 2026-02-14T09:51:33,255 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,255 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,256 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,257 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,258 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,259 If you don't want 'rna_tools.tools.pymol_preview_generator.bash' to be distributed and are 2026-02-14T09:51:33,259 already explicitly excluding 'rna_tools.tools.pymol_preview_generator.bash' via 2026-02-14T09:51:33,260 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,261 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,261 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,262 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,263 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,265 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,265 even if it does not contain any `.py` files. 2026-02-14T09:51:33,266 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,266 directory, all directories are treated like packages. 2026-02-14T09:51:33,267 ******************************************************************************** 2026-02-14T09:51:33,268 !! 2026-02-14T09:51:33,268 check.warn(importable) 2026-02-14T09:51:33,269 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.pymol_preview_generator.docs' is absent from the `packages` configuration. 2026-02-14T09:51:33,269 !! 2026-02-14T09:51:33,270 ******************************************************************************** 2026-02-14T09:51:33,271 ############################ 2026-02-14T09:51:33,272 # Package would be ignored # 2026-02-14T09:51:33,272 ############################ 2026-02-14T09:51:33,273 Python recognizes 'rna_tools.tools.pymol_preview_generator.docs' as an importable package[^1], 2026-02-14T09:51:33,274 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,275 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,275 package, please make sure that 'rna_tools.tools.pymol_preview_generator.docs' is explicitly added 2026-02-14T09:51:33,275 to the `packages` configuration field. 2026-02-14T09:51:33,276 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,276 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,277 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,277 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,278 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,279 If you don't want 'rna_tools.tools.pymol_preview_generator.docs' to be distributed and are 2026-02-14T09:51:33,279 already explicitly excluding 'rna_tools.tools.pymol_preview_generator.docs' via 2026-02-14T09:51:33,280 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,280 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,280 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,281 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,282 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,283 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,284 even if it does not contain any `.py` files. 2026-02-14T09:51:33,285 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,285 directory, all directories are treated like packages. 2026-02-14T09:51:33,286 ******************************************************************************** 2026-02-14T09:51:33,287 !! 2026-02-14T09:51:33,287 check.warn(importable) 2026-02-14T09:51:33,288 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.pymol_preview_generator.zsh' is absent from the `packages` configuration. 2026-02-14T09:51:33,289 !! 2026-02-14T09:51:33,290 ******************************************************************************** 2026-02-14T09:51:33,290 ############################ 2026-02-14T09:51:33,291 # Package would be ignored # 2026-02-14T09:51:33,291 ############################ 2026-02-14T09:51:33,292 Python recognizes 'rna_tools.tools.pymol_preview_generator.zsh' as an importable package[^1], 2026-02-14T09:51:33,292 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,293 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,294 package, please make sure that 'rna_tools.tools.pymol_preview_generator.zsh' is explicitly added 2026-02-14T09:51:33,294 to the `packages` configuration field. 2026-02-14T09:51:33,295 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,296 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,296 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,297 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,298 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,299 If you don't want 'rna_tools.tools.pymol_preview_generator.zsh' to be distributed and are 2026-02-14T09:51:33,300 already explicitly excluding 'rna_tools.tools.pymol_preview_generator.zsh' via 2026-02-14T09:51:33,301 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,301 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,302 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,302 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,303 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,304 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,305 even if it does not contain any `.py` files. 2026-02-14T09:51:33,305 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,305 directory, all directories are treated like packages. 2026-02-14T09:51:33,306 ******************************************************************************** 2026-02-14T09:51:33,307 !! 2026-02-14T09:51:33,307 check.warn(importable) 2026-02-14T09:51:33,307 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.renum_pdb_to_aln.test_data' is absent from the `packages` configuration. 2026-02-14T09:51:33,308 !! 2026-02-14T09:51:33,308 ******************************************************************************** 2026-02-14T09:51:33,309 ############################ 2026-02-14T09:51:33,309 # Package would be ignored # 2026-02-14T09:51:33,310 ############################ 2026-02-14T09:51:33,310 Python recognizes 'rna_tools.tools.renum_pdb_to_aln.test_data' as an importable package[^1], 2026-02-14T09:51:33,311 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,312 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,313 package, please make sure that 'rna_tools.tools.renum_pdb_to_aln.test_data' is explicitly added 2026-02-14T09:51:33,313 to the `packages` configuration field. 2026-02-14T09:51:33,315 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,315 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,316 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,317 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,318 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,319 If you don't want 'rna_tools.tools.renum_pdb_to_aln.test_data' to be distributed and are 2026-02-14T09:51:33,319 already explicitly excluding 'rna_tools.tools.renum_pdb_to_aln.test_data' via 2026-02-14T09:51:33,320 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,320 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,321 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,322 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,323 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,325 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,325 even if it does not contain any `.py` files. 2026-02-14T09:51:33,326 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,326 directory, all directories are treated like packages. 2026-02-14T09:51:33,327 ******************************************************************************** 2026-02-14T09:51:33,328 !! 2026-02-14T09:51:33,328 check.warn(importable) 2026-02-14T09:51:33,329 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_alignment.pngs' is absent from the `packages` configuration. 2026-02-14T09:51:33,329 !! 2026-02-14T09:51:33,330 ******************************************************************************** 2026-02-14T09:51:33,330 ############################ 2026-02-14T09:51:33,331 # Package would be ignored # 2026-02-14T09:51:33,331 ############################ 2026-02-14T09:51:33,331 Python recognizes 'rna_tools.tools.rna_alignment.pngs' as an importable package[^1], 2026-02-14T09:51:33,332 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,333 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,333 package, please make sure that 'rna_tools.tools.rna_alignment.pngs' is explicitly added 2026-02-14T09:51:33,333 to the `packages` configuration field. 2026-02-14T09:51:33,334 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,335 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,335 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,336 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,337 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,337 If you don't want 'rna_tools.tools.rna_alignment.pngs' to be distributed and are 2026-02-14T09:51:33,338 already explicitly excluding 'rna_tools.tools.rna_alignment.pngs' via 2026-02-14T09:51:33,338 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,339 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,339 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,340 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,341 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,343 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,343 even if it does not contain any `.py` files. 2026-02-14T09:51:33,344 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,345 directory, all directories are treated like packages. 2026-02-14T09:51:33,345 ******************************************************************************** 2026-02-14T09:51:33,346 !! 2026-02-14T09:51:33,347 check.warn(importable) 2026-02-14T09:51:33,347 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_alignment.test_data' is absent from the `packages` configuration. 2026-02-14T09:51:33,348 !! 2026-02-14T09:51:33,349 ******************************************************************************** 2026-02-14T09:51:33,349 ############################ 2026-02-14T09:51:33,350 # Package would be ignored # 2026-02-14T09:51:33,350 ############################ 2026-02-14T09:51:33,351 Python recognizes 'rna_tools.tools.rna_alignment.test_data' as an importable package[^1], 2026-02-14T09:51:33,351 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,353 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,353 package, please make sure that 'rna_tools.tools.rna_alignment.test_data' is explicitly added 2026-02-14T09:51:33,354 to the `packages` configuration field. 2026-02-14T09:51:33,355 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,356 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,356 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,357 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,357 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,358 If you don't want 'rna_tools.tools.rna_alignment.test_data' to be distributed and are 2026-02-14T09:51:33,358 already explicitly excluding 'rna_tools.tools.rna_alignment.test_data' via 2026-02-14T09:51:33,359 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,359 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,359 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,360 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,361 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,362 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,363 even if it does not contain any `.py` files. 2026-02-14T09:51:33,363 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,363 directory, all directories are treated like packages. 2026-02-14T09:51:33,364 ******************************************************************************** 2026-02-14T09:51:33,365 !! 2026-02-14T09:51:33,365 check.warn(importable) 2026-02-14T09:51:33,366 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_alignment.test_data.foldability' is absent from the `packages` configuration. 2026-02-14T09:51:33,366 !! 2026-02-14T09:51:33,367 ******************************************************************************** 2026-02-14T09:51:33,368 ############################ 2026-02-14T09:51:33,369 # Package would be ignored # 2026-02-14T09:51:33,369 ############################ 2026-02-14T09:51:33,369 Python recognizes 'rna_tools.tools.rna_alignment.test_data.foldability' as an importable package[^1], 2026-02-14T09:51:33,370 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,371 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,372 package, please make sure that 'rna_tools.tools.rna_alignment.test_data.foldability' is explicitly added 2026-02-14T09:51:33,372 to the `packages` configuration field. 2026-02-14T09:51:33,373 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,374 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,374 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,375 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,376 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,377 If you don't want 'rna_tools.tools.rna_alignment.test_data.foldability' to be distributed and are 2026-02-14T09:51:33,377 already explicitly excluding 'rna_tools.tools.rna_alignment.test_data.foldability' via 2026-02-14T09:51:33,378 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,378 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,379 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,380 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,381 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,382 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,382 even if it does not contain any `.py` files. 2026-02-14T09:51:33,383 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,383 directory, all directories are treated like packages. 2026-02-14T09:51:33,384 ******************************************************************************** 2026-02-14T09:51:33,384 !! 2026-02-14T09:51:33,385 check.warn(importable) 2026-02-14T09:51:33,385 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_alignment.test_data.rchie_test_files' is absent from the `packages` configuration. 2026-02-14T09:51:33,385 !! 2026-02-14T09:51:33,386 ******************************************************************************** 2026-02-14T09:51:33,387 ############################ 2026-02-14T09:51:33,387 # Package would be ignored # 2026-02-14T09:51:33,387 ############################ 2026-02-14T09:51:33,388 Python recognizes 'rna_tools.tools.rna_alignment.test_data.rchie_test_files' as an importable package[^1], 2026-02-14T09:51:33,388 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,389 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,390 package, please make sure that 'rna_tools.tools.rna_alignment.test_data.rchie_test_files' is explicitly added 2026-02-14T09:51:33,390 to the `packages` configuration field. 2026-02-14T09:51:33,391 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,392 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,393 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,394 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,395 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,396 If you don't want 'rna_tools.tools.rna_alignment.test_data.rchie_test_files' to be distributed and are 2026-02-14T09:51:33,397 already explicitly excluding 'rna_tools.tools.rna_alignment.test_data.rchie_test_files' via 2026-02-14T09:51:33,397 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,398 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,398 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,399 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,400 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,402 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,402 even if it does not contain any `.py` files. 2026-02-14T09:51:33,403 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,403 directory, all directories are treated like packages. 2026-02-14T09:51:33,404 ******************************************************************************** 2026-02-14T09:51:33,405 !! 2026-02-14T09:51:33,406 check.warn(importable) 2026-02-14T09:51:33,406 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_alignment.test_output' is absent from the `packages` configuration. 2026-02-14T09:51:33,407 !! 2026-02-14T09:51:33,408 ******************************************************************************** 2026-02-14T09:51:33,408 ############################ 2026-02-14T09:51:33,409 # Package would be ignored # 2026-02-14T09:51:33,409 ############################ 2026-02-14T09:51:33,409 Python recognizes 'rna_tools.tools.rna_alignment.test_output' as an importable package[^1], 2026-02-14T09:51:33,410 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,410 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,411 package, please make sure that 'rna_tools.tools.rna_alignment.test_output' is explicitly added 2026-02-14T09:51:33,411 to the `packages` configuration field. 2026-02-14T09:51:33,412 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,412 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,413 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,414 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,414 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,415 If you don't want 'rna_tools.tools.rna_alignment.test_output' to be distributed and are 2026-02-14T09:51:33,416 already explicitly excluding 'rna_tools.tools.rna_alignment.test_output' via 2026-02-14T09:51:33,416 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,417 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,417 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,418 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,419 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,421 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,421 even if it does not contain any `.py` files. 2026-02-14T09:51:33,422 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,422 directory, all directories are treated like packages. 2026-02-14T09:51:33,423 ******************************************************************************** 2026-02-14T09:51:33,424 !! 2026-02-14T09:51:33,425 check.warn(importable) 2026-02-14T09:51:33,425 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_alignment.utils.test_data' is absent from the `packages` configuration. 2026-02-14T09:51:33,426 !! 2026-02-14T09:51:33,426 ******************************************************************************** 2026-02-14T09:51:33,427 ############################ 2026-02-14T09:51:33,427 # Package would be ignored # 2026-02-14T09:51:33,428 ############################ 2026-02-14T09:51:33,428 Python recognizes 'rna_tools.tools.rna_alignment.utils.test_data' as an importable package[^1], 2026-02-14T09:51:33,429 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,430 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,431 package, please make sure that 'rna_tools.tools.rna_alignment.utils.test_data' is explicitly added 2026-02-14T09:51:33,431 to the `packages` configuration field. 2026-02-14T09:51:33,432 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,433 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,434 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,434 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,435 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,436 If you don't want 'rna_tools.tools.rna_alignment.utils.test_data' to be distributed and are 2026-02-14T09:51:33,436 already explicitly excluding 'rna_tools.tools.rna_alignment.utils.test_data' via 2026-02-14T09:51:33,437 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,437 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,437 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,438 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,439 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,440 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,440 even if it does not contain any `.py` files. 2026-02-14T09:51:33,441 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,441 directory, all directories are treated like packages. 2026-02-14T09:51:33,442 ******************************************************************************** 2026-02-14T09:51:33,443 !! 2026-02-14T09:51:33,443 check.warn(importable) 2026-02-14T09:51:33,444 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_binding_affinity' is absent from the `packages` configuration. 2026-02-14T09:51:33,444 !! 2026-02-14T09:51:33,445 ******************************************************************************** 2026-02-14T09:51:33,446 ############################ 2026-02-14T09:51:33,446 # Package would be ignored # 2026-02-14T09:51:33,447 ############################ 2026-02-14T09:51:33,448 Python recognizes 'rna_tools.tools.rna_binding_affinity' as an importable package[^1], 2026-02-14T09:51:33,448 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,449 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,450 package, please make sure that 'rna_tools.tools.rna_binding_affinity' is explicitly added 2026-02-14T09:51:33,451 to the `packages` configuration field. 2026-02-14T09:51:33,452 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,452 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,453 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,454 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,455 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,456 If you don't want 'rna_tools.tools.rna_binding_affinity' to be distributed and are 2026-02-14T09:51:33,457 already explicitly excluding 'rna_tools.tools.rna_binding_affinity' via 2026-02-14T09:51:33,457 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,457 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,458 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,459 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,460 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,462 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,463 even if it does not contain any `.py` files. 2026-02-14T09:51:33,463 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,463 directory, all directories are treated like packages. 2026-02-14T09:51:33,464 ******************************************************************************** 2026-02-14T09:51:33,464 !! 2026-02-14T09:51:33,465 check.warn(importable) 2026-02-14T09:51:33,465 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_evo_rmsd.test_data' is absent from the `packages` configuration. 2026-02-14T09:51:33,466 !! 2026-02-14T09:51:33,466 ******************************************************************************** 2026-02-14T09:51:33,467 ############################ 2026-02-14T09:51:33,467 # Package would be ignored # 2026-02-14T09:51:33,467 ############################ 2026-02-14T09:51:33,468 Python recognizes 'rna_tools.tools.rna_calc_evo_rmsd.test_data' as an importable package[^1], 2026-02-14T09:51:33,468 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,469 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,469 package, please make sure that 'rna_tools.tools.rna_calc_evo_rmsd.test_data' is explicitly added 2026-02-14T09:51:33,470 to the `packages` configuration field. 2026-02-14T09:51:33,471 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,471 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,472 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,473 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,474 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,476 If you don't want 'rna_tools.tools.rna_calc_evo_rmsd.test_data' to be distributed and are 2026-02-14T09:51:33,476 already explicitly excluding 'rna_tools.tools.rna_calc_evo_rmsd.test_data' via 2026-02-14T09:51:33,477 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,477 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,477 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,478 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,479 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,481 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,481 even if it does not contain any `.py` files. 2026-02-14T09:51:33,482 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,482 directory, all directories are treated like packages. 2026-02-14T09:51:33,483 ******************************************************************************** 2026-02-14T09:51:33,484 !! 2026-02-14T09:51:33,484 check.warn(importable) 2026-02-14T09:51:33,485 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_gdt' is absent from the `packages` configuration. 2026-02-14T09:51:33,485 !! 2026-02-14T09:51:33,487 ******************************************************************************** 2026-02-14T09:51:33,487 ############################ 2026-02-14T09:51:33,488 # Package would be ignored # 2026-02-14T09:51:33,488 ############################ 2026-02-14T09:51:33,489 Python recognizes 'rna_tools.tools.rna_calc_gdt' as an importable package[^1], 2026-02-14T09:51:33,489 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,490 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,491 package, please make sure that 'rna_tools.tools.rna_calc_gdt' is explicitly added 2026-02-14T09:51:33,491 to the `packages` configuration field. 2026-02-14T09:51:33,492 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,492 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,493 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,494 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,494 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,495 If you don't want 'rna_tools.tools.rna_calc_gdt' to be distributed and are 2026-02-14T09:51:33,496 already explicitly excluding 'rna_tools.tools.rna_calc_gdt' via 2026-02-14T09:51:33,496 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,497 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,497 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,498 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,499 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,500 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,501 even if it does not contain any `.py` files. 2026-02-14T09:51:33,501 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,502 directory, all directories are treated like packages. 2026-02-14T09:51:33,502 ******************************************************************************** 2026-02-14T09:51:33,504 !! 2026-02-14T09:51:33,504 check.warn(importable) 2026-02-14T09:51:33,505 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_hbonds' is absent from the `packages` configuration. 2026-02-14T09:51:33,505 !! 2026-02-14T09:51:33,506 ******************************************************************************** 2026-02-14T09:51:33,507 ############################ 2026-02-14T09:51:33,507 # Package would be ignored # 2026-02-14T09:51:33,508 ############################ 2026-02-14T09:51:33,508 Python recognizes 'rna_tools.tools.rna_calc_hbonds' as an importable package[^1], 2026-02-14T09:51:33,509 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,510 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,510 package, please make sure that 'rna_tools.tools.rna_calc_hbonds' is explicitly added 2026-02-14T09:51:33,511 to the `packages` configuration field. 2026-02-14T09:51:33,512 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,512 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,513 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,514 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,515 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,516 If you don't want 'rna_tools.tools.rna_calc_hbonds' to be distributed and are 2026-02-14T09:51:33,517 already explicitly excluding 'rna_tools.tools.rna_calc_hbonds' via 2026-02-14T09:51:33,518 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,518 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,518 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,519 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,520 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,521 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,521 even if it does not contain any `.py` files. 2026-02-14T09:51:33,521 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,522 directory, all directories are treated like packages. 2026-02-14T09:51:33,522 ******************************************************************************** 2026-02-14T09:51:33,523 !! 2026-02-14T09:51:33,523 check.warn(importable) 2026-02-14T09:51:33,524 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_hbonds.docs' is absent from the `packages` configuration. 2026-02-14T09:51:33,524 !! 2026-02-14T09:51:33,525 ******************************************************************************** 2026-02-14T09:51:33,526 ############################ 2026-02-14T09:51:33,526 # Package would be ignored # 2026-02-14T09:51:33,526 ############################ 2026-02-14T09:51:33,527 Python recognizes 'rna_tools.tools.rna_calc_hbonds.docs' as an importable package[^1], 2026-02-14T09:51:33,528 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,528 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,529 package, please make sure that 'rna_tools.tools.rna_calc_hbonds.docs' is explicitly added 2026-02-14T09:51:33,530 to the `packages` configuration field. 2026-02-14T09:51:33,531 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,531 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,532 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,533 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,534 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,535 If you don't want 'rna_tools.tools.rna_calc_hbonds.docs' to be distributed and are 2026-02-14T09:51:33,536 already explicitly excluding 'rna_tools.tools.rna_calc_hbonds.docs' via 2026-02-14T09:51:33,536 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,537 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,537 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,538 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,539 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,541 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,541 even if it does not contain any `.py` files. 2026-02-14T09:51:33,542 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,542 directory, all directories are treated like packages. 2026-02-14T09:51:33,543 ******************************************************************************** 2026-02-14T09:51:33,544 !! 2026-02-14T09:51:33,545 check.warn(importable) 2026-02-14T09:51:33,545 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_hbonds.test_data' is absent from the `packages` configuration. 2026-02-14T09:51:33,546 !! 2026-02-14T09:51:33,546 ******************************************************************************** 2026-02-14T09:51:33,547 ############################ 2026-02-14T09:51:33,547 # Package would be ignored # 2026-02-14T09:51:33,548 ############################ 2026-02-14T09:51:33,548 Python recognizes 'rna_tools.tools.rna_calc_hbonds.test_data' as an importable package[^1], 2026-02-14T09:51:33,549 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,550 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,550 package, please make sure that 'rna_tools.tools.rna_calc_hbonds.test_data' is explicitly added 2026-02-14T09:51:33,550 to the `packages` configuration field. 2026-02-14T09:51:33,551 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,552 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,552 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,553 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,554 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,555 If you don't want 'rna_tools.tools.rna_calc_hbonds.test_data' to be distributed and are 2026-02-14T09:51:33,555 already explicitly excluding 'rna_tools.tools.rna_calc_hbonds.test_data' via 2026-02-14T09:51:33,556 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,556 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,557 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,558 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,559 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,561 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,561 even if it does not contain any `.py` files. 2026-02-14T09:51:33,561 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,562 directory, all directories are treated like packages. 2026-02-14T09:51:33,563 ******************************************************************************** 2026-02-14T09:51:33,563 !! 2026-02-14T09:51:33,564 check.warn(importable) 2026-02-14T09:51:33,565 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_inf.doc' is absent from the `packages` configuration. 2026-02-14T09:51:33,565 !! 2026-02-14T09:51:33,566 ******************************************************************************** 2026-02-14T09:51:33,567 ############################ 2026-02-14T09:51:33,567 # Package would be ignored # 2026-02-14T09:51:33,568 ############################ 2026-02-14T09:51:33,568 Python recognizes 'rna_tools.tools.rna_calc_inf.doc' as an importable package[^1], 2026-02-14T09:51:33,569 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,570 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,571 package, please make sure that 'rna_tools.tools.rna_calc_inf.doc' is explicitly added 2026-02-14T09:51:33,571 to the `packages` configuration field. 2026-02-14T09:51:33,573 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,573 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,574 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,574 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,575 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,576 If you don't want 'rna_tools.tools.rna_calc_inf.doc' to be distributed and are 2026-02-14T09:51:33,576 already explicitly excluding 'rna_tools.tools.rna_calc_inf.doc' via 2026-02-14T09:51:33,577 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,577 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,578 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,578 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,579 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,580 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,581 even if it does not contain any `.py` files. 2026-02-14T09:51:33,581 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,582 directory, all directories are treated like packages. 2026-02-14T09:51:33,582 ******************************************************************************** 2026-02-14T09:51:33,583 !! 2026-02-14T09:51:33,583 check.warn(importable) 2026-02-14T09:51:33,584 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_inf.test_data' is absent from the `packages` configuration. 2026-02-14T09:51:33,585 !! 2026-02-14T09:51:33,586 ******************************************************************************** 2026-02-14T09:51:33,586 ############################ 2026-02-14T09:51:33,587 # Package would be ignored # 2026-02-14T09:51:33,587 ############################ 2026-02-14T09:51:33,588 Python recognizes 'rna_tools.tools.rna_calc_inf.test_data' as an importable package[^1], 2026-02-14T09:51:33,589 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,590 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,590 package, please make sure that 'rna_tools.tools.rna_calc_inf.test_data' is explicitly added 2026-02-14T09:51:33,591 to the `packages` configuration field. 2026-02-14T09:51:33,592 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,592 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,593 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,593 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,594 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,595 If you don't want 'rna_tools.tools.rna_calc_inf.test_data' to be distributed and are 2026-02-14T09:51:33,596 already explicitly excluding 'rna_tools.tools.rna_calc_inf.test_data' via 2026-02-14T09:51:33,596 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,597 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,598 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,599 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,600 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,601 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,602 even if it does not contain any `.py` files. 2026-02-14T09:51:33,602 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,602 directory, all directories are treated like packages. 2026-02-14T09:51:33,603 ******************************************************************************** 2026-02-14T09:51:33,603 !! 2026-02-14T09:51:33,604 check.warn(importable) 2026-02-14T09:51:33,604 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_inf.test_data.rp13' is absent from the `packages` configuration. 2026-02-14T09:51:33,605 !! 2026-02-14T09:51:33,606 ******************************************************************************** 2026-02-14T09:51:33,606 ############################ 2026-02-14T09:51:33,606 # Package would be ignored # 2026-02-14T09:51:33,607 ############################ 2026-02-14T09:51:33,607 Python recognizes 'rna_tools.tools.rna_calc_inf.test_data.rp13' as an importable package[^1], 2026-02-14T09:51:33,607 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,608 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,609 package, please make sure that 'rna_tools.tools.rna_calc_inf.test_data.rp13' is explicitly added 2026-02-14T09:51:33,609 to the `packages` configuration field. 2026-02-14T09:51:33,610 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,611 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,611 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,612 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,613 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,615 If you don't want 'rna_tools.tools.rna_calc_inf.test_data.rp13' to be distributed and are 2026-02-14T09:51:33,615 already explicitly excluding 'rna_tools.tools.rna_calc_inf.test_data.rp13' via 2026-02-14T09:51:33,616 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,616 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,617 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,618 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,619 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,620 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,621 even if it does not contain any `.py` files. 2026-02-14T09:51:33,621 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,622 directory, all directories are treated like packages. 2026-02-14T09:51:33,622 ******************************************************************************** 2026-02-14T09:51:33,623 !! 2026-02-14T09:51:33,624 check.warn(importable) 2026-02-14T09:51:33,624 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_rmsd.lib.rmsd.examples' is absent from the `packages` configuration. 2026-02-14T09:51:33,625 !! 2026-02-14T09:51:33,626 ******************************************************************************** 2026-02-14T09:51:33,627 ############################ 2026-02-14T09:51:33,628 # Package would be ignored # 2026-02-14T09:51:33,628 ############################ 2026-02-14T09:51:33,628 Python recognizes 'rna_tools.tools.rna_calc_rmsd.lib.rmsd.examples' as an importable package[^1], 2026-02-14T09:51:33,629 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,629 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,630 package, please make sure that 'rna_tools.tools.rna_calc_rmsd.lib.rmsd.examples' is explicitly added 2026-02-14T09:51:33,630 to the `packages` configuration field. 2026-02-14T09:51:33,631 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,631 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,632 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,632 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,633 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,634 If you don't want 'rna_tools.tools.rna_calc_rmsd.lib.rmsd.examples' to be distributed and are 2026-02-14T09:51:33,635 already explicitly excluding 'rna_tools.tools.rna_calc_rmsd.lib.rmsd.examples' via 2026-02-14T09:51:33,635 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,635 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,636 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,637 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,638 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,640 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,641 even if it does not contain any `.py` files. 2026-02-14T09:51:33,641 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,642 directory, all directories are treated like packages. 2026-02-14T09:51:33,642 ******************************************************************************** 2026-02-14T09:51:33,644 !! 2026-02-14T09:51:33,644 check.warn(importable) 2026-02-14T09:51:33,645 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_rmsd.test_data' is absent from the `packages` configuration. 2026-02-14T09:51:33,645 !! 2026-02-14T09:51:33,646 ******************************************************************************** 2026-02-14T09:51:33,647 ############################ 2026-02-14T09:51:33,647 # Package would be ignored # 2026-02-14T09:51:33,648 ############################ 2026-02-14T09:51:33,648 Python recognizes 'rna_tools.tools.rna_calc_rmsd.test_data' as an importable package[^1], 2026-02-14T09:51:33,649 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,649 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,650 package, please make sure that 'rna_tools.tools.rna_calc_rmsd.test_data' is explicitly added 2026-02-14T09:51:33,650 to the `packages` configuration field. 2026-02-14T09:51:33,652 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,652 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,653 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,654 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,655 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,656 If you don't want 'rna_tools.tools.rna_calc_rmsd.test_data' to be distributed and are 2026-02-14T09:51:33,656 already explicitly excluding 'rna_tools.tools.rna_calc_rmsd.test_data' via 2026-02-14T09:51:33,657 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,657 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,657 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,658 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,659 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,660 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,660 even if it does not contain any `.py` files. 2026-02-14T09:51:33,661 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,661 directory, all directories are treated like packages. 2026-02-14T09:51:33,662 ******************************************************************************** 2026-02-14T09:51:33,662 !! 2026-02-14T09:51:33,663 check.warn(importable) 2026-02-14T09:51:33,663 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_rmsd.test_data.crops' is absent from the `packages` configuration. 2026-02-14T09:51:33,664 !! 2026-02-14T09:51:33,665 ******************************************************************************** 2026-02-14T09:51:33,665 ############################ 2026-02-14T09:51:33,666 # Package would be ignored # 2026-02-14T09:51:33,666 ############################ 2026-02-14T09:51:33,667 Python recognizes 'rna_tools.tools.rna_calc_rmsd.test_data.crops' as an importable package[^1], 2026-02-14T09:51:33,668 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,669 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,669 package, please make sure that 'rna_tools.tools.rna_calc_rmsd.test_data.crops' is explicitly added 2026-02-14T09:51:33,670 to the `packages` configuration field. 2026-02-14T09:51:33,671 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,672 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,673 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,674 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,675 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,676 If you don't want 'rna_tools.tools.rna_calc_rmsd.test_data.crops' to be distributed and are 2026-02-14T09:51:33,676 already explicitly excluding 'rna_tools.tools.rna_calc_rmsd.test_data.crops' via 2026-02-14T09:51:33,677 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,677 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,678 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,679 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,680 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,682 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,682 even if it does not contain any `.py` files. 2026-02-14T09:51:33,683 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,684 directory, all directories are treated like packages. 2026-02-14T09:51:33,684 ******************************************************************************** 2026-02-14T09:51:33,685 !! 2026-02-14T09:51:33,685 check.warn(importable) 2026-02-14T09:51:33,685 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_rmsd.test_data.pistol' is absent from the `packages` configuration. 2026-02-14T09:51:33,686 !! 2026-02-14T09:51:33,686 ******************************************************************************** 2026-02-14T09:51:33,687 ############################ 2026-02-14T09:51:33,687 # Package would be ignored # 2026-02-14T09:51:33,687 ############################ 2026-02-14T09:51:33,688 Python recognizes 'rna_tools.tools.rna_calc_rmsd.test_data.pistol' as an importable package[^1], 2026-02-14T09:51:33,688 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,689 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,689 package, please make sure that 'rna_tools.tools.rna_calc_rmsd.test_data.pistol' is explicitly added 2026-02-14T09:51:33,690 to the `packages` configuration field. 2026-02-14T09:51:33,690 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,691 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,691 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,692 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,694 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,695 If you don't want 'rna_tools.tools.rna_calc_rmsd.test_data.pistol' to be distributed and are 2026-02-14T09:51:33,695 already explicitly excluding 'rna_tools.tools.rna_calc_rmsd.test_data.pistol' via 2026-02-14T09:51:33,696 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,696 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,696 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,697 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,699 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,700 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,701 even if it does not contain any `.py` files. 2026-02-14T09:51:33,701 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,702 directory, all directories are treated like packages. 2026-02-14T09:51:33,702 ******************************************************************************** 2026-02-14T09:51:33,703 !! 2026-02-14T09:51:33,703 check.warn(importable) 2026-02-14T09:51:33,704 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_rmsd.test_data.pistol.clusters' is absent from the `packages` configuration. 2026-02-14T09:51:33,704 !! 2026-02-14T09:51:33,705 ******************************************************************************** 2026-02-14T09:51:33,706 ############################ 2026-02-14T09:51:33,706 # Package would be ignored # 2026-02-14T09:51:33,707 ############################ 2026-02-14T09:51:33,708 Python recognizes 'rna_tools.tools.rna_calc_rmsd.test_data.pistol.clusters' as an importable package[^1], 2026-02-14T09:51:33,708 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,710 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,710 package, please make sure that 'rna_tools.tools.rna_calc_rmsd.test_data.pistol.clusters' is explicitly added 2026-02-14T09:51:33,710 to the `packages` configuration field. 2026-02-14T09:51:33,711 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,712 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,712 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,713 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,714 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,715 If you don't want 'rna_tools.tools.rna_calc_rmsd.test_data.pistol.clusters' to be distributed and are 2026-02-14T09:51:33,716 already explicitly excluding 'rna_tools.tools.rna_calc_rmsd.test_data.pistol.clusters' via 2026-02-14T09:51:33,716 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,717 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,717 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,718 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,719 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,721 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,721 even if it does not contain any `.py` files. 2026-02-14T09:51:33,722 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,723 directory, all directories are treated like packages. 2026-02-14T09:51:33,723 ******************************************************************************** 2026-02-14T09:51:33,724 !! 2026-02-14T09:51:33,725 check.warn(importable) 2026-02-14T09:51:33,725 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_rmsd.test_data.ways' is absent from the `packages` configuration. 2026-02-14T09:51:33,726 !! 2026-02-14T09:51:33,727 ******************************************************************************** 2026-02-14T09:51:33,728 ############################ 2026-02-14T09:51:33,728 # Package would be ignored # 2026-02-14T09:51:33,729 ############################ 2026-02-14T09:51:33,729 Python recognizes 'rna_tools.tools.rna_calc_rmsd.test_data.ways' as an importable package[^1], 2026-02-14T09:51:33,730 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,731 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,731 package, please make sure that 'rna_tools.tools.rna_calc_rmsd.test_data.ways' is explicitly added 2026-02-14T09:51:33,732 to the `packages` configuration field. 2026-02-14T09:51:33,733 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,733 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,734 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,735 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,736 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,737 If you don't want 'rna_tools.tools.rna_calc_rmsd.test_data.ways' to be distributed and are 2026-02-14T09:51:33,738 already explicitly excluding 'rna_tools.tools.rna_calc_rmsd.test_data.ways' via 2026-02-14T09:51:33,739 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,739 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,739 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,740 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,741 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,742 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,742 even if it does not contain any `.py` files. 2026-02-14T09:51:33,742 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,743 directory, all directories are treated like packages. 2026-02-14T09:51:33,743 ******************************************************************************** 2026-02-14T09:51:33,744 !! 2026-02-14T09:51:33,744 check.warn(importable) 2026-02-14T09:51:33,745 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_rmsd.test_output' is absent from the `packages` configuration. 2026-02-14T09:51:33,745 !! 2026-02-14T09:51:33,746 ******************************************************************************** 2026-02-14T09:51:33,746 ############################ 2026-02-14T09:51:33,747 # Package would be ignored # 2026-02-14T09:51:33,747 ############################ 2026-02-14T09:51:33,748 Python recognizes 'rna_tools.tools.rna_calc_rmsd.test_output' as an importable package[^1], 2026-02-14T09:51:33,748 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,750 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,750 package, please make sure that 'rna_tools.tools.rna_calc_rmsd.test_output' is explicitly added 2026-02-14T09:51:33,751 to the `packages` configuration field. 2026-02-14T09:51:33,752 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,752 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,753 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,754 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,755 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,756 If you don't want 'rna_tools.tools.rna_calc_rmsd.test_output' to be distributed and are 2026-02-14T09:51:33,757 already explicitly excluding 'rna_tools.tools.rna_calc_rmsd.test_output' via 2026-02-14T09:51:33,757 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,757 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,758 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,759 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,760 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,761 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,762 even if it does not contain any `.py` files. 2026-02-14T09:51:33,762 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,763 directory, all directories are treated like packages. 2026-02-14T09:51:33,763 ******************************************************************************** 2026-02-14T09:51:33,765 !! 2026-02-14T09:51:33,765 check.warn(importable) 2026-02-14T09:51:33,765 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_convert_pseudoknot_formats.doc' is absent from the `packages` configuration. 2026-02-14T09:51:33,766 !! 2026-02-14T09:51:33,766 ******************************************************************************** 2026-02-14T09:51:33,767 ############################ 2026-02-14T09:51:33,767 # Package would be ignored # 2026-02-14T09:51:33,767 ############################ 2026-02-14T09:51:33,768 Python recognizes 'rna_tools.tools.rna_convert_pseudoknot_formats.doc' as an importable package[^1], 2026-02-14T09:51:33,768 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,769 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,769 package, please make sure that 'rna_tools.tools.rna_convert_pseudoknot_formats.doc' is explicitly added 2026-02-14T09:51:33,770 to the `packages` configuration field. 2026-02-14T09:51:33,770 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,771 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,771 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,772 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,773 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,774 If you don't want 'rna_tools.tools.rna_convert_pseudoknot_formats.doc' to be distributed and are 2026-02-14T09:51:33,774 already explicitly excluding 'rna_tools.tools.rna_convert_pseudoknot_formats.doc' via 2026-02-14T09:51:33,775 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,775 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,776 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,777 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,778 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,780 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,780 even if it does not contain any `.py` files. 2026-02-14T09:51:33,781 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,782 directory, all directories are treated like packages. 2026-02-14T09:51:33,782 ******************************************************************************** 2026-02-14T09:51:33,783 !! 2026-02-14T09:51:33,784 check.warn(importable) 2026-02-14T09:51:33,784 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_convert_pseudoknot_formats.test_data' is absent from the `packages` configuration. 2026-02-14T09:51:33,785 !! 2026-02-14T09:51:33,785 ******************************************************************************** 2026-02-14T09:51:33,786 ############################ 2026-02-14T09:51:33,787 # Package would be ignored # 2026-02-14T09:51:33,787 ############################ 2026-02-14T09:51:33,788 Python recognizes 'rna_tools.tools.rna_convert_pseudoknot_formats.test_data' as an importable package[^1], 2026-02-14T09:51:33,788 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,790 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,790 package, please make sure that 'rna_tools.tools.rna_convert_pseudoknot_formats.test_data' is explicitly added 2026-02-14T09:51:33,791 to the `packages` configuration field. 2026-02-14T09:51:33,792 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,792 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,793 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,793 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,794 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,795 If you don't want 'rna_tools.tools.rna_convert_pseudoknot_formats.test_data' to be distributed and are 2026-02-14T09:51:33,795 already explicitly excluding 'rna_tools.tools.rna_convert_pseudoknot_formats.test_data' via 2026-02-14T09:51:33,795 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,796 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,796 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,797 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,798 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,799 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,799 even if it does not contain any `.py` files. 2026-02-14T09:51:33,800 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,800 directory, all directories are treated like packages. 2026-02-14T09:51:33,800 ******************************************************************************** 2026-02-14T09:51:33,801 !! 2026-02-14T09:51:33,802 check.warn(importable) 2026-02-14T09:51:33,803 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_filter.test_data' is absent from the `packages` configuration. 2026-02-14T09:51:33,803 !! 2026-02-14T09:51:33,804 ******************************************************************************** 2026-02-14T09:51:33,805 ############################ 2026-02-14T09:51:33,805 # Package would be ignored # 2026-02-14T09:51:33,806 ############################ 2026-02-14T09:51:33,806 Python recognizes 'rna_tools.tools.rna_filter.test_data' as an importable package[^1], 2026-02-14T09:51:33,807 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,808 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,808 package, please make sure that 'rna_tools.tools.rna_filter.test_data' is explicitly added 2026-02-14T09:51:33,809 to the `packages` configuration field. 2026-02-14T09:51:33,810 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,810 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,811 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,812 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,813 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,814 If you don't want 'rna_tools.tools.rna_filter.test_data' to be distributed and are 2026-02-14T09:51:33,814 already explicitly excluding 'rna_tools.tools.rna_filter.test_data' via 2026-02-14T09:51:33,815 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,815 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,816 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,817 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,818 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,819 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,819 even if it does not contain any `.py` files. 2026-02-14T09:51:33,819 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,820 directory, all directories are treated like packages. 2026-02-14T09:51:33,820 ******************************************************************************** 2026-02-14T09:51:33,821 !! 2026-02-14T09:51:33,821 check.warn(importable) 2026-02-14T09:51:33,821 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_get_restraints' is absent from the `packages` configuration. 2026-02-14T09:51:33,822 !! 2026-02-14T09:51:33,823 ******************************************************************************** 2026-02-14T09:51:33,823 ############################ 2026-02-14T09:51:33,823 # Package would be ignored # 2026-02-14T09:51:33,824 ############################ 2026-02-14T09:51:33,824 Python recognizes 'rna_tools.tools.rna_get_restraints' as an importable package[^1], 2026-02-14T09:51:33,824 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,825 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,826 package, please make sure that 'rna_tools.tools.rna_get_restraints' is explicitly added 2026-02-14T09:51:33,826 to the `packages` configuration field. 2026-02-14T09:51:33,828 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,828 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,828 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,830 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,831 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,832 If you don't want 'rna_tools.tools.rna_get_restraints' to be distributed and are 2026-02-14T09:51:33,832 already explicitly excluding 'rna_tools.tools.rna_get_restraints' via 2026-02-14T09:51:33,833 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,834 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,834 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,835 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,836 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,838 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,838 even if it does not contain any `.py` files. 2026-02-14T09:51:33,839 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,839 directory, all directories are treated like packages. 2026-02-14T09:51:33,840 ******************************************************************************** 2026-02-14T09:51:33,841 !! 2026-02-14T09:51:33,841 check.warn(importable) 2026-02-14T09:51:33,842 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_helix_vis.doc' is absent from the `packages` configuration. 2026-02-14T09:51:33,842 !! 2026-02-14T09:51:33,843 ******************************************************************************** 2026-02-14T09:51:33,844 ############################ 2026-02-14T09:51:33,844 # Package would be ignored # 2026-02-14T09:51:33,845 ############################ 2026-02-14T09:51:33,845 Python recognizes 'rna_tools.tools.rna_helix_vis.doc' as an importable package[^1], 2026-02-14T09:51:33,845 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,846 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,846 package, please make sure that 'rna_tools.tools.rna_helix_vis.doc' is explicitly added 2026-02-14T09:51:33,847 to the `packages` configuration field. 2026-02-14T09:51:33,847 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,848 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,848 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,849 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,850 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,850 If you don't want 'rna_tools.tools.rna_helix_vis.doc' to be distributed and are 2026-02-14T09:51:33,851 already explicitly excluding 'rna_tools.tools.rna_helix_vis.doc' via 2026-02-14T09:51:33,851 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,852 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,852 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,853 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,854 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,856 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,856 even if it does not contain any `.py` files. 2026-02-14T09:51:33,857 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,858 directory, all directories are treated like packages. 2026-02-14T09:51:33,858 ******************************************************************************** 2026-02-14T09:51:33,860 !! 2026-02-14T09:51:33,860 check.warn(importable) 2026-02-14T09:51:33,861 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_helix_vis.test_data' is absent from the `packages` configuration. 2026-02-14T09:51:33,861 !! 2026-02-14T09:51:33,863 ******************************************************************************** 2026-02-14T09:51:33,863 ############################ 2026-02-14T09:51:33,863 # Package would be ignored # 2026-02-14T09:51:33,864 ############################ 2026-02-14T09:51:33,864 Python recognizes 'rna_tools.tools.rna_helix_vis.test_data' as an importable package[^1], 2026-02-14T09:51:33,865 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,866 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,866 package, please make sure that 'rna_tools.tools.rna_helix_vis.test_data' is explicitly added 2026-02-14T09:51:33,867 to the `packages` configuration field. 2026-02-14T09:51:33,868 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,869 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,869 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,871 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,872 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,872 If you don't want 'rna_tools.tools.rna_helix_vis.test_data' to be distributed and are 2026-02-14T09:51:33,873 already explicitly excluding 'rna_tools.tools.rna_helix_vis.test_data' via 2026-02-14T09:51:33,873 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,873 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,874 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,874 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,875 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,876 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,877 even if it does not contain any `.py` files. 2026-02-14T09:51:33,877 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,877 directory, all directories are treated like packages. 2026-02-14T09:51:33,878 ******************************************************************************** 2026-02-14T09:51:33,879 !! 2026-02-14T09:51:33,879 check.warn(importable) 2026-02-14T09:51:33,880 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_multimodels' is absent from the `packages` configuration. 2026-02-14T09:51:33,880 !! 2026-02-14T09:51:33,881 ******************************************************************************** 2026-02-14T09:51:33,882 ############################ 2026-02-14T09:51:33,883 # Package would be ignored # 2026-02-14T09:51:33,884 ############################ 2026-02-14T09:51:33,884 Python recognizes 'rna_tools.tools.rna_multimodels' as an importable package[^1], 2026-02-14T09:51:33,885 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,887 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,888 package, please make sure that 'rna_tools.tools.rna_multimodels' is explicitly added 2026-02-14T09:51:33,889 to the `packages` configuration field. 2026-02-14T09:51:33,890 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,891 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,893 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,894 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,895 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,896 If you don't want 'rna_tools.tools.rna_multimodels' to be distributed and are 2026-02-14T09:51:33,896 already explicitly excluding 'rna_tools.tools.rna_multimodels' via 2026-02-14T09:51:33,897 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,897 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,898 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,899 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,901 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,904 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,904 even if it does not contain any `.py` files. 2026-02-14T09:51:33,905 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,907 directory, all directories are treated like packages. 2026-02-14T09:51:33,908 ******************************************************************************** 2026-02-14T09:51:33,910 !! 2026-02-14T09:51:33,911 check.warn(importable) 2026-02-14T09:51:33,912 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_multimodels.data' is absent from the `packages` configuration. 2026-02-14T09:51:33,912 !! 2026-02-14T09:51:33,914 ******************************************************************************** 2026-02-14T09:51:33,914 ############################ 2026-02-14T09:51:33,915 # Package would be ignored # 2026-02-14T09:51:33,916 ############################ 2026-02-14T09:51:33,916 Python recognizes 'rna_tools.tools.rna_multimodels.data' as an importable package[^1], 2026-02-14T09:51:33,917 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:33,919 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:33,920 package, please make sure that 'rna_tools.tools.rna_multimodels.data' is explicitly added 2026-02-14T09:51:33,920 to the `packages` configuration field. 2026-02-14T09:51:33,922 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:33,923 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:33,924 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:33,926 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:33,927 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:33,929 If you don't want 'rna_tools.tools.rna_multimodels.data' to be distributed and are 2026-02-14T09:51:33,929 already explicitly excluding 'rna_tools.tools.rna_multimodels.data' via 2026-02-14T09:51:33,930 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:33,931 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:33,932 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:33,934 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:33,935 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:33,938 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:33,939 even if it does not contain any `.py` files. 2026-02-14T09:51:33,940 On the other hand, currently there is no concept of package data 2026-02-14T09:51:33,941 directory, all directories are treated like packages. 2026-02-14T09:51:33,942 ******************************************************************************** 2026-02-14T09:51:33,944 !! 2026-02-14T09:51:33,945 check.warn(importable) 2026-02-14T09:51:33,946 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_multimodels.test_in' is absent from the `packages` configuration. 2026-02-14T09:51:33,947 !! 2026-02-14T09:51:33,988 ******************************************************************************** 2026-02-14T09:51:33,989 ############################ 2026-02-14T09:51:33,991 # Package would be ignored # 2026-02-14T09:51:33,992 ############################ 2026-02-14T09:51:34,062 Python recognizes 'rna_tools.tools.rna_multimodels.test_in' as an importable package[^1], 2026-02-14T09:51:34,063 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:34,065 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:34,065 package, please make sure that 'rna_tools.tools.rna_multimodels.test_in' is explicitly added 2026-02-14T09:51:34,066 to the `packages` configuration field. 2026-02-14T09:51:34,066 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:34,067 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:34,067 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:34,068 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:34,069 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:34,069 If you don't want 'rna_tools.tools.rna_multimodels.test_in' to be distributed and are 2026-02-14T09:51:34,070 already explicitly excluding 'rna_tools.tools.rna_multimodels.test_in' via 2026-02-14T09:51:34,070 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:34,071 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:34,071 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:34,072 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:34,073 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:34,074 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:34,075 even if it does not contain any `.py` files. 2026-02-14T09:51:34,075 On the other hand, currently there is no concept of package data 2026-02-14T09:51:34,076 directory, all directories are treated like packages. 2026-02-14T09:51:34,076 ******************************************************************************** 2026-02-14T09:51:34,077 !! 2026-02-14T09:51:34,078 check.warn(importable) 2026-02-14T09:51:34,078 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_multimodels.test_out' is absent from the `packages` configuration. 2026-02-14T09:51:34,079 !! 2026-02-14T09:51:34,080 ******************************************************************************** 2026-02-14T09:51:34,081 ############################ 2026-02-14T09:51:34,081 # Package would be ignored # 2026-02-14T09:51:34,082 ############################ 2026-02-14T09:51:34,082 Python recognizes 'rna_tools.tools.rna_multimodels.test_out' as an importable package[^1], 2026-02-14T09:51:34,083 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:34,084 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:34,085 package, please make sure that 'rna_tools.tools.rna_multimodels.test_out' is explicitly added 2026-02-14T09:51:34,086 to the `packages` configuration field. 2026-02-14T09:51:34,087 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:34,088 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:34,089 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:34,090 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:34,092 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:34,094 If you don't want 'rna_tools.tools.rna_multimodels.test_out' to be distributed and are 2026-02-14T09:51:34,095 already explicitly excluding 'rna_tools.tools.rna_multimodels.test_out' via 2026-02-14T09:51:34,096 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:34,097 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:34,099 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:34,315 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:34,315 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:34,317 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:34,317 even if it does not contain any `.py` files. 2026-02-14T09:51:34,318 On the other hand, currently there is no concept of package data 2026-02-14T09:51:34,318 directory, all directories are treated like packages. 2026-02-14T09:51:34,318 ******************************************************************************** 2026-02-14T09:51:34,319 !! 2026-02-14T09:51:34,320 check.warn(importable) 2026-02-14T09:51:34,320 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_pdb_edit_occupancy_bfactor.test_data' is absent from the `packages` configuration. 2026-02-14T09:51:34,320 !! 2026-02-14T09:51:34,321 ******************************************************************************** 2026-02-14T09:51:34,322 ############################ 2026-02-14T09:51:34,322 # Package would be ignored # 2026-02-14T09:51:34,323 ############################ 2026-02-14T09:51:34,323 Python recognizes 'rna_tools.tools.rna_pdb_edit_occupancy_bfactor.test_data' as an importable package[^1], 2026-02-14T09:51:34,323 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:34,324 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:34,325 package, please make sure that 'rna_tools.tools.rna_pdb_edit_occupancy_bfactor.test_data' is explicitly added 2026-02-14T09:51:34,325 to the `packages` configuration field. 2026-02-14T09:51:34,326 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:34,327 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:34,327 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:34,329 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:34,330 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:34,331 If you don't want 'rna_tools.tools.rna_pdb_edit_occupancy_bfactor.test_data' to be distributed and are 2026-02-14T09:51:34,331 already explicitly excluding 'rna_tools.tools.rna_pdb_edit_occupancy_bfactor.test_data' via 2026-02-14T09:51:34,332 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:34,332 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:34,333 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:34,334 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:34,335 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:34,337 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:34,337 even if it does not contain any `.py` files. 2026-02-14T09:51:34,338 On the other hand, currently there is no concept of package data 2026-02-14T09:51:34,338 directory, all directories are treated like packages. 2026-02-14T09:51:34,339 ******************************************************************************** 2026-02-14T09:51:34,340 !! 2026-02-14T09:51:34,341 check.warn(importable) 2026-02-14T09:51:34,341 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_pdb_merge_structure_with_fragments.test_data' is absent from the `packages` configuration. 2026-02-14T09:51:34,342 !! 2026-02-14T09:51:34,343 ******************************************************************************** 2026-02-14T09:51:34,343 ############################ 2026-02-14T09:51:34,343 # Package would be ignored # 2026-02-14T09:51:34,344 ############################ 2026-02-14T09:51:34,344 Python recognizes 'rna_tools.tools.rna_pdb_merge_structure_with_fragments.test_data' as an importable package[^1], 2026-02-14T09:51:34,344 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:34,345 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:34,346 package, please make sure that 'rna_tools.tools.rna_pdb_merge_structure_with_fragments.test_data' is explicitly added 2026-02-14T09:51:34,346 to the `packages` configuration field. 2026-02-14T09:51:34,347 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:34,347 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:34,348 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:34,348 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:34,349 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:34,350 If you don't want 'rna_tools.tools.rna_pdb_merge_structure_with_fragments.test_data' to be distributed and are 2026-02-14T09:51:34,351 already explicitly excluding 'rna_tools.tools.rna_pdb_merge_structure_with_fragments.test_data' via 2026-02-14T09:51:34,351 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:34,352 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:34,352 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:34,353 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:34,355 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:34,356 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:34,357 even if it does not contain any `.py` files. 2026-02-14T09:51:34,358 On the other hand, currently there is no concept of package data 2026-02-14T09:51:34,359 directory, all directories are treated like packages. 2026-02-14T09:51:34,360 ******************************************************************************** 2026-02-14T09:51:34,361 !! 2026-02-14T09:51:34,362 check.warn(importable) 2026-02-14T09:51:34,362 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_prediction_significance.opt' is absent from the `packages` configuration. 2026-02-14T09:51:34,363 !! 2026-02-14T09:51:34,365 ******************************************************************************** 2026-02-14T09:51:34,365 ############################ 2026-02-14T09:51:34,366 # Package would be ignored # 2026-02-14T09:51:34,367 ############################ 2026-02-14T09:51:34,367 Python recognizes 'rna_tools.tools.rna_prediction_significance.opt' as an importable package[^1], 2026-02-14T09:51:34,368 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:34,370 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:34,371 package, please make sure that 'rna_tools.tools.rna_prediction_significance.opt' is explicitly added 2026-02-14T09:51:34,371 to the `packages` configuration field. 2026-02-14T09:51:34,374 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:34,375 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:34,375 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:34,377 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:34,378 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:34,379 If you don't want 'rna_tools.tools.rna_prediction_significance.opt' to be distributed and are 2026-02-14T09:51:34,379 already explicitly excluding 'rna_tools.tools.rna_prediction_significance.opt' via 2026-02-14T09:51:34,380 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:34,381 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:34,381 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:34,382 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:34,384 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:34,385 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:34,386 even if it does not contain any `.py` files. 2026-02-14T09:51:34,387 On the other hand, currently there is no concept of package data 2026-02-14T09:51:34,387 directory, all directories are treated like packages. 2026-02-14T09:51:34,388 ******************************************************************************** 2026-02-14T09:51:34,389 !! 2026-02-14T09:51:34,390 check.warn(importable) 2026-02-14T09:51:34,390 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_refinement.test_data' is absent from the `packages` configuration. 2026-02-14T09:51:34,391 !! 2026-02-14T09:51:34,393 ******************************************************************************** 2026-02-14T09:51:34,393 ############################ 2026-02-14T09:51:34,394 # Package would be ignored # 2026-02-14T09:51:34,395 ############################ 2026-02-14T09:51:34,396 Python recognizes 'rna_tools.tools.rna_refinement.test_data' as an importable package[^1], 2026-02-14T09:51:34,396 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:34,398 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:34,399 package, please make sure that 'rna_tools.tools.rna_refinement.test_data' is explicitly added 2026-02-14T09:51:34,399 to the `packages` configuration field. 2026-02-14T09:51:34,401 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:34,401 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:34,402 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:34,403 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:34,405 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:34,406 If you don't want 'rna_tools.tools.rna_refinement.test_data' to be distributed and are 2026-02-14T09:51:34,407 already explicitly excluding 'rna_tools.tools.rna_refinement.test_data' via 2026-02-14T09:51:34,408 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:34,408 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:34,409 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:34,411 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:34,412 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:34,414 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:34,414 even if it does not contain any `.py` files. 2026-02-14T09:51:34,415 On the other hand, currently there is no concept of package data 2026-02-14T09:51:34,415 directory, all directories are treated like packages. 2026-02-14T09:51:34,416 ******************************************************************************** 2026-02-14T09:51:34,417 !! 2026-02-14T09:51:34,418 check.warn(importable) 2026-02-14T09:51:34,418 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_rfam' is absent from the `packages` configuration. 2026-02-14T09:51:34,419 !! 2026-02-14T09:51:34,420 ******************************************************************************** 2026-02-14T09:51:34,420 ############################ 2026-02-14T09:51:34,421 # Package would be ignored # 2026-02-14T09:51:34,421 ############################ 2026-02-14T09:51:34,422 Python recognizes 'rna_tools.tools.rna_rfam' as an importable package[^1], 2026-02-14T09:51:34,423 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:34,424 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:34,424 package, please make sure that 'rna_tools.tools.rna_rfam' is explicitly added 2026-02-14T09:51:34,425 to the `packages` configuration field. 2026-02-14T09:51:34,426 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:34,427 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:34,428 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:34,429 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:34,431 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:34,432 If you don't want 'rna_tools.tools.rna_rfam' to be distributed and are 2026-02-14T09:51:34,433 already explicitly excluding 'rna_tools.tools.rna_rfam' via 2026-02-14T09:51:34,434 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:34,434 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:34,435 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:34,436 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:34,438 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:34,440 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:34,441 even if it does not contain any `.py` files. 2026-02-14T09:51:34,441 On the other hand, currently there is no concept of package data 2026-02-14T09:51:34,442 directory, all directories are treated like packages. 2026-02-14T09:51:34,443 ******************************************************************************** 2026-02-14T09:51:34,444 !! 2026-02-14T09:51:34,445 check.warn(importable) 2026-02-14T09:51:34,445 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_rosetta.test_data' is absent from the `packages` configuration. 2026-02-14T09:51:34,446 !! 2026-02-14T09:51:34,448 ******************************************************************************** 2026-02-14T09:51:34,448 ############################ 2026-02-14T09:51:34,450 # Package would be ignored # 2026-02-14T09:51:34,450 ############################ 2026-02-14T09:51:34,451 Python recognizes 'rna_tools.tools.rna_rosetta.test_data' as an importable package[^1], 2026-02-14T09:51:34,451 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:34,452 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:34,453 package, please make sure that 'rna_tools.tools.rna_rosetta.test_data' is explicitly added 2026-02-14T09:51:34,454 to the `packages` configuration field. 2026-02-14T09:51:34,455 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:34,455 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:34,456 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:34,457 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:34,458 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:34,458 If you don't want 'rna_tools.tools.rna_rosetta.test_data' to be distributed and are 2026-02-14T09:51:34,459 already explicitly excluding 'rna_tools.tools.rna_rosetta.test_data' via 2026-02-14T09:51:34,459 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:34,460 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:34,460 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:34,461 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:34,462 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:34,463 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:34,464 even if it does not contain any `.py` files. 2026-02-14T09:51:34,465 On the other hand, currently there is no concept of package data 2026-02-14T09:51:34,465 directory, all directories are treated like packages. 2026-02-14T09:51:34,466 ******************************************************************************** 2026-02-14T09:51:34,467 !! 2026-02-14T09:51:34,467 check.warn(importable) 2026-02-14T09:51:34,468 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_rosetta.test_data.tl' is absent from the `packages` configuration. 2026-02-14T09:51:34,469 !! 2026-02-14T09:51:34,470 ******************************************************************************** 2026-02-14T09:51:34,470 ############################ 2026-02-14T09:51:34,471 # Package would be ignored # 2026-02-14T09:51:34,471 ############################ 2026-02-14T09:51:34,472 Python recognizes 'rna_tools.tools.rna_rosetta.test_data.tl' as an importable package[^1], 2026-02-14T09:51:34,472 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:34,473 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:34,474 package, please make sure that 'rna_tools.tools.rna_rosetta.test_data.tl' is explicitly added 2026-02-14T09:51:34,474 to the `packages` configuration field. 2026-02-14T09:51:34,476 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:34,476 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:34,477 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:34,478 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:34,479 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:34,480 If you don't want 'rna_tools.tools.rna_rosetta.test_data.tl' to be distributed and are 2026-02-14T09:51:34,480 already explicitly excluding 'rna_tools.tools.rna_rosetta.test_data.tl' via 2026-02-14T09:51:34,481 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:34,481 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:34,481 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:34,482 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:34,483 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:34,484 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:34,484 even if it does not contain any `.py` files. 2026-02-14T09:51:34,485 On the other hand, currently there is no concept of package data 2026-02-14T09:51:34,485 directory, all directories are treated like packages. 2026-02-14T09:51:34,485 ******************************************************************************** 2026-02-14T09:51:34,486 !! 2026-02-14T09:51:34,486 check.warn(importable) 2026-02-14T09:51:34,487 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_sali2dotbracket.test_data' is absent from the `packages` configuration. 2026-02-14T09:51:34,487 !! 2026-02-14T09:51:34,488 ******************************************************************************** 2026-02-14T09:51:34,489 ############################ 2026-02-14T09:51:34,489 # Package would be ignored # 2026-02-14T09:51:34,490 ############################ 2026-02-14T09:51:34,490 Python recognizes 'rna_tools.tools.rna_sali2dotbracket.test_data' as an importable package[^1], 2026-02-14T09:51:34,491 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:34,492 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:34,492 package, please make sure that 'rna_tools.tools.rna_sali2dotbracket.test_data' is explicitly added 2026-02-14T09:51:34,493 to the `packages` configuration field. 2026-02-14T09:51:34,494 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:34,495 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:34,495 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:34,496 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:34,497 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:34,498 If you don't want 'rna_tools.tools.rna_sali2dotbracket.test_data' to be distributed and are 2026-02-14T09:51:34,498 already explicitly excluding 'rna_tools.tools.rna_sali2dotbracket.test_data' via 2026-02-14T09:51:34,499 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:34,499 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:34,500 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:34,501 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:34,502 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:34,503 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:34,504 even if it does not contain any `.py` files. 2026-02-14T09:51:34,505 On the other hand, currently there is no concept of package data 2026-02-14T09:51:34,505 directory, all directories are treated like packages. 2026-02-14T09:51:34,506 ******************************************************************************** 2026-02-14T09:51:34,507 !! 2026-02-14T09:51:34,507 check.warn(importable) 2026-02-14T09:51:34,507 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_seq_identity' is absent from the `packages` configuration. 2026-02-14T09:51:34,508 !! 2026-02-14T09:51:34,508 ******************************************************************************** 2026-02-14T09:51:34,509 ############################ 2026-02-14T09:51:34,509 # Package would be ignored # 2026-02-14T09:51:34,509 ############################ 2026-02-14T09:51:34,510 Python recognizes 'rna_tools.tools.rna_seq_identity' as an importable package[^1], 2026-02-14T09:51:34,510 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:34,511 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:34,511 package, please make sure that 'rna_tools.tools.rna_seq_identity' is explicitly added 2026-02-14T09:51:34,512 to the `packages` configuration field. 2026-02-14T09:51:34,512 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:34,513 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:34,513 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:34,514 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:34,515 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:34,516 If you don't want 'rna_tools.tools.rna_seq_identity' to be distributed and are 2026-02-14T09:51:34,517 already explicitly excluding 'rna_tools.tools.rna_seq_identity' via 2026-02-14T09:51:34,517 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:34,518 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:34,518 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:34,519 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:34,520 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:34,522 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:34,523 even if it does not contain any `.py` files. 2026-02-14T09:51:34,524 On the other hand, currently there is no concept of package data 2026-02-14T09:51:34,524 directory, all directories are treated like packages. 2026-02-14T09:51:34,525 ******************************************************************************** 2026-02-14T09:51:34,526 !! 2026-02-14T09:51:34,526 check.warn(importable) 2026-02-14T09:51:34,527 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_x3dna.test_data' is absent from the `packages` configuration. 2026-02-14T09:51:34,527 !! 2026-02-14T09:51:34,528 ******************************************************************************** 2026-02-14T09:51:34,529 ############################ 2026-02-14T09:51:34,529 # Package would be ignored # 2026-02-14T09:51:34,530 ############################ 2026-02-14T09:51:34,530 Python recognizes 'rna_tools.tools.rna_x3dna.test_data' as an importable package[^1], 2026-02-14T09:51:34,531 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:34,532 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:34,533 package, please make sure that 'rna_tools.tools.rna_x3dna.test_data' is explicitly added 2026-02-14T09:51:34,533 to the `packages` configuration field. 2026-02-14T09:51:34,534 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:34,534 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:34,535 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:34,535 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:34,536 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:34,537 If you don't want 'rna_tools.tools.rna_x3dna.test_data' to be distributed and are 2026-02-14T09:51:34,537 already explicitly excluding 'rna_tools.tools.rna_x3dna.test_data' via 2026-02-14T09:51:34,538 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:34,538 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:34,538 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:34,539 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:34,540 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:34,542 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:34,543 even if it does not contain any `.py` files. 2026-02-14T09:51:34,544 On the other hand, currently there is no concept of package data 2026-02-14T09:51:34,545 directory, all directories are treated like packages. 2026-02-14T09:51:34,546 ******************************************************************************** 2026-02-14T09:51:34,547 !! 2026-02-14T09:51:34,548 check.warn(importable) 2026-02-14T09:51:34,549 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rnapuzzle_sender' is absent from the `packages` configuration. 2026-02-14T09:51:34,550 !! 2026-02-14T09:51:34,552 ******************************************************************************** 2026-02-14T09:51:34,553 ############################ 2026-02-14T09:51:34,553 # Package would be ignored # 2026-02-14T09:51:34,554 ############################ 2026-02-14T09:51:34,555 Python recognizes 'rna_tools.tools.rnapuzzle_sender' as an importable package[^1], 2026-02-14T09:51:34,556 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:34,558 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:34,559 package, please make sure that 'rna_tools.tools.rnapuzzle_sender' is explicitly added 2026-02-14T09:51:34,559 to the `packages` configuration field. 2026-02-14T09:51:34,561 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:34,562 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:34,563 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:34,564 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:34,566 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:34,568 If you don't want 'rna_tools.tools.rnapuzzle_sender' to be distributed and are 2026-02-14T09:51:34,569 already explicitly excluding 'rna_tools.tools.rnapuzzle_sender' via 2026-02-14T09:51:34,570 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:34,571 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:34,572 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:34,574 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:34,575 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:34,577 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:34,578 even if it does not contain any `.py` files. 2026-02-14T09:51:34,578 On the other hand, currently there is no concept of package data 2026-02-14T09:51:34,579 directory, all directories are treated like packages. 2026-02-14T09:51:34,580 ******************************************************************************** 2026-02-14T09:51:34,581 !! 2026-02-14T09:51:34,581 check.warn(importable) 2026-02-14T09:51:34,582 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rnapuzzle_sender.files' is absent from the `packages` configuration. 2026-02-14T09:51:34,582 !! 2026-02-14T09:51:34,584 ******************************************************************************** 2026-02-14T09:51:34,584 ############################ 2026-02-14T09:51:34,585 # Package would be ignored # 2026-02-14T09:51:34,586 ############################ 2026-02-14T09:51:34,587 Python recognizes 'rna_tools.tools.rnapuzzle_sender.files' as an importable package[^1], 2026-02-14T09:51:34,587 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:34,589 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:34,590 package, please make sure that 'rna_tools.tools.rnapuzzle_sender.files' is explicitly added 2026-02-14T09:51:34,591 to the `packages` configuration field. 2026-02-14T09:51:34,593 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:34,594 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:34,595 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:34,597 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:34,599 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:34,601 If you don't want 'rna_tools.tools.rnapuzzle_sender.files' to be distributed and are 2026-02-14T09:51:34,602 already explicitly excluding 'rna_tools.tools.rnapuzzle_sender.files' via 2026-02-14T09:51:34,603 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:34,604 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:34,605 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:34,608 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:34,609 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:34,611 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:34,612 even if it does not contain any `.py` files. 2026-02-14T09:51:34,613 On the other hand, currently there is no concept of package data 2026-02-14T09:51:34,646 directory, all directories are treated like packages. 2026-02-14T09:51:34,647 ******************************************************************************** 2026-02-14T09:51:34,649 !! 2026-02-14T09:51:34,650 check.warn(importable) 2026-02-14T09:51:34,651 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rnapuzzle_sender.test_of_email_content' is absent from the `packages` configuration. 2026-02-14T09:51:34,653 !! 2026-02-14T09:51:34,656 ******************************************************************************** 2026-02-14T09:51:34,657 ############################ 2026-02-14T09:51:34,658 # Package would be ignored # 2026-02-14T09:51:34,659 ############################ 2026-02-14T09:51:34,660 Python recognizes 'rna_tools.tools.rnapuzzle_sender.test_of_email_content' as an importable package[^1], 2026-02-14T09:51:34,661 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:34,663 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:34,664 package, please make sure that 'rna_tools.tools.rnapuzzle_sender.test_of_email_content' is explicitly added 2026-02-14T09:51:34,665 to the `packages` configuration field. 2026-02-14T09:51:34,666 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:34,667 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:34,668 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:34,670 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:34,672 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:34,674 If you don't want 'rna_tools.tools.rnapuzzle_sender.test_of_email_content' to be distributed and are 2026-02-14T09:51:34,705 already explicitly excluding 'rna_tools.tools.rnapuzzle_sender.test_of_email_content' via 2026-02-14T09:51:34,705 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:34,706 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:34,706 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:34,707 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:34,708 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:34,710 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:34,710 even if it does not contain any `.py` files. 2026-02-14T09:51:34,711 On the other hand, currently there is no concept of package data 2026-02-14T09:51:34,711 directory, all directories are treated like packages. 2026-02-14T09:51:34,712 ******************************************************************************** 2026-02-14T09:51:34,713 !! 2026-02-14T09:51:34,713 check.warn(importable) 2026-02-14T09:51:34,714 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rnashape2ascii' is absent from the `packages` configuration. 2026-02-14T09:51:34,714 !! 2026-02-14T09:51:34,715 ******************************************************************************** 2026-02-14T09:51:34,716 ############################ 2026-02-14T09:51:34,717 # Package would be ignored # 2026-02-14T09:51:34,717 ############################ 2026-02-14T09:51:34,718 Python recognizes 'rna_tools.tools.rnashape2ascii' as an importable package[^1], 2026-02-14T09:51:34,718 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:34,719 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:34,720 package, please make sure that 'rna_tools.tools.rnashape2ascii' is explicitly added 2026-02-14T09:51:34,720 to the `packages` configuration field. 2026-02-14T09:51:34,722 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:34,722 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:34,723 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:34,724 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:34,724 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:34,725 If you don't want 'rna_tools.tools.rnashape2ascii' to be distributed and are 2026-02-14T09:51:34,725 already explicitly excluding 'rna_tools.tools.rnashape2ascii' via 2026-02-14T09:51:34,726 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:34,726 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:34,727 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:34,728 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:34,729 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:34,730 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:34,730 even if it does not contain any `.py` files. 2026-02-14T09:51:34,731 On the other hand, currently there is no concept of package data 2026-02-14T09:51:34,731 directory, all directories are treated like packages. 2026-02-14T09:51:34,732 ******************************************************************************** 2026-02-14T09:51:34,732 !! 2026-02-14T09:51:34,733 check.warn(importable) 2026-02-14T09:51:34,733 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rnashape2ascii.test_data' is absent from the `packages` configuration. 2026-02-14T09:51:34,734 !! 2026-02-14T09:51:34,734 ******************************************************************************** 2026-02-14T09:51:34,735 ############################ 2026-02-14T09:51:34,735 # Package would be ignored # 2026-02-14T09:51:34,736 ############################ 2026-02-14T09:51:34,736 Python recognizes 'rna_tools.tools.rnashape2ascii.test_data' as an importable package[^1], 2026-02-14T09:51:34,737 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:34,738 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:34,739 package, please make sure that 'rna_tools.tools.rnashape2ascii.test_data' is explicitly added 2026-02-14T09:51:34,739 to the `packages` configuration field. 2026-02-14T09:51:34,740 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:34,741 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:34,741 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:34,742 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:34,743 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:34,744 If you don't want 'rna_tools.tools.rnashape2ascii.test_data' to be distributed and are 2026-02-14T09:51:34,744 already explicitly excluding 'rna_tools.tools.rnashape2ascii.test_data' via 2026-02-14T09:51:34,745 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:34,745 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:34,746 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:34,747 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:34,748 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:34,750 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:34,750 even if it does not contain any `.py` files. 2026-02-14T09:51:34,751 On the other hand, currently there is no concept of package data 2026-02-14T09:51:34,751 directory, all directories are treated like packages. 2026-02-14T09:51:34,751 ******************************************************************************** 2026-02-14T09:51:34,752 !! 2026-02-14T09:51:34,752 check.warn(importable) 2026-02-14T09:51:34,753 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.sandbox.rna_compare' is absent from the `packages` configuration. 2026-02-14T09:51:34,753 !! 2026-02-14T09:51:34,754 ******************************************************************************** 2026-02-14T09:51:34,754 ############################ 2026-02-14T09:51:34,755 # Package would be ignored # 2026-02-14T09:51:34,755 ############################ 2026-02-14T09:51:34,755 Python recognizes 'rna_tools.tools.sandbox.rna_compare' as an importable package[^1], 2026-02-14T09:51:34,756 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:34,756 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:34,757 package, please make sure that 'rna_tools.tools.sandbox.rna_compare' is explicitly added 2026-02-14T09:51:34,757 to the `packages` configuration field. 2026-02-14T09:51:34,758 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:34,758 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:34,759 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:34,760 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:34,761 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:34,762 If you don't want 'rna_tools.tools.sandbox.rna_compare' to be distributed and are 2026-02-14T09:51:34,763 already explicitly excluding 'rna_tools.tools.sandbox.rna_compare' via 2026-02-14T09:51:34,763 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:34,764 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:34,764 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:34,765 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:34,766 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:34,768 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:34,768 even if it does not contain any `.py` files. 2026-02-14T09:51:34,769 On the other hand, currently there is no concept of package data 2026-02-14T09:51:34,769 directory, all directories are treated like packages. 2026-02-14T09:51:34,770 ******************************************************************************** 2026-02-14T09:51:34,770 !! 2026-02-14T09:51:34,771 check.warn(importable) 2026-02-14T09:51:34,771 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.sandbox.rna_compare.test_data' is absent from the `packages` configuration. 2026-02-14T09:51:34,772 !! 2026-02-14T09:51:34,773 ******************************************************************************** 2026-02-14T09:51:34,774 ############################ 2026-02-14T09:51:34,774 # Package would be ignored # 2026-02-14T09:51:34,775 ############################ 2026-02-14T09:51:34,775 Python recognizes 'rna_tools.tools.sandbox.rna_compare.test_data' as an importable package[^1], 2026-02-14T09:51:34,776 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:34,777 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:34,777 package, please make sure that 'rna_tools.tools.sandbox.rna_compare.test_data' is explicitly added 2026-02-14T09:51:34,778 to the `packages` configuration field. 2026-02-14T09:51:34,778 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:34,779 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:34,779 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:34,780 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:34,781 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:34,781 If you don't want 'rna_tools.tools.sandbox.rna_compare.test_data' to be distributed and are 2026-02-14T09:51:34,782 already explicitly excluding 'rna_tools.tools.sandbox.rna_compare.test_data' via 2026-02-14T09:51:34,782 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:34,783 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:34,783 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:34,784 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:34,785 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:34,786 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:34,787 even if it does not contain any `.py` files. 2026-02-14T09:51:34,788 On the other hand, currently there is no concept of package data 2026-02-14T09:51:34,788 directory, all directories are treated like packages. 2026-02-14T09:51:34,788 ******************************************************************************** 2026-02-14T09:51:34,789 !! 2026-02-14T09:51:34,790 check.warn(importable) 2026-02-14T09:51:34,790 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.simrna_trajectory.test_data' is absent from the `packages` configuration. 2026-02-14T09:51:34,791 !! 2026-02-14T09:51:34,792 ******************************************************************************** 2026-02-14T09:51:34,793 ############################ 2026-02-14T09:51:34,793 # Package would be ignored # 2026-02-14T09:51:34,794 ############################ 2026-02-14T09:51:34,794 Python recognizes 'rna_tools.tools.simrna_trajectory.test_data' as an importable package[^1], 2026-02-14T09:51:34,795 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:34,796 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:34,796 package, please make sure that 'rna_tools.tools.simrna_trajectory.test_data' is explicitly added 2026-02-14T09:51:34,797 to the `packages` configuration field. 2026-02-14T09:51:34,798 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:34,798 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:34,799 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:34,800 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:34,801 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:34,803 If you don't want 'rna_tools.tools.simrna_trajectory.test_data' to be distributed and are 2026-02-14T09:51:34,803 already explicitly excluding 'rna_tools.tools.simrna_trajectory.test_data' via 2026-02-14T09:51:34,804 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:34,805 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:34,805 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:34,806 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:34,807 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:34,808 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:34,809 even if it does not contain any `.py` files. 2026-02-14T09:51:34,809 On the other hand, currently there is no concept of package data 2026-02-14T09:51:34,810 directory, all directories are treated like packages. 2026-02-14T09:51:34,810 ******************************************************************************** 2026-02-14T09:51:34,811 !! 2026-02-14T09:51:34,811 check.warn(importable) 2026-02-14T09:51:34,811 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.triplexibility' is absent from the `packages` configuration. 2026-02-14T09:51:34,812 !! 2026-02-14T09:51:34,813 ******************************************************************************** 2026-02-14T09:51:34,813 ############################ 2026-02-14T09:51:34,814 # Package would be ignored # 2026-02-14T09:51:34,814 ############################ 2026-02-14T09:51:34,815 Python recognizes 'rna_tools.tools.triplexibility' as an importable package[^1], 2026-02-14T09:51:34,815 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:34,816 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:34,817 package, please make sure that 'rna_tools.tools.triplexibility' is explicitly added 2026-02-14T09:51:34,817 to the `packages` configuration field. 2026-02-14T09:51:34,818 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:34,819 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:34,820 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:34,820 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:34,822 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:34,823 If you don't want 'rna_tools.tools.triplexibility' to be distributed and are 2026-02-14T09:51:34,823 already explicitly excluding 'rna_tools.tools.triplexibility' via 2026-02-14T09:51:34,824 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:34,824 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:34,824 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:34,826 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:34,827 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:34,828 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:34,829 even if it does not contain any `.py` files. 2026-02-14T09:51:34,829 On the other hand, currently there is no concept of package data 2026-02-14T09:51:34,830 directory, all directories are treated like packages. 2026-02-14T09:51:34,831 ******************************************************************************** 2026-02-14T09:51:34,832 !! 2026-02-14T09:51:34,832 check.warn(importable) 2026-02-14T09:51:34,833 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.triplexibility.data' is absent from the `packages` configuration. 2026-02-14T09:51:34,833 !! 2026-02-14T09:51:34,834 ******************************************************************************** 2026-02-14T09:51:34,834 ############################ 2026-02-14T09:51:34,835 # Package would be ignored # 2026-02-14T09:51:34,835 ############################ 2026-02-14T09:51:34,836 Python recognizes 'rna_tools.tools.triplexibility.data' as an importable package[^1], 2026-02-14T09:51:34,836 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:34,837 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:34,837 package, please make sure that 'rna_tools.tools.triplexibility.data' is explicitly added 2026-02-14T09:51:34,837 to the `packages` configuration field. 2026-02-14T09:51:34,838 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:34,839 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:34,839 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:34,840 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:34,841 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:34,841 If you don't want 'rna_tools.tools.triplexibility.data' to be distributed and are 2026-02-14T09:51:34,842 already explicitly excluding 'rna_tools.tools.triplexibility.data' via 2026-02-14T09:51:34,842 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:34,843 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:34,844 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:34,845 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:34,846 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:34,848 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:34,848 even if it does not contain any `.py` files. 2026-02-14T09:51:34,849 On the other hand, currently there is no concept of package data 2026-02-14T09:51:34,849 directory, all directories are treated like packages. 2026-02-14T09:51:34,850 ******************************************************************************** 2026-02-14T09:51:34,851 !! 2026-02-14T09:51:34,851 check.warn(importable) 2026-02-14T09:51:34,852 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.triplexibility.db' is absent from the `packages` configuration. 2026-02-14T09:51:34,852 !! 2026-02-14T09:51:34,853 ******************************************************************************** 2026-02-14T09:51:34,854 ############################ 2026-02-14T09:51:34,854 # Package would be ignored # 2026-02-14T09:51:34,855 ############################ 2026-02-14T09:51:34,855 Python recognizes 'rna_tools.tools.triplexibility.db' as an importable package[^1], 2026-02-14T09:51:34,856 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:34,857 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:34,858 package, please make sure that 'rna_tools.tools.triplexibility.db' is explicitly added 2026-02-14T09:51:34,858 to the `packages` configuration field. 2026-02-14T09:51:34,860 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:34,860 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:34,860 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:34,861 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:34,862 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:34,862 If you don't want 'rna_tools.tools.triplexibility.db' to be distributed and are 2026-02-14T09:51:34,863 already explicitly excluding 'rna_tools.tools.triplexibility.db' via 2026-02-14T09:51:34,863 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:34,863 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:34,864 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:34,865 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:34,866 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:34,867 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:34,867 even if it does not contain any `.py` files. 2026-02-14T09:51:34,868 On the other hand, currently there is no concept of package data 2026-02-14T09:51:34,868 directory, all directories are treated like packages. 2026-02-14T09:51:34,869 ******************************************************************************** 2026-02-14T09:51:34,869 !! 2026-02-14T09:51:34,870 check.warn(importable) 2026-02-14T09:51:34,871 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.admin.css' is absent from the `packages` configuration. 2026-02-14T09:51:34,871 !! 2026-02-14T09:51:34,873 ******************************************************************************** 2026-02-14T09:51:34,873 ############################ 2026-02-14T09:51:34,874 # Package would be ignored # 2026-02-14T09:51:34,875 ############################ 2026-02-14T09:51:34,876 Python recognizes 'rna_tools.tools.webserver-engine.admin.css' as an importable package[^1], 2026-02-14T09:51:34,876 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:34,877 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:34,878 package, please make sure that 'rna_tools.tools.webserver-engine.admin.css' is explicitly added 2026-02-14T09:51:34,879 to the `packages` configuration field. 2026-02-14T09:51:34,880 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:34,880 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:34,880 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:34,881 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:34,882 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:34,883 If you don't want 'rna_tools.tools.webserver-engine.admin.css' to be distributed and are 2026-02-14T09:51:34,884 already explicitly excluding 'rna_tools.tools.webserver-engine.admin.css' via 2026-02-14T09:51:34,885 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:34,885 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:34,886 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:34,887 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:34,888 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:34,889 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:34,889 even if it does not contain any `.py` files. 2026-02-14T09:51:34,889 On the other hand, currently there is no concept of package data 2026-02-14T09:51:34,890 directory, all directories are treated like packages. 2026-02-14T09:51:34,890 ******************************************************************************** 2026-02-14T09:51:34,891 !! 2026-02-14T09:51:34,891 check.warn(importable) 2026-02-14T09:51:34,891 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.admin.img' is absent from the `packages` configuration. 2026-02-14T09:51:34,892 !! 2026-02-14T09:51:34,893 ******************************************************************************** 2026-02-14T09:51:34,893 ############################ 2026-02-14T09:51:34,893 # Package would be ignored # 2026-02-14T09:51:34,894 ############################ 2026-02-14T09:51:34,894 Python recognizes 'rna_tools.tools.webserver-engine.admin.img' as an importable package[^1], 2026-02-14T09:51:34,895 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:34,895 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:34,896 package, please make sure that 'rna_tools.tools.webserver-engine.admin.img' is explicitly added 2026-02-14T09:51:34,896 to the `packages` configuration field. 2026-02-14T09:51:34,897 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:34,898 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:34,898 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:34,899 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:34,901 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:34,902 If you don't want 'rna_tools.tools.webserver-engine.admin.img' to be distributed and are 2026-02-14T09:51:34,902 already explicitly excluding 'rna_tools.tools.webserver-engine.admin.img' via 2026-02-14T09:51:34,903 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:34,903 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:34,904 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:34,905 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:34,906 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:34,907 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:34,908 even if it does not contain any `.py` files. 2026-02-14T09:51:34,908 On the other hand, currently there is no concept of package data 2026-02-14T09:51:34,909 directory, all directories are treated like packages. 2026-02-14T09:51:34,909 ******************************************************************************** 2026-02-14T09:51:34,911 !! 2026-02-14T09:51:34,911 check.warn(importable) 2026-02-14T09:51:34,912 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.admin.img.gis' is absent from the `packages` configuration. 2026-02-14T09:51:34,912 !! 2026-02-14T09:51:34,914 ******************************************************************************** 2026-02-14T09:51:34,914 ############################ 2026-02-14T09:51:34,915 # Package would be ignored # 2026-02-14T09:51:34,915 ############################ 2026-02-14T09:51:34,915 Python recognizes 'rna_tools.tools.webserver-engine.admin.img.gis' as an importable package[^1], 2026-02-14T09:51:34,916 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:34,917 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:34,917 package, please make sure that 'rna_tools.tools.webserver-engine.admin.img.gis' is explicitly added 2026-02-14T09:51:34,918 to the `packages` configuration field. 2026-02-14T09:51:34,919 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:34,919 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:34,919 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:34,920 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:34,921 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:34,922 If you don't want 'rna_tools.tools.webserver-engine.admin.img.gis' to be distributed and are 2026-02-14T09:51:34,923 already explicitly excluding 'rna_tools.tools.webserver-engine.admin.img.gis' via 2026-02-14T09:51:34,923 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:34,924 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:34,924 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:34,925 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:34,926 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:34,928 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:34,928 even if it does not contain any `.py` files. 2026-02-14T09:51:34,929 On the other hand, currently there is no concept of package data 2026-02-14T09:51:34,929 directory, all directories are treated like packages. 2026-02-14T09:51:34,930 ******************************************************************************** 2026-02-14T09:51:34,931 !! 2026-02-14T09:51:34,931 check.warn(importable) 2026-02-14T09:51:34,932 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.admin.js' is absent from the `packages` configuration. 2026-02-14T09:51:34,933 !! 2026-02-14T09:51:34,934 ******************************************************************************** 2026-02-14T09:51:34,934 ############################ 2026-02-14T09:51:34,934 # Package would be ignored # 2026-02-14T09:51:34,935 ############################ 2026-02-14T09:51:34,935 Python recognizes 'rna_tools.tools.webserver-engine.admin.js' as an importable package[^1], 2026-02-14T09:51:34,936 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:34,937 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:34,937 package, please make sure that 'rna_tools.tools.webserver-engine.admin.js' is explicitly added 2026-02-14T09:51:34,938 to the `packages` configuration field. 2026-02-14T09:51:34,939 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:34,939 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:34,940 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:34,941 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:34,942 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:34,943 If you don't want 'rna_tools.tools.webserver-engine.admin.js' to be distributed and are 2026-02-14T09:51:34,943 already explicitly excluding 'rna_tools.tools.webserver-engine.admin.js' via 2026-02-14T09:51:34,944 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:34,944 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:34,945 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:34,946 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:34,946 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:34,947 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:34,948 even if it does not contain any `.py` files. 2026-02-14T09:51:34,948 On the other hand, currently there is no concept of package data 2026-02-14T09:51:34,949 directory, all directories are treated like packages. 2026-02-14T09:51:34,949 ******************************************************************************** 2026-02-14T09:51:34,950 !! 2026-02-14T09:51:34,951 check.warn(importable) 2026-02-14T09:51:34,951 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.admin.js.admin' is absent from the `packages` configuration. 2026-02-14T09:51:34,952 !! 2026-02-14T09:51:34,953 ******************************************************************************** 2026-02-14T09:51:34,953 ############################ 2026-02-14T09:51:34,954 # Package would be ignored # 2026-02-14T09:51:34,955 ############################ 2026-02-14T09:51:34,955 Python recognizes 'rna_tools.tools.webserver-engine.admin.js.admin' as an importable package[^1], 2026-02-14T09:51:34,956 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:34,957 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:34,957 package, please make sure that 'rna_tools.tools.webserver-engine.admin.js.admin' is explicitly added 2026-02-14T09:51:34,958 to the `packages` configuration field. 2026-02-14T09:51:34,959 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:34,960 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:34,961 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:34,962 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:34,963 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:34,964 If you don't want 'rna_tools.tools.webserver-engine.admin.js.admin' to be distributed and are 2026-02-14T09:51:34,964 already explicitly excluding 'rna_tools.tools.webserver-engine.admin.js.admin' via 2026-02-14T09:51:34,965 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:34,966 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:34,966 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:34,967 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:34,968 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:34,970 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:34,971 even if it does not contain any `.py` files. 2026-02-14T09:51:34,971 On the other hand, currently there is no concept of package data 2026-02-14T09:51:34,972 directory, all directories are treated like packages. 2026-02-14T09:51:34,972 ******************************************************************************** 2026-02-14T09:51:34,973 !! 2026-02-14T09:51:34,974 check.warn(importable) 2026-02-14T09:51:34,974 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.app.static.app' is absent from the `packages` configuration. 2026-02-14T09:51:34,975 !! 2026-02-14T09:51:34,976 ******************************************************************************** 2026-02-14T09:51:34,976 ############################ 2026-02-14T09:51:34,976 # Package would be ignored # 2026-02-14T09:51:34,977 ############################ 2026-02-14T09:51:34,977 Python recognizes 'rna_tools.tools.webserver-engine.app.static.app' as an importable package[^1], 2026-02-14T09:51:34,978 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:34,979 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:34,979 package, please make sure that 'rna_tools.tools.webserver-engine.app.static.app' is explicitly added 2026-02-14T09:51:34,980 to the `packages` configuration field. 2026-02-14T09:51:34,981 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:34,981 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:34,982 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:34,983 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:34,984 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:34,985 If you don't want 'rna_tools.tools.webserver-engine.app.static.app' to be distributed and are 2026-02-14T09:51:34,985 already explicitly excluding 'rna_tools.tools.webserver-engine.app.static.app' via 2026-02-14T09:51:34,986 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:34,986 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:34,987 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:34,988 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:34,989 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:34,991 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:34,991 even if it does not contain any `.py` files. 2026-02-14T09:51:34,992 On the other hand, currently there is no concept of package data 2026-02-14T09:51:34,992 directory, all directories are treated like packages. 2026-02-14T09:51:34,993 ******************************************************************************** 2026-02-14T09:51:34,994 !! 2026-02-14T09:51:34,994 check.warn(importable) 2026-02-14T09:51:34,995 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.css' is absent from the `packages` configuration. 2026-02-14T09:51:34,996 !! 2026-02-14T09:51:34,997 ******************************************************************************** 2026-02-14T09:51:34,997 ############################ 2026-02-14T09:51:34,998 # Package would be ignored # 2026-02-14T09:51:34,999 ############################ 2026-02-14T09:51:34,999 Python recognizes 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.css' as an importable package[^1], 2026-02-14T09:51:35,000 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:35,001 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:35,002 package, please make sure that 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.css' is explicitly added 2026-02-14T09:51:35,002 to the `packages` configuration field. 2026-02-14T09:51:35,003 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:35,003 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:35,004 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:35,005 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:35,006 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:35,006 If you don't want 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.css' to be distributed and are 2026-02-14T09:51:35,007 already explicitly excluding 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.css' via 2026-02-14T09:51:35,008 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:35,008 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:35,009 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:35,009 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:35,010 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:35,012 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:35,012 even if it does not contain any `.py` files. 2026-02-14T09:51:35,013 On the other hand, currently there is no concept of package data 2026-02-14T09:51:35,014 directory, all directories are treated like packages. 2026-02-14T09:51:35,014 ******************************************************************************** 2026-02-14T09:51:35,015 !! 2026-02-14T09:51:35,016 check.warn(importable) 2026-02-14T09:51:35,016 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.img' is absent from the `packages` configuration. 2026-02-14T09:51:35,017 !! 2026-02-14T09:51:35,018 ******************************************************************************** 2026-02-14T09:51:35,018 ############################ 2026-02-14T09:51:35,019 # Package would be ignored # 2026-02-14T09:51:35,020 ############################ 2026-02-14T09:51:35,020 Python recognizes 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.img' as an importable package[^1], 2026-02-14T09:51:35,021 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:35,022 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:35,022 package, please make sure that 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.img' is explicitly added 2026-02-14T09:51:35,023 to the `packages` configuration field. 2026-02-14T09:51:35,024 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:35,025 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:35,025 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:35,026 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:35,027 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:35,029 If you don't want 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.img' to be distributed and are 2026-02-14T09:51:35,029 already explicitly excluding 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.img' via 2026-02-14T09:51:35,029 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:35,030 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:35,030 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:35,031 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:35,032 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:35,033 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:35,034 even if it does not contain any `.py` files. 2026-02-14T09:51:35,034 On the other hand, currently there is no concept of package data 2026-02-14T09:51:35,035 directory, all directories are treated like packages. 2026-02-14T09:51:35,035 ******************************************************************************** 2026-02-14T09:51:35,036 !! 2026-02-14T09:51:35,036 check.warn(importable) 2026-02-14T09:51:35,037 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.js' is absent from the `packages` configuration. 2026-02-14T09:51:35,038 !! 2026-02-14T09:51:35,039 ******************************************************************************** 2026-02-14T09:51:35,040 ############################ 2026-02-14T09:51:35,040 # Package would be ignored # 2026-02-14T09:51:35,041 ############################ 2026-02-14T09:51:35,042 Python recognizes 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.js' as an importable package[^1], 2026-02-14T09:51:35,043 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:35,044 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:35,045 package, please make sure that 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.js' is explicitly added 2026-02-14T09:51:35,046 to the `packages` configuration field. 2026-02-14T09:51:35,048 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:35,048 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:35,049 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:35,051 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:35,053 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:35,055 If you don't want 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.js' to be distributed and are 2026-02-14T09:51:35,056 already explicitly excluding 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.js' via 2026-02-14T09:51:35,056 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:35,057 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:35,058 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:35,060 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:35,063 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:35,066 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:35,067 even if it does not contain any `.py` files. 2026-02-14T09:51:35,068 On the other hand, currently there is no concept of package data 2026-02-14T09:51:35,071 directory, all directories are treated like packages. 2026-02-14T09:51:35,115 ******************************************************************************** 2026-02-14T09:51:35,117 !! 2026-02-14T09:51:35,118 check.warn(importable) 2026-02-14T09:51:35,120 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.app.static.app.demo' is absent from the `packages` configuration. 2026-02-14T09:51:35,179 !! 2026-02-14T09:51:35,186 ******************************************************************************** 2026-02-14T09:51:35,189 ############################ 2026-02-14T09:51:35,195 # Package would be ignored # 2026-02-14T09:51:35,197 ############################ 2026-02-14T09:51:35,198 Python recognizes 'rna_tools.tools.webserver-engine.app.static.app.demo' as an importable package[^1], 2026-02-14T09:51:35,200 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:35,206 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:35,206 package, please make sure that 'rna_tools.tools.webserver-engine.app.static.app.demo' is explicitly added 2026-02-14T09:51:35,208 to the `packages` configuration field. 2026-02-14T09:51:35,211 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:35,216 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:35,217 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:35,223 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:35,227 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:35,230 If you don't want 'rna_tools.tools.webserver-engine.app.static.app.demo' to be distributed and are 2026-02-14T09:51:35,231 already explicitly excluding 'rna_tools.tools.webserver-engine.app.static.app.demo' via 2026-02-14T09:51:35,232 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:35,233 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:35,235 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:35,237 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:35,239 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:35,242 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:35,244 even if it does not contain any `.py` files. 2026-02-14T09:51:35,244 On the other hand, currently there is no concept of package data 2026-02-14T09:51:35,245 directory, all directories are treated like packages. 2026-02-14T09:51:35,246 ******************************************************************************** 2026-02-14T09:51:35,249 !! 2026-02-14T09:51:35,252 check.warn(importable) 2026-02-14T09:51:35,253 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.app.static.app.dropzone' is absent from the `packages` configuration. 2026-02-14T09:51:35,256 !! 2026-02-14T09:51:35,259 ******************************************************************************** 2026-02-14T09:51:35,260 ############################ 2026-02-14T09:51:35,261 # Package would be ignored # 2026-02-14T09:51:35,262 ############################ 2026-02-14T09:51:35,263 Python recognizes 'rna_tools.tools.webserver-engine.app.static.app.dropzone' as an importable package[^1], 2026-02-14T09:51:35,265 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:35,267 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:35,268 package, please make sure that 'rna_tools.tools.webserver-engine.app.static.app.dropzone' is explicitly added 2026-02-14T09:51:35,269 to the `packages` configuration field. 2026-02-14T09:51:35,271 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:35,272 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:35,273 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:35,275 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:35,277 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:35,279 If you don't want 'rna_tools.tools.webserver-engine.app.static.app.dropzone' to be distributed and are 2026-02-14T09:51:35,280 already explicitly excluding 'rna_tools.tools.webserver-engine.app.static.app.dropzone' via 2026-02-14T09:51:35,281 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:35,282 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:35,283 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:35,285 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:35,287 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:35,290 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:35,291 even if it does not contain any `.py` files. 2026-02-14T09:51:35,292 On the other hand, currently there is no concept of package data 2026-02-14T09:51:35,293 directory, all directories are treated like packages. 2026-02-14T09:51:35,295 ******************************************************************************** 2026-02-14T09:51:35,297 !! 2026-02-14T09:51:35,298 check.warn(importable) 2026-02-14T09:51:35,299 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.app.static.app.help' is absent from the `packages` configuration. 2026-02-14T09:51:35,300 !! 2026-02-14T09:51:35,302 ******************************************************************************** 2026-02-14T09:51:35,303 ############################ 2026-02-14T09:51:35,304 # Package would be ignored # 2026-02-14T09:51:35,306 ############################ 2026-02-14T09:51:35,307 Python recognizes 'rna_tools.tools.webserver-engine.app.static.app.help' as an importable package[^1], 2026-02-14T09:51:35,308 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:35,565 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:35,566 package, please make sure that 'rna_tools.tools.webserver-engine.app.static.app.help' is explicitly added 2026-02-14T09:51:35,567 to the `packages` configuration field. 2026-02-14T09:51:35,570 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:35,571 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:35,572 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:35,574 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:35,576 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:35,579 If you don't want 'rna_tools.tools.webserver-engine.app.static.app.help' to be distributed and are 2026-02-14T09:51:35,580 already explicitly excluding 'rna_tools.tools.webserver-engine.app.static.app.help' via 2026-02-14T09:51:35,582 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:35,583 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:35,584 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:35,586 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:35,588 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:35,590 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:35,591 even if it does not contain any `.py` files. 2026-02-14T09:51:35,591 On the other hand, currently there is no concept of package data 2026-02-14T09:51:35,592 directory, all directories are treated like packages. 2026-02-14T09:51:35,593 ******************************************************************************** 2026-02-14T09:51:35,595 !! 2026-02-14T09:51:35,595 check.warn(importable) 2026-02-14T09:51:35,596 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.app.static.app.img' is absent from the `packages` configuration. 2026-02-14T09:51:35,597 !! 2026-02-14T09:51:35,598 ******************************************************************************** 2026-02-14T09:51:35,599 ############################ 2026-02-14T09:51:35,600 # Package would be ignored # 2026-02-14T09:51:35,600 ############################ 2026-02-14T09:51:35,601 Python recognizes 'rna_tools.tools.webserver-engine.app.static.app.img' as an importable package[^1], 2026-02-14T09:51:35,602 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:35,603 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:35,604 package, please make sure that 'rna_tools.tools.webserver-engine.app.static.app.img' is explicitly added 2026-02-14T09:51:35,605 to the `packages` configuration field. 2026-02-14T09:51:35,607 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:35,607 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:35,608 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:35,610 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:35,612 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:35,613 If you don't want 'rna_tools.tools.webserver-engine.app.static.app.img' to be distributed and are 2026-02-14T09:51:35,614 already explicitly excluding 'rna_tools.tools.webserver-engine.app.static.app.img' via 2026-02-14T09:51:35,615 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:35,616 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:35,616 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:35,618 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:35,620 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:35,625 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:35,626 even if it does not contain any `.py` files. 2026-02-14T09:51:35,627 On the other hand, currently there is no concept of package data 2026-02-14T09:51:35,628 directory, all directories are treated like packages. 2026-02-14T09:51:35,629 ******************************************************************************** 2026-02-14T09:51:35,631 !! 2026-02-14T09:51:35,631 check.warn(importable) 2026-02-14T09:51:35,632 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.app.templates' is absent from the `packages` configuration. 2026-02-14T09:51:35,633 !! 2026-02-14T09:51:35,634 ******************************************************************************** 2026-02-14T09:51:35,635 ############################ 2026-02-14T09:51:35,636 # Package would be ignored # 2026-02-14T09:51:35,636 ############################ 2026-02-14T09:51:35,637 Python recognizes 'rna_tools.tools.webserver-engine.app.templates' as an importable package[^1], 2026-02-14T09:51:35,637 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:35,639 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:35,640 package, please make sure that 'rna_tools.tools.webserver-engine.app.templates' is explicitly added 2026-02-14T09:51:35,641 to the `packages` configuration field. 2026-02-14T09:51:35,642 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:35,643 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:35,644 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:35,646 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:35,648 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:35,649 If you don't want 'rna_tools.tools.webserver-engine.app.templates' to be distributed and are 2026-02-14T09:51:35,650 already explicitly excluding 'rna_tools.tools.webserver-engine.app.templates' via 2026-02-14T09:51:35,650 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:35,651 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:35,652 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:35,654 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:35,655 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:35,658 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:35,659 even if it does not contain any `.py` files. 2026-02-14T09:51:35,660 On the other hand, currently there is no concept of package data 2026-02-14T09:51:35,660 directory, all directories are treated like packages. 2026-02-14T09:51:35,661 ******************************************************************************** 2026-02-14T09:51:35,663 !! 2026-02-14T09:51:35,663 check.warn(importable) 2026-02-14T09:51:35,664 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.app.templates.archive' is absent from the `packages` configuration. 2026-02-14T09:51:35,665 !! 2026-02-14T09:51:35,667 ******************************************************************************** 2026-02-14T09:51:35,667 ############################ 2026-02-14T09:51:35,668 # Package would be ignored # 2026-02-14T09:51:35,669 ############################ 2026-02-14T09:51:35,670 Python recognizes 'rna_tools.tools.webserver-engine.app.templates.archive' as an importable package[^1], 2026-02-14T09:51:35,671 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:35,672 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:35,673 package, please make sure that 'rna_tools.tools.webserver-engine.app.templates.archive' is explicitly added 2026-02-14T09:51:35,674 to the `packages` configuration field. 2026-02-14T09:51:35,676 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:35,676 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:35,677 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:35,678 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:35,680 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:35,681 If you don't want 'rna_tools.tools.webserver-engine.app.templates.archive' to be distributed and are 2026-02-14T09:51:35,682 already explicitly excluding 'rna_tools.tools.webserver-engine.app.templates.archive' via 2026-02-14T09:51:35,682 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:35,683 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:35,683 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:35,684 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:35,685 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:35,686 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:35,687 even if it does not contain any `.py` files. 2026-02-14T09:51:35,687 On the other hand, currently there is no concept of package data 2026-02-14T09:51:35,688 directory, all directories are treated like packages. 2026-02-14T09:51:35,688 ******************************************************************************** 2026-02-14T09:51:35,689 !! 2026-02-14T09:51:35,690 check.warn(importable) 2026-02-14T09:51:35,690 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.django_extensions.css' is absent from the `packages` configuration. 2026-02-14T09:51:35,691 !! 2026-02-14T09:51:35,692 ******************************************************************************** 2026-02-14T09:51:35,692 ############################ 2026-02-14T09:51:35,693 # Package would be ignored # 2026-02-14T09:51:35,693 ############################ 2026-02-14T09:51:35,694 Python recognizes 'rna_tools.tools.webserver-engine.django_extensions.css' as an importable package[^1], 2026-02-14T09:51:35,695 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:35,697 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:35,697 package, please make sure that 'rna_tools.tools.webserver-engine.django_extensions.css' is explicitly added 2026-02-14T09:51:35,698 to the `packages` configuration field. 2026-02-14T09:51:35,699 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:35,699 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:35,700 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:35,701 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:35,702 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:35,704 If you don't want 'rna_tools.tools.webserver-engine.django_extensions.css' to be distributed and are 2026-02-14T09:51:35,704 already explicitly excluding 'rna_tools.tools.webserver-engine.django_extensions.css' via 2026-02-14T09:51:35,705 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:35,705 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:35,706 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:35,707 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:35,708 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:35,710 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:35,710 even if it does not contain any `.py` files. 2026-02-14T09:51:35,711 On the other hand, currently there is no concept of package data 2026-02-14T09:51:35,711 directory, all directories are treated like packages. 2026-02-14T09:51:35,712 ******************************************************************************** 2026-02-14T09:51:35,713 !! 2026-02-14T09:51:35,713 check.warn(importable) 2026-02-14T09:51:35,713 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.django_extensions.img' is absent from the `packages` configuration. 2026-02-14T09:51:35,714 !! 2026-02-14T09:51:35,715 ******************************************************************************** 2026-02-14T09:51:35,716 ############################ 2026-02-14T09:51:35,716 # Package would be ignored # 2026-02-14T09:51:35,717 ############################ 2026-02-14T09:51:35,717 Python recognizes 'rna_tools.tools.webserver-engine.django_extensions.img' as an importable package[^1], 2026-02-14T09:51:35,718 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:35,719 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:35,719 package, please make sure that 'rna_tools.tools.webserver-engine.django_extensions.img' is explicitly added 2026-02-14T09:51:35,720 to the `packages` configuration field. 2026-02-14T09:51:35,721 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:35,721 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:35,722 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:35,723 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:35,724 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:35,725 If you don't want 'rna_tools.tools.webserver-engine.django_extensions.img' to be distributed and are 2026-02-14T09:51:35,725 already explicitly excluding 'rna_tools.tools.webserver-engine.django_extensions.img' via 2026-02-14T09:51:35,726 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:35,726 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:35,727 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:35,728 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:35,729 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:35,732 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:35,733 even if it does not contain any `.py` files. 2026-02-14T09:51:35,734 On the other hand, currently there is no concept of package data 2026-02-14T09:51:35,735 directory, all directories are treated like packages. 2026-02-14T09:51:35,736 ******************************************************************************** 2026-02-14T09:51:35,737 !! 2026-02-14T09:51:35,738 check.warn(importable) 2026-02-14T09:51:35,739 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.django_extensions.js' is absent from the `packages` configuration. 2026-02-14T09:51:35,739 !! 2026-02-14T09:51:35,741 ******************************************************************************** 2026-02-14T09:51:35,741 ############################ 2026-02-14T09:51:35,742 # Package would be ignored # 2026-02-14T09:51:35,742 ############################ 2026-02-14T09:51:35,743 Python recognizes 'rna_tools.tools.webserver-engine.django_extensions.js' as an importable package[^1], 2026-02-14T09:51:35,744 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:35,745 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:35,746 package, please make sure that 'rna_tools.tools.webserver-engine.django_extensions.js' is explicitly added 2026-02-14T09:51:35,747 to the `packages` configuration field. 2026-02-14T09:51:35,748 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:35,749 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:35,749 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:35,750 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:35,751 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:35,753 If you don't want 'rna_tools.tools.webserver-engine.django_extensions.js' to be distributed and are 2026-02-14T09:51:35,754 already explicitly excluding 'rna_tools.tools.webserver-engine.django_extensions.js' via 2026-02-14T09:51:35,754 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:35,755 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:35,756 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:35,757 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:35,758 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:35,761 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:35,761 even if it does not contain any `.py` files. 2026-02-14T09:51:35,762 On the other hand, currently there is no concept of package data 2026-02-14T09:51:35,763 directory, all directories are treated like packages. 2026-02-14T09:51:35,764 ******************************************************************************** 2026-02-14T09:51:35,765 !! 2026-02-14T09:51:35,766 check.warn(importable) 2026-02-14T09:51:35,766 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.docs' is absent from the `packages` configuration. 2026-02-14T09:51:35,767 !! 2026-02-14T09:51:35,769 ******************************************************************************** 2026-02-14T09:51:35,770 ############################ 2026-02-14T09:51:35,778 # Package would be ignored # 2026-02-14T09:51:35,823 ############################ 2026-02-14T09:51:35,845 Python recognizes 'rna_tools.tools.webserver-engine.docs' as an importable package[^1], 2026-02-14T09:51:35,846 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:35,853 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:35,854 package, please make sure that 'rna_tools.tools.webserver-engine.docs' is explicitly added 2026-02-14T09:51:35,865 to the `packages` configuration field. 2026-02-14T09:51:35,897 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:35,907 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:35,929 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:35,936 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:35,941 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:35,947 If you don't want 'rna_tools.tools.webserver-engine.docs' to be distributed and are 2026-02-14T09:51:35,948 already explicitly excluding 'rna_tools.tools.webserver-engine.docs' via 2026-02-14T09:51:35,948 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:35,949 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:35,949 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:35,950 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:35,953 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:35,988 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:35,989 even if it does not contain any `.py` files. 2026-02-14T09:51:35,990 On the other hand, currently there is no concept of package data 2026-02-14T09:51:35,991 directory, all directories are treated like packages. 2026-02-14T09:51:35,991 ******************************************************************************** 2026-02-14T09:51:35,992 !! 2026-02-14T09:51:35,993 check.warn(importable) 2026-02-14T09:51:35,993 /tmp/pip-build-env-x5p4wdt_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.workflow' is absent from the `packages` configuration. 2026-02-14T09:51:35,994 !! 2026-02-14T09:51:35,995 ******************************************************************************** 2026-02-14T09:51:35,996 ############################ 2026-02-14T09:51:35,996 # Package would be ignored # 2026-02-14T09:51:35,997 ############################ 2026-02-14T09:51:35,997 Python recognizes 'rna_tools.tools.workflow' as an importable package[^1], 2026-02-14T09:51:35,998 but it is absent from setuptools' `packages` configuration. 2026-02-14T09:51:35,999 This leads to an ambiguous overall configuration. If you want to distribute this 2026-02-14T09:51:35,999 package, please make sure that 'rna_tools.tools.workflow' is explicitly added 2026-02-14T09:51:36,000 to the `packages` configuration field. 2026-02-14T09:51:36,001 Alternatively, you can also rely on setuptools' discovery methods 2026-02-14T09:51:36,002 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-02-14T09:51:36,002 instead of `find_packages(...)`/`find:`). 2026-02-14T09:51:36,003 You can read more about "package discovery" on setuptools documentation page: 2026-02-14T09:51:36,004 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-02-14T09:51:36,005 If you don't want 'rna_tools.tools.workflow' to be distributed and are 2026-02-14T09:51:36,006 already explicitly excluding 'rna_tools.tools.workflow' via 2026-02-14T09:51:36,006 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-02-14T09:51:36,007 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-02-14T09:51:36,007 combination with a more fine grained `package-data` configuration. 2026-02-14T09:51:36,008 You can read more about "package data files" on setuptools documentation page: 2026-02-14T09:51:36,010 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-02-14T09:51:36,011 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-02-14T09:51:36,012 even if it does not contain any `.py` files. 2026-02-14T09:51:36,012 On the other hand, currently there is no concept of package data 2026-02-14T09:51:36,012 directory, all directories are treated like packages. 2026-02-14T09:51:36,013 ******************************************************************************** 2026-02-14T09:51:36,014 !! 2026-02-14T09:51:36,014 check.warn(importable) 2026-02-14T09:51:36,015 Failed to load config from /tmp/pip-wheel-ahows7lm/rna-tools_f475ebc14f9a42a78ff866d43cba9dbd/pyproject.toml: 'tool' 2026-02-14T09:51:36,015 Try to load it from setup.cfg 2026-02-14T09:51:36,016 copying rna_tools/pytest.ini -> build/lib/rna_tools 2026-02-14T09:51:36,016 copying rna_tools/rchie.png -> build/lib/rna_tools 2026-02-14T09:51:36,017 copying rna_tools/shell_rc.sh -> build/lib/rna_tools 2026-02-14T09:51:36,019 copying rna_tools/test.sh -> build/lib/rna_tools 2026-02-14T09:51:36,024 creating build/lib/rna_tools/data 2026-02-14T09:51:36,029 copying rna_tools/data/260c8ff6-f24e-4eff-9760-1831407fc770_ALL_thrs5.30A_clust01-000001_AA.pdb -> build/lib/rna_tools/data 2026-02-14T09:51:36,029 copying rna_tools/data/A.pdb -> build/lib/rna_tools/data 2026-02-14T09:51:36,030 copying rna_tools/data/ACGU.pdb -> build/lib/rna_tools/data 2026-02-14T09:51:36,032 copying rna_tools/data/C.pdb -> build/lib/rna_tools/data 2026-02-14T09:51:36,032 copying rna_tools/data/G.pdb -> build/lib/rna_tools/data 2026-02-14T09:51:36,033 copying rna_tools/data/PO3_inner.pdb -> build/lib/rna_tools/data 2026-02-14T09:51:36,033 copying rna_tools/data/U.pdb -> build/lib/rna_tools/data 2026-02-14T09:51:36,034 copying rna_tools/data/o2prim.pdb -> build/lib/rna_tools/data 2026-02-14T09:51:36,035 copying rna_tools/data/op4.pdb -> build/lib/rna_tools/data 2026-02-14T09:51:36,036 copying rna_tools/data/pdb_ids.txt -> build/lib/rna_tools/data 2026-02-14T09:51:36,041 copying rna_tools/data/rna_pdb_errors.csv -> build/lib/rna_tools/data 2026-02-14T09:51:36,085 copying rna_tools/data/shape.txt -> build/lib/rna_tools/data 2026-02-14T09:51:36,086 creating build/lib/rna_tools/tests 2026-02-14T09:51:36,086 copying rna_tools/tests/test_eval.py -> build/lib/rna_tools/tests 2026-02-14T09:51:36,087 copying rna_tools/tests/test_rna_ss_pred.sh -> build/lib/rna_tools/tests 2026-02-14T09:51:36,087 copying rna_tools/tests/test_rnafold.py -> build/lib/rna_tools/tests 2026-02-14T09:51:36,088 copying rna_tools/tests/test_seq_cyclefold.py -> build/lib/rna_tools/tests 2026-02-14T09:51:36,088 copying rna_tools/tests/test_seq_mcfold.py -> build/lib/rna_tools/tests 2026-02-14T09:51:36,089 copying rna_tools/tests/test_seq_mcfold2.py -> build/lib/rna_tools/tests 2026-02-14T09:51:36,090 creating build/lib/rna_tools/tests/test_import_module 2026-02-14T09:51:36,092 copying rna_tools/tests/test_import_module/rchie.png -> build/lib/rna_tools/tests/test_import_module 2026-02-14T09:51:36,095 copying rna_tools/tests/test_import_module/test_import_rna_tools.py -> build/lib/rna_tools/tests/test_import_module 2026-02-14T09:51:36,098 creating build/lib/rna_tools/tests/test_import_module/test_data 2026-02-14T09:51:36,098 copying rna_tools/tests/test_import_module/test_data/RF00167.stockholm.sto -> build/lib/rna_tools/tests/test_import_module/test_data 2026-02-14T09:51:36,099 creating build/lib/rna_tools/tools/df 2026-02-14T09:51:36,099 copying rna_tools/tools/df/rna_df_concat.py -> build/lib/rna_tools/tools/df 2026-02-14T09:51:36,100 copying rna_tools/tools/df/rna_df_csv_sort.py -> build/lib/rna_tools/tools/df 2026-02-14T09:51:36,100 copying rna_tools/tools/df/rna_df_merge.py -> build/lib/rna_tools/tools/df 2026-02-14T09:51:36,101 copying rna_tools/tools/df/rna_df_merge_on.py -> build/lib/rna_tools/tools/df 2026-02-14T09:51:36,101 copying rna_tools/tools/df/rna_df_merge_two.py -> build/lib/rna_tools/tools/df 2026-02-14T09:51:36,102 copying rna_tools/tools/df/test.sh -> build/lib/rna_tools/tools/df 2026-02-14T09:51:36,102 creating build/lib/rna_tools/tools/df/test_data 2026-02-14T09:51:36,103 copying rna_tools/tools/df/test_data/cga_rmsd.csv -> build/lib/rna_tools/tools/df/test_data 2026-02-14T09:51:36,103 copying rna_tools/tools/df/test_data/cgc_rmsd.csv -> build/lib/rna_tools/tools/df/test_data 2026-02-14T09:51:36,104 copying rna_tools/tools/df/test_data/d3.csv -> build/lib/rna_tools/tools/df/test_data 2026-02-14T09:51:36,105 copying rna_tools/tools/df/test_data/d8.csv -> build/lib/rna_tools/tools/df/test_data 2026-02-14T09:51:36,105 copying rna_tools/tools/df/test_data/min_2.csv -> build/lib/rna_tools/tools/df/test_data 2026-02-14T09:51:36,106 copying rna_tools/tools/df/test_data/min_3.csv -> build/lib/rna_tools/tools/df/test_data 2026-02-14T09:51:36,106 copying rna_tools/tools/df/test_data/min_4.csv -> build/lib/rna_tools/tools/df/test_data 2026-02-14T09:51:36,107 copying rna_tools/tools/df/test_data/rna_df_concat.py -> build/lib/rna_tools/tools/df/test_data 2026-02-14T09:51:36,108 copying rna_tools/tools/df/test_data/rna_df_merge.csv -> build/lib/rna_tools/tools/df/test_data 2026-02-14T09:51:36,109 copying rna_tools/tools/df/test_data/rna_df_merge_on.csv -> build/lib/rna_tools/tools/df/test_data 2026-02-14T09:51:36,111 creating build/lib/rna_tools/tools/proteins 2026-02-14T09:51:36,113 copying rna_tools/tools/proteins/1djf.pdb -> build/lib/rna_tools/tools/proteins 2026-02-14T09:51:36,113 copying rna_tools/tools/proteins/calc_distances.py -> build/lib/rna_tools/tools/proteins 2026-02-14T09:51:36,114 copying rna_tools/tools/proteins/test.sh -> build/lib/rna_tools/tools/proteins 2026-02-14T09:51:36,114 copying rna_tools/tools/proteins/u2-u6-cwc15-trim2_proteinOnly.pdb -> build/lib/rna_tools/tools/proteins 2026-02-14T09:51:36,115 creating build/lib/rna_tools/tools/pymol_color_by_conserv 2026-02-14T09:51:36,116 copying rna_tools/tools/pymol_color_by_conserv/conserv_to_csv.py -> build/lib/rna_tools/tools/pymol_color_by_conserv 2026-02-14T09:51:36,117 copying rna_tools/tools/pymol_color_by_conserv/pymol_color_by_conserv.py -> build/lib/rna_tools/tools/pymol_color_by_conserv 2026-02-14T09:51:36,119 copying rna_tools/tools/pymol_color_by_conserv/readme.md -> build/lib/rna_tools/tools/pymol_color_by_conserv 2026-02-14T09:51:36,168 copying rna_tools/tools/pymol_color_by_conserv/test.sh -> build/lib/rna_tools/tools/pymol_color_by_conserv 2026-02-14T09:51:36,169 creating build/lib/rna_tools/tools/pymol_color_by_conserv/data 2026-02-14T09:51:36,170 creating build/lib/rna_tools/tools/pymol_color_by_conserv/data/cwc15 2026-02-14T09:51:36,170 copying rna_tools/tools/pymol_color_by_conserv/data/cwc15/cwc15.pml -> build/lib/rna_tools/tools/pymol_color_by_conserv/data/cwc15 2026-02-14T09:51:36,171 copying rna_tools/tools/pymol_color_by_conserv/data/cwc15/cwc15_consensus.csv -> build/lib/rna_tools/tools/pymol_color_by_conserv/data/cwc15 2026-02-14T09:51:36,171 copying rna_tools/tools/pymol_color_by_conserv/data/cwc15/cwc15_conserv.csv -> build/lib/rna_tools/tools/pymol_color_by_conserv/data/cwc15 2026-02-14T09:51:36,172 copying rna_tools/tools/pymol_color_by_conserv/data/cwc15/psiblast_8183496.aln -> build/lib/rna_tools/tools/pymol_color_by_conserv/data/cwc15 2026-02-14T09:51:36,173 creating build/lib/rna_tools/tools/pymol_color_by_conserv/docs 2026-02-14T09:51:36,173 copying rna_tools/tools/pymol_color_by_conserv/docs/consensus-file.png -> build/lib/rna_tools/tools/pymol_color_by_conserv/docs 2026-02-14T09:51:36,174 copying rna_tools/tools/pymol_color_by_conserv/docs/cwc15.png -> build/lib/rna_tools/tools/pymol_color_by_conserv/docs 2026-02-14T09:51:36,174 copying rna_tools/tools/pymol_color_by_conserv/docs/jalview.png -> build/lib/rna_tools/tools/pymol_color_by_conserv/docs 2026-02-14T09:51:36,175 creating build/lib/rna_tools/tools/pymol_preview_generator 2026-02-14T09:51:36,175 copying rna_tools/tools/pymol_preview_generator/pymol_preview_generator.py -> build/lib/rna_tools/tools/pymol_preview_generator 2026-02-14T09:51:36,176 copying rna_tools/tools/pymol_preview_generator/pymol_preview_install.py -> build/lib/rna_tools/tools/pymol_preview_generator 2026-02-14T09:51:36,177 copying rna_tools/tools/pymol_preview_generator/readme.md -> build/lib/rna_tools/tools/pymol_preview_generator 2026-02-14T09:51:36,177 creating build/lib/rna_tools/tools/pymol_preview_generator/bash 2026-02-14T09:51:36,177 creating build/lib/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow 2026-02-14T09:51:36,178 creating build/lib/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents 2026-02-14T09:51:36,178 copying rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents/Info.plist -> build/lib/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents 2026-02-14T09:51:36,179 copying rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents/document.wflow -> build/lib/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents 2026-02-14T09:51:36,179 creating build/lib/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents/QuickLook 2026-02-14T09:51:36,180 copying rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents/QuickLook/Thumbnail.png -> build/lib/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents/QuickLook 2026-02-14T09:51:36,180 creating build/lib/rna_tools/tools/pymol_preview_generator/docs 2026-02-14T09:51:36,181 copying rna_tools/tools/pymol_preview_generator/docs/demo.gif -> build/lib/rna_tools/tools/pymol_preview_generator/docs 2026-02-14T09:51:36,181 copying rna_tools/tools/pymol_preview_generator/docs/demo.png -> build/lib/rna_tools/tools/pymol_preview_generator/docs 2026-02-14T09:51:36,182 copying rna_tools/tools/pymol_preview_generator/docs/linux.png -> build/lib/rna_tools/tools/pymol_preview_generator/docs 2026-02-14T09:51:36,182 copying rna_tools/tools/pymol_preview_generator/docs/popup-ok.png -> build/lib/rna_tools/tools/pymol_preview_generator/docs 2026-02-14T09:51:36,183 copying rna_tools/tools/pymol_preview_generator/docs/popup-progress.png -> build/lib/rna_tools/tools/pymol_preview_generator/docs 2026-02-14T09:51:36,183 copying rna_tools/tools/pymol_preview_generator/docs/preview.png -> build/lib/rna_tools/tools/pymol_preview_generator/docs 2026-02-14T09:51:36,184 copying rna_tools/tools/pymol_preview_generator/docs/preview_2021-10-24_at_11.29.15.png -> build/lib/rna_tools/tools/pymol_preview_generator/docs 2026-02-14T09:51:36,184 creating build/lib/rna_tools/tools/pymol_preview_generator/zsh 2026-02-14T09:51:36,185 creating build/lib/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow 2026-02-14T09:51:36,185 creating build/lib/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents 2026-02-14T09:51:36,186 copying rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents/Info.plist -> build/lib/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents 2026-02-14T09:51:36,186 copying rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents/document.wflow -> build/lib/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents 2026-02-14T09:51:36,187 creating build/lib/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents/QuickLook 2026-02-14T09:51:36,188 copying rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents/QuickLook/Thumbnail.png -> build/lib/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents/QuickLook 2026-02-14T09:51:36,188 creating build/lib/rna_tools/tools/rna_binding_affinity 2026-02-14T09:51:36,189 copying rna_tools/tools/rna_binding_affinity/rna_dG2kd.py -> build/lib/rna_tools/tools/rna_binding_affinity 2026-02-14T09:51:36,189 copying rna_tools/tools/rna_binding_affinity/rna_kd2dG.py -> build/lib/rna_tools/tools/rna_binding_affinity 2026-02-14T09:51:36,190 copying rna_tools/tools/rna_binding_affinity/rna_kd2pkd.py -> build/lib/rna_tools/tools/rna_binding_affinity 2026-02-14T09:51:36,192 copying rna_tools/tools/rna_binding_affinity/rna_pkd2dG.py -> build/lib/rna_tools/tools/rna_binding_affinity 2026-02-14T09:51:36,194 copying rna_tools/tools/rna_binding_affinity/rna_pkd2kd.py -> build/lib/rna_tools/tools/rna_binding_affinity 2026-02-14T09:51:36,196 copying rna_tools/tools/rna_binding_affinity/test.sh -> build/lib/rna_tools/tools/rna_binding_affinity 2026-02-14T09:51:36,198 creating build/lib/rna_tools/tools/rna_calc_gdt 2026-02-14T09:51:36,198 copying rna_tools/tools/rna_calc_gdt/rna_calc_gdt.py -> build/lib/rna_tools/tools/rna_calc_gdt 2026-02-14T09:51:36,201 copying rna_tools/tools/rna_calc_gdt/test.sh -> build/lib/rna_tools/tools/rna_calc_gdt 2026-02-14T09:51:36,202 creating build/lib/rna_tools/tools/rna_calc_hbonds 2026-02-14T09:51:36,203 copying rna_tools/tools/rna_calc_hbonds/mdanalysis_hbonds.py -> build/lib/rna_tools/tools/rna_calc_hbonds 2026-02-14T09:51:36,206 copying rna_tools/tools/rna_calc_hbonds/mdtraj_hbonds.py -> build/lib/rna_tools/tools/rna_calc_hbonds 2026-02-14T09:51:36,208 copying rna_tools/tools/rna_calc_hbonds/pymol_list_hbonds.py -> build/lib/rna_tools/tools/rna_calc_hbonds 2026-02-14T09:51:36,210 copying rna_tools/tools/rna_calc_hbonds/pytraj_hbond.py -> build/lib/rna_tools/tools/rna_calc_hbonds 2026-02-14T09:51:36,212 copying rna_tools/tools/rna_calc_hbonds/readme.md -> build/lib/rna_tools/tools/rna_calc_hbonds 2026-02-14T09:51:36,214 copying rna_tools/tools/rna_calc_hbonds/rna_calc_hbonds.py -> build/lib/rna_tools/tools/rna_calc_hbonds 2026-02-14T09:51:36,217 copying rna_tools/tools/rna_calc_hbonds/test.sh -> build/lib/rna_tools/tools/rna_calc_hbonds 2026-02-14T09:51:36,218 creating build/lib/rna_tools/tools/rna_calc_hbonds/docs 2026-02-14T09:51:36,219 copying rna_tools/tools/rna_calc_hbonds/docs/hbonds_pymol.jpg -> build/lib/rna_tools/tools/rna_calc_hbonds/docs 2026-02-14T09:51:36,225 creating build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2026-02-14T09:51:36,226 copying rna_tools/tools/rna_calc_hbonds/test_data/7jnh-AUA.csv -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2026-02-14T09:51:36,228 copying rna_tools/tools/rna_calc_hbonds/test_data/7jnh-AUA.pdb -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2026-02-14T09:51:36,231 copying rna_tools/tools/rna_calc_hbonds/test_data/7jnh-AUA_ha.csv -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2026-02-14T09:51:36,233 copying rna_tools/tools/rna_calc_hbonds/test_data/7jnh-AUA_ha.pdb -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2026-02-14T09:51:36,235 copying rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2026-02-14T09:51:36,238 copying rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr.pse -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2026-02-14T09:51:36,241 copying rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_addChimera.pdb -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2026-02-14T09:51:36,245 copying rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_addChimera_onlyBases.csv -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2026-02-14T09:51:36,247 copying rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_addChimera_onlyBases.pdb -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2026-02-14T09:51:36,249 copying rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_addh.pdb -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2026-02-14T09:51:36,252 copying rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_bases_only.pdb -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2026-02-14T09:51:36,254 copying rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_bases_only_addhpymol.pdb -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2026-02-14T09:51:36,256 creating build/lib/rna_tools/tools/rna_get_restraints 2026-02-14T09:51:36,257 copying rna_tools/tools/rna_get_restraints/.gitignore -> build/lib/rna_tools/tools/rna_get_restraints 2026-02-14T09:51:36,259 copying rna_tools/tools/rna_get_restraints/README.md -> build/lib/rna_tools/tools/rna_get_restraints 2026-02-14T09:51:36,261 copying rna_tools/tools/rna_get_restraints/rna_farna_get_restraints_vs_all.py -> build/lib/rna_tools/tools/rna_get_restraints 2026-02-14T09:51:36,263 copying rna_tools/tools/rna_get_restraints/rna_simrna_get_restraints_vs_all.py -> build/lib/rna_tools/tools/rna_get_restraints 2026-02-14T09:51:36,264 copying rna_tools/tools/rna_get_restraints/test.sh -> build/lib/rna_tools/tools/rna_get_restraints 2026-02-14T09:51:36,266 creating build/lib/rna_tools/tools/rna_multimodels 2026-02-14T09:51:36,267 copying rna_tools/tools/rna_multimodels/check.sh -> build/lib/rna_tools/tools/rna_multimodels 2026-02-14T09:51:36,269 copying rna_tools/tools/rna_multimodels/readme.md -> build/lib/rna_tools/tools/rna_multimodels 2026-02-14T09:51:36,271 copying rna_tools/tools/rna_multimodels/rna_pdb_merge_into_one.py -> build/lib/rna_tools/tools/rna_multimodels 2026-02-14T09:51:36,273 copying rna_tools/tools/rna_multimodels/test_util.py -> build/lib/rna_tools/tools/rna_multimodels 2026-02-14T09:51:36,275 creating build/lib/rna_tools/tools/rna_multimodels/data 2026-02-14T09:51:36,276 copying rna_tools/tools/rna_multimodels/data/rp17_n3_ideal.pdb -> build/lib/rna_tools/tools/rna_multimodels/data 2026-02-14T09:51:36,286 copying rna_tools/tools/rna_multimodels/data/seq.fa -> build/lib/rna_tools/tools/rna_multimodels/data 2026-02-14T09:51:36,288 creating build/lib/rna_tools/tools/rna_multimodels/test_in 2026-02-14T09:51:36,289 copying rna_tools/tools/rna_multimodels/test_in/17_Adamiak_1_rpr.pdb -> build/lib/rna_tools/tools/rna_multimodels/test_in 2026-02-14T09:51:36,294 copying rna_tools/tools/rna_multimodels/test_in/17_Bujnicki_1_rpr.pdb -> build/lib/rna_tools/tools/rna_multimodels/test_in 2026-02-14T09:51:36,298 copying rna_tools/tools/rna_multimodels/test_in/17_Chen_1_rpr.pdb -> build/lib/rna_tools/tools/rna_multimodels/test_in 2026-02-14T09:51:36,303 creating build/lib/rna_tools/tools/rna_multimodels/test_out 2026-02-14T09:51:36,304 copying rna_tools/tools/rna_multimodels/test_out/rp17.pdb -> build/lib/rna_tools/tools/rna_multimodels/test_out 2026-02-14T09:51:36,314 creating build/lib/rna_tools/tools/rna_rfam 2026-02-14T09:51:36,315 copying rna_tools/tools/rna_rfam/list.txt -> build/lib/rna_tools/tools/rna_rfam 2026-02-14T09:51:36,319 copying rna_tools/tools/rna_rfam/rna_download_rfam.py -> build/lib/rna_tools/tools/rna_rfam 2026-02-14T09:51:36,321 copying rna_tools/tools/rna_rfam/test.sh -> build/lib/rna_tools/tools/rna_rfam 2026-02-14T09:51:36,323 creating build/lib/rna_tools/tools/rna_seq_identity 2026-02-14T09:51:36,324 copying rna_tools/tools/rna_seq_identity/RF03167.cm -> build/lib/rna_tools/tools/rna_seq_identity 2026-02-14T09:51:36,327 copying rna_tools/tools/rna_seq_identity/output.sto -> build/lib/rna_tools/tools/rna_seq_identity 2026-02-14T09:51:36,330 copying rna_tools/tools/rna_seq_identity/pairwase.py -> build/lib/rna_tools/tools/rna_seq_identity 2026-02-14T09:51:36,332 copying rna_tools/tools/rna_seq_identity/readme.md -> build/lib/rna_tools/tools/rna_seq_identity 2026-02-14T09:51:36,334 copying rna_tools/tools/rna_seq_identity/seq1.fa -> build/lib/rna_tools/tools/rna_seq_identity 2026-02-14T09:51:36,336 copying rna_tools/tools/rna_seq_identity/seq12.fa -> build/lib/rna_tools/tools/rna_seq_identity 2026-02-14T09:51:36,338 copying rna_tools/tools/rna_seq_identity/seq2.fa -> build/lib/rna_tools/tools/rna_seq_identity 2026-02-14T09:51:36,340 copying rna_tools/tools/rna_seq_identity/test.sh -> build/lib/rna_tools/tools/rna_seq_identity 2026-02-14T09:51:36,342 creating build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6 2026-02-14T09:51:36,343 copying rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/select_seq_fromBLAStn_6outfm.py -> build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6 2026-02-14T09:51:36,346 copying rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test.sh -> build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6 2026-02-14T09:51:36,348 creating build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data 2026-02-14T09:51:36,348 copying rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data/db_nt.fasta -> build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data 2026-02-14T09:51:36,351 copying rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data/db_nt_out.fasta -> build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data 2026-02-14T09:51:36,352 copying rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data/output_55 -> build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data 2026-02-14T09:51:36,354 creating build/lib/rna_tools/tools/rnapuzzle_sender 2026-02-14T09:51:36,355 copying rna_tools/tools/rnapuzzle_sender/.gitignore -> build/lib/rna_tools/tools/rnapuzzle_sender 2026-02-14T09:51:36,357 copying rna_tools/tools/rnapuzzle_sender/rnapuzzle_sender.py -> build/lib/rna_tools/tools/rnapuzzle_sender 2026-02-14T09:51:36,359 copying rna_tools/tools/rnapuzzle_sender/test.sh -> build/lib/rna_tools/tools/rnapuzzle_sender 2026-02-14T09:51:36,361 creating build/lib/rna_tools/tools/rnapuzzle_sender/files 2026-02-14T09:51:36,362 copying rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank1.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/files 2026-02-14T09:51:36,366 copying rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank10.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/files 2026-02-14T09:51:36,371 copying rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank2.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/files 2026-02-14T09:51:36,376 copying rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank3.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/files 2026-02-14T09:51:36,380 copying rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank4.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/files 2026-02-14T09:51:36,385 copying rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank5.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/files 2026-02-14T09:51:36,390 copying rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank6.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/files 2026-02-14T09:51:36,396 copying rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank7.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/files 2026-02-14T09:51:36,402 copying rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank8.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/files 2026-02-14T09:51:36,408 copying rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank9.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/files 2026-02-14T09:51:36,414 creating build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content 2026-02-14T09:51:36,415 copying rna_tools/tools/rnapuzzle_sender/test_of_email_content/model1.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content 2026-02-14T09:51:36,424 copying rna_tools/tools/rnapuzzle_sender/test_of_email_content/test.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content 2026-02-14T09:51:36,470 copying rna_tools/tools/rnapuzzle_sender/test_of_email_content/test.txt -> build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content 2026-02-14T09:51:36,513 copying rna_tools/tools/rnapuzzle_sender/test_of_email_content/test02.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content 2026-02-14T09:51:36,519 copying rna_tools/tools/rnapuzzle_sender/test_of_email_content/test3.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content 2026-02-14T09:51:36,525 creating build/lib/rna_tools/tools/rnashape2ascii 2026-02-14T09:51:36,526 copying rna_tools/tools/rnashape2ascii/LICENSE -> build/lib/rna_tools/tools/rnashape2ascii 2026-02-14T09:51:36,529 copying rna_tools/tools/rnashape2ascii/README.md -> build/lib/rna_tools/tools/rnashape2ascii 2026-02-14T09:51:36,531 copying rna_tools/tools/rnashape2ascii/rnashape2ascii.py -> build/lib/rna_tools/tools/rnashape2ascii 2026-02-14T09:51:36,533 copying rna_tools/tools/rnashape2ascii/test.sh -> build/lib/rna_tools/tools/rnashape2ascii 2026-02-14T09:51:36,535 creating build/lib/rna_tools/tools/rnashape2ascii/test_data 2026-02-14T09:51:36,536 copying rna_tools/tools/rnashape2ascii/test_data/RNAPZ12_1M7_0000.rdat -> build/lib/rna_tools/tools/rnashape2ascii/test_data 2026-02-14T09:51:36,538 copying rna_tools/tools/rnashape2ascii/test_data/r1_raw.txt -> build/lib/rna_tools/tools/rnashape2ascii/test_data 2026-02-14T09:51:36,540 creating build/lib/rna_tools/tools/sandbox 2026-02-14T09:51:36,541 creating build/lib/rna_tools/tools/sandbox/rna_compare 2026-02-14T09:51:36,542 copying rna_tools/tools/sandbox/rna_compare/rmsds.csv -> build/lib/rna_tools/tools/sandbox/rna_compare 2026-02-14T09:51:36,544 copying rna_tools/tools/sandbox/rna_compare/rna_compare.py -> build/lib/rna_tools/tools/sandbox/rna_compare 2026-02-14T09:51:36,546 creating build/lib/rna_tools/tools/sandbox/rna_compare/test_data 2026-02-14T09:51:36,547 copying rna_tools/tools/sandbox/rna_compare/test_data/1y26_clean.pdb -> build/lib/rna_tools/tools/sandbox/rna_compare/test_data 2026-02-14T09:51:36,551 copying rna_tools/tools/sandbox/rna_compare/test_data/ade_pk_82a6_100low-000006_AA.pdb -> build/lib/rna_tools/tools/sandbox/rna_compare/test_data 2026-02-14T09:51:36,556 creating build/lib/rna_tools/tools/triplexibility 2026-02-14T09:51:36,557 copying rna_tools/tools/triplexibility/.gitignore -> build/lib/rna_tools/tools/triplexibility 2026-02-14T09:51:36,559 copying rna_tools/tools/triplexibility/download-all-pdbs.py -> build/lib/rna_tools/tools/triplexibility 2026-02-14T09:51:36,561 copying rna_tools/tools/triplexibility/download-all-triples.py -> build/lib/rna_tools/tools/triplexibility 2026-02-14T09:51:36,563 copying rna_tools/tools/triplexibility/download-all.py -> build/lib/rna_tools/tools/triplexibility 2026-02-14T09:51:36,565 copying rna_tools/tools/triplexibility/lib.py -> build/lib/rna_tools/tools/triplexibility 2026-02-14T09:51:36,568 copying rna_tools/tools/triplexibility/process_triple.py -> build/lib/rna_tools/tools/triplexibility 2026-02-14T09:51:36,570 copying rna_tools/tools/triplexibility/readme.md -> build/lib/rna_tools/tools/triplexibility 2026-02-14T09:51:36,572 copying rna_tools/tools/triplexibility/splix.py -> build/lib/rna_tools/tools/triplexibility 2026-02-14T09:51:36,574 copying rna_tools/tools/triplexibility/test.sh -> build/lib/rna_tools/tools/triplexibility 2026-02-14T09:51:36,576 copying rna_tools/tools/triplexibility/test_all.sh -> build/lib/rna_tools/tools/triplexibility 2026-02-14T09:51:36,578 copying rna_tools/tools/triplexibility/triple-db.csv -> build/lib/rna_tools/tools/triplexibility 2026-02-14T09:51:36,585 copying rna_tools/tools/triplexibility/triplexibility.py -> build/lib/rna_tools/tools/triplexibility 2026-02-14T09:51:36,588 copying rna_tools/tools/triplexibility/triplexibility2.py -> build/lib/rna_tools/tools/triplexibility 2026-02-14T09:51:36,591 copying rna_tools/tools/triplexibility/trx-mutget-t1-1.py -> build/lib/rna_tools/tools/triplexibility 2026-02-14T09:51:36,593 copying rna_tools/tools/triplexibility/trx-mutget-t1-2.py -> build/lib/rna_tools/tools/triplexibility 2026-02-14T09:51:36,594 copying rna_tools/tools/triplexibility/trx.ipynb -> build/lib/rna_tools/tools/triplexibility 2026-02-14T09:51:36,596 copying rna_tools/tools/triplexibility/trx.py -> build/lib/rna_tools/tools/triplexibility 2026-02-14T09:51:36,599 copying rna_tools/tools/triplexibility/trx_analysis.py -> build/lib/rna_tools/tools/triplexibility 2026-02-14T09:51:36,601 copying rna_tools/tools/triplexibility/trx_analysis.txt -> build/lib/rna_tools/tools/triplexibility 2026-02-14T09:51:36,603 copying rna_tools/tools/triplexibility/trx_mutagen.py -> build/lib/rna_tools/tools/triplexibility 2026-02-14T09:51:36,605 copying rna_tools/tools/triplexibility/trx_mutagen_allvsall.py -> build/lib/rna_tools/tools/triplexibility 2026-02-14T09:51:36,607 copying rna_tools/tools/triplexibility/trx_score.py -> build/lib/rna_tools/tools/triplexibility 2026-02-14T09:51:36,610 copying rna_tools/tools/triplexibility/trx_score_allvsall.py -> build/lib/rna_tools/tools/triplexibility 2026-02-14T09:51:36,612 copying rna_tools/tools/triplexibility/trx_score_growth.py -> build/lib/rna_tools/tools/triplexibility 2026-02-14T09:51:36,613 copying rna_tools/tools/triplexibility/trx_score_onCol.py -> build/lib/rna_tools/tools/triplexibility 2026-02-14T09:51:36,616 copying rna_tools/tools/triplexibility/trx_score_onCol_allvsall.py -> build/lib/rna_tools/tools/triplexibility 2026-02-14T09:51:36,618 creating build/lib/rna_tools/tools/triplexibility/data 2026-02-14T09:51:36,618 copying rna_tools/tools/triplexibility/data/XcWWX.csv -> build/lib/rna_tools/tools/triplexibility/data 2026-02-14T09:51:36,620 copying rna_tools/tools/triplexibility/data/cWW_cHS_GCU.csv -> build/lib/rna_tools/tools/triplexibility/data 2026-02-14T09:51:36,622 copying rna_tools/tools/triplexibility/data/db.csv -> build/lib/rna_tools/tools/triplexibility/data 2026-02-14T09:51:36,624 copying rna_tools/tools/triplexibility/data/db_trx2.csv -> build/lib/rna_tools/tools/triplexibility/data 2026-02-14T09:51:36,626 copying rna_tools/tools/triplexibility/data/t1-1-Triple_cWW_cHS_GCU_exemplar_rpr_fx.csv -> build/lib/rna_tools/tools/triplexibility/data 2026-02-14T09:51:36,628 copying rna_tools/tools/triplexibility/data/t1-1-Triple_cWW_cHS_GCU_exemplar_rpr_fx.pdb -> build/lib/rna_tools/tools/triplexibility/data 2026-02-14T09:51:36,631 creating build/lib/rna_tools/tools/triplexibility/db 2026-02-14T09:51:36,632 copying rna_tools/tools/triplexibility/db/gendb.py -> build/lib/rna_tools/tools/triplexibility/db 2026-02-14T09:51:36,634 creating build/lib/rna_tools/tools/workflow 2026-02-14T09:51:36,635 copying rna_tools/tools/workflow/README.md -> build/lib/rna_tools/tools/workflow 2026-02-14T09:51:36,637 copying rna_tools/tools/workflow/after_peyote_clean.sh -> build/lib/rna_tools/tools/workflow 2026-02-14T09:51:36,639 copying rna_tools/tools/workflow/automatix.py -> build/lib/rna_tools/tools/workflow 2026-02-14T09:51:36,641 copying rna_tools/tools/workflow/chunker.py -> build/lib/rna_tools/tools/workflow 2026-02-14T09:51:36,642 copying rna_tools/tools/workflow/clean.sh -> build/lib/rna_tools/tools/workflow 2026-02-14T09:51:36,644 copying rna_tools/tools/workflow/evox.py -> build/lib/rna_tools/tools/workflow 2026-02-14T09:51:36,646 copying rna_tools/tools/workflow/inf_all.py -> build/lib/rna_tools/tools/workflow 2026-02-14T09:51:36,648 copying rna_tools/tools/workflow/mass_inf.py -> build/lib/rna_tools/tools/workflow 2026-02-14T09:51:36,650 copying rna_tools/tools/workflow/mqaprna_massive_destruction.py -> build/lib/rna_tools/tools/workflow 2026-02-14T09:51:36,652 copying rna_tools/tools/workflow/mqaprna_run copy.sh -> build/lib/rna_tools/tools/workflow 2026-02-14T09:51:36,659 copying rna_tools/tools/workflow/mqaprna_run.sh -> build/lib/rna_tools/tools/workflow 2026-02-14T09:51:36,667 copying rna_tools/tools/workflow/pdb_list.txt -> build/lib/rna_tools/tools/workflow 2026-02-14T09:51:36,669 copying rna_tools/tools/workflow/rm_csvs_smaller_than_2k.sh -> build/lib/rna_tools/tools/workflow 2026-02-14T09:51:36,671 copying rna_tools/tools/workflow/rm_less_2k.sh -> build/lib/rna_tools/tools/workflow 2026-02-14T09:51:36,673 copying rna_tools/tools/workflow/rna_workflow.py -> build/lib/rna_tools/tools/workflow 2026-02-14T09:51:36,675 copying rna_tools/tools/workflow/rp13_automatix.py -> build/lib/rna_tools/tools/workflow 2026-02-14T09:51:36,677 copying rna_tools/tools/workflow/run -> build/lib/rna_tools/tools/workflow 2026-02-14T09:51:36,680 copying rna_tools/tools/workflow/run.sh -> build/lib/rna_tools/tools/workflow 2026-02-14T09:51:36,682 copying rna_tools/tools/workflow/run_1 -> build/lib/rna_tools/tools/workflow 2026-02-14T09:51:36,685 copying rna_tools/tools/workflow/test.sh -> build/lib/rna_tools/tools/workflow 2026-02-14T09:51:36,687 copying rna_tools/tools/workflow/xxdownload_job_and_process.py -> build/lib/rna_tools/tools/workflow 2026-02-14T09:51:36,689 copying rna_tools/tools/rna_calc_rmsd/README.md -> build/lib/rna_tools/tools/rna_calc_rmsd 2026-02-14T09:51:36,691 copying rna_tools/tools/rna_calc_rmsd/test.sh -> build/lib/rna_tools/tools/rna_calc_rmsd 2026-02-14T09:51:36,693 creating build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-02-14T09:51:36,694 copying rna_tools/tools/rna_calc_rmsd/test_data/21_solution_0_ChainA.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-02-14T09:51:36,696 copying rna_tools/tools/rna_calc_rmsd/test_data/21_solution_0_ChainB.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-02-14T09:51:36,698 copying rna_tools/tools/rna_calc_rmsd/test_data/21_solution_1_ChainA.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-02-14T09:51:36,700 copying rna_tools/tools/rna_calc_rmsd/test_data/21_solution_1_ChainB.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-02-14T09:51:36,702 copying rna_tools/tools/rna_calc_rmsd/test_data/21_solution_2.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-02-14T09:51:36,703 copying rna_tools/tools/rna_calc_rmsd/test_data/plot.ipynb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-02-14T09:51:36,708 copying rna_tools/tools/rna_calc_rmsd/test_data/rmsd_calc_dir.tsv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-02-14T09:51:36,710 copying rna_tools/tools/rna_calc_rmsd/test_data/rmsd_calc_dir_to_target.tsv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-02-14T09:51:36,711 copying rna_tools/tools/rna_calc_rmsd/test_data/rmsd_calc_dir_to_target_align.tsv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-02-14T09:51:36,713 copying rna_tools/tools/rna_calc_rmsd/test_data/rmsd_calc_dir_to_target_fit.tsv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-02-14T09:51:36,715 copying rna_tools/tools/rna_calc_rmsd/test_data/rna_calc_rmsd_multi_targets_output.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-02-14T09:51:36,717 copying rna_tools/tools/rna_calc_rmsd/test_data/struc1.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-02-14T09:51:36,721 copying rna_tools/tools/rna_calc_rmsd/test_data/struc2.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-02-14T09:51:36,725 copying rna_tools/tools/rna_calc_rmsd/test_data/struc3.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-02-14T09:51:36,729 copying rna_tools/tools/rna_calc_rmsd/test_data/struc4.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-02-14T09:51:36,733 creating build/lib/rna_tools/tools/rna_calc_rmsd/test_data/crops 2026-02-14T09:51:36,734 copying rna_tools/tools/rna_calc_rmsd/test_data/crops/3jbv_A.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/crops 2026-02-14T09:51:36,816 copying rna_tools/tools/rna_calc_rmsd/test_data/crops/3jbv_A_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/crops 2026-02-14T09:51:36,860 copying rna_tools/tools/rna_calc_rmsd/test_data/crops/rRNA_3jbv_A_PrepCaching_geo0_dmb20.0_fcd20.0_gpu1_cpu4_eblk24_blk4_bba1_Pem_rosettaViol0_bbbl0_ga1_n100_s49_df3-18b-fasr_one_prep_pred_3jbv_A_250.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/crops 2026-02-14T09:51:36,869 copying rna_tools/tools/rna_calc_rmsd/test_data/crops/rRNA_3jbv_A_PrepCaching_geo0_dmb20.0_fcd20.0_gpu1_cpu4_eblk24_blk4_bba1_Pem_rosettaViol0_bbbl0_ga1_n100_s49_df3-18b-fasr_one_prep_pred_3jbv_A_250_3.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/crops 2026-02-14T09:51:36,878 copying rna_tools/tools/rna_calc_rmsd/test_data/crops/rRNA_3jbv_A_PrepCaching_geo0_dmb20.0_fcd20.0_gpu1_cpu4_eblk24_blk4_bba1_Pem_rosettaViol0_bbbl0_ga1_n100_s49_df3-18b-fasr_one_prep_pred_3jbv_A_294.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/crops 2026-02-14T09:51:36,887 copying rna_tools/tools/rna_calc_rmsd/test_data/crops/seqs.fasta -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/crops 2026-02-14T09:51:36,890 creating build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets 2026-02-14T09:51:36,891 creating build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21 2026-02-14T09:51:36,892 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/21_3dRNA_1_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21 2026-02-14T09:51:36,896 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/21_Adamiak_1_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21 2026-02-14T09:51:36,899 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/21_ChenHighLig_1_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21 2026-02-14T09:51:36,903 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/21_Das_1_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21 2026-02-14T09:51:36,907 creating build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2026-02-14T09:51:36,908 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions/21_solution_0_ChainA.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2026-02-14T09:51:36,911 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions/21_solution_0_ChainB.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2026-02-14T09:51:36,915 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions/21_solution_1_ChainA.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2026-02-14T09:51:36,918 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions/21_solution_1_ChainB.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2026-02-14T09:51:36,922 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions/21_solution_2.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2026-02-14T09:51:36,926 creating build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7 2026-02-14T09:51:36,927 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/7.aln -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7 2026-02-14T09:51:36,929 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/7_solution_0.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7 2026-02-14T09:51:36,937 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/7_solution_1.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7 2026-02-14T09:51:36,944 creating build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/models 2026-02-14T09:51:36,945 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/models/7_Ding_1.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/models 2026-02-14T09:51:36,953 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/models/7_Major_1.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/models 2026-02-14T09:51:36,964 creating build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol 2026-02-14T09:51:36,965 copying rna_tools/tools/rna_calc_rmsd/test_data/pistol/5k7c_clean_onechain_renumber_as_puzzle_srr.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol 2026-02-14T09:51:36,970 creating build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters 2026-02-14T09:51:36,971 copying rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters/5k7c_clean_onechain_renumber_as_puzzle_srr.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters 2026-02-14T09:51:36,975 copying rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters/pistol_thrs0.50A_clust01-000001_AA.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters 2026-02-14T09:51:36,979 copying rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters/pistol_thrs0.50A_clust02-000001_AA.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters 2026-02-14T09:51:36,983 copying rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters/pistol_thrs0.50A_clust03-000001_AA.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters 2026-02-14T09:51:36,987 creating build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-02-14T09:51:36,988 copying rna_tools/tools/rna_calc_rmsd/test_data/ways/backbone+sugar.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-02-14T09:51:36,990 copying rna_tools/tools/rna_calc_rmsd/test_data/ways/rmsd.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-02-14T09:51:36,992 copying rna_tools/tools/rna_calc_rmsd/test_data/ways/rmsd_all.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-02-14T09:51:36,994 copying rna_tools/tools/rna_calc_rmsd/test_data/ways/rmsd_bases.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-02-14T09:51:36,995 copying rna_tools/tools/rna_calc_rmsd/test_data/ways/rmsd_c1p.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-02-14T09:51:36,997 copying rna_tools/tools/rna_calc_rmsd/test_data/ways/yC_5LJ3_U2U6_core_mdrFx_addh_MD_100.pdb_rpr.pdb_fixChains.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-02-14T09:51:37,001 copying rna_tools/tools/rna_calc_rmsd/test_data/ways/yC_5LJ3_U2U6_core_mdrFx_addh_MD_1_rpr_rchain.pdb_fixChains.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-02-14T09:51:37,005 copying rna_tools/tools/rna_calc_rmsd/test_data/ways/yC_5LJ3_U2U6_core_mdrFx_onlyTriplex_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-02-14T09:51:37,008 creating build/lib/rna_tools/tools/rna_calc_rmsd/test_output 2026-02-14T09:51:37,008 copying rna_tools/tools/rna_calc_rmsd/test_output/pistol_rmsd.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_output 2026-02-14T09:51:37,010 copying rna_tools/tools/rna_calc_rmsd/test_output/pistol_rmsd_name-rmsd-column.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_output 2026-02-14T09:51:37,012 copying rna_tools/tools/rna_calc_evo_rmsd/evoclust_rmsd.csv -> build/lib/rna_tools/tools/rna_calc_evo_rmsd 2026-02-14T09:51:37,015 copying rna_tools/tools/rna_calc_evo_rmsd/evoclust_rmsd.png -> build/lib/rna_tools/tools/rna_calc_evo_rmsd 2026-02-14T09:51:37,017 copying rna_tools/tools/rna_calc_evo_rmsd/output.txt -> build/lib/rna_tools/tools/rna_calc_evo_rmsd 2026-02-14T09:51:37,019 copying rna_tools/tools/rna_calc_evo_rmsd/readme.md -> build/lib/rna_tools/tools/rna_calc_evo_rmsd 2026-02-14T09:51:37,021 copying rna_tools/tools/rna_calc_evo_rmsd/test.sh -> build/lib/rna_tools/tools/rna_calc_evo_rmsd 2026-02-14T09:51:37,023 creating build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-02-14T09:51:37,024 copying rna_tools/tools/rna_calc_evo_rmsd/test_data/1ehz_std.pdb -> build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-02-14T09:51:37,029 copying rna_tools/tools/rna_calc_evo_rmsd/test_data/4qk8_cl.pdb -> build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-02-14T09:51:37,037 copying rna_tools/tools/rna_calc_evo_rmsd/test_data/4qlm_cl.pdb -> build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-02-14T09:51:37,044 copying rna_tools/tools/rna_calc_evo_rmsd/test_data/6Y2L_2_std.pdb -> build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-02-14T09:51:37,050 copying rna_tools/tools/rna_calc_evo_rmsd/test_data/aln.sto -> build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-02-14T09:51:37,052 copying rna_tools/tools/rna_calc_evo_rmsd/test_data/aln_nox.sto -> build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-02-14T09:51:37,054 copying rna_tools/tools/rna_calc_evo_rmsd/test_data/mapping.txt -> build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-02-14T09:51:37,056 copying rna_tools/tools/rna_calc_evo_rmsd/test_data/test.sh -> build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-02-14T09:51:37,058 copying rna_tools/tools/rna_calc_evo_rmsd/test_data/trna.sto -> build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-02-14T09:51:37,060 copying rna_tools/tools/rna_calc_evo_rmsd/test_data/trna_no_selector.sto -> build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-02-14T09:51:37,062 copying rna_tools/tools/rna_alignment/rna_alignment.ipynb -> build/lib/rna_tools/tools/rna_alignment 2026-02-14T09:51:37,174 copying rna_tools/tools/rna_alignment/rna_alignment_IA1.ipynb -> build/lib/rna_tools/tools/rna_alignment 2026-02-14T09:51:37,182 copying rna_tools/tools/rna_alignment/rna_alignment_IE2.ipynb -> build/lib/rna_tools/tools/rna_alignment 2026-02-14T09:51:37,196 copying rna_tools/tools/rna_alignment/test.sh -> build/lib/rna_tools/tools/rna_alignment 2026-02-14T09:51:37,198 copying rna_tools/tools/rna_alignment/test_rchie.sh -> build/lib/rna_tools/tools/rna_alignment 2026-02-14T09:51:37,200 creating build/lib/rna_tools/tools/rna_alignment/pngs 2026-02-14T09:51:37,201 copying rna_tools/tools/rna_alignment/pngs/rchie.png -> build/lib/rna_tools/tools/rna_alignment/pngs 2026-02-14T09:51:37,207 copying rna_tools/tools/rna_alignment/pngs/rscape.png -> build/lib/rna_tools/tools/rna_alignment/pngs 2026-02-14T09:51:37,210 creating build/lib/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:37,211 copying rna_tools/tools/rna_alignment/test_data/4lvv.seq -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:37,214 copying rna_tools/tools/rna_alignment/test_data/4lvv_RF01831_cmalign.txt -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:37,217 copying rna_tools/tools/rna_alignment/test_data/4lvv_cmalign.txt -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:37,220 copying rna_tools/tools/rna_alignment/test_data/IA1.gissd.sto -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:37,226 copying rna_tools/tools/rna_alignment/test_data/IE2.gissd.sto -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:37,229 copying rna_tools/tools/rna_alignment/test_data/RF00001.blocked.stk -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:37,237 copying rna_tools/tools/rna_alignment/test_data/RF00002.stockholm.stk -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:37,241 copying rna_tools/tools/rna_alignment/test_data/RF00167.stockholm.sto -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:37,243 copying rna_tools/tools/rna_alignment/test_data/RF00379.cm -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:37,248 copying rna_tools/tools/rna_alignment/test_data/RF00379.stockholm.stk -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:37,252 copying rna_tools/tools/rna_alignment/test_data/RF01831.cm -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:37,256 copying rna_tools/tools/rna_alignment/test_data/RF01831.short.stk -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:37,259 copying rna_tools/tools/rna_alignment/test_data/RF01831.stockholm.sto -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:37,262 copying rna_tools/tools/rna_alignment/test_data/RF02221.stockholm.sto -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:37,265 copying rna_tools/tools/rna_alignment/test_data/ade.fa -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:37,268 copying rna_tools/tools/rna_alignment/test_data/ade_gapped.fa -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:37,271 copying rna_tools/tools/rna_alignment/test_data/af27.fa -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:37,273 copying rna_tools/tools/rna_alignment/test_data/aln1.fasta -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:37,276 copying rna_tools/tools/rna_alignment/test_data/aln1_out.fasta -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:37,278 copying rna_tools/tools/rna_alignment/test_data/fasta.fasta -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:37,281 copying rna_tools/tools/rna_alignment/test_data/fasta_out.fasta -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:37,284 copying rna_tools/tools/rna_alignment/test_data/gmp.csv -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:37,286 copying rna_tools/tools/rna_alignment/test_data/gmp.sto -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:37,289 copying rna_tools/tools/rna_alignment/test_data/rfam_hit.txt -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:37,291 copying rna_tools/tools/rna_alignment/test_data/target.seq -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:37,293 copying rna_tools/tools/rna_alignment/test_data/u6_isl_rfam.sto -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:37,297 copying rna_tools/tools/rna_alignment/test_data/xrrna_rfam.sto -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:37,300 copying rna_tools/tools/rna_alignment/test_data/xx.fa -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:37,302 creating build/lib/rna_tools/tools/rna_alignment/test_data/foldability 2026-02-14T09:51:37,303 copying rna_tools/tools/rna_alignment/test_data/foldability/rp17_foldability.png -> build/lib/rna_tools/tools/rna_alignment/test_data/foldability 2026-02-14T09:51:37,312 creating build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files 2026-02-14T09:51:37,313 copying rna_tools/tools/rna_alignment/test_data/rchie_test_files/bpseq.txt -> build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files 2026-02-14T09:51:37,315 copying rna_tools/tools/rna_alignment/test_data/rchie_test_files/connect.txt -> build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files 2026-02-14T09:51:37,317 copying rna_tools/tools/rna_alignment/test_data/rchie_test_files/fasta.txt -> build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files 2026-02-14T09:51:37,319 copying rna_tools/tools/rna_alignment/test_data/rchie_test_files/helix.txt -> build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files 2026-02-14T09:51:37,321 copying rna_tools/tools/rna_alignment/test_data/rchie_test_files/vienna.txt -> build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files 2026-02-14T09:51:37,323 creating build/lib/rna_tools/tools/rna_alignment/test_output 2026-02-14T09:51:37,324 copying rna_tools/tools/rna_alignment/test_output/RF00167_subset.sto -> build/lib/rna_tools/tools/rna_alignment/test_output 2026-02-14T09:51:37,327 copying rna_tools/tools/rna_alignment/test_output/ade_gapped.fa -> build/lib/rna_tools/tools/rna_alignment/test_output 2026-02-14T09:51:37,329 copying rna_tools/tools/rna_alignment/test_output/mini.sto -> build/lib/rna_tools/tools/rna_alignment/test_output 2026-02-14T09:51:37,331 copying rna_tools/tools/rna_alignment/test_output/out.sto -> build/lib/rna_tools/tools/rna_alignment/test_output 2026-02-14T09:51:37,333 copying rna_tools/tools/rna_alignment/test_output/plot.png -> build/lib/rna_tools/tools/rna_alignment/test_output 2026-02-14T09:51:37,336 copying rna_tools/tools/rna_alignment/test_output/subset.sto -> build/lib/rna_tools/tools/rna_alignment/test_output 2026-02-14T09:51:37,339 copying rna_tools/tools/mini_moderna3/.coveragerc -> build/lib/rna_tools/tools/mini_moderna3 2026-02-14T09:51:37,341 copying rna_tools/tools/mini_moderna3/.gitignore -> build/lib/rna_tools/tools/mini_moderna3 2026-02-14T09:51:37,343 copying rna_tools/tools/mini_moderna3/.travis.yml -> build/lib/rna_tools/tools/mini_moderna3 2026-02-14T09:51:37,345 copying rna_tools/tools/mini_moderna3/AUTHORS.rst -> build/lib/rna_tools/tools/mini_moderna3 2026-02-14T09:51:37,347 copying rna_tools/tools/mini_moderna3/COPYING -> build/lib/rna_tools/tools/mini_moderna3 2026-02-14T09:51:37,350 copying rna_tools/tools/mini_moderna3/MANIFEST.in -> build/lib/rna_tools/tools/mini_moderna3 2026-02-14T09:51:37,352 copying rna_tools/tools/mini_moderna3/README.md -> build/lib/rna_tools/tools/mini_moderna3 2026-02-14T09:51:37,355 copying rna_tools/tools/pdbs_measure_atom_dists/test.sh -> build/lib/rna_tools/tools/pdbs_measure_atom_dists 2026-02-14T09:51:37,357 creating build/lib/rna_tools/tools/pdbs_measure_atom_dists/test_data 2026-02-14T09:51:37,358 copying rna_tools/tools/pdbs_measure_atom_dists/test_data/ALN_OBJ1_OBJ2.fa -> build/lib/rna_tools/tools/pdbs_measure_atom_dists/test_data 2026-02-14T09:51:37,360 copying rna_tools/tools/pdbs_measure_atom_dists/test_data/obj01.pdb -> build/lib/rna_tools/tools/pdbs_measure_atom_dists/test_data 2026-02-14T09:51:37,363 copying rna_tools/tools/pdbs_measure_atom_dists/test_data/obj02.pdb -> build/lib/rna_tools/tools/pdbs_measure_atom_dists/test_data 2026-02-14T09:51:37,367 copying rna_tools/tools/rna_pdb_merge_structure_with_fragments/README.md -> build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments 2026-02-14T09:51:37,369 creating build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data 2026-02-14T09:51:37,369 copying rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data/1xjr_root.pdb -> build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data 2026-02-14T09:51:37,373 copying rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data/1xjr_simrna_nstep_1.pdb -> build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data 2026-02-14T09:51:37,377 copying rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data/rna_sq_renumber.pdb -> build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data 2026-02-14T09:51:37,380 copying rna_tools/tools/misc/rna_ok -> build/lib/rna_tools/tools/misc 2026-02-14T09:51:37,383 copying rna_tools/tools/misc/test.sh -> build/lib/rna_tools/tools/misc 2026-02-14T09:51:37,385 copying rna_tools/tools/rna_pdb_edit_occupancy_bfactor/README.md -> build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor 2026-02-14T09:51:37,387 copying rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test.sh -> build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor 2026-02-14T09:51:37,389 creating build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data 2026-02-14T09:51:37,390 copying rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data/3w3s_homologymodel.pdb -> build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data 2026-02-14T09:51:37,395 copying rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data/3w3s_homologymodel_out.pdb -> build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data 2026-02-14T09:51:37,401 copying rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data/3w3s_homologymodel_select_atoms_out.pdb -> build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data 2026-02-14T09:51:37,407 copying rna_tools/tools/ClashCalc/.gitignore -> build/lib/rna_tools/tools/ClashCalc 2026-02-14T09:51:37,409 copying rna_tools/tools/ClashCalc/README.md -> build/lib/rna_tools/tools/ClashCalc 2026-02-14T09:51:37,411 creating build/lib/rna_tools/tools/ClashCalc/test_data 2026-02-14T09:51:37,412 copying rna_tools/tools/ClashCalc/test_data/no_clash.pdb -> build/lib/rna_tools/tools/ClashCalc/test_data 2026-02-14T09:51:37,431 copying rna_tools/tools/ClashCalc/test_data/prot-na_2392.pdb -> build/lib/rna_tools/tools/ClashCalc/test_data 2026-02-14T09:51:37,477 copying rna_tools/tools/ClashCalc/test_data/super_clash.pdb -> build/lib/rna_tools/tools/ClashCalc/test_data 2026-02-14T09:51:37,489 copying rna_tools/tools/rna_x3dna/readme.rst -> build/lib/rna_tools/tools/rna_x3dna 2026-02-14T09:51:37,491 copying rna_tools/tools/rna_x3dna/test.sh -> build/lib/rna_tools/tools/rna_x3dna 2026-02-14T09:51:37,493 creating build/lib/rna_tools/tools/rna_x3dna/test_data 2026-02-14T09:51:37,494 copying rna_tools/tools/rna_x3dna/test_data/1xjr.pdb -> build/lib/rna_tools/tools/rna_x3dna/test_data 2026-02-14T09:51:37,498 copying rna_tools/tools/rna_x3dna/test_data/1xjr_output.pdb -> build/lib/rna_tools/tools/rna_x3dna/test_data 2026-02-14T09:51:37,501 copying rna_tools/tools/rna_x3dna/test_data/6TNA.pdb -> build/lib/rna_tools/tools/rna_x3dna/test_data 2026-02-14T09:51:37,506 copying rna_tools/tools/rna_x3dna/test_data/CG.pdb -> build/lib/rna_tools/tools/rna_x3dna/test_data 2026-02-14T09:51:37,508 copying rna_tools/tools/rna_x3dna/test_data/rp2_bujnicki_1_rpr.pdb -> build/lib/rna_tools/tools/rna_x3dna/test_data 2026-02-14T09:51:37,513 copying rna_tools/tools/webserver-engine/.gitignore -> build/lib/rna_tools/tools/webserver-engine 2026-02-14T09:51:37,515 copying rna_tools/tools/webserver-engine/README.md -> build/lib/rna_tools/tools/webserver-engine 2026-02-14T09:51:37,518 copying rna_tools/tools/webserver-engine/ac -> build/lib/rna_tools/tools/webserver-engine 2026-02-14T09:51:37,520 copying rna_tools/tools/webserver-engine/checker.sh -> build/lib/rna_tools/tools/webserver-engine 2026-02-14T09:51:37,521 copying rna_tools/tools/webserver-engine/daemon.sh -> build/lib/rna_tools/tools/webserver-engine 2026-02-14T09:51:37,523 copying rna_tools/tools/webserver-engine/ddev.sh -> build/lib/rna_tools/tools/webserver-engine 2026-02-14T09:51:37,525 copying rna_tools/tools/webserver-engine/install.txt -> build/lib/rna_tools/tools/webserver-engine 2026-02-14T09:51:37,527 copying rna_tools/tools/webserver-engine/notes.md -> build/lib/rna_tools/tools/webserver-engine 2026-02-14T09:51:37,529 copying rna_tools/tools/webserver-engine/runme_dev.sh -> build/lib/rna_tools/tools/webserver-engine 2026-02-14T09:51:37,531 creating build/lib/rna_tools/tools/webserver-engine/admin 2026-02-14T09:51:37,532 creating build/lib/rna_tools/tools/webserver-engine/admin/css 2026-02-14T09:51:37,533 copying rna_tools/tools/webserver-engine/admin/css/base.css -> build/lib/rna_tools/tools/webserver-engine/admin/css 2026-02-14T09:51:37,536 copying rna_tools/tools/webserver-engine/admin/css/changelists.css -> build/lib/rna_tools/tools/webserver-engine/admin/css 2026-02-14T09:51:37,538 copying rna_tools/tools/webserver-engine/admin/css/dashboard.css -> build/lib/rna_tools/tools/webserver-engine/admin/css 2026-02-14T09:51:37,540 copying rna_tools/tools/webserver-engine/admin/css/forms.css -> build/lib/rna_tools/tools/webserver-engine/admin/css 2026-02-14T09:51:37,543 copying rna_tools/tools/webserver-engine/admin/css/ie.css -> build/lib/rna_tools/tools/webserver-engine/admin/css 2026-02-14T09:51:37,545 copying rna_tools/tools/webserver-engine/admin/css/rtl.css -> build/lib/rna_tools/tools/webserver-engine/admin/css 2026-02-14T09:51:37,548 copying rna_tools/tools/webserver-engine/admin/css/widgets.css -> build/lib/rna_tools/tools/webserver-engine/admin/css 2026-02-14T09:51:37,550 creating build/lib/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:37,551 copying rna_tools/tools/webserver-engine/admin/img/changelist-bg.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:37,553 copying rna_tools/tools/webserver-engine/admin/img/changelist-bg_rtl.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:37,556 copying rna_tools/tools/webserver-engine/admin/img/chooser-bg.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:37,558 copying rna_tools/tools/webserver-engine/admin/img/chooser_stacked-bg.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:37,560 copying rna_tools/tools/webserver-engine/admin/img/default-bg-reverse.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:37,562 copying rna_tools/tools/webserver-engine/admin/img/default-bg.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:37,564 copying rna_tools/tools/webserver-engine/admin/img/deleted-overlay.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:37,566 copying rna_tools/tools/webserver-engine/admin/img/icon-no.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:37,568 copying rna_tools/tools/webserver-engine/admin/img/icon-unknown.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:37,570 copying rna_tools/tools/webserver-engine/admin/img/icon-yes.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:37,572 copying rna_tools/tools/webserver-engine/admin/img/icon_addlink.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:37,573 copying rna_tools/tools/webserver-engine/admin/img/icon_alert.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:37,575 copying rna_tools/tools/webserver-engine/admin/img/icon_calendar.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:37,577 copying rna_tools/tools/webserver-engine/admin/img/icon_changelink.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:37,579 copying rna_tools/tools/webserver-engine/admin/img/icon_clock.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:37,581 copying rna_tools/tools/webserver-engine/admin/img/icon_deletelink.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:37,583 copying rna_tools/tools/webserver-engine/admin/img/icon_error.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:37,585 copying rna_tools/tools/webserver-engine/admin/img/icon_searchbox.png -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:37,587 copying rna_tools/tools/webserver-engine/admin/img/icon_success.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:37,589 copying rna_tools/tools/webserver-engine/admin/img/inline-delete-8bit.png -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:37,591 copying rna_tools/tools/webserver-engine/admin/img/inline-delete.png -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:37,593 copying rna_tools/tools/webserver-engine/admin/img/inline-restore-8bit.png -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:37,596 copying rna_tools/tools/webserver-engine/admin/img/inline-restore.png -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:37,598 copying rna_tools/tools/webserver-engine/admin/img/inline-splitter-bg.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:37,600 copying rna_tools/tools/webserver-engine/admin/img/nav-bg-grabber.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:37,602 copying rna_tools/tools/webserver-engine/admin/img/nav-bg-reverse.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:37,604 copying rna_tools/tools/webserver-engine/admin/img/nav-bg-selected.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:37,606 copying rna_tools/tools/webserver-engine/admin/img/nav-bg.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:37,608 copying rna_tools/tools/webserver-engine/admin/img/selector-icons.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:37,610 copying rna_tools/tools/webserver-engine/admin/img/selector-search.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:37,612 copying rna_tools/tools/webserver-engine/admin/img/sorting-icons.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:37,614 copying rna_tools/tools/webserver-engine/admin/img/tool-left.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:37,616 copying rna_tools/tools/webserver-engine/admin/img/tool-left_over.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:37,618 copying rna_tools/tools/webserver-engine/admin/img/tool-right.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:37,620 copying rna_tools/tools/webserver-engine/admin/img/tool-right_over.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:37,622 copying rna_tools/tools/webserver-engine/admin/img/tooltag-add.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:37,624 copying rna_tools/tools/webserver-engine/admin/img/tooltag-add_over.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:37,627 copying rna_tools/tools/webserver-engine/admin/img/tooltag-arrowright.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:37,629 copying rna_tools/tools/webserver-engine/admin/img/tooltag-arrowright_over.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:37,631 creating build/lib/rna_tools/tools/webserver-engine/admin/img/gis 2026-02-14T09:51:37,632 copying rna_tools/tools/webserver-engine/admin/img/gis/move_vertex_on.png -> build/lib/rna_tools/tools/webserver-engine/admin/img/gis 2026-02-14T09:51:37,634 creating build/lib/rna_tools/tools/webserver-engine/admin/js 2026-02-14T09:51:37,635 copying rna_tools/tools/webserver-engine/admin/js/LICENSE-JQUERY.txt -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-02-14T09:51:37,637 copying rna_tools/tools/webserver-engine/admin/js/SelectBox.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-02-14T09:51:37,639 copying rna_tools/tools/webserver-engine/admin/js/SelectFilter2.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-02-14T09:51:37,642 copying rna_tools/tools/webserver-engine/admin/js/actions.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-02-14T09:51:37,645 copying rna_tools/tools/webserver-engine/admin/js/actions.min.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-02-14T09:51:37,647 copying rna_tools/tools/webserver-engine/admin/js/calendar.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-02-14T09:51:37,649 copying rna_tools/tools/webserver-engine/admin/js/collapse.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-02-14T09:51:37,652 copying rna_tools/tools/webserver-engine/admin/js/collapse.min.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-02-14T09:51:37,654 copying rna_tools/tools/webserver-engine/admin/js/compress.py -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-02-14T09:51:37,656 copying rna_tools/tools/webserver-engine/admin/js/core.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-02-14T09:51:37,659 copying rna_tools/tools/webserver-engine/admin/js/getElementsBySelector.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-02-14T09:51:37,662 copying rna_tools/tools/webserver-engine/admin/js/inlines.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-02-14T09:51:37,664 copying rna_tools/tools/webserver-engine/admin/js/inlines.min.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-02-14T09:51:37,667 copying rna_tools/tools/webserver-engine/admin/js/jquery.init.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-02-14T09:51:37,669 copying rna_tools/tools/webserver-engine/admin/js/jquery.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-02-14T09:51:37,674 copying rna_tools/tools/webserver-engine/admin/js/jquery.min.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-02-14T09:51:37,677 copying rna_tools/tools/webserver-engine/admin/js/prepopulate.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-02-14T09:51:37,679 copying rna_tools/tools/webserver-engine/admin/js/prepopulate.min.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-02-14T09:51:37,681 copying rna_tools/tools/webserver-engine/admin/js/timeparse.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-02-14T09:51:37,683 copying rna_tools/tools/webserver-engine/admin/js/urlify.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-02-14T09:51:37,686 creating build/lib/rna_tools/tools/webserver-engine/admin/js/admin 2026-02-14T09:51:37,687 copying rna_tools/tools/webserver-engine/admin/js/admin/DateTimeShortcuts.js -> build/lib/rna_tools/tools/webserver-engine/admin/js/admin 2026-02-14T09:51:37,690 copying rna_tools/tools/webserver-engine/admin/js/admin/RelatedObjectLookups.js -> build/lib/rna_tools/tools/webserver-engine/admin/js/admin 2026-02-14T09:51:37,692 copying rna_tools/tools/webserver-engine/admin/js/admin/ordering.js -> build/lib/rna_tools/tools/webserver-engine/admin/js/admin 2026-02-14T09:51:37,694 creating build/lib/rna_tools/tools/webserver-engine/docs 2026-02-14T09:51:37,695 copying rna_tools/tools/webserver-engine/docs/admin.png -> build/lib/rna_tools/tools/webserver-engine/docs 2026-02-14T09:51:37,718 copying rna_tools/tools/webserver-engine/docs/demo.png -> build/lib/rna_tools/tools/webserver-engine/docs 2026-02-14T09:51:37,735 copying rna_tools/tools/simrna_trajectory/.gitignore -> build/lib/rna_tools/tools/simrna_trajectory 2026-02-14T09:51:37,737 copying rna_tools/tools/simrna_trajectory/subset.trafl -> build/lib/rna_tools/tools/simrna_trajectory 2026-02-14T09:51:37,753 creating build/lib/rna_tools/tools/simrna_trajectory/test_data 2026-02-14T09:51:37,754 copying rna_tools/tools/simrna_trajectory/test_data/mini.trafl -> build/lib/rna_tools/tools/simrna_trajectory/test_data 2026-02-14T09:51:37,757 copying rna_tools/tools/renum_pdb_to_aln/test.sh -> build/lib/rna_tools/tools/renum_pdb_to_aln 2026-02-14T09:51:37,759 creating build/lib/rna_tools/tools/renum_pdb_to_aln/test_data 2026-02-14T09:51:37,760 copying rna_tools/tools/renum_pdb_to_aln/test_data/ALN_OBJ1_OBJ2.fa -> build/lib/rna_tools/tools/renum_pdb_to_aln/test_data 2026-02-14T09:51:37,763 copying rna_tools/tools/renum_pdb_to_aln/test_data/obj01.pdb -> build/lib/rna_tools/tools/renum_pdb_to_aln/test_data 2026-02-14T09:51:37,765 copying rna_tools/tools/renum_pdb_to_aln/test_data/obj01_out.pdb -> build/lib/rna_tools/tools/renum_pdb_to_aln/test_data 2026-02-14T09:51:37,768 copying rna_tools/tools/rna_calc_inf/readme.md -> build/lib/rna_tools/tools/rna_calc_inf 2026-02-14T09:51:37,771 copying rna_tools/tools/rna_calc_inf/test.sh -> build/lib/rna_tools/tools/rna_calc_inf 2026-02-14T09:51:37,773 copying rna_tools/tools/rna_calc_inf/test_dinf.sh -> build/lib/rna_tools/tools/rna_calc_inf 2026-02-14T09:51:37,775 creating build/lib/rna_tools/tools/rna_calc_inf/doc 2026-02-14T09:51:37,776 copying rna_tools/tools/rna_calc_inf/doc/1y26_dinf.png -> build/lib/rna_tools/tools/rna_calc_inf/doc 2026-02-14T09:51:37,781 copying rna_tools/tools/rna_calc_inf/doc/1y26_dinf2.png -> build/lib/rna_tools/tools/rna_calc_inf/doc 2026-02-14T09:51:37,790 creating build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-02-14T09:51:37,791 copying rna_tools/tools/rna_calc_inf/test_data/13_0_solution_4XW7_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-02-14T09:51:37,795 copying rna_tools/tools/rna_calc_inf/test_data/13_Bujnicki_1_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-02-14T09:51:37,800 copying rna_tools/tools/rna_calc_inf/test_data/1Y26.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-02-14T09:51:37,804 copying rna_tools/tools/rna_calc_inf/test_data/1Y26_dinf -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-02-14T09:51:37,807 copying rna_tools/tools/rna_calc_inf/test_data/1Y26_dinf_comparison.txt -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-02-14T09:51:37,809 copying rna_tools/tools/rna_calc_inf/test_data/1prot.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-02-14T09:51:37,816 copying rna_tools/tools/rna_calc_inf/test_data/1y26X_M451.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-02-14T09:51:37,822 copying rna_tools/tools/rna_calc_inf/test_data/1y26X_M451_dinf -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-02-14T09:51:37,824 copying rna_tools/tools/rna_calc_inf/test_data/pistol.fa -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-02-14T09:51:37,826 copying rna_tools/tools/rna_calc_inf/test_data/pistol_inf_from_SeqSS.csv -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-02-14T09:51:37,828 copying rna_tools/tools/rna_calc_inf/test_data/pistol_inf_m1.csv -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-02-14T09:51:37,830 copying rna_tools/tools/rna_calc_inf/test_data/pistol_inf_m10.csv -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-02-14T09:51:37,833 copying rna_tools/tools/rna_calc_inf/test_data/pistol_inf_selection.csv -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-02-14T09:51:37,835 copying rna_tools/tools/rna_calc_inf/test_data/pistol_inf_stacking.csv -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-02-14T09:51:37,837 copying rna_tools/tools/rna_calc_inf/test_data/test.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-02-14T09:51:37,839 creating build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-02-14T09:51:37,840 copying rna_tools/tools/rna_calc_inf/test_data/rp13/13_0_solution_4XW7_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-02-14T09:51:37,844 copying rna_tools/tools/rna_calc_inf/test_data/rp13/13_0_solution_4XW7_rpr_del46-56.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-02-14T09:51:37,849 copying rna_tools/tools/rna_calc_inf/test_data/rp13/13_Adamiak_1_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-02-14T09:51:37,853 copying rna_tools/tools/rna_calc_inf/test_data/rp13/13_Adamiak_1_rpr_del46-56.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-02-14T09:51:37,857 copying rna_tools/tools/rna_calc_inf/test_data/rp13/13_Bujnicki_1_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-02-14T09:51:37,861 copying rna_tools/tools/rna_calc_inf/test_data/rp13/13_Bujnicki_1_rpr_del46-56.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-02-14T09:51:37,865 copying rna_tools/tools/rna_calc_inf/test_data/rp13/del.inf -> build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-02-14T09:51:37,867 copying rna_tools/tools/rna_calc_inf/test_data/rp13/inf.csv -> build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-02-14T09:51:37,869 copying rna_tools/tools/rna_calc_inf/test_data/rp13/orignal.inf -> build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-02-14T09:51:37,872 copying rna_tools/tools/rna_refinement/.gitignore -> build/lib/rna_tools/tools/rna_refinement 2026-02-14T09:51:37,874 copying rna_tools/tools/rna_refinement/test.sh -> build/lib/rna_tools/tools/rna_refinement 2026-02-14T09:51:37,876 creating build/lib/rna_tools/tools/rna_refinement/test_data 2026-02-14T09:51:37,877 copying rna_tools/tools/rna_refinement/test_data/179c48aa-c0d3-4bd6-8e06-12081da22998_ALL_thrs6.20A_clust01-000001_AA.pdb -> build/lib/rna_tools/tools/rna_refinement/test_data 2026-02-14T09:51:37,882 copying rna_tools/tools/rna_refinement/test_data/19_Bujnicki_Human_4_rpr_n0-000001.pdb_thrs0.50A_clust99-000001_AA.pdb -> build/lib/rna_tools/tools/rna_refinement/test_data 2026-02-14T09:51:37,888 copying rna_tools/tools/rna_refinement/test_data/19_Bujnicki_Human_4_rpr_n0-000001_refx.pdb_thrs0.50A_clust99-000001_AA_refx.pdb -> build/lib/rna_tools/tools/rna_refinement/test_data 2026-02-14T09:51:37,893 copying rna_tools/tools/rna_refinement/test_data/input.pdb -> build/lib/rna_tools/tools/rna_refinement/test_data 2026-02-14T09:51:37,897 copying rna_tools/tools/rna_refinement/test_data/input_refx.pdb -> build/lib/rna_tools/tools/rna_refinement/test_data 2026-02-14T09:51:37,903 copying rna_tools/tools/rna_refinement/test_data/output.pdb -> build/lib/rna_tools/tools/rna_refinement/test_data 2026-02-14T09:51:37,910 copying rna_tools/tools/rna_refinement/test_data/rp17_179c48aa-c0d3-4bd6-8e06-12081da22998_ALL_thrs6.20A_clust01-000001_AA._refx.pdb -> build/lib/rna_tools/tools/rna_refinement/test_data 2026-02-14T09:51:37,916 copying rna_tools/tools/rna_refinement/test_data/rp17_179c48aa-c0d3-4bd6-8e06-12081da22998_ALL_thrs6.20A_clust01-000001_AA._refx_refx.pdb -> build/lib/rna_tools/tools/rna_refinement/test_data 2026-02-14T09:51:37,923 copying rna_tools/tools/cluster_load/README.md -> build/lib/rna_tools/tools/cluster_load 2026-02-14T09:51:37,925 copying rna_tools/tools/cluster_load/load -> build/lib/rna_tools/tools/cluster_load 2026-02-14T09:51:37,928 copying rna_tools/tools/rna_convert_pseudoknot_formats/readme.md -> build/lib/rna_tools/tools/rna_convert_pseudoknot_formats 2026-02-14T09:51:37,930 copying rna_tools/tools/rna_convert_pseudoknot_formats/test.sh -> build/lib/rna_tools/tools/rna_convert_pseudoknot_formats 2026-02-14T09:51:37,932 creating build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/doc 2026-02-14T09:51:37,933 copying rna_tools/tools/rna_convert_pseudoknot_formats/doc/varna_2pk.png -> build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/doc 2026-02-14T09:51:37,938 creating build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/test_data 2026-02-14T09:51:37,939 copying rna_tools/tools/rna_convert_pseudoknot_formats/test_data/simrna.ss -> build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/test_data 2026-02-14T09:51:37,942 copying rna_tools/tools/rna_convert_pseudoknot_formats/test_data/simrna3.ss -> build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/test_data 2026-02-14T09:51:37,944 copying rna_tools/tools/rna_convert_pseudoknot_formats/test_data/simrna_2chains.ss -> build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/test_data 2026-02-14T09:51:37,946 copying rna_tools/tools/rna_convert_pseudoknot_formats/test_data/ss_with_pk.ss -> build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/test_data 2026-02-14T09:51:37,948 copying rna_tools/tools/rna_filter/.gitignore -> build/lib/rna_tools/tools/rna_filter 2026-02-14T09:51:37,951 copying rna_tools/tools/rna_filter/README.md -> build/lib/rna_tools/tools/rna_filter 2026-02-14T09:51:37,953 copying rna_tools/tools/rna_filter/test.sh -> build/lib/rna_tools/tools/rna_filter 2026-02-14T09:51:37,956 copying rna_tools/tools/rna_filter/test_dca.sh -> build/lib/rna_tools/tools/rna_filter 2026-02-14T09:51:37,958 creating build/lib/rna_tools/tools/rna_filter/test_data 2026-02-14T09:51:37,959 copying rna_tools/tools/rna_filter/test_data/CG.pdb -> build/lib/rna_tools/tools/rna_filter/test_data 2026-02-14T09:51:37,961 copying rna_tools/tools/rna_filter/test_data/CG.trafl -> build/lib/rna_tools/tools/rna_filter/test_data 2026-02-14T09:51:37,963 copying rna_tools/tools/rna_filter/test_data/restraints.txt -> build/lib/rna_tools/tools/rna_filter/test_data 2026-02-14T09:51:37,966 copying rna_tools/tools/rna_filter/test_data/rna_filter.txt -> build/lib/rna_tools/tools/rna_filter/test_data 2026-02-14T09:51:37,968 copying rna_tools/tools/plotting/test.sh -> build/lib/rna_tools/tools/plotting 2026-02-14T09:51:37,970 creating build/lib/rna_tools/tools/plotting/test_data 2026-02-14T09:51:37,971 copying rna_tools/tools/plotting/test_data/rmsds.csv -> build/lib/rna_tools/tools/plotting/test_data 2026-02-14T09:51:37,974 copying rna_tools/tools/plotting/test_data/rmsds_dens.png -> build/lib/rna_tools/tools/plotting/test_data 2026-02-14T09:51:37,978 copying rna_tools/tools/plotting/test_data/rmsds_hist.png -> build/lib/rna_tools/tools/plotting/test_data 2026-02-14T09:51:37,981 copying rna_tools/tools/md/.gitignore -> build/lib/rna_tools/tools/md 2026-02-14T09:51:37,983 copying rna_tools/tools/md/README.md -> build/lib/rna_tools/tools/md 2026-02-14T09:51:37,986 copying rna_tools/tools/md/out.txt -> build/lib/rna_tools/tools/md 2026-02-14T09:51:37,988 copying rna_tools/tools/md/test.sh -> build/lib/rna_tools/tools/md 2026-02-14T09:51:37,991 creating build/lib/rna_tools/tools/md/data 2026-02-14T09:51:37,992 copying rna_tools/tools/md/data/rnakb_all.txt -> build/lib/rna_tools/tools/md/data 2026-02-14T09:51:37,996 creating build/lib/rna_tools/tools/md/test_data 2026-02-14T09:51:37,998 copying rna_tools/tools/md/test_data/1duq -> build/lib/rna_tools/tools/md/test_data 2026-02-14T09:51:38,001 copying rna_tools/tools/md/test_data/1duq.pdb -> build/lib/rna_tools/tools/md/test_data 2026-02-14T09:51:38,005 copying rna_tools/tools/md/test_data/1duq_rpr.pdb -> build/lib/rna_tools/tools/md/test_data 2026-02-14T09:51:38,011 copying rna_tools/tools/md/test_data/1msy_output4_01-000001_AA.pdb -> build/lib/rna_tools/tools/md/test_data 2026-02-14T09:51:38,018 copying rna_tools/tools/md/test_data/3nt.pdb -> build/lib/rna_tools/tools/md/test_data 2026-02-14T09:51:38,022 copying rna_tools/tools/md/test_data/3nt_edited.pdb -> build/lib/rna_tools/tools/md/test_data 2026-02-14T09:51:38,025 copying rna_tools/tools/md/test_data/RA5_G.pdb -> build/lib/rna_tools/tools/md/test_data 2026-02-14T09:51:38,029 copying rna_tools/tools/md/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_error_fx.pdb -> build/lib/rna_tools/tools/md/test_data 2026-02-14T09:51:38,033 copying rna_tools/tools/md/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_error_fx_rmPO.pdb -> build/lib/rna_tools/tools/md/test_data 2026-02-14T09:51:38,037 copying rna_tools/tools/md/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_noC.pdb -> build/lib/rna_tools/tools/md/test_data 2026-02-14T09:51:38,041 copying rna_tools/tools/md/test_data/decoy0165_amb_clx.pdb -> build/lib/rna_tools/tools/md/test_data 2026-02-14T09:51:38,047 copying rna_tools/tools/md/test_data/groups.txt -> build/lib/rna_tools/tools/md/test_data 2026-02-14T09:51:38,050 copying rna_tools/tools/md/test_data/temp.pdb -> build/lib/rna_tools/tools/md/test_data 2026-02-14T09:51:38,053 creating build/lib/rna_tools/tools/md/test_output 2026-02-14T09:51:38,055 copying rna_tools/tools/md/test_output/1duq_rnakb_ready.pdb -> build/lib/rna_tools/tools/md/test_output 2026-02-14T09:51:38,060 copying rna_tools/tools/md/test_output/1duq_rpr_rnakb_ready.pdb -> build/lib/rna_tools/tools/md/test_output 2026-02-14T09:51:38,064 copying rna_tools/tools/md/test_output/1msy_output4_01-000001_AA_rnakb_ready.pdb -> build/lib/rna_tools/tools/md/test_output 2026-02-14T09:51:38,069 copying rna_tools/tools/md/test_output/3nt_edited_rnakb_ready.pdb -> build/lib/rna_tools/tools/md/test_output 2026-02-14T09:51:38,073 copying rna_tools/tools/md/test_output/RA5_G.pdb -> build/lib/rna_tools/tools/md/test_output 2026-02-14T09:51:38,076 copying rna_tools/tools/md/test_output/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_error_fx_rnakb_ready.pdb -> build/lib/rna_tools/tools/md/test_output 2026-02-14T09:51:38,080 copying rna_tools/tools/clarna_app/readme.md -> build/lib/rna_tools/tools/clarna_app 2026-02-14T09:51:38,083 copying rna_tools/tools/clarna_app/test.sh -> build/lib/rna_tools/tools/clarna_app 2026-02-14T09:51:38,086 creating build/lib/rna_tools/tools/clarna_app/data 2026-02-14T09:51:38,087 copying rna_tools/tools/clarna_app/data/cl.txt -> build/lib/rna_tools/tools/clarna_app/data 2026-02-14T09:51:38,093 copying rna_tools/tools/clarna_app/data/cl_full.csv -> build/lib/rna_tools/tools/clarna_app/data 2026-02-14T09:51:38,096 copying rna_tools/tools/clarna_app/data/cl_short.csv -> build/lib/rna_tools/tools/clarna_app/data 2026-02-14T09:51:38,099 copying rna_tools/tools/clarna_play/readme.md -> build/lib/rna_tools/tools/clarna_play 2026-02-14T09:51:38,102 copying rna_tools/tools/clarna_play/test.sh -> build/lib/rna_tools/tools/clarna_play 2026-02-14T09:51:38,104 creating build/lib/rna_tools/tools/clarna_play/docs 2026-02-14T09:51:38,105 copying rna_tools/tools/clarna_play/docs/clarna_run.png -> build/lib/rna_tools/tools/clarna_play/docs 2026-02-14T09:51:38,110 creating build/lib/rna_tools/tools/clarna_play/test_data 2026-02-14T09:51:38,111 copying rna_tools/tools/clarna_play/test_data/1a51_00_A.pdb -> build/lib/rna_tools/tools/clarna_play/test_data 2026-02-14T09:51:38,116 copying rna_tools/tools/clarna_play/test_data/1kxk_00_A.pdb -> build/lib/rna_tools/tools/clarna_play/test_data 2026-02-14T09:51:38,121 copying rna_tools/tools/clarna_play/test_data/1q9a_00_A.pdb -> build/lib/rna_tools/tools/clarna_play/test_data 2026-02-14T09:51:38,130 copying rna_tools/tools/clarna_play/test_data/2a43_00_A.pdb -> build/lib/rna_tools/tools/clarna_play/test_data 2026-02-14T09:51:38,133 copying rna_tools/tools/clarna_play/test_data/3e5fA_M15_c.pdb -> build/lib/rna_tools/tools/clarna_play/test_data 2026-02-14T09:51:38,138 copying rna_tools/tools/clarna_play/test_data/3e5fA_M500_c.pdb -> build/lib/rna_tools/tools/clarna_play/test_data 2026-02-14T09:51:38,143 copying rna_tools/tools/clarna_play/test_data/5k7c.pdb -> build/lib/rna_tools/tools/clarna_play/test_data 2026-02-14T09:51:38,151 copying rna_tools/tools/clarna_play/test_data/5k7c_clean_onechain_renumber_as_puzzle_srr_AB.pdb -> build/lib/rna_tools/tools/clarna_play/test_data 2026-02-14T09:51:38,155 copying rna_tools/tools/clarna_play/test_data/ss.fa -> build/lib/rna_tools/tools/clarna_play/test_data 2026-02-14T09:51:38,158 creating build/lib/rna_tools/tools/clarna_play/test_output 2026-02-14T09:51:38,159 copying rna_tools/tools/clarna_play/test_output/3e5fA_M15_c.pdb.outCR -> build/lib/rna_tools/tools/clarna_play/test_output 2026-02-14T09:51:38,161 copying rna_tools/tools/clarna_play/test_output/3e5fA_M500_c.pdb.outCR -> build/lib/rna_tools/tools/clarna_play/test_output 2026-02-14T09:51:38,163 creating build/lib/rna_tools/tools/clarna_play/tests 2026-02-14T09:51:38,164 copying rna_tools/tools/clarna_play/tests/1evv_00_A.pdb -> build/lib/rna_tools/tools/clarna_play/tests 2026-02-14T09:51:38,170 copying rna_tools/tools/clarna_play/tests/3e5fA_M15.pdb -> build/lib/rna_tools/tools/clarna_play/tests 2026-02-14T09:51:38,175 copying rna_tools/tools/clarna_play/tests/3e5fA_M500.pdb -> build/lib/rna_tools/tools/clarna_play/tests 2026-02-14T09:51:38,179 copying rna_tools/tools/clanstix/.gitignore -> build/lib/rna_tools/tools/clanstix 2026-02-14T09:51:38,181 copying rna_tools/tools/clanstix/LICENSE -> build/lib/rna_tools/tools/clanstix 2026-02-14T09:51:38,185 copying rna_tools/tools/clanstix/README.md -> build/lib/rna_tools/tools/clanstix 2026-02-14T09:51:38,187 copying rna_tools/tools/clanstix/colors.txt -> build/lib/rna_tools/tools/clanstix 2026-02-14T09:51:38,189 copying rna_tools/tools/clanstix/test.sh -> build/lib/rna_tools/tools/clanstix 2026-02-14T09:51:38,191 copying rna_tools/tools/clanstix/test2.sh -> build/lib/rna_tools/tools/clanstix 2026-02-14T09:51:38,194 copying rna_tools/tools/clanstix/test3.sh -> build/lib/rna_tools/tools/clanstix 2026-02-14T09:51:38,196 creating build/lib/rna_tools/tools/clanstix/doc 2026-02-14T09:51:38,197 copying rna_tools/tools/clanstix/doc/rna_clanstix.png -> build/lib/rna_tools/tools/clanstix/doc 2026-02-14T09:51:38,200 copying rna_tools/tools/clanstix/doc/rp18_clanstix.png -> build/lib/rna_tools/tools/clanstix/doc 2026-02-14T09:51:38,206 copying rna_tools/tools/clanstix/doc/yndSrLTb7l.gif -> build/lib/rna_tools/tools/clanstix/doc 2026-02-14T09:51:38,233 creating build/lib/rna_tools/tools/clanstix/test_data 2026-02-14T09:51:38,234 copying rna_tools/tools/clanstix/test_data/gmp.clans -> build/lib/rna_tools/tools/clanstix/test_data 2026-02-14T09:51:38,239 copying rna_tools/tools/clanstix/test_data/gmp_color_by_homolog.clans -> build/lib/rna_tools/tools/clanstix/test_data 2026-02-14T09:51:38,243 copying rna_tools/tools/clanstix/test_data/gmp_color_by_homolog_shape_by_source.clans -> build/lib/rna_tools/tools/clanstix/test_data 2026-02-14T09:51:38,251 copying rna_tools/tools/clanstix/test_data/gmp_ref_mapping_pk_refX.txt -> build/lib/rna_tools/tools/clanstix/test_data 2026-02-14T09:51:38,257 copying rna_tools/tools/clanstix/test_data/matrix.txt -> build/lib/rna_tools/tools/clanstix/test_data 2026-02-14T09:51:38,260 copying rna_tools/tools/clanstix/test_data/rp13_RNAevo_fragments_clans_raw.out -> build/lib/rna_tools/tools/clanstix/test_data 2026-02-14T09:51:38,287 copying rna_tools/tools/clanstix/test_data/rp18_rmsd.csv -> build/lib/rna_tools/tools/clanstix/test_data 2026-02-14T09:51:38,298 copying rna_tools/tools/clanstix/test_data/rp18_rmsd.in -> build/lib/rna_tools/tools/clanstix/test_data 2026-02-14T09:51:38,306 creating build/lib/rna_tools/tools/clanstix/test_data/rp17_del 2026-02-14T09:51:38,307 copying rna_tools/tools/clanstix/test_data/rp17_del/clans.input -> build/lib/rna_tools/tools/clanstix/test_data/rp17_del 2026-02-14T09:51:38,312 copying rna_tools/tools/clanstix/test_data/rp17_del/rp17_clans.png -> build/lib/rna_tools/tools/clanstix/test_data/rp17_del 2026-02-14T09:51:38,317 copying rna_tools/tools/clanstix/test_data/rp17_del/rp17_clans_process.png -> build/lib/rna_tools/tools/clanstix/test_data/rp17_del 2026-02-14T09:51:38,354 copying rna_tools/tools/clanstix/test_data/rp17_del/rp17_rmsd.csv -> build/lib/rna_tools/tools/clanstix/test_data/rp17_del 2026-02-14T09:51:38,357 copying rna_tools/tools/clanstix/test_data/rp17_del/run.sh -> build/lib/rna_tools/tools/clanstix/test_data/rp17_del 2026-02-14T09:51:38,360 copying rna_tools/tools/rna_prediction_significance/.gitignore -> build/lib/rna_tools/tools/rna_prediction_significance 2026-02-14T09:51:38,362 copying rna_tools/tools/rna_prediction_significance/LICENSE -> build/lib/rna_tools/tools/rna_prediction_significance 2026-02-14T09:51:38,365 copying rna_tools/tools/rna_prediction_significance/README.md -> build/lib/rna_tools/tools/rna_prediction_significance 2026-02-14T09:51:38,367 creating build/lib/rna_tools/tools/rna_prediction_significance/opt 2026-02-14T09:51:38,368 copying rna_tools/tools/rna_prediction_significance/opt/RNA_PredictionSignificance.cpp -> build/lib/rna_tools/tools/rna_prediction_significance/opt 2026-02-14T09:51:38,370 copying rna_tools/tools/extra_functions/numbering.txt -> build/lib/rna_tools/tools/extra_functions 2026-02-14T09:51:38,372 copying rna_tools/tools/mq/README.md -> build/lib/rna_tools/tools/mq 2026-02-14T09:51:38,374 copying rna_tools/tools/mq/rna_mq_remote.sh -> build/lib/rna_tools/tools/mq 2026-02-14T09:51:38,376 copying rna_tools/tools/mq/test.sh -> build/lib/rna_tools/tools/mq 2026-02-14T09:51:38,378 creating build/lib/rna_tools/tools/mq/test 2026-02-14T09:51:38,379 copying rna_tools/tools/mq/test/1a9n.pdb -> build/lib/rna_tools/tools/mq/test 2026-02-14T09:51:38,598 copying rna_tools/tools/mq/test/1msy_output4_01-000001_AA_edited.pdb -> build/lib/rna_tools/tools/mq/test 2026-02-14T09:51:38,603 copying rna_tools/tools/mq/test/1xjrA.pdb -> build/lib/rna_tools/tools/mq/test 2026-02-14T09:51:38,609 copying rna_tools/tools/mq/test/1xjrA_M1.pdb -> build/lib/rna_tools/tools/mq/test 2026-02-14T09:51:38,615 copying rna_tools/tools/mq/test/1xjrA_M500.pdb -> build/lib/rna_tools/tools/mq/test 2026-02-14T09:51:38,620 copying rna_tools/tools/mq/test/1xjrA_output4_04-000056_AA.pdb -> build/lib/rna_tools/tools/mq/test 2026-02-14T09:51:38,624 copying rna_tools/tools/mq/test/1y26X_output4_01-000001_AA.pdb -> build/lib/rna_tools/tools/mq/test 2026-02-14T09:51:38,629 copying rna_tools/tools/mq/test/1zhoH.pdb -> build/lib/rna_tools/tools/mq/test 2026-02-14T09:51:38,635 copying rna_tools/tools/mq/test/2pcw_1_2chains.pdb -> build/lib/rna_tools/tools/mq/test 2026-02-14T09:51:38,855 copying rna_tools/tools/mq/test/3e5f_output4_01-000001_AA+ResnShift.pdb -> build/lib/rna_tools/tools/mq/test 2026-02-14T09:51:38,862 copying rna_tools/tools/mq/test/6TNA.pdb -> build/lib/rna_tools/tools/mq/test 2026-02-14T09:51:38,872 copying rna_tools/tools/mq/test/all.csv -> build/lib/rna_tools/tools/mq/test 2026-02-14T09:51:38,876 copying rna_tools/tools/mq/test/dfire.csv -> build/lib/rna_tools/tools/mq/test 2026-02-14T09:51:38,879 copying rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr.pdb -> build/lib/rna_tools/tools/mq/test 2026-02-14T09:51:38,885 copying rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_2.pdb -> build/lib/rna_tools/tools/mq/test 2026-02-14T09:51:38,888 copying rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_6.pdb -> build/lib/rna_tools/tools/mq/test 2026-02-14T09:51:38,892 copying rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_SwapChains.pdb -> build/lib/rna_tools/tools/mq/test 2026-02-14T09:51:38,896 copying rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_SwapChainsAB.pdb -> build/lib/rna_tools/tools/mq/test 2026-02-14T09:51:38,901 copying rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_SwapChainsOneChain.pdb -> build/lib/rna_tools/tools/mq/test 2026-02-14T09:51:38,905 copying rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_x4chains.pdb -> build/lib/rna_tools/tools/mq/test 2026-02-14T09:51:38,909 copying rna_tools/tools/mq/test/ggg-t1_yCs_5MPS.pdb2-21g-6-61g+80g-rpr.pdb -> build/lib/rna_tools/tools/mq/test 2026-02-14T09:51:38,913 copying rna_tools/tools/mq/test/test.pdb -> build/lib/rna_tools/tools/mq/test 2026-02-14T09:51:38,917 copying rna_tools/tools/mq/test/test2.pdb -> build/lib/rna_tools/tools/mq/test 2026-02-14T09:51:38,922 creating build/lib/rna_tools/tools/mq/tmp 2026-02-14T09:51:38,923 creating build/lib/rna_tools/tools/mq/tmp/yC_5LJ3_U2U6_core_1st_triplex_6-61A_2-21U_refx 2026-02-14T09:51:38,924 copying rna_tools/tools/mq/tmp/yC_5LJ3_U2U6_core_1st_triplex_6-61A_2-21U_refx/configfile.txt -> build/lib/rna_tools/tools/mq/tmp/yC_5LJ3_U2U6_core_1st_triplex_6-61A_2-21U_refx 2026-02-14T09:51:38,927 copying rna_tools/tools/rna_sali2dotbracket/README.MD -> build/lib/rna_tools/tools/rna_sali2dotbracket 2026-02-14T09:51:38,930 creating build/lib/rna_tools/tools/rna_sali2dotbracket/test_data 2026-02-14T09:51:38,931 copying rna_tools/tools/rna_sali2dotbracket/test_data/IA1.sali -> build/lib/rna_tools/tools/rna_sali2dotbracket/test_data 2026-02-14T09:51:38,938 copying rna_tools/tools/rna_sali2dotbracket/test_data/IA1_dotbracket.txt -> build/lib/rna_tools/tools/rna_sali2dotbracket/test_data 2026-02-14T09:51:38,943 copying rna_tools/tools/rna_rosetta/.gitignore -> build/lib/rna_tools/tools/rna_rosetta 2026-02-14T09:51:38,946 copying rna_tools/tools/rna_rosetta/test.sh -> build/lib/rna_tools/tools/rna_rosetta 2026-02-14T09:51:38,948 creating build/lib/rna_tools/tools/rna_rosetta/test_data 2026-02-14T09:51:38,950 copying rna_tools/tools/rna_rosetta/test_data/S_000005_032.out -> build/lib/rna_tools/tools/rna_rosetta/test_data 2026-02-14T09:51:38,954 copying rna_tools/tools/rna_rosetta/test_data/S_000020_024.out -> build/lib/rna_tools/tools/rna_rosetta/test_data 2026-02-14T09:51:38,959 copying rna_tools/tools/rna_rosetta/test_data/S_000027_058.out -> build/lib/rna_tools/tools/rna_rosetta/test_data 2026-02-14T09:51:38,964 copying rna_tools/tools/rna_rosetta/test_data/S_000035_003.out -> build/lib/rna_tools/tools/rna_rosetta/test_data 2026-02-14T09:51:38,970 copying rna_tools/tools/rna_rosetta/test_data/a04.fa -> build/lib/rna_tools/tools/rna_rosetta/test_data 2026-02-14T09:51:38,973 copying rna_tools/tools/rna_rosetta/test_data/a99.fa -> build/lib/rna_tools/tools/rna_rosetta/test_data 2026-02-14T09:51:38,976 copying rna_tools/tools/rna_rosetta/test_data/ade.fa -> build/lib/rna_tools/tools/rna_rosetta/test_data 2026-02-14T09:51:38,980 copying rna_tools/tools/rna_rosetta/test_data/selected.out -> build/lib/rna_tools/tools/rna_rosetta/test_data 2026-02-14T09:51:38,989 copying rna_tools/tools/rna_rosetta/test_data/selected.out.rand2.out -> build/lib/rna_tools/tools/rna_rosetta/test_data 2026-02-14T09:51:38,995 copying rna_tools/tools/rna_rosetta/test_data/selected.out.rand5.out -> build/lib/rna_tools/tools/rna_rosetta/test_data 2026-02-14T09:51:39,004 copying rna_tools/tools/rna_rosetta/test_data/silent_sort.out -> build/lib/rna_tools/tools/rna_rosetta/test_data 2026-02-14T09:51:39,009 copying rna_tools/tools/rna_rosetta/test_data/tetraloop.fa -> build/lib/rna_tools/tools/rna_rosetta/test_data 2026-02-14T09:51:39,012 creating build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2026-02-14T09:51:39,013 copying rna_tools/tools/rna_rosetta/test_data/tl/CMDLINES -> build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2026-02-14T09:51:39,016 copying rna_tools/tools/rna_rosetta/test_data/tl/helix0.fasta -> build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2026-02-14T09:51:39,018 copying rna_tools/tools/rna_rosetta/test_data/tl/helix0.out -> build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2026-02-14T09:51:39,028 copying rna_tools/tools/rna_rosetta/test_data/tl/helix0.params -> build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2026-02-14T09:51:39,031 copying rna_tools/tools/rna_rosetta/test_data/tl/input.fa -> build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2026-02-14T09:51:39,034 copying rna_tools/tools/rna_rosetta/test_data/tl/qsubMINI -> build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2026-02-14T09:51:39,037 copying rna_tools/tools/rna_rosetta/test_data/tl/seq.fa -> build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2026-02-14T09:51:39,040 copying rna_tools/tools/rna_rosetta/test_data/tl/ss.fa -> build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2026-02-14T09:51:39,043 copying rna_tools/tools/rna_rosetta/test_data/tl/tl.fasta -> build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2026-02-14T09:51:39,046 copying rna_tools/tools/rna_rosetta/test_data/tl/tl.params -> build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2026-02-14T09:51:39,048 copying rna_tools/tools/PyMOL4RNA/README.md -> build/lib/rna_tools/tools/PyMOL4RNA 2026-02-14T09:51:39,051 copying rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL-2020.ipynb -> build/lib/rna_tools/tools/PyMOL4RNA 2026-02-14T09:51:39,055 copying rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL-2022.ipynb -> build/lib/rna_tools/tools/PyMOL4RNA 2026-02-14T09:51:39,059 copying rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL.csv -> build/lib/rna_tools/tools/PyMOL4RNA 2026-02-14T09:51:39,062 copying rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL.ipynb -> build/lib/rna_tools/tools/PyMOL4RNA 2026-02-14T09:51:39,067 copying rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL.xlsx -> build/lib/rna_tools/tools/PyMOL4RNA 2026-02-14T09:51:39,071 creating build/lib/rna_tools/tools/PyMOL4RNA/doc 2026-02-14T09:51:39,072 copying rna_tools/tools/PyMOL4RNA/doc/clarna.png -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2026-02-14T09:51:39,077 copying rna_tools/tools/PyMOL4RNA/doc/ion.png -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2026-02-14T09:51:39,082 copying rna_tools/tools/PyMOL4RNA/doc/p.png -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2026-02-14T09:51:39,089 copying rna_tools/tools/PyMOL4RNA/doc/pdb.png -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2026-02-14T09:51:39,095 copying rna_tools/tools/PyMOL4RNA/doc/pucker.jpg -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2026-02-14T09:51:39,102 copying rna_tools/tools/PyMOL4RNA/doc/pymol4spliceosome.png -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2026-02-14T09:51:39,124 copying rna_tools/tools/PyMOL4RNA/doc/rna.png -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2026-02-14T09:51:39,131 copying rna_tools/tools/PyMOL4RNA/doc/rs.png -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2026-02-14T09:51:39,136 copying rna_tools/tools/PyMOL4RNA/doc/run.png -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2026-02-14T09:51:39,156 copying rna_tools/tools/PyMOL4RNA/doc/spl.png -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2026-02-14T09:51:39,182 copying rna_tools/tools/PyMOL4RNA/doc/ss.png -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2026-02-14T09:51:39,196 creating build/lib/rna_tools/tools/PyMOL4RNA/test_data 2026-02-14T09:51:39,197 copying rna_tools/tools/PyMOL4RNA/test_data/5k7c_clean.pdb -> build/lib/rna_tools/tools/PyMOL4RNA/test_data 2026-02-14T09:51:39,206 copying rna_tools/tools/rna_helix_vis/README.md -> build/lib/rna_tools/tools/rna_helix_vis 2026-02-14T09:51:39,208 creating build/lib/rna_tools/tools/rna_helix_vis/doc 2026-02-14T09:51:39,209 copying rna_tools/tools/rna_helix_vis/doc/rna_helix_vis.png -> build/lib/rna_tools/tools/rna_helix_vis/doc 2026-02-14T09:51:39,214 creating build/lib/rna_tools/tools/rna_helix_vis/test_data 2026-02-14T09:51:39,215 copying rna_tools/tools/rna_helix_vis/test_data/rp14.ss -> build/lib/rna_tools/tools/rna_helix_vis/test_data 2026-02-14T09:51:39,217 copying rna_tools/tools/rna_helix_vis/test_data/rp14_farna_eloop.out.1.pdb -> build/lib/rna_tools/tools/rna_helix_vis/test_data 2026-02-14T09:51:39,222 copying rna_tools/tools/pdb_formatix/README.md -> build/lib/rna_tools/tools/pdb_formatix 2026-02-14T09:51:39,225 copying rna_tools/tools/pymol_drawing/README.md -> build/lib/rna_tools/tools/pymol_drawing 2026-02-14T09:51:39,227 creating build/lib/rna_tools/tools/pymol_drawing/docs 2026-02-14T09:51:39,228 copying rna_tools/tools/pymol_drawing/docs/draw_circle.png -> build/lib/rna_tools/tools/pymol_drawing/docs 2026-02-14T09:51:39,232 copying rna_tools/tools/pymol_drawing/docs/draw_dist.png -> build/lib/rna_tools/tools/pymol_drawing/docs 2026-02-14T09:51:39,236 copying rna_tools/tools/pymol_drawing/docs/draw_vector.png -> build/lib/rna_tools/tools/pymol_drawing/docs 2026-02-14T09:51:39,239 creating build/lib/rna_tools/tools/pymol_drawing/test_data 2026-02-14T09:51:39,240 copying rna_tools/tools/pymol_drawing/test_data/CG.pdb -> build/lib/rna_tools/tools/pymol_drawing/test_data 2026-02-14T09:51:39,242 copying rna_tools/tools/diffpdb/.gitignore -> build/lib/rna_tools/tools/diffpdb 2026-02-14T09:51:39,244 copying rna_tools/tools/diffpdb/README.md -> build/lib/rna_tools/tools/diffpdb 2026-02-14T09:51:39,246 copying rna_tools/tools/diffpdb/test.sh -> build/lib/rna_tools/tools/diffpdb 2026-02-14T09:51:39,248 creating build/lib/rna_tools/tools/diffpdb/doc 2026-02-14T09:51:39,249 copying rna_tools/tools/diffpdb/doc/atom-variants.png -> build/lib/rna_tools/tools/diffpdb/doc 2026-02-14T09:51:39,252 copying rna_tools/tools/diffpdb/doc/diffpdb_osx_diffmerge.png -> build/lib/rna_tools/tools/diffpdb/doc 2026-02-14T09:51:39,259 copying rna_tools/tools/diffpdb/doc/missing-atoms.png -> build/lib/rna_tools/tools/diffpdb/doc 2026-02-14T09:51:39,266 copying rna_tools/tools/diffpdb/doc/missing-op3.png -> build/lib/rna_tools/tools/diffpdb/doc 2026-02-14T09:51:39,272 copying rna_tools/tools/diffpdb/doc/screenshot.png -> build/lib/rna_tools/tools/diffpdb/doc 2026-02-14T09:51:39,277 copying rna_tools/tools/diffpdb/doc/screenshot2.png -> build/lib/rna_tools/tools/diffpdb/doc 2026-02-14T09:51:39,281 creating build/lib/rna_tools/tools/diffpdb/lib 2026-02-14T09:51:39,282 copying rna_tools/tools/diffpdb/lib/diff2html.py -> build/lib/rna_tools/tools/diffpdb/lib 2026-02-14T09:51:39,285 creating build/lib/rna_tools/tools/diffpdb/output 2026-02-14T09:51:39,286 copying rna_tools/tools/diffpdb/output/2_str1_vs_str2.html -> build/lib/rna_tools/tools/diffpdb/output 2026-02-14T09:51:39,289 creating build/lib/rna_tools/tools/diffpdb/test_data 2026-02-14T09:51:39,290 copying rna_tools/tools/diffpdb/test_data/5k7c_clean_onechain_renumber_as_puzzle_srr.pdb -> build/lib/rna_tools/tools/diffpdb/test_data 2026-02-14T09:51:39,295 copying rna_tools/tools/diffpdb/test_data/5k7c_clean_onechain_renumber_as_puzzle_srr.pdb.out -> build/lib/rna_tools/tools/diffpdb/test_data 2026-02-14T09:51:39,298 copying rna_tools/tools/diffpdb/test_data/5k7c_clean_onechain_renumber_as_puzzle_srr_min.pdb -> build/lib/rna_tools/tools/diffpdb/test_data 2026-02-14T09:51:39,303 copying rna_tools/tools/diffpdb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0.pdb -> build/lib/rna_tools/tools/diffpdb/test_data 2026-02-14T09:51:39,306 copying rna_tools/tools/diffpdb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0.pdb.out -> build/lib/rna_tools/tools/diffpdb/test_data 2026-02-14T09:51:39,309 copying rna_tools/tools/diffpdb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clx.pdb -> build/lib/rna_tools/tools/diffpdb/test_data 2026-02-14T09:51:39,312 copying rna_tools/tools/diffpdb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clx.pdb.out -> build/lib/rna_tools/tools/diffpdb/test_data 2026-02-14T09:51:39,315 copying rna_tools/tools/diffpdb/test_data/pistol_thrs0.50A_clust272-000001_AA.pdb -> build/lib/rna_tools/tools/diffpdb/test_data 2026-02-14T09:51:39,319 copying rna_tools/tools/diffpdb/test_data/pistol_thrs0.50A_clust272-000001_AA.pdb.out -> build/lib/rna_tools/tools/diffpdb/test_data 2026-02-14T09:51:39,321 copying rna_tools/tools/diffpdb/test_data/pistol_thrs0.50A_clust272-000001_AA_min.pdb -> build/lib/rna_tools/tools/diffpdb/test_data 2026-02-14T09:51:39,325 creating build/lib/rna_tools/tools/diffpdb/test_data/1 2026-02-14T09:51:39,327 copying rna_tools/tools/diffpdb/test_data/1/1kxkA.pdb -> build/lib/rna_tools/tools/diffpdb/test_data/1 2026-02-14T09:51:39,331 copying rna_tools/tools/diffpdb/test_data/1/1kxkA_M1.pdb -> build/lib/rna_tools/tools/diffpdb/test_data/1 2026-02-14T09:51:39,336 creating build/lib/rna_tools/tools/diffpdb/test_data/2 2026-02-14T09:51:39,337 copying rna_tools/tools/diffpdb/test_data/2/str1.pdb -> build/lib/rna_tools/tools/diffpdb/test_data/2 2026-02-14T09:51:39,339 copying rna_tools/tools/diffpdb/test_data/2/str2.pdb -> build/lib/rna_tools/tools/diffpdb/test_data/2 2026-02-14T09:51:39,341 creating build/lib/rna_tools/tools/diffpdb/test_data/3.ident 2026-02-14T09:51:39,342 copying rna_tools/tools/diffpdb/test_data/3.ident/str1.pdb -> build/lib/rna_tools/tools/diffpdb/test_data/3.ident 2026-02-14T09:51:39,345 copying rna_tools/tools/diffpdb/test_data/3.ident/str2.pdb -> build/lib/rna_tools/tools/diffpdb/test_data/3.ident 2026-02-14T09:51:39,347 creating build/lib/rna_tools/tools/diffpdb/test_data/4 2026-02-14T09:51:39,348 copying rna_tools/tools/diffpdb/test_data/4/1duq.pdb -> build/lib/rna_tools/tools/diffpdb/test_data/4 2026-02-14T09:51:39,351 copying rna_tools/tools/diffpdb/test_data/4/1duq_decoy0171_amb_clx.pdb -> build/lib/rna_tools/tools/diffpdb/test_data/4 2026-02-14T09:51:39,355 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/.gitignore -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2026-02-14T09:51:39,357 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/LICENSE -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2026-02-14T09:51:39,359 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/README.md -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2026-02-14T09:51:39,362 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/rmsds.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2026-02-14T09:51:39,363 creating build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2026-02-14T09:51:39,365 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/1ypa.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2026-02-14T09:51:39,368 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/3ci2.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2026-02-14T09:51:39,373 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/ethane.xyz -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2026-02-14T09:51:39,376 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/ethane_bond.xyz -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2026-02-14T09:51:39,379 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/ethane_mini.xyz -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2026-02-14T09:51:39,381 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/ethane_translate.xyz -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2026-02-14T09:51:39,384 copying rna_tools/tools/rna_alignment/utils/R2R.cpp -> build/lib/rna_tools/tools/rna_alignment/utils 2026-02-14T09:51:39,387 copying rna_tools/tools/rna_alignment/utils/R2R.cpp.readme.md -> build/lib/rna_tools/tools/rna_alignment/utils 2026-02-14T09:51:39,390 copying rna_tools/tools/rna_alignment/utils/test.sh -> build/lib/rna_tools/tools/rna_alignment/utils 2026-02-14T09:51:39,392 creating build/lib/rna_tools/tools/rna_alignment/utils/test_data 2026-02-14T09:51:39,393 copying rna_tools/tools/rna_alignment/utils/test_data/RF00026_demo.fa -> build/lib/rna_tools/tools/rna_alignment/utils/test_data 2026-02-14T09:51:39,396 copying rna_tools/tools/rna_alignment/utils/test_data/mustela.fa -> build/lib/rna_tools/tools/rna_alignment/utils/test_data 2026-02-14T09:51:39,398 copying rna_tools/tools/rna_alignment/utils/test_data/mustela_format.fa -> build/lib/rna_tools/tools/rna_alignment/utils/test_data 2026-02-14T09:51:39,401 copying rna_tools/tools/rna_alignment/utils/test_data/mutant_list.stk -> build/lib/rna_tools/tools/rna_alignment/utils/test_data 2026-02-14T09:51:39,403 copying rna_tools/tools/rna_alignment/utils/test_data/mutant_list.txt -> build/lib/rna_tools/tools/rna_alignment/utils/test_data 2026-02-14T09:51:39,405 copying rna_tools/tools/rna_alignment/utils/test_data/pustela.fa -> build/lib/rna_tools/tools/rna_alignment/utils/test_data 2026-02-14T09:51:39,408 copying rna_tools/tools/rna_alignment/utils/test_data/u5_rfam_u5only.stk -> build/lib/rna_tools/tools/rna_alignment/utils/test_data 2026-02-14T09:51:39,410 creating build/lib/rna_tools/tools/mini_moderna3/moderna/data 2026-02-14T09:51:39,411 copying rna_tools/tools/mini_moderna3/moderna/data/B_DNA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2026-02-14T09:51:39,415 copying rna_tools/tools/mini_moderna3/moderna/data/IsostericityMatrices.txt -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2026-02-14T09:51:39,419 copying rna_tools/tools/mini_moderna3/moderna/data/all_atom_names -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2026-02-14T09:51:39,422 copying rna_tools/tools/mini_moderna3/moderna/data/helix.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2026-02-14T09:51:39,426 copying rna_tools/tools/mini_moderna3/moderna/data/modification_names_table -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2026-02-14T09:51:39,429 copying rna_tools/tools/mini_moderna3/moderna/data/modification_topologies.txt -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2026-02-14T09:51:39,432 copying rna_tools/tools/mini_moderna3/moderna/data/modifications -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2026-02-14T09:51:39,435 copying rna_tools/tools/mini_moderna3/moderna/data/pair_fragment.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2026-02-14T09:51:39,437 copying rna_tools/tools/mini_moderna3/moderna/data/phosphate_group.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2026-02-14T09:51:39,439 copying rna_tools/tools/mini_moderna3/moderna/data/rnaDB05_list.txt -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2026-02-14T09:51:39,441 copying rna_tools/tools/mini_moderna3/moderna/data/rnaDB05_list_without_tRNA.txt -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2026-02-14T09:51:39,444 copying rna_tools/tools/mini_moderna3/moderna/data/single_strand.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2026-02-14T09:51:39,447 copying rna_tools/tools/mini_moderna3/moderna/data/suite_clusters.txt -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2026-02-14T09:51:39,449 creating build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,450 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/----_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,453 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/Rib_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,455 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/Rib_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,457 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,460 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,462 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,465 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,467 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,469 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,471 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bifa_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,474 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bifa_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,476 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,479 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,481 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_GA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,483 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_GC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,486 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,488 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,490 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,492 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,495 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,497 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,499 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,502 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,504 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,506 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_GA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,509 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,511 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,513 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_UC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,516 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,518 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,520 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSa_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,523 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSa_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,525 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSa_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,527 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSa_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,530 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSb_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,532 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,535 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,537 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,540 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,542 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,545 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,547 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,550 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,552 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_GA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,555 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_GC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,557 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,559 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,562 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,564 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,567 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,569 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,571 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,574 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,576 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,578 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,581 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSb_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,583 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,586 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,588 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,591 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,593 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,596 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_GA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,598 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,600 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,603 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,605 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,608 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWHa_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,610 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWHa_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,612 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWHa_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,615 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,617 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,620 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,622 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,624 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,627 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,629 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,632 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,634 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,637 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,639 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,642 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,644 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,647 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,649 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,652 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,654 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSa_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,656 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSa_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,659 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSa_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,661 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSb_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,663 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,666 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,668 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,670 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,672 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,675 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,677 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,679 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,681 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_GA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,684 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_GC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,686 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,688 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,691 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,693 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,695 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,697 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,700 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,702 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,704 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,707 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,709 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_GA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,712 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_GC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,715 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,717 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_UC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,719 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,722 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,725 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,727 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,729 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,732 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_GA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,734 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,737 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_UC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,739 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,741 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,744 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,746 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,749 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,751 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,753 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,755 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,758 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_GA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,760 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_GC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,763 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,765 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,768 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_UC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,770 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,772 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,775 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_GC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,777 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,779 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHb_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,781 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHb_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,784 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,786 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,789 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,791 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,793 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,795 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,798 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,800 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,802 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,805 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,808 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSa_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,810 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSa_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,812 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSa_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,815 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSb_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,817 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,820 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,822 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,825 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,827 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,830 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,832 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,834 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,836 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,839 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,841 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,844 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,846 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,848 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,850 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,852 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,855 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,857 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,859 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWHa_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,861 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWHa_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,864 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWHa_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,866 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,868 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,871 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,873 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,876 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,878 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,880 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,883 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,885 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_GC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,887 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,890 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,892 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,894 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,896 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,899 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWSa_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,901 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,903 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,905 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,907 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,909 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,912 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,914 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,917 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_GC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,920 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,922 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,925 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,928 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,931 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,933 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:39,936 creating build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:39,937 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:39,940 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:39,942 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:39,945 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:39,948 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:39,950 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:39,953 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:39,955 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:39,958 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:39,961 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:39,963 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:39,966 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:39,968 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:39,971 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:39,974 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:39,976 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:39,979 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:39,982 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:39,984 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:39,987 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:39,990 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:39,992 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:39,995 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:39,998 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:40,001 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:40,004 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:40,006 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:40,009 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:40,012 creating build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,012 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/1wts_N1C6C5_N6_mm.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,015 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,017 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p_O2p.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,018 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p_O2p_m.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,020 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p_O2p_r_P.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,023 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p_O2p_rp.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,025 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N1C6_D.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,028 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N1C6_m.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,030 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N1C6_m5D.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,032 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N3C4_acp.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,034 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N3C4_m.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,036 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_C7.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,038 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_Y.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,041 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_f.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,043 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_m.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,045 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_m1Y.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,048 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_m1acp3Y.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,050 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_m3Y.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,052 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mc.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,055 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mcm.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,057 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mcn.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,059 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mh.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,061 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mhc.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,063 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mhcm.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,065 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mn.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,068 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mnm.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,070 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mnmc.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,072 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mt.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,074 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_oh.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,076 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_om.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,079 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_omc.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,081 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_omcm.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,083 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_QtRNA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,086 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_galQtRNA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,088 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_gluQtRNA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,090 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_manQtRNA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,093 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_oQtRNA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,095 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_preQ0tRNA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,097 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_preQ1tRNA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,100 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C5C7C8_arch.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,102 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C5N7C8_m.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,104 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C6N7C8_m.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,106 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_i.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,108 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_mi.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,110 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_o2yW.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,112 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_ohyW.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,115 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_ohyW_star.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,117 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_yW.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,119 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_N2_m.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,122 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_N2_mm.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,124 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_k.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,126 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_m.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,128 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_s.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,130 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_se.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,133 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_sm.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,135 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_g.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,137 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_hn.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,140 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_i.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,142 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_io.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,144 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_m.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,147 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_m_t.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,149 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_mm.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,151 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_t.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,153 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_O.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,155 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_ac.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,157 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N3C4C5_N4_ac.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,159 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N3C4C5_N4_m.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,161 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N3C4C5_N4_mm.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,163 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N3C4C5_s.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,165 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/ribose_C.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:40,167 creating build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2026-02-14T09:51:40,168 copying rna_tools/tools/mini_moderna3/moderna/data/standard_bases/A.ent -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2026-02-14T09:51:40,170 copying rna_tools/tools/mini_moderna3/moderna/data/standard_bases/C.ent -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2026-02-14T09:51:40,172 copying rna_tools/tools/mini_moderna3/moderna/data/standard_bases/G.ent -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2026-02-14T09:51:40,174 copying rna_tools/tools/mini_moderna3/moderna/data/standard_bases/P_atom.ent -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2026-02-14T09:51:40,176 copying rna_tools/tools/mini_moderna3/moderna/data/standard_bases/U.ent -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2026-02-14T09:51:40,178 creating build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-02-14T09:51:40,179 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/SuiteCalculator.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-02-14T09:51:40,183 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/dihedral_bins.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-02-14T09:51:40,185 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/suite.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-02-14T09:51:40,188 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/suite2.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-02-14T09:51:40,190 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/suite_clusters.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-02-14T09:51:40,193 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/suitename.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-02-14T09:51:40,196 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_SuiteCalculator.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-02-14T09:51:40,199 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_suite.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-02-14T09:51:40,201 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_suitename.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-02-14T09:51:40,204 creating build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data 2026-02-14T09:51:40,205 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data/1JZC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data 2026-02-14T09:51:40,209 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data/1WTS.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data 2026-02-14T09:51:40,211 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data/ah0001Ha.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data 2026-02-14T09:51:40,214 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data/arhb90H.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data 2026-02-14T09:51:40,217 creating build/lib/rna_tools/tools/webserver-engine/django_extensions/css 2026-02-14T09:51:40,218 copying rna_tools/tools/webserver-engine/django_extensions/css/jquery.autocomplete.css -> build/lib/rna_tools/tools/webserver-engine/django_extensions/css 2026-02-14T09:51:40,220 creating build/lib/rna_tools/tools/webserver-engine/django_extensions/img 2026-02-14T09:51:40,221 copying rna_tools/tools/webserver-engine/django_extensions/img/indicator.gif -> build/lib/rna_tools/tools/webserver-engine/django_extensions/img 2026-02-14T09:51:40,223 creating build/lib/rna_tools/tools/webserver-engine/django_extensions/js 2026-02-14T09:51:40,224 copying rna_tools/tools/webserver-engine/django_extensions/js/jquery.ajaxQueue.js -> build/lib/rna_tools/tools/webserver-engine/django_extensions/js 2026-02-14T09:51:40,227 copying rna_tools/tools/webserver-engine/django_extensions/js/jquery.autocomplete.js -> build/lib/rna_tools/tools/webserver-engine/django_extensions/js 2026-02-14T09:51:40,230 copying rna_tools/tools/webserver-engine/django_extensions/js/jquery.bgiframe.min.js -> build/lib/rna_tools/tools/webserver-engine/django_extensions/js 2026-02-14T09:51:40,232 copying rna_tools/tools/webserver-engine/django_extensions/js/jquery.js -> build/lib/rna_tools/tools/webserver-engine/django_extensions/js 2026-02-14T09:51:40,236 creating build/lib/rna_tools/tools/webserver-engine/app/static 2026-02-14T09:51:40,237 creating build/lib/rna_tools/tools/webserver-engine/app/static/app 2026-02-14T09:51:40,238 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-acknowledgeinput.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app 2026-02-14T09:51:40,241 copying rna_tools/tools/webserver-engine/app/static/app/jsmol.zip -> build/lib/rna_tools/tools/webserver-engine/app/static/app 2026-02-14T09:51:40,304 copying rna_tools/tools/webserver-engine/app/static/app/rto.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app 2026-02-14T09:51:40,306 copying rna_tools/tools/webserver-engine/app/static/app/rto.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app 2026-02-14T09:51:40,308 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47 2026-02-14T09:51:40,309 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/README.md -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47 2026-02-14T09:51:40,312 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/extra.html -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47 2026-02-14T09:51:40,315 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/index.html -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47 2026-02-14T09:51:40,319 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/old_index.html -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47 2026-02-14T09:51:40,322 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets 2026-02-14T09:51:40,323 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css 2026-02-14T09:51:40,324 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/bootstrap.min.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css 2026-02-14T09:51:40,328 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/docs.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css 2026-02-14T09:51:40,331 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font-awesome-ie7.min.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css 2026-02-14T09:51:40,334 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font-awesome.min.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css 2026-02-14T09:51:40,337 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2026-02-14T09:51:40,338 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font/FontAwesome.otf -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2026-02-14T09:51:40,342 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font/fontawesome-webfont.eot -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2026-02-14T09:51:40,346 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font/fontawesome-webfont.svg -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2026-02-14T09:51:40,351 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font/fontawesome-webfont.ttf -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2026-02-14T09:51:40,355 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font/fontawesome-webfont.woff -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2026-02-14T09:51:40,358 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2026-02-14T09:51:40,359 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/apple-touch-icon-114-precomposed.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2026-02-14T09:51:40,362 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/apple-touch-icon-144-precomposed.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2026-02-14T09:51:40,365 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/apple-touch-icon-57-precomposed.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2026-02-14T09:51:40,368 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/apple-touch-icon-72-precomposed.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2026-02-14T09:51:40,371 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/favicon.ico -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2026-02-14T09:51:40,373 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/favicon.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2026-02-14T09:51:40,375 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/img 2026-02-14T09:51:40,376 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/img/bs-docs-masthead-pattern.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/img 2026-02-14T09:51:40,379 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2026-02-14T09:51:40,380 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/bootstrap.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2026-02-14T09:51:40,383 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/demo.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2026-02-14T09:51:40,386 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/docs.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2026-02-14T09:51:40,388 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/jquery-1.8.3.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2026-02-14T09:51:40,392 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/jquery-1.9.0.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2026-02-14T09:51:40,397 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/jquery-ui-1.10.0.custom.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2026-02-14T09:51:40,405 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/google-code-prettify 2026-02-14T09:51:40,406 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/google-code-prettify/prettify.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/google-code-prettify 2026-02-14T09:51:40,408 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/google-code-prettify/prettify.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/google-code-prettify 2026-02-14T09:51:40,411 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css 2026-02-14T09:51:40,412 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/demo.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css 2026-02-14T09:51:40,415 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme 2026-02-14T09:51:40,416 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/jquery-ui-1.10.0.custom.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme 2026-02-14T09:51:40,421 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/jquery-ui-1.9.2.custom.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme 2026-02-14T09:51:40,425 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/jquery.ui.1.10.0.ie.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme 2026-02-14T09:51:40,427 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/jquery.ui.1.9.2.ie.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme 2026-02-14T09:51:40,429 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-02-14T09:51:40,430 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_flat_0_aaaaaa_40x100.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-02-14T09:51:40,432 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_55_fbf9ee_1x400.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-02-14T09:51:40,435 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_65_ffffff_1x400.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-02-14T09:51:40,437 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_75_dadada_1x400.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-02-14T09:51:40,439 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_75_e6e6e6_1x400.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-02-14T09:51:40,441 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_75_ffffff_1x400.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-02-14T09:51:40,443 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_highlight-soft_75_cccccc_1x100.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-02-14T09:51:40,446 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_inset-soft_95_fef1ec_1x100.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-02-14T09:51:40,448 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_222222_256x240.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-02-14T09:51:40,450 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_2e83ff_256x240.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-02-14T09:51:40,453 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_454545_256x240.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-02-14T09:51:40,456 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_888888_256x240.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-02-14T09:51:40,458 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_cd0a0a_256x240.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-02-14T09:51:40,461 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_f6cf3b_256x240.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-02-14T09:51:40,463 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js 2026-02-14T09:51:40,464 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js/demo.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js 2026-02-14T09:51:40,467 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js/jquery-1.8.3.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js 2026-02-14T09:51:40,471 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js/jquery-ui-1.9.2.custom.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js 2026-02-14T09:51:40,477 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party 2026-02-14T09:51:40,478 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker 2026-02-14T09:51:40,479 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/index.html -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker 2026-02-14T09:51:40,481 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/css 2026-02-14T09:51:40,483 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/css/ui.daterangepicker.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/css 2026-02-14T09:51:40,485 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js 2026-02-14T09:51:40,487 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js/date.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js 2026-02-14T09:51:40,491 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js/daterangepicker.jQuery.compressed.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js 2026-02-14T09:51:40,495 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js/daterangepicker.jQuery.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js 2026-02-14T09:51:40,497 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput 2026-02-14T09:51:40,498 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/css 2026-02-14T09:51:40,499 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/css/enhanced.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/css 2026-02-14T09:51:40,501 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images 2026-02-14T09:51:40,502 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-generic.gif -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images 2026-02-14T09:51:40,505 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-image.gif -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images 2026-02-14T09:51:40,507 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-media.gif -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images 2026-02-14T09:51:40,510 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-zip.gif -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images 2026-02-14T09:51:40,512 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js 2026-02-14T09:51:40,513 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js/enhance.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js 2026-02-14T09:51:40,516 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js/fileinput.jquery.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js 2026-02-14T09:51:40,518 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo 2026-02-14T09:51:40,520 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo/jquery.bgiframe-2.1.3-pre.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo 2026-02-14T09:51:40,522 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo/jquery.mousewheel.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo 2026-02-14T09:51:40,525 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo/jquery.wijmo-open.1.5.0.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo 2026-02-14T09:51:40,528 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo/jquery.wijmo-open.1.5.0.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo 2026-02-14T09:51:40,536 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle 2026-02-14T09:51:40,537 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/LICENSE-MIT -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle 2026-02-14T09:51:40,539 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/README.md -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle 2026-02-14T09:51:40,541 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src 2026-02-14T09:51:40,542 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src/bootstrap-filestyle.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src 2026-02-14T09:51:40,545 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src/bootstrap-filestyle.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src 2026-02-14T09:51:40,547 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test 2026-02-14T09:51:40,548 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/index.html -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test 2026-02-14T09:51:40,551 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/upload.php -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test 2026-02-14T09:51:40,553 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/css 2026-02-14T09:51:40,554 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/css/bootstrap.min.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/css 2026-02-14T09:51:40,558 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img 2026-02-14T09:51:40,559 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img/glyphicons-halflings-white.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img 2026-02-14T09:51:40,562 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img/glyphicons-halflings.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img 2026-02-14T09:51:40,565 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js 2026-02-14T09:51:40,567 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js/aplication.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js 2026-02-14T09:51:40,569 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js/bootstrap.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js 2026-02-14T09:51:40,572 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/upload 2026-02-14T09:51:40,573 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/upload/.folder -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/upload 2026-02-14T09:51:40,575 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload 2026-02-14T09:51:40,576 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload/bootstrap-fileupload.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload 2026-02-14T09:51:40,579 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload/bootstrap-fileupload.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload 2026-02-14T09:51:40,582 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload/bootstrap-fileupload.min.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload 2026-02-14T09:51:40,584 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload/bootstrap-fileupload.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload 2026-02-14T09:51:40,586 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap 2026-02-14T09:51:40,587 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css 2026-02-14T09:51:40,588 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap-responsive.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css 2026-02-14T09:51:40,591 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap-responsive.min.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css 2026-02-14T09:51:40,594 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css 2026-02-14T09:51:40,599 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap.min.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css 2026-02-14T09:51:40,603 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/img 2026-02-14T09:51:40,604 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap/img/glyphicons-halflings-white.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/img 2026-02-14T09:51:40,607 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap/img/glyphicons-halflings.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/img 2026-02-14T09:51:40,611 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/js 2026-02-14T09:51:40,612 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap/js/bootstrap.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/js 2026-02-14T09:51:40,616 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap/js/bootstrap.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/js 2026-02-14T09:51:40,619 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap/js/jquery.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/js 2026-02-14T09:51:40,624 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:40,625 copying rna_tools/tools/webserver-engine/app/static/app/demo/1EHZ.cif -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:40,636 copying rna_tools/tools/webserver-engine/app/static/app/demo/1EHZ.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:40,644 copying rna_tools/tools/webserver-engine/app/static/app/demo/1l2x_restraints.txt -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:40,646 copying rna_tools/tools/webserver-engine/app/static/app/demo/1l2x_rna_clust0.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:40,649 copying rna_tools/tools/webserver-engine/app/static/app/demo/1xjr.cif -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:40,656 copying rna_tools/tools/webserver-engine/app/static/app/demo/1xjr.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:40,662 copying rna_tools/tools/webserver-engine/app/static/app/demo/21_3dRNA_1_rpr.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:40,668 copying rna_tools/tools/webserver-engine/app/static/app/demo/21_Adamiak_1_rpr.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:40,673 copying rna_tools/tools/webserver-engine/app/static/app/demo/21_ChenHighLig_1_rpr.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:40,678 copying rna_tools/tools/webserver-engine/app/static/app/demo/21_Das_1_rpr.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:40,685 copying rna_tools/tools/webserver-engine/app/static/app/demo/21_solution_2_rpr.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:40,690 copying rna_tools/tools/webserver-engine/app/static/app/demo/2gdi.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:40,697 copying rna_tools/tools/webserver-engine/app/static/app/demo/2gdi.txt -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:40,699 copying rna_tools/tools/webserver-engine/app/static/app/demo/2gdi_pred.txt -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:40,701 copying rna_tools/tools/webserver-engine/app/static/app/demo/2gdi_rnafold.txt -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:40,703 copying rna_tools/tools/webserver-engine/app/static/app/demo/2gdi_s.txt -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:40,705 copying rna_tools/tools/webserver-engine/app/static/app/demo/5k7c_clean_onechain_renumber_as_puzzle_srr.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:40,709 copying rna_tools/tools/webserver-engine/app/static/app/demo/5k7c_clean_onechain_renumber_as_puzzle_srr_min.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:40,711 copying rna_tools/tools/webserver-engine/app/static/app/demo/MissingAtomsAdded_rpr.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:40,714 copying rna_tools/tools/webserver-engine/app/static/app/demo/gtp.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:40,716 copying rna_tools/tools/webserver-engine/app/static/app/demo/missing_op1op2_r43OK.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:40,719 copying rna_tools/tools/webserver-engine/app/static/app/demo/pistol_thrs0.50A_clust272-000001_AA_min.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:40,722 copying rna_tools/tools/webserver-engine/app/static/app/demo/rp21.zip -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:40,727 copying rna_tools/tools/webserver-engine/app/static/app/demo/tRNA.txt -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:40,730 copying rna_tools/tools/webserver-engine/app/static/app/demo/tRNA_saxs.dat -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:40,733 copying rna_tools/tools/webserver-engine/app/static/app/demo/tetraloop.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:40,736 copying rna_tools/tools/webserver-engine/app/static/app/demo/tetraloop_helix.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:40,740 copying rna_tools/tools/webserver-engine/app/static/app/demo/tetraloop_mdr.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:40,743 copying rna_tools/tools/webserver-engine/app/static/app/demo/to-replace.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:40,746 copying rna_tools/tools/webserver-engine/app/static/app/demo/triple-ACA.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:40,749 copying rna_tools/tools/webserver-engine/app/static/app/demo/unmodified_tRNAPhe_restraints.txt -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:40,751 copying rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_CWC2_C.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:40,760 copying rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Cwc2_Exon_Intron.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:40,769 copying rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Exon_C.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:40,773 copying rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Exon_Intron.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:40,778 copying rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Exon_Intron_rpr.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:40,782 copying rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Intron_C.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:40,787 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/dropzone 2026-02-14T09:51:40,788 copying rna_tools/tools/webserver-engine/app/static/app/dropzone/dropzone.min.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/dropzone 2026-02-14T09:51:40,791 copying rna_tools/tools/webserver-engine/app/static/app/dropzone/dropzone.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/dropzone 2026-02-14T09:51:40,801 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/help 2026-02-14T09:51:40,803 copying rna_tools/tools/webserver-engine/app/static/app/help/1evv-ss-w11rst2_A.rest -> build/lib/rna_tools/tools/webserver-engine/app/static/app/help 2026-02-14T09:51:40,806 copying rna_tools/tools/webserver-engine/app/static/app/help/submit_seq_w_ss_restraints.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/help 2026-02-14T09:51:40,811 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2026-02-14T09:51:40,812 copying rna_tools/tools/webserver-engine/app/static/app/img/01.jpg -> build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2026-02-14T09:51:40,816 copying rna_tools/tools/webserver-engine/app/static/app/img/01.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2026-02-14T09:51:40,822 copying rna_tools/tools/webserver-engine/app/static/app/img/01b.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2026-02-14T09:51:40,826 copying rna_tools/tools/webserver-engine/app/static/app/img/01c.jpg -> build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2026-02-14T09:51:40,829 copying rna_tools/tools/webserver-engine/app/static/app/img/02.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2026-02-14T09:51:40,834 copying rna_tools/tools/webserver-engine/app/static/app/img/02x.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2026-02-14T09:51:40,841 copying rna_tools/tools/webserver-engine/app/static/app/img/03.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2026-02-14T09:51:40,848 copying rna_tools/tools/webserver-engine/app/static/app/img/diffpdb.jpg -> build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2026-02-14T09:51:40,854 copying rna_tools/tools/webserver-engine/app/static/app/img/folder.gif -> build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2026-02-14T09:51:40,857 copying rna_tools/tools/webserver-engine/app/static/app/img/qrnas.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2026-02-14T09:51:40,861 creating build/lib/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:40,862 copying rna_tools/tools/webserver-engine/app/templates/about.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:40,864 copying rna_tools/tools/webserver-engine/app/templates/analysis.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:40,867 copying rna_tools/tools/webserver-engine/app/templates/assess.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:40,869 copying rna_tools/tools/webserver-engine/app/templates/base.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:40,872 copying rna_tools/tools/webserver-engine/app/templates/calc-inf.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:40,875 copying rna_tools/tools/webserver-engine/app/templates/calc-rmsd.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:40,877 copying rna_tools/tools/webserver-engine/app/templates/cat.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:40,880 copying rna_tools/tools/webserver-engine/app/templates/clarna.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:40,882 copying rna_tools/tools/webserver-engine/app/templates/contact.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:40,884 copying rna_tools/tools/webserver-engine/app/templates/delete.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:40,887 copying rna_tools/tools/webserver-engine/app/templates/diffpdb.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:40,889 copying rna_tools/tools/webserver-engine/app/templates/dont_exits.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:40,891 copying rna_tools/tools/webserver-engine/app/templates/edit.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:40,894 copying rna_tools/tools/webserver-engine/app/templates/errors.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:40,896 copying rna_tools/tools/webserver-engine/app/templates/extract.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:40,899 copying rna_tools/tools/webserver-engine/app/templates/h2a.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:40,901 copying rna_tools/tools/webserver-engine/app/templates/help.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:40,906 copying rna_tools/tools/webserver-engine/app/templates/home.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:40,908 copying rna_tools/tools/webserver-engine/app/templates/mdr.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:40,911 copying rna_tools/tools/webserver-engine/app/templates/min.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:40,913 copying rna_tools/tools/webserver-engine/app/templates/mutate.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:40,916 copying rna_tools/tools/webserver-engine/app/templates/notebase.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:40,919 copying rna_tools/tools/webserver-engine/app/templates/notes.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:40,921 copying rna_tools/tools/webserver-engine/app/templates/qrnas.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:40,923 copying rna_tools/tools/webserver-engine/app/templates/rpl.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:40,926 copying rna_tools/tools/webserver-engine/app/templates/rpr.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:40,928 copying rna_tools/tools/webserver-engine/app/templates/seq.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:40,931 copying rna_tools/tools/webserver-engine/app/templates/ss.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:40,933 copying rna_tools/tools/webserver-engine/app/templates/swap.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:40,935 copying rna_tools/tools/webserver-engine/app/templates/tocif.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:40,937 copying rna_tools/tools/webserver-engine/app/templates/tools.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:40,940 copying rna_tools/tools/webserver-engine/app/templates/topdb.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:40,942 creating build/lib/rna_tools/tools/webserver-engine/app/templates/archive 2026-02-14T09:51:40,943 copying rna_tools/tools/webserver-engine/app/templates/archive/progress.html -> build/lib/rna_tools/tools/webserver-engine/app/templates/archive 2026-02-14T09:51:40,946 copying rna_tools/tools/webserver-engine/app/templates/archive/result.html -> build/lib/rna_tools/tools/webserver-engine/app/templates/archive 2026-02-14T09:51:40,949 copying rna_tools/tools/webserver-engine/app/templates/archive/secondary-structure.html -> build/lib/rna_tools/tools/webserver-engine/app/templates/archive 2026-02-14T09:51:40,951 copying rna_tools/tools/webserver-engine/app/templates/archive/sequence-search.html -> build/lib/rna_tools/tools/webserver-engine/app/templates/archive 2026-02-14T09:51:40,954 copying rna_tools/tools/webserver-engine/app/templates/archive/submit.html -> build/lib/rna_tools/tools/webserver-engine/app/templates/archive 2026-02-14T09:51:40,957 copying rna_tools/tools/clarna_play/ClaRNAlib/.gitignore -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2026-02-14T09:51:40,959 copying rna_tools/tools/clarna_play/ClaRNAlib/README.md -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2026-02-14T09:51:40,961 copying rna_tools/tools/clarna_play/ClaRNAlib/descriptions-dict.json -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2026-02-14T09:51:40,965 creating build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-02-14T09:51:40,966 copying rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.base-phosphate.json.gz -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-02-14T09:51:41,003 copying rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.base-ribose.json.gz -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-02-14T09:51:41,038 copying rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.bp.json.gz -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-02-14T09:51:41,155 copying rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.other.json.gz -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-02-14T09:51:41,164 copying rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.other2.json.gz -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-02-14T09:51:41,167 copying rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.other3.json.gz -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-02-14T09:51:41,169 copying rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.stacking.json.gz -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-02-14T09:51:41,261 creating build/lib/rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS 2026-02-14T09:51:41,262 copying rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS/ClaRNAwd_output_parser.cpp -> build/lib/rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS 2026-02-14T09:51:41,265 copying rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS/ClaRNAwd_output_parser.h -> build/lib/rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS 2026-02-14T09:51:41,267 copying rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS/Makefile -> build/lib/rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS 2026-02-14T09:51:41,270 copying rna_tools/tools/mq/RASP/test.sh -> build/lib/rna_tools/tools/mq/RASP 2026-02-14T09:51:41,272 copying rna_tools/tools/mq/FARNA/test.sh -> build/lib/rna_tools/tools/mq/FARNA 2026-02-14T09:51:41,274 creating build/lib/rna_tools/tools/mq/FARNA/test_output 2026-02-14T09:51:41,275 copying rna_tools/tools/mq/FARNA/test_output/1xjrA_rna_mq_collect_FARNA_hires.csv -> build/lib/rna_tools/tools/mq/FARNA/test_output 2026-02-14T09:51:41,278 copying rna_tools/tools/mq/FARNA/test_output/1y26X_output4_01-000001_AA.pdb_rna_mq_collect_FARNA_lores.csv -> build/lib/rna_tools/tools/mq/FARNA/test_output 2026-02-14T09:51:41,280 copying rna_tools/tools/mq/FARNA/test_output/1y26X_output4_01-000001_AA.pdb_rna_mq_farna_lores.csv -> build/lib/rna_tools/tools/mq/FARNA/test_output 2026-02-14T09:51:41,282 copying rna_tools/tools/mq/FARFAR2/test.sh -> build/lib/rna_tools/tools/mq/FARFAR2 2026-02-14T09:51:41,284 creating build/lib/rna_tools/tools/mq/FARFAR2/test_output 2026-02-14T09:51:41,285 copying rna_tools/tools/mq/FARFAR2/test_output/.python-version -> build/lib/rna_tools/tools/mq/FARFAR2/test_output 2026-02-14T09:51:41,287 copying rna_tools/tools/mq/FARFAR2/test_output/ff2.csv -> build/lib/rna_tools/tools/mq/FARFAR2/test_output 2026-02-14T09:51:41,289 copying rna_tools/tools/mq/FARFAR2/test_output/ff2_hires.csv -> build/lib/rna_tools/tools/mq/FARFAR2/test_output 2026-02-14T09:51:41,291 copying rna_tools/tools/mq/FARFAR2/test_output/ff2_hires_rna_mq_collect.csv -> build/lib/rna_tools/tools/mq/FARFAR2/test_output 2026-02-14T09:51:41,293 copying rna_tools/tools/mq/FARFAR2/test_output/ff2_rna_mq_collect.csv -> build/lib/rna_tools/tools/mq/FARFAR2/test_output 2026-02-14T09:51:41,295 copying rna_tools/tools/mq/rsRNASP/test.sh -> build/lib/rna_tools/tools/mq/rsRNASP 2026-02-14T09:51:41,297 copying rna_tools/tools/mq/RNAkb/test.sh -> build/lib/rna_tools/tools/mq/RNAkb 2026-02-14T09:51:41,299 creating build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-02-14T09:51:41,300 copying rna_tools/tools/mq/RNAkb/test_data/1dqf.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-02-14T09:51:41,304 copying rna_tools/tools/mq/RNAkb/test_data/1dqf_noCA+ResnShift.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-02-14T09:51:41,307 copying rna_tools/tools/mq/RNAkb/test_data/1dqf_noCA.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-02-14T09:51:41,310 copying rna_tools/tools/mq/RNAkb/test_data/1duq.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-02-14T09:51:41,314 copying rna_tools/tools/mq/RNAkb/test_data/1msy_nt1.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-02-14T09:51:41,316 copying rna_tools/tools/mq/RNAkb/test_data/1msy_output4_01-000001_AA.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-02-14T09:51:41,320 copying rna_tools/tools/mq/RNAkb/test_data/1ykq.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-02-14T09:51:41,324 copying rna_tools/tools/mq/RNAkb/test_data/1z58.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-02-14T09:51:41,538 copying rna_tools/tools/mq/RNAkb/test_data/333d.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-02-14T09:51:41,541 copying rna_tools/tools/mq/RNAkb/test_data/434d.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-02-14T09:51:41,544 copying rna_tools/tools/mq/RNAkb/test_data/C.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-02-14T09:51:41,547 copying rna_tools/tools/mq/RNAkb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-02-14T09:51:41,550 copying rna_tools/tools/mq/RNAkb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_error.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-02-14T09:51:41,553 copying rna_tools/tools/mq/RNAkb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_error_fx.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-02-14T09:51:41,556 copying rna_tools/tools/mq/RNAkb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_noC.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-02-14T09:51:41,559 copying rna_tools/tools/mq/RNAkb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clx.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-02-14T09:51:41,562 copying rna_tools/tools/mq/eSCORE/test.sh -> build/lib/rna_tools/tools/mq/eSCORE 2026-02-14T09:51:41,564 creating build/lib/rna_tools/tools/mq/eSCORE/test 2026-02-14T09:51:41,565 copying rna_tools/tools/mq/eSCORE/test/escore.txt -> build/lib/rna_tools/tools/mq/eSCORE/test 2026-02-14T09:51:41,567 copying rna_tools/tools/mq/ClashScore/test.sh -> build/lib/rna_tools/tools/mq/ClashScore 2026-02-14T09:51:41,569 copying rna_tools/tools/mq/QRNAS/test.sh -> build/lib/rna_tools/tools/mq/QRNAS 2026-02-14T09:51:41,571 copying rna_tools/tools/mq/Dfire/test.output -> build/lib/rna_tools/tools/mq/Dfire 2026-02-14T09:51:41,573 copying rna_tools/tools/mq/Dfire/test.sh -> build/lib/rna_tools/tools/mq/Dfire 2026-02-14T09:51:41,575 copying rna_tools/tools/mq/AnalyzeGeometry/test.sh -> build/lib/rna_tools/tools/mq/AnalyzeGeometry 2026-02-14T09:51:41,577 copying rna_tools/tools/mq/SimRNA/test.sh -> build/lib/rna_tools/tools/mq/SimRNA 2026-02-14T09:51:41,579 creating build/lib/rna_tools/tools/mq/SimRNA/test 2026-02-14T09:51:41,580 copying rna_tools/tools/mq/SimRNA/test/1duq_clx_decoy4_clx.pdb -> build/lib/rna_tools/tools/mq/SimRNA/test 2026-02-14T09:51:41,583 copying rna_tools/tools/mq/SimRNA/test/output.csv -> build/lib/rna_tools/tools/mq/SimRNA/test 2026-02-14T09:51:41,586 copying rna_tools/tools/mq/SimRNA/test/test.py -> build/lib/rna_tools/tools/mq/SimRNA/test 2026-02-14T09:51:41,588 copying rna_tools/tools/mq/RNA3DCNN/test.output -> build/lib/rna_tools/tools/mq/RNA3DCNN 2026-02-14T09:51:41,590 copying rna_tools/tools/mq/RNA3DCNN/test.sh -> build/lib/rna_tools/tools/mq/RNA3DCNN 2026-02-14T09:51:41,592 copying rna_tools/tools/mq/RASP/test/17_Bujnicki_7_rpr.pdb -> build/lib/rna_tools/tools/mq/RASP/test 2026-02-14T09:51:41,597 copying rna_tools/tools/mq/RASP/test/17_Das_1_rpr.pdb -> build/lib/rna_tools/tools/mq/RASP/test 2026-02-14T09:51:41,601 copying rna_tools/tools/mq/RASP/test/17_Das_4_rpr.pdb -> build/lib/rna_tools/tools/mq/RASP/test 2026-02-14T09:51:41,606 copying rna_tools/tools/mq/RASP/test/mq.csv -> build/lib/rna_tools/tools/mq/RASP/test 2026-02-14T09:51:41,608 copying rna_tools/tools/mq/RASP/test/test.csv -> build/lib/rna_tools/tools/mq/RASP/test 2026-02-14T09:51:41,610 copying rna_tools/tools/mq/RASP/test/test_sorted_rasp_all.csv -> build/lib/rna_tools/tools/mq/RASP/test 2026-02-14T09:51:41,612 copying rna_tools/tools/mq/QRNAS/test/1a9n.pdb -> build/lib/rna_tools/tools/mq/QRNAS/test 2026-02-14T09:51:41,616 copying rna_tools/tools/mq/QRNAS/test/test.output -> build/lib/rna_tools/tools/mq/QRNAS/test 2026-02-14T09:51:41,618 copying rna_tools/tools/mq/QRNAS/test/unmod_Val3_tRNA_model_si.pdb -> build/lib/rna_tools/tools/mq/QRNAS/test 2026-02-14T09:51:41,624 copying rna_tools/tools/mq/lib/wrappers/README.md -> build/lib/rna_tools/tools/mq/lib/wrappers 2026-02-14T09:51:41,626 copying rna_tools/tools/mq/lib/timex/.gitignore -> build/lib/rna_tools/tools/mq/lib/timex 2026-02-14T09:51:41,629 copying rna_tools/tools/mq/lib/timex/LICENSE -> build/lib/rna_tools/tools/mq/lib/timex 2026-02-14T09:51:41,632 copying rna_tools/tools/mq/lib/timex/README.md -> build/lib/rna_tools/tools/mq/lib/timex 2026-02-14T09:51:41,634 copying rna_tools/tools/mq/lib/shellgraphics/LICENSE -> build/lib/rna_tools/tools/mq/lib/shellgraphics 2026-02-14T09:51:41,637 copying rna_tools/tools/mq/lib/shellgraphics/README.md -> build/lib/rna_tools/tools/mq/lib/shellgraphics 2026-02-14T09:51:41,639 copying rna_tools/tools/mq/lib/shellgraphics/output.txt -> build/lib/rna_tools/tools/mq/lib/shellgraphics 2026-02-14T09:51:41,641 copying rna_tools/tools/pdb_formatix/test/1kxkA_rasp.native.pdb -> build/lib/rna_tools/tools/pdb_formatix/test 2026-02-14T09:51:41,645 copying rna_tools/tools/pdb_formatix/test/1xjrA_M1+ter.pdb -> build/lib/rna_tools/tools/pdb_formatix/test 2026-02-14T09:51:41,649 copying rna_tools/tools/pdb_formatix/test/1xjrA_M1.pdb -> build/lib/rna_tools/tools/pdb_formatix/test 2026-02-14T09:51:41,653 copying rna_tools/tools/pdb_formatix/test/protein.pdb -> build/lib/rna_tools/tools/pdb_formatix/test 2026-02-14T09:51:41,657 copying rna_tools/tools/pdb_formatix/test/sample_for_distance.pdb -> build/lib/rna_tools/tools/pdb_formatix/test 2026-02-14T09:51:41,659 copying rna_tools/tools/pdb_formatix/test/test0.in -> build/lib/rna_tools/tools/pdb_formatix/test 2026-02-14T09:51:41,662 copying rna_tools/tools/pdb_formatix/test/test0.out -> build/lib/rna_tools/tools/pdb_formatix/test 2026-02-14T09:51:41,666 copying rna_tools/tools/pdb_formatix/test/test0_3to1.out -> build/lib/rna_tools/tools/pdb_formatix/test 2026-02-14T09:51:41,669 copying rna_tools/tools/pdb_formatix/test/test1.in -> build/lib/rna_tools/tools/pdb_formatix/test 2026-02-14T09:51:41,672 copying rna_tools/tools/pdb_formatix/test/test1.out -> build/lib/rna_tools/tools/pdb_formatix/test 2026-02-14T09:51:41,674 copying rna_tools/tools/pdb_formatix/test/test_nmr.in -> build/lib/rna_tools/tools/pdb_formatix/test 2026-02-14T09:51:41,690 copying rna_tools/tools/pdb_formatix/test/test_nmr.out -> build/lib/rna_tools/tools/pdb_formatix/test 2026-02-14T09:51:41,694 copying rna_tools/tools/pdb_formatix/test/test_nmr_atom.out -> build/lib/rna_tools/tools/pdb_formatix/test 2026-02-14T09:51:41,762 UPDATING build/lib/rna_tools/_version.py 2026-02-14T09:51:41,762 set build/lib/rna_tools/_version.py to '3.27.1' 2026-02-14T09:51:41,763 running build_scripts 2026-02-14T09:51:41,764 creating build/scripts-3.11 2026-02-14T09:51:41,765 copying and adjusting rna_tools/rna_pdb_tools.py -> build/scripts-3.11 2026-02-14T09:51:41,770 copying and adjusting rna_tools/rna_calc_fenergy.py -> build/scripts-3.11 2026-02-14T09:51:41,772 copying and adjusting rna_tools/rna_pdb_replace.py -> build/scripts-3.11 2026-02-14T09:51:41,774 copying and adjusting rna_tools/rna_standardize.py -> build/scripts-3.11 2026-02-14T09:51:41,776 copying and adjusting rna_tools/rna_pdb_inspect.py -> build/scripts-3.11 2026-02-14T09:51:41,778 copying and adjusting rna_tools/rna_cif2pdb.py -> build/scripts-3.11 2026-02-14T09:51:41,781 copying and adjusting rna_tools/rna_pdb_fetch.py -> build/scripts-3.11 2026-02-14T09:51:41,783 copying and adjusting rna_tools/rna_pdb_fetch_header.py -> build/scripts-3.11 2026-02-14T09:51:41,785 copying and adjusting rna_tools/tools/misc/rna_tools_which.py -> build/scripts-3.11 2026-02-14T09:51:41,787 copying and adjusting rna_tools/tools/misc/rna_tools_demo.py -> build/scripts-3.11 2026-02-14T09:51:41,788 copying and adjusting rna_tools/tools/workflow/rna_workflow.py -> build/scripts-3.11 2026-02-14T09:51:41,790 copying and adjusting rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd.py -> build/scripts-3.11 2026-02-14T09:51:41,793 copying and adjusting rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_all_vs_all.py -> build/scripts-3.11 2026-02-14T09:51:41,795 copying and adjusting rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_biopython.py -> build/scripts-3.11 2026-02-14T09:51:41,798 copying and adjusting rna_tools/tools/rna_calc_rmsd/rna_plot_alignment_bounds.py -> build/scripts-3.11 2026-02-14T09:51:41,801 copying and adjusting rna_tools/rna_torsions.py -> build/scripts-3.11 2026-02-14T09:51:41,803 copying and adjusting rna_tools/tools/diffpdb/diffpdb.py -> build/scripts-3.11 2026-02-14T09:51:41,805 copying and adjusting rna_tools/tools/clanstix/rna_clanstix.py -> build/scripts-3.11 2026-02-14T09:51:41,808 copying and adjusting rna_tools/rna_dot2ct.py -> build/scripts-3.11 2026-02-14T09:51:41,809 copying and adjusting rna_tools/rna_secondary_structure_prediction.py -> build/scripts-3.11 2026-02-14T09:51:41,811 copying and adjusting rna_tools/tools/rna_prediction_significance/rna_prediction_significance.py -> build/scripts-3.11 2026-02-14T09:51:41,813 copying and adjusting rna_tools/tools/rna_multimodels/rna_pdb_merge_into_one.py -> build/scripts-3.11 2026-02-14T09:51:41,814 copying and adjusting rna_tools/tools/rna_calc_inf/rna_calc_inf.py -> build/scripts-3.11 2026-02-14T09:51:41,816 copying and adjusting rna_tools/tools/rna_convert_pseudoknot_formats/rna_pk_simrna_to_one_line.py -> build/scripts-3.11 2026-02-14T09:51:41,818 copying and adjusting rna_tools/tools/clarna_app/rna_clarna_app.py -> build/scripts-3.11 2026-02-14T09:51:41,820 copying and adjusting rna_tools/tools/rna_helix_vis/rna_helix_vis.py -> build/scripts-3.11 2026-02-14T09:51:41,821 copying and adjusting rna_tools/tools/misc/rna_add_chain.py -> build/scripts-3.11 2026-02-14T09:51:41,823 copying and adjusting rna_tools/tools/misc/rna_dict2fasta.py -> build/scripts-3.11 2026-02-14T09:51:41,824 copying and adjusting rna_tools/tools/rna_sali2dotbracket/rna_sali2dotbracket.py -> build/scripts-3.11 2026-02-14T09:51:41,826 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_run.py -> build/scripts-3.11 2026-02-14T09:51:41,828 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_cluster.py -> build/scripts-3.11 2026-02-14T09:51:41,830 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_min.py -> build/scripts-3.11 2026-02-14T09:51:41,832 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_n.py -> build/scripts-3.11 2026-02-14T09:51:41,834 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_silent_file_sort_and_select.py -> build/scripts-3.11 2026-02-14T09:51:41,835 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_extract_lowscore_decoys.py -> build/scripts-3.11 2026-02-14T09:51:41,837 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_check_progress.py -> build/scripts-3.11 2026-02-14T09:51:41,839 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_head.py -> build/scripts-3.11 2026-02-14T09:51:41,841 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_extract.py -> build/scripts-3.11 2026-02-14T09:51:41,842 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_get_score.py -> build/scripts-3.11 2026-02-14T09:51:41,844 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_silent_file_sort_and_select.py -> build/scripts-3.11 2026-02-14T09:51:41,845 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_silent_random.py -> build/scripts-3.11 2026-02-14T09:51:41,847 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_silent_split.py -> build/scripts-3.11 2026-02-14T09:51:41,849 copying and adjusting rna_tools/tools/simrna_trajectory/rna_simrna_lowest.py -> build/scripts-3.11 2026-02-14T09:51:41,850 copying and adjusting rna_tools/tools/simrna_trajectory/rna_simrna_extract.py -> build/scripts-3.11 2026-02-14T09:51:41,852 copying and adjusting rna_tools/tools/simrna_trajectory/rna_simrna_cluster.py -> build/scripts-3.11 2026-02-14T09:51:41,853 copying and adjusting rna_tools/tools/plotting/rna_plot_hist.py -> build/scripts-3.11 2026-02-14T09:51:41,855 copying and adjusting rna_tools/tools/plotting/rna_plot_density.py -> build/scripts-3.11 2026-02-14T09:51:41,857 copying and adjusting rna_tools/tools/plotting/rna_plot_heatmap.py -> build/scripts-3.11 2026-02-14T09:51:41,858 copying and adjusting rna_tools/tools/plotting/rna_plot_dendogram.py -> build/scripts-3.11 2026-02-14T09:51:41,860 copying and adjusting rna_tools/tools/plotting/rna_plot_boxplotlike.py -> build/scripts-3.11 2026-02-14T09:51:41,861 copying and adjusting rna_tools/tools/simrna_trajectory/rna_simrna_lowest.py -> build/scripts-3.11 2026-02-14T09:51:41,863 copying and adjusting rna_tools/tools/simrna_trajectory/rna_simrna_extract.py -> build/scripts-3.11 2026-02-14T09:51:41,865 copying and adjusting rna_tools/tools/simrna_trajectory/rna_simrna_cluster.py -> build/scripts-3.11 2026-02-14T09:51:41,866 copying and adjusting rna_tools/tools/rna_filter/rna_filter.py -> build/scripts-3.11 2026-02-14T09:51:41,868 copying and adjusting rna_tools/tools/rna_filter/rna_ec2x.py -> build/scripts-3.11 2026-02-14T09:51:41,870 copying and adjusting rna_tools/tools/rna_filter/rna_pairs2SimRNArestrs.py -> build/scripts-3.11 2026-02-14T09:51:41,872 copying and adjusting rna_tools/tools/rna_filter/rna_ss_get_bps.py -> build/scripts-3.11 2026-02-14T09:51:41,873 copying and adjusting rna_tools/tools/rna_filter/rna_pairs_diff.py -> build/scripts-3.11 2026-02-14T09:51:41,875 copying and adjusting rna_tools/tools/rna_rfam/rna_download_rfam.py -> build/scripts-3.11 2026-02-14T09:51:41,876 copying and adjusting rna_tools/tools/rna_alignment/rna_align_coverage.py -> build/scripts-3.11 2026-02-14T09:51:41,878 copying and adjusting rna_tools/tools/rna_alignment/rna_align_seq_to_alignment.py -> build/scripts-3.11 2026-02-14T09:51:41,879 copying and adjusting rna_tools/tools/rna_alignment/rna_align_find_core.py -> build/scripts-3.11 2026-02-14T09:51:41,881 copying and adjusting rna_tools/tools/rna_alignment/rna_align_get_ss_from_stk.py -> build/scripts-3.11 2026-02-14T09:51:41,882 copying and adjusting rna_tools/tools/rna_alignment/rna_align_seq_to_alignment.py -> build/scripts-3.11 2026-02-14T09:51:41,884 copying and adjusting rna_tools/tools/rna_alignment/rna_align_fetch_seed.py -> build/scripts-3.11 2026-02-14T09:51:41,885 copying and adjusting rna_tools/tools/rna_alignment/rna_align_fetch_cm.py -> build/scripts-3.11 2026-02-14T09:51:41,886 copying and adjusting rna_tools/tools/rna_alignment/rna_align_sto2csv.py -> build/scripts-3.11 2026-02-14T09:51:41,888 copying and adjusting rna_tools/tools/rna_alignment/utils/rna_alignment_get_species.py -> build/scripts-3.11 2026-02-14T09:51:41,890 copying and adjusting rna_tools/tools/rna_alignment/utils/rna_alignment_process_id.py -> build/scripts-3.11 2026-02-14T09:51:41,892 copying and adjusting rna_tools/tools/rna_alignment/utils/rna_alignment_r2r.py -> build/scripts-3.11 2026-02-14T09:51:41,893 copying and adjusting rna_tools/tools/rna_alignment/rna_align_find_seq_in_alignment.py -> build/scripts-3.11 2026-02-14T09:51:41,895 copying and adjusting rna_tools/tools/rna_alignment/rna_align_foldability.py -> build/scripts-3.11 2026-02-14T09:51:41,897 copying and adjusting rna_tools/tools/rna_pdb_edit_occupancy_bfactor/rna_pdb_edit_occupancy_bfactor.py -> build/scripts-3.11 2026-02-14T09:51:41,899 copying and adjusting rna_tools/tools/rna_refinement/rna_refinement.py -> build/scripts-3.11 2026-02-14T09:51:41,901 copying and adjusting rna_tools/rna_simrnaweb_download_job.py -> build/scripts-3.11 2026-02-14T09:51:41,904 copying and adjusting rna_tools/tools/rna_calc_evo_rmsd/rna_calc_evo_rmsd.py -> build/scripts-3.11 2026-02-14T09:51:41,906 copying and adjusting rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_multi_targets.py -> build/scripts-3.11 2026-02-14T09:51:41,908 copying and adjusting rna_tools/tools/rna_calc_rmsd_trafl/rna_calc_rmsd_trafl.py -> build/scripts-3.11 2026-02-14T09:51:41,910 copying and adjusting rna_tools/tools/rna_calc_rmsd_trafl/rna_cal_rmsd_trafl_plot.py -> build/scripts-3.11 2026-02-14T09:51:41,911 copying and adjusting rna_tools/tools/rna_x3dna/rna_x3dna.py -> build/scripts-3.11 2026-02-14T09:51:41,913 copying and adjusting rna_tools/tools/renum_pdb_to_aln/renum_pdb_to_aln.py -> build/scripts-3.11 2026-02-14T09:51:41,915 copying and adjusting rna_tools/tools/pdbs_measure_atom_dists/pdbs_measure_atom_dists.py -> build/scripts-3.11 2026-02-14T09:51:41,917 copying and adjusting rna_tools/tools/rna_alignment/random_assignment_of_nucleotides.py -> build/scripts-3.11 2026-02-14T09:51:41,919 copying and adjusting rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/select_seq_fromBLAStn_6outfm.py -> build/scripts-3.11 2026-02-14T09:51:41,920 copying and adjusting rna_tools/tools/misc/translate.py -> build/scripts-3.11 2026-02-14T09:51:41,922 copying and adjusting rna_tools/tools/misc/reverse.py -> build/scripts-3.11 2026-02-14T09:51:41,923 copying and adjusting rna_tools/tools/misc/reverse.py -> build/scripts-3.11 2026-02-14T09:51:41,925 copying and adjusting rna_tools/tools/rna_alignment/utils/rna_align_strip_stk.py -> build/scripts-3.11 2026-02-14T09:51:41,926 copying and adjusting rna_tools/tools/pymol_color_by_conserv/pymol_color_by_conserv.py -> build/scripts-3.11 2026-02-14T09:51:41,928 copying and adjusting rna_tools/tools/pymol_preview_generator/pymol_preview_generator.py -> build/scripts-3.11 2026-02-14T09:51:41,930 copying and adjusting rna_tools/tools/pymol_preview_generator/pymol_preview_install.py -> build/scripts-3.11 2026-02-14T09:51:41,931 copying and adjusting rna_tools/tools/rna_binding_affinity/rna_dG2kd.py -> build/scripts-3.11 2026-02-14T09:51:41,933 copying and adjusting rna_tools/tools/rna_binding_affinity/rna_dG2kd.py -> build/scripts-3.11 2026-02-14T09:51:41,934 copying and adjusting rna_tools/tools/rna_binding_affinity/rna_kd2dG.py -> build/scripts-3.11 2026-02-14T09:51:41,935 copying and adjusting rna_tools/tools/rna_binding_affinity/rna_kd2pkd.py -> build/scripts-3.11 2026-02-14T09:51:41,937 copying and adjusting rna_tools/tools/rna_binding_affinity/rna_pkd2dG.py -> build/scripts-3.11 2026-02-14T09:51:41,938 copying and adjusting rna_tools/tools/rna_binding_affinity/rna_pkd2kd.py -> build/scripts-3.11 2026-02-14T09:51:41,940 copying and adjusting rna_tools/tools/clarna_play/rna_clarna_compare.py -> build/scripts-3.11 2026-02-14T09:51:41,943 copying and adjusting rna_tools/tools/clarna_play/rna_clarna_run.py -> build/scripts-3.11 2026-02-14T09:51:41,947 copying and adjusting rna_tools/tools/clarna_play/ClaRNAlib/clarna.py -> build/scripts-3.11 2026-02-14T09:51:41,950 copying and adjusting rna_tools/tools/mq/rna_mq_score.py -> build/scripts-3.11 2026-02-14T09:51:41,952 copying and adjusting rna_tools/tools/mq/rna_mq_collect.py -> build/scripts-3.11 2026-02-14T09:51:41,955 copying and adjusting rna_tools/tools/mq/rna_mq_exp.py -> build/scripts-3.11 2026-02-14T09:51:41,957 copying and adjusting rna_tools/tools/mq/rna_mq_plot.py -> build/scripts-3.11 2026-02-14T09:51:41,958 copying rna_tools/tools/mq/rna_mq_remote.sh -> build/scripts-3.11 2026-02-14T09:51:41,960 copying and adjusting rna_tools/tools/mq/rna_mq_wx_collect.py -> build/scripts-3.11 2026-02-14T09:51:41,962 copying and adjusting rna_tools/tools/mq/RNA3DCNN/rna_mq_rna3dcnn.py -> build/scripts-3.11 2026-02-14T09:51:41,963 copying and adjusting rna_tools/tools/mq/Dfire/rna_mq_dfire.py -> build/scripts-3.11 2026-02-14T09:51:41,965 copying and adjusting rna_tools/tools/mq/ClashScore/rna_mq_clashscore.py -> build/scripts-3.11 2026-02-14T09:51:41,966 copying and adjusting rna_tools/tools/mq/AnalyzeGeometry/rna_mq_analyzegeometry.py -> build/scripts-3.11 2026-02-14T09:51:41,968 copying and adjusting rna_tools/tools/mq/RNAkb/rna_mq_rnakb.py -> build/scripts-3.11 2026-02-14T09:51:41,969 copying and adjusting rna_tools/tools/mq/rsRNASP/rna_mq_rsRNASP.py -> build/scripts-3.11 2026-02-14T09:51:41,971 copying and adjusting rna_tools/tools/mq/eSCORE/rna_mq_eSCORE.py -> build/scripts-3.11 2026-02-14T09:51:41,972 copying and adjusting rna_tools/tools/mq/FARNA/rna_mq_farna.py -> build/scripts-3.11 2026-02-14T09:51:41,974 copying and adjusting rna_tools/tools/mq/FARFAR2/rna_mq_farfar2.py -> build/scripts-3.11 2026-02-14T09:51:41,976 copying and adjusting rna_tools/tools/mq/SimRNA/rna_mq_simrna.py -> build/scripts-3.11 2026-02-14T09:51:41,978 copying and adjusting rna_tools/tools/mq/RASP/rna_mq_rasp.py -> build/scripts-3.11 2026-02-14T09:51:41,979 copying and adjusting rna_tools/tools/md/rna_gromacs_ready.py -> build/scripts-3.11 2026-02-14T09:51:41,981 copying and adjusting rna_tools/tools/md/rna_md.py -> build/scripts-3.11 2026-02-14T09:51:41,983 copying and adjusting rna_tools/tools/md/rna_minimize.py -> build/scripts-3.11 2026-02-14T09:51:41,984 copying and adjusting rna_tools/tools/md/rna_traj_n.py -> build/scripts-3.11 2026-02-14T09:51:41,986 copying and adjusting rna_tools/tools/md/rna_traj_range.py -> build/scripts-3.11 2026-02-14T09:51:41,988 copying and adjusting rna_tools/tools/md/rna_traj_nohetm.py -> build/scripts-3.11 2026-02-14T09:51:41,989 copying and adjusting rna_tools/tools/triplexibility/triplexibility.py -> build/scripts-3.11 2026-02-14T09:51:41,992 copying and adjusting rna_tools/tools/triplexibility/triplexibility2.py -> build/scripts-3.11 2026-02-14T09:51:41,994 copying and adjusting rna_tools/tools/triplexibility/trx_mutagen_allvsall.py -> build/scripts-3.11 2026-02-14T09:51:41,996 copying and adjusting rna_tools/tools/triplexibility/trx_mutagen.py -> build/scripts-3.11 2026-02-14T09:51:41,998 copying and adjusting rna_tools/tools/triplexibility/trx_score_allvsall.py -> build/scripts-3.11 2026-02-14T09:51:42,000 copying and adjusting rna_tools/tools/triplexibility/trx_score.py -> build/scripts-3.11 2026-02-14T09:51:42,002 copying and adjusting rna_tools/tools/triplexibility/trx_score_onCol.py -> build/scripts-3.11 2026-02-14T09:51:42,004 copying and adjusting rna_tools/tools/df/rna_df_csv_sort.py -> build/scripts-3.11 2026-02-14T09:51:42,006 copying and adjusting rna_tools/tools/df/rna_df_concat.py -> build/scripts-3.11 2026-02-14T09:51:42,008 copying and adjusting rna_tools/tools/df/rna_df_merge.py -> build/scripts-3.11 2026-02-14T09:51:42,010 copying and adjusting rna_tools/tools/df/rna_df_merge_on.py -> build/scripts-3.11 2026-02-14T09:51:42,012 copying and adjusting rna_tools/tools/df/rna_df_merge_two.py -> build/scripts-3.11 2026-02-14T09:51:42,014 copying and adjusting rna_tools/tools/misc/rna_ok_mail.py -> build/scripts-3.11 2026-02-14T09:51:42,016 copying rna_tools/tools/misc/rna_ok -> build/scripts-3.11 2026-02-14T09:51:42,018 copying and adjusting rna_tools/tools/misc/rna_test_cuda.py -> build/scripts-3.11 2026-02-14T09:51:42,020 copying and adjusting rna_tools/tools/PyMOL4RNA/rna_draw_edges.py -> build/scripts-3.11 2026-02-14T09:51:42,022 copying and adjusting rna_tools/tools/rna_calc_hbonds/rna_calc_hbonds.py -> build/scripts-3.11 2026-02-14T09:51:42,024 copying and adjusting rna_tools/tools/rna_pdb_merge_structure_with_fragments/rna_pdb_merge_structure_with_fragments.py -> build/scripts-3.11 2026-02-14T09:51:42,026 copying and adjusting rna_tools/tools/clarna_app/rna_clarna2graph.py -> build/scripts-3.11 2026-02-14T09:51:42,028 changing mode of build/scripts-3.11/rna_pdb_tools.py from 644 to 755 2026-02-14T09:51:42,029 changing mode of build/scripts-3.11/rna_calc_fenergy.py from 644 to 755 2026-02-14T09:51:42,030 changing mode of build/scripts-3.11/rna_pdb_replace.py from 644 to 755 2026-02-14T09:51:42,031 changing mode of build/scripts-3.11/rna_standardize.py from 644 to 755 2026-02-14T09:51:42,031 changing mode of build/scripts-3.11/rna_pdb_inspect.py from 644 to 755 2026-02-14T09:51:42,032 changing mode of build/scripts-3.11/rna_cif2pdb.py from 644 to 755 2026-02-14T09:51:42,032 changing mode of build/scripts-3.11/rna_pdb_fetch.py from 644 to 755 2026-02-14T09:51:42,033 changing mode of build/scripts-3.11/rna_pdb_fetch_header.py from 644 to 755 2026-02-14T09:51:42,034 changing mode of build/scripts-3.11/rna_tools_which.py from 644 to 755 2026-02-14T09:51:42,034 changing mode of build/scripts-3.11/rna_tools_demo.py from 644 to 755 2026-02-14T09:51:42,035 changing mode of build/scripts-3.11/rna_workflow.py from 644 to 755 2026-02-14T09:51:42,035 changing mode of build/scripts-3.11/rna_calc_rmsd.py from 644 to 755 2026-02-14T09:51:42,036 changing mode of build/scripts-3.11/rna_calc_rmsd_all_vs_all.py from 644 to 755 2026-02-14T09:51:42,036 changing mode of build/scripts-3.11/rna_calc_rmsd_biopython.py from 644 to 755 2026-02-14T09:51:42,037 changing mode of build/scripts-3.11/rna_plot_alignment_bounds.py from 644 to 755 2026-02-14T09:51:42,037 changing mode of build/scripts-3.11/rna_torsions.py from 644 to 755 2026-02-14T09:51:42,038 changing mode of build/scripts-3.11/diffpdb.py from 644 to 755 2026-02-14T09:51:42,038 changing mode of build/scripts-3.11/rna_clanstix.py from 644 to 755 2026-02-14T09:51:42,039 changing mode of build/scripts-3.11/rna_dot2ct.py from 644 to 755 2026-02-14T09:51:42,040 changing mode of build/scripts-3.11/rna_secondary_structure_prediction.py from 644 to 755 2026-02-14T09:51:42,040 changing mode of build/scripts-3.11/rna_prediction_significance.py from 644 to 755 2026-02-14T09:51:42,041 changing mode of build/scripts-3.11/rna_pdb_merge_into_one.py from 644 to 755 2026-02-14T09:51:42,041 changing mode of build/scripts-3.11/rna_calc_inf.py from 644 to 755 2026-02-14T09:51:42,042 changing mode of build/scripts-3.11/rna_pk_simrna_to_one_line.py from 644 to 755 2026-02-14T09:51:42,042 changing mode of build/scripts-3.11/rna_clarna_app.py from 644 to 755 2026-02-14T09:51:42,043 changing mode of build/scripts-3.11/rna_helix_vis.py from 644 to 755 2026-02-14T09:51:42,043 changing mode of build/scripts-3.11/rna_add_chain.py from 644 to 755 2026-02-14T09:51:42,044 changing mode of build/scripts-3.11/rna_dict2fasta.py from 644 to 755 2026-02-14T09:51:42,044 changing mode of build/scripts-3.11/rna_sali2dotbracket.py from 644 to 755 2026-02-14T09:51:42,044 changing mode of build/scripts-3.11/rna_rosetta_run.py from 644 to 755 2026-02-14T09:51:42,045 changing mode of build/scripts-3.11/rna_rosetta_cluster.py from 644 to 755 2026-02-14T09:51:42,045 changing mode of build/scripts-3.11/rna_rosetta_min.py from 644 to 755 2026-02-14T09:51:42,046 changing mode of build/scripts-3.11/rna_rosetta_n.py from 644 to 755 2026-02-14T09:51:42,046 changing mode of build/scripts-3.11/rna_rosetta_silent_file_sort_and_select.py from 644 to 755 2026-02-14T09:51:42,046 changing mode of build/scripts-3.11/rna_rosetta_extract_lowscore_decoys.py from 644 to 755 2026-02-14T09:51:42,047 changing mode of build/scripts-3.11/rna_rosetta_check_progress.py from 644 to 755 2026-02-14T09:51:42,047 changing mode of build/scripts-3.11/rna_rosetta_head.py from 644 to 755 2026-02-14T09:51:42,048 changing mode of build/scripts-3.11/rna_rosetta_extract.py from 644 to 755 2026-02-14T09:51:42,048 changing mode of build/scripts-3.11/rna_rosetta_get_score.py from 644 to 755 2026-02-14T09:51:42,049 changing mode of build/scripts-3.11/rna_rosetta_silent_random.py from 644 to 755 2026-02-14T09:51:42,049 changing mode of build/scripts-3.11/rna_rosetta_silent_split.py from 644 to 755 2026-02-14T09:51:42,049 changing mode of build/scripts-3.11/rna_simrna_lowest.py from 644 to 755 2026-02-14T09:51:42,050 changing mode of build/scripts-3.11/rna_simrna_extract.py from 644 to 755 2026-02-14T09:51:42,050 changing mode of build/scripts-3.11/rna_simrna_cluster.py from 644 to 755 2026-02-14T09:51:42,051 changing mode of build/scripts-3.11/rna_plot_hist.py from 644 to 755 2026-02-14T09:51:42,051 changing mode of 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644 to 755 2026-02-14T09:51:42,057 changing mode of build/scripts-3.11/rna_align_seq_to_alignment.py from 644 to 755 2026-02-14T09:51:42,058 changing mode of build/scripts-3.11/rna_align_find_core.py from 644 to 755 2026-02-14T09:51:42,058 changing mode of build/scripts-3.11/rna_align_get_ss_from_stk.py from 644 to 755 2026-02-14T09:51:42,059 changing mode of build/scripts-3.11/rna_align_fetch_seed.py from 644 to 755 2026-02-14T09:51:42,059 changing mode of build/scripts-3.11/rna_align_fetch_cm.py from 644 to 755 2026-02-14T09:51:42,060 changing mode of build/scripts-3.11/rna_align_sto2csv.py from 644 to 755 2026-02-14T09:51:42,060 changing mode of build/scripts-3.11/rna_alignment_get_species.py from 644 to 755 2026-02-14T09:51:42,061 changing mode of build/scripts-3.11/rna_alignment_process_id.py from 644 to 755 2026-02-14T09:51:42,062 changing mode of build/scripts-3.11/rna_alignment_r2r.py from 644 to 755 2026-02-14T09:51:42,062 changing mode of build/scripts-3.11/rna_align_find_seq_in_alignment.py from 644 to 755 2026-02-14T09:51:42,062 changing mode of build/scripts-3.11/rna_align_foldability.py from 644 to 755 2026-02-14T09:51:42,063 changing mode of build/scripts-3.11/rna_pdb_edit_occupancy_bfactor.py from 644 to 755 2026-02-14T09:51:42,063 changing mode of build/scripts-3.11/rna_refinement.py from 644 to 755 2026-02-14T09:51:42,064 changing mode of build/scripts-3.11/rna_simrnaweb_download_job.py from 644 to 755 2026-02-14T09:51:42,065 changing mode of build/scripts-3.11/rna_calc_evo_rmsd.py from 644 to 755 2026-02-14T09:51:42,065 changing mode of build/scripts-3.11/rna_calc_rmsd_multi_targets.py from 644 to 755 2026-02-14T09:51:42,065 changing mode of build/scripts-3.11/rna_calc_rmsd_trafl.py from 644 to 755 2026-02-14T09:51:42,066 changing mode of build/scripts-3.11/rna_cal_rmsd_trafl_plot.py from 644 to 755 2026-02-14T09:51:42,066 changing mode of build/scripts-3.11/rna_x3dna.py from 644 to 755 2026-02-14T09:51:42,067 changing mode of build/scripts-3.11/renum_pdb_to_aln.py from 644 to 755 2026-02-14T09:51:42,067 changing mode of build/scripts-3.11/pdbs_measure_atom_dists.py from 644 to 755 2026-02-14T09:51:42,068 changing mode of build/scripts-3.11/random_assignment_of_nucleotides.py from 644 to 755 2026-02-14T09:51:42,068 changing mode of build/scripts-3.11/select_seq_fromBLAStn_6outfm.py from 644 to 755 2026-02-14T09:51:42,069 changing mode of build/scripts-3.11/translate.py from 644 to 755 2026-02-14T09:51:42,069 changing mode of build/scripts-3.11/reverse.py from 644 to 755 2026-02-14T09:51:42,070 changing mode of build/scripts-3.11/rna_align_strip_stk.py from 644 to 755 2026-02-14T09:51:42,070 changing mode of build/scripts-3.11/pymol_color_by_conserv.py from 644 to 755 2026-02-14T09:51:42,071 changing mode of build/scripts-3.11/pymol_preview_generator.py from 644 to 755 2026-02-14T09:51:42,071 changing mode of build/scripts-3.11/pymol_preview_install.py from 644 to 755 2026-02-14T09:51:42,072 changing mode of build/scripts-3.11/rna_dG2kd.py from 644 to 755 2026-02-14T09:51:42,072 changing mode of build/scripts-3.11/rna_kd2dG.py from 644 to 755 2026-02-14T09:51:42,073 changing mode of build/scripts-3.11/rna_kd2pkd.py from 644 to 755 2026-02-14T09:51:42,073 changing mode of build/scripts-3.11/rna_pkd2dG.py from 644 to 755 2026-02-14T09:51:42,074 changing mode of build/scripts-3.11/rna_pkd2kd.py from 644 to 755 2026-02-14T09:51:42,074 changing mode of build/scripts-3.11/rna_clarna_compare.py from 644 to 755 2026-02-14T09:51:42,075 changing mode of build/scripts-3.11/rna_clarna_run.py from 644 to 755 2026-02-14T09:51:42,076 changing mode of build/scripts-3.11/clarna.py from 644 to 755 2026-02-14T09:51:42,076 changing mode of build/scripts-3.11/rna_mq_score.py from 644 to 755 2026-02-14T09:51:42,077 changing mode of build/scripts-3.11/rna_mq_collect.py from 644 to 755 2026-02-14T09:51:42,077 changing mode of build/scripts-3.11/rna_mq_exp.py from 644 to 755 2026-02-14T09:51:42,078 changing mode of build/scripts-3.11/rna_mq_plot.py from 644 to 755 2026-02-14T09:51:42,078 changing mode of build/scripts-3.11/rna_mq_wx_collect.py from 644 to 755 2026-02-14T09:51:42,079 changing mode of build/scripts-3.11/rna_mq_rna3dcnn.py from 644 to 755 2026-02-14T09:51:42,079 changing mode of build/scripts-3.11/rna_mq_dfire.py from 644 to 755 2026-02-14T09:51:42,080 changing mode of build/scripts-3.11/rna_mq_clashscore.py from 644 to 755 2026-02-14T09:51:42,080 changing mode of build/scripts-3.11/rna_mq_analyzegeometry.py from 644 to 755 2026-02-14T09:51:42,081 changing mode of build/scripts-3.11/rna_mq_rnakb.py from 644 to 755 2026-02-14T09:51:42,082 changing mode of build/scripts-3.11/rna_mq_rsRNASP.py from 644 to 755 2026-02-14T09:51:42,082 changing mode of build/scripts-3.11/rna_mq_eSCORE.py from 644 to 755 2026-02-14T09:51:42,083 changing mode of build/scripts-3.11/rna_mq_farna.py from 644 to 755 2026-02-14T09:51:42,083 changing mode of build/scripts-3.11/rna_mq_farfar2.py from 644 to 755 2026-02-14T09:51:42,084 changing mode of build/scripts-3.11/rna_mq_simrna.py from 644 to 755 2026-02-14T09:51:42,084 changing mode of build/scripts-3.11/rna_mq_rasp.py from 644 to 755 2026-02-14T09:51:42,085 changing mode of build/scripts-3.11/rna_gromacs_ready.py from 644 to 755 2026-02-14T09:51:42,085 changing mode of build/scripts-3.11/rna_md.py from 644 to 755 2026-02-14T09:51:42,086 changing mode of build/scripts-3.11/rna_minimize.py from 644 to 755 2026-02-14T09:51:42,086 changing mode of build/scripts-3.11/rna_traj_n.py from 644 to 755 2026-02-14T09:51:42,087 changing mode of build/scripts-3.11/rna_traj_range.py from 644 to 755 2026-02-14T09:51:42,087 changing mode of build/scripts-3.11/rna_traj_nohetm.py from 644 to 755 2026-02-14T09:51:42,087 changing mode of build/scripts-3.11/triplexibility.py from 644 to 755 2026-02-14T09:51:42,088 changing mode of build/scripts-3.11/triplexibility2.py from 644 to 755 2026-02-14T09:51:42,088 changing mode of build/scripts-3.11/trx_mutagen_allvsall.py from 644 to 755 2026-02-14T09:51:42,089 changing mode of build/scripts-3.11/trx_mutagen.py from 644 to 755 2026-02-14T09:51:42,089 changing mode of build/scripts-3.11/trx_score_allvsall.py from 644 to 755 2026-02-14T09:51:42,090 changing mode of build/scripts-3.11/trx_score.py from 644 to 755 2026-02-14T09:51:42,090 changing mode of build/scripts-3.11/trx_score_onCol.py from 644 to 755 2026-02-14T09:51:42,091 changing mode of build/scripts-3.11/rna_df_csv_sort.py from 644 to 755 2026-02-14T09:51:42,091 changing mode of build/scripts-3.11/rna_df_concat.py from 644 to 755 2026-02-14T09:51:42,092 changing mode of build/scripts-3.11/rna_df_merge.py from 644 to 755 2026-02-14T09:51:42,092 changing mode of build/scripts-3.11/rna_df_merge_on.py from 644 to 755 2026-02-14T09:51:42,093 changing mode of build/scripts-3.11/rna_df_merge_two.py from 644 to 755 2026-02-14T09:51:42,094 changing mode of build/scripts-3.11/rna_ok_mail.py from 644 to 755 2026-02-14T09:51:42,094 changing mode of build/scripts-3.11/rna_test_cuda.py from 644 to 755 2026-02-14T09:51:42,095 changing mode of build/scripts-3.11/rna_draw_edges.py from 644 to 755 2026-02-14T09:51:42,095 changing mode of build/scripts-3.11/rna_calc_hbonds.py from 644 to 755 2026-02-14T09:51:42,096 changing mode of build/scripts-3.11/rna_pdb_merge_structure_with_fragments.py from 644 to 755 2026-02-14T09:51:42,096 changing mode of build/scripts-3.11/rna_clarna2graph.py from 644 to 755 2026-02-14T09:51:42,100 installing to build/bdist.linux-armv7l/wheel 2026-02-14T09:51:42,100 running install 2026-02-14T09:51:42,125 running install_lib 2026-02-14T09:51:42,134 creating build/bdist.linux-armv7l 2026-02-14T09:51:42,135 creating build/bdist.linux-armv7l/wheel 2026-02-14T09:51:42,137 creating build/bdist.linux-armv7l/wheel/rna_tools 2026-02-14T09:51:42,138 copying build/lib/rna_tools/_version.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-02-14T09:51:42,140 copying build/lib/rna_tools/rna_cif2pdb.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-02-14T09:51:42,142 copying build/lib/rna_tools/rna_pdb_fetch.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-02-14T09:51:42,144 copying build/lib/rna_tools/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-02-14T09:51:42,146 copying build/lib/rna_tools/rna_pdb_tools.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-02-14T09:51:42,149 copying build/lib/rna_tools/rna_dot2ct.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-02-14T09:51:42,151 copying build/lib/rna_tools/rna_torsions.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-02-14T09:51:42,153 copying build/lib/rna_tools/rna_tools_config.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-02-14T09:51:42,155 creating build/bdist.linux-armv7l/wheel/rna_tools/data 2026-02-14T09:51:42,156 copying build/lib/rna_tools/data/C.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/data 2026-02-14T09:51:42,158 copying build/lib/rna_tools/data/260c8ff6-f24e-4eff-9760-1831407fc770_ALL_thrs5.30A_clust01-000001_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/data 2026-02-14T09:51:42,162 copying build/lib/rna_tools/data/o2prim.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/data 2026-02-14T09:51:42,164 copying build/lib/rna_tools/data/G.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/data 2026-02-14T09:51:42,165 copying build/lib/rna_tools/data/rna_pdb_errors.csv -> build/bdist.linux-armv7l/wheel/rna_tools/data 2026-02-14T09:51:42,167 copying build/lib/rna_tools/data/pdb_ids.txt -> build/bdist.linux-armv7l/wheel/rna_tools/data 2026-02-14T09:51:42,169 copying build/lib/rna_tools/data/shape.txt -> build/bdist.linux-armv7l/wheel/rna_tools/data 2026-02-14T09:51:42,170 copying build/lib/rna_tools/data/ACGU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/data 2026-02-14T09:51:42,173 copying build/lib/rna_tools/data/PO3_inner.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/data 2026-02-14T09:51:42,174 copying build/lib/rna_tools/data/U.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/data 2026-02-14T09:51:42,176 copying build/lib/rna_tools/data/op4.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/data 2026-02-14T09:51:42,178 copying build/lib/rna_tools/data/A.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/data 2026-02-14T09:51:42,183 copying build/lib/rna_tools/rchie.png -> build/bdist.linux-armv7l/wheel/rna_tools 2026-02-14T09:51:42,199 copying build/lib/rna_tools/rna_pdb_seq.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-02-14T09:51:42,201 copying build/lib/rna_tools/rna_pdb_inspect.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-02-14T09:51:42,203 copying build/lib/rna_tools/rna_pdb_fetch_header.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-02-14T09:51:42,205 copying build/lib/rna_tools/SecondaryStructure.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-02-14T09:51:42,207 copying build/lib/rna_tools/rna_tools_lib.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-02-14T09:51:42,210 copying build/lib/rna_tools/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools 2026-02-14T09:51:42,212 copying build/lib/rna_tools/rna_secondary_structure_prediction.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-02-14T09:51:42,214 copying build/lib/rna_tools/rna_tools_test_all.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-02-14T09:51:42,216 copying build/lib/rna_tools/rna_pdb_replace.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-02-14T09:51:42,218 copying build/lib/rna_tools/rna_simrnaweb_download_job.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-02-14T09:51:42,220 copying build/lib/rna_tools/Seq.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-02-14T09:51:42,223 creating build/bdist.linux-armv7l/wheel/rna_tools/tests 2026-02-14T09:51:42,225 copying build/lib/rna_tools/tests/test_seq_mcfold.py -> build/bdist.linux-armv7l/wheel/rna_tools/tests 2026-02-14T09:51:42,227 copying build/lib/rna_tools/tests/test_eval.py -> build/bdist.linux-armv7l/wheel/rna_tools/tests 2026-02-14T09:51:42,228 copying build/lib/rna_tools/tests/test_rna_ss_pred.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tests 2026-02-14T09:51:42,231 copying build/lib/rna_tools/tests/test_seq_mcfold2.py -> build/bdist.linux-armv7l/wheel/rna_tools/tests 2026-02-14T09:51:42,233 copying build/lib/rna_tools/tests/test_seq_cyclefold.py -> build/bdist.linux-armv7l/wheel/rna_tools/tests 2026-02-14T09:51:42,236 creating build/bdist.linux-armv7l/wheel/rna_tools/tests/test_import_module 2026-02-14T09:51:42,237 copying build/lib/rna_tools/tests/test_import_module/test_import_rna_tools.py -> build/bdist.linux-armv7l/wheel/rna_tools/tests/test_import_module 2026-02-14T09:51:42,239 copying build/lib/rna_tools/tests/test_import_module/rchie.png -> build/bdist.linux-armv7l/wheel/rna_tools/tests/test_import_module 2026-02-14T09:51:42,245 creating build/bdist.linux-armv7l/wheel/rna_tools/tests/test_import_module/test_data 2026-02-14T09:51:42,246 copying build/lib/rna_tools/tests/test_import_module/test_data/RF00167.stockholm.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tests/test_import_module/test_data 2026-02-14T09:51:42,249 copying build/lib/rna_tools/tests/test_rnafold.py -> build/bdist.linux-armv7l/wheel/rna_tools/tests 2026-02-14T09:51:42,252 creating build/bdist.linux-armv7l/wheel/rna_tools/tools 2026-02-14T09:51:42,254 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator 2026-02-14T09:51:42,256 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/bash 2026-02-14T09:51:42,257 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow 2026-02-14T09:51:42,259 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents 2026-02-14T09:51:42,260 copying build/lib/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents/Info.plist -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents 2026-02-14T09:51:42,263 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents/QuickLook 2026-02-14T09:51:42,264 copying build/lib/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents/QuickLook/Thumbnail.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents/QuickLook 2026-02-14T09:51:42,267 copying build/lib/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents/document.wflow -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents 2026-02-14T09:51:42,270 copying build/lib/rna_tools/tools/pymol_preview_generator/pymol_preview_install.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator 2026-02-14T09:51:42,272 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/docs 2026-02-14T09:51:42,273 copying build/lib/rna_tools/tools/pymol_preview_generator/docs/preview.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/docs 2026-02-14T09:51:42,286 copying build/lib/rna_tools/tools/pymol_preview_generator/docs/demo.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/docs 2026-02-14T09:51:42,306 copying build/lib/rna_tools/tools/pymol_preview_generator/docs/popup-ok.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/docs 2026-02-14T09:51:42,309 copying build/lib/rna_tools/tools/pymol_preview_generator/docs/linux.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/docs 2026-02-14T09:51:42,325 copying build/lib/rna_tools/tools/pymol_preview_generator/docs/preview_2021-10-24_at_11.29.15.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/docs 2026-02-14T09:51:42,336 copying build/lib/rna_tools/tools/pymol_preview_generator/docs/demo.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/docs 2026-02-14T09:51:42,363 copying build/lib/rna_tools/tools/pymol_preview_generator/docs/popup-progress.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/docs 2026-02-14T09:51:42,366 copying build/lib/rna_tools/tools/pymol_preview_generator/readme.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator 2026-02-14T09:51:42,368 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/zsh 2026-02-14T09:51:42,370 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow 2026-02-14T09:51:42,372 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents 2026-02-14T09:51:42,373 copying build/lib/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents/Info.plist -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents 2026-02-14T09:51:42,375 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents/QuickLook 2026-02-14T09:51:42,376 copying build/lib/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents/QuickLook/Thumbnail.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents/QuickLook 2026-02-14T09:51:42,378 copying build/lib/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents/document.wflow -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents 2026-02-14T09:51:42,380 copying build/lib/rna_tools/tools/pymol_preview_generator/pymol_preview_generator.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator 2026-02-14T09:51:42,383 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd 2026-02-14T09:51:42,383 copying build/lib/rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd 2026-02-14T09:51:42,386 copying build/lib/rna_tools/tools/rna_calc_rmsd/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd 2026-02-14T09:51:42,388 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_output 2026-02-14T09:51:42,389 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_output/pistol_rmsd_name-rmsd-column.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_output 2026-02-14T09:51:42,390 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_output/pistol_rmsd.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_output 2026-02-14T09:51:42,392 copying build/lib/rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_biopython.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd 2026-02-14T09:51:42,395 copying build/lib/rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_multi_targets.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd 2026-02-14T09:51:42,397 copying build/lib/rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_pymol.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd 2026-02-14T09:51:42,400 copying build/lib/rna_tools/tools/rna_calc_rmsd/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd 2026-02-14T09:51:42,402 copying build/lib/rna_tools/tools/rna_calc_rmsd/rna_plot_alignment_bounds.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd 2026-02-14T09:51:42,404 copying build/lib/rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_all_vs_all.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd 2026-02-14T09:51:42,407 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-02-14T09:51:42,408 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/struc1.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-02-14T09:51:42,412 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/21_solution_0_ChainB.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-02-14T09:51:42,414 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/21_solution_2.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-02-14T09:51:42,415 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/plot.ipynb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-02-14T09:51:42,420 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/21_solution_0_ChainA.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-02-14T09:51:42,422 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/struc3.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-02-14T09:51:42,426 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/struc4.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-02-14T09:51:42,431 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/crops 2026-02-14T09:51:42,432 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/crops/3jbv_A_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/crops 2026-02-14T09:51:42,478 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/crops/rRNA_3jbv_A_PrepCaching_geo0_dmb20.0_fcd20.0_gpu1_cpu4_eblk24_blk4_bba1_Pem_rosettaViol0_bbbl0_ga1_n100_s49_df3-18b-fasr_one_prep_pred_3jbv_A_250_3.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/crops 2026-02-14T09:51:42,486 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/crops/3jbv_A.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/crops 2026-02-14T09:51:42,527 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/crops/rRNA_3jbv_A_PrepCaching_geo0_dmb20.0_fcd20.0_gpu1_cpu4_eblk24_blk4_bba1_Pem_rosettaViol0_bbbl0_ga1_n100_s49_df3-18b-fasr_one_prep_pred_3jbv_A_250.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/crops 2026-02-14T09:51:42,537 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/crops/seqs.fasta -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/crops 2026-02-14T09:51:42,539 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/crops/rRNA_3jbv_A_PrepCaching_geo0_dmb20.0_fcd20.0_gpu1_cpu4_eblk24_blk4_bba1_Pem_rosettaViol0_bbbl0_ga1_n100_s49_df3-18b-fasr_one_prep_pred_3jbv_A_294.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/crops 2026-02-14T09:51:42,548 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/rmsd_calc_dir.tsv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-02-14T09:51:42,550 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/rmsd_calc_dir_to_target_fit.tsv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-02-14T09:51:42,552 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/struc2.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-02-14T09:51:42,556 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/21_solution_1_ChainA.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-02-14T09:51:42,559 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets 2026-02-14T09:51:42,560 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21 2026-02-14T09:51:42,562 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/21_Adamiak_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21 2026-02-14T09:51:42,566 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2026-02-14T09:51:42,567 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions/21_solution_2.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2026-02-14T09:51:42,571 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions/21_solution_0_ChainB.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2026-02-14T09:51:42,575 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions/21_solution_1_ChainA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2026-02-14T09:51:42,578 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions/21_solution_1_ChainB.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2026-02-14T09:51:42,582 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions/21_solution_0_ChainA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2026-02-14T09:51:42,585 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/21_ChenHighLig_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21 2026-02-14T09:51:42,589 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/21_Das_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21 2026-02-14T09:51:42,593 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/21_3dRNA_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21 2026-02-14T09:51:42,596 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7 2026-02-14T09:51:42,598 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/7.aln -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7 2026-02-14T09:51:42,600 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/7_solution_0.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7 2026-02-14T09:51:42,607 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/7_solution_1.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7 2026-02-14T09:51:42,614 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/models 2026-02-14T09:51:42,615 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/models/7_Major_1.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/models 2026-02-14T09:51:42,628 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/models/7_Ding_1.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/models 2026-02-14T09:51:42,635 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-02-14T09:51:42,636 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways/rmsd_c1p.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-02-14T09:51:42,638 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways/rmsd_all.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-02-14T09:51:42,640 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways/yC_5LJ3_U2U6_core_mdrFx_onlyTriplex_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-02-14T09:51:42,642 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways/backbone+sugar.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-02-14T09:51:42,644 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways/yC_5LJ3_U2U6_core_mdrFx_addh_MD_100.pdb_rpr.pdb_fixChains.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-02-14T09:51:42,648 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways/yC_5LJ3_U2U6_core_mdrFx_addh_MD_1_rpr_rchain.pdb_fixChains.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-02-14T09:51:42,651 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways/rmsd_bases.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-02-14T09:51:42,653 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways/rmsd.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-02-14T09:51:42,655 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/rna_calc_rmsd_multi_targets_output.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-02-14T09:51:42,657 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/rmsd_calc_dir_to_target_align.tsv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-02-14T09:51:42,659 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/pistol 2026-02-14T09:51:42,661 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters 2026-02-14T09:51:42,662 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters/pistol_thrs0.50A_clust03-000001_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters 2026-02-14T09:51:42,666 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters/5k7c_clean_onechain_renumber_as_puzzle_srr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters 2026-02-14T09:51:42,670 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters/pistol_thrs0.50A_clust02-000001_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters 2026-02-14T09:51:42,673 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters/pistol_thrs0.50A_clust01-000001_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters 2026-02-14T09:51:42,677 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol/5k7c_clean_onechain_renumber_as_puzzle_srr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/pistol 2026-02-14T09:51:42,681 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/rmsd_calc_dir_to_target.tsv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-02-14T09:51:42,683 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/21_solution_1_ChainB.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-02-14T09:51:42,685 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib 2026-02-14T09:51:42,686 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib 2026-02-14T09:51:42,688 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2026-02-14T09:51:42,689 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2026-02-14T09:51:42,691 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2026-02-14T09:51:42,692 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/rmsds.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2026-02-14T09:51:42,694 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/calculate_rmsd.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2026-02-14T09:51:42,696 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/LICENSE -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2026-02-14T09:51:42,698 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2026-02-14T09:51:42,700 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2026-02-14T09:51:42,701 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/ethane.xyz -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2026-02-14T09:51:42,703 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/ethane_translate.xyz -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2026-02-14T09:51:42,705 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/1ypa.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2026-02-14T09:51:42,708 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/ethane_mini.xyz -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2026-02-14T09:51:42,710 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/ethane_bond.xyz -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2026-02-14T09:51:42,712 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/3ci2.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2026-02-14T09:51:42,715 copying build/lib/rna_tools/tools/rna_calc_rmsd/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd 2026-02-14T09:51:42,718 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels 2026-02-14T09:51:42,719 copying build/lib/rna_tools/tools/rna_multimodels/test_util.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels 2026-02-14T09:51:42,721 copying build/lib/rna_tools/tools/rna_multimodels/rna_pdb_merge_into_one.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels 2026-02-14T09:51:42,723 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels/data 2026-02-14T09:51:42,724 copying build/lib/rna_tools/tools/rna_multimodels/data/seq.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels/data 2026-02-14T09:51:42,725 copying build/lib/rna_tools/tools/rna_multimodels/data/rp17_n3_ideal.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels/data 2026-02-14T09:51:42,736 copying build/lib/rna_tools/tools/rna_multimodels/readme.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels 2026-02-14T09:51:42,738 copying build/lib/rna_tools/tools/rna_multimodels/check.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels 2026-02-14T09:51:42,740 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels/test_out 2026-02-14T09:51:42,741 copying build/lib/rna_tools/tools/rna_multimodels/test_out/rp17.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels/test_out 2026-02-14T09:51:42,749 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels/test_in 2026-02-14T09:51:42,750 copying build/lib/rna_tools/tools/rna_multimodels/test_in/17_Adamiak_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels/test_in 2026-02-14T09:51:42,754 copying build/lib/rna_tools/tools/rna_multimodels/test_in/17_Bujnicki_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels/test_in 2026-02-14T09:51:42,757 copying build/lib/rna_tools/tools/rna_multimodels/test_in/17_Chen_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels/test_in 2026-02-14T09:51:42,762 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd 2026-02-14T09:51:42,763 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/rna_calc_evo_rmsd.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd 2026-02-14T09:51:42,765 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd 2026-02-14T09:51:42,767 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/output.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd 2026-02-14T09:51:42,769 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/evoclust_rmsd.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd 2026-02-14T09:51:42,770 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/evoclust_rmsd.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd 2026-02-14T09:51:42,773 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/RNAmodel.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd 2026-02-14T09:51:42,775 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/RNAalignment.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd 2026-02-14T09:51:42,777 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd 2026-02-14T09:51:42,779 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/readme.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd 2026-02-14T09:51:42,782 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-02-14T09:51:42,783 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data/1ehz_std.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-02-14T09:51:42,787 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data/trna_no_selector.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-02-14T09:51:42,789 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data/trna.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-02-14T09:51:42,790 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data/4qk8_cl.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-02-14T09:51:42,795 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data/4qlm_cl.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-02-14T09:51:42,806 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data/aln_nox.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-02-14T09:51:42,808 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-02-14T09:51:42,810 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data/mapping.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-02-14T09:51:42,812 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data/6Y2L_2_std.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-02-14T09:51:42,817 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data/aln.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-02-14T09:51:42,819 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-02-14T09:51:42,820 copying build/lib/rna_tools/tools/rna_alignment/rna_align_coverage.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-02-14T09:51:42,822 copying build/lib/rna_tools/tools/rna_alignment/rna_align_fetch_seed.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-02-14T09:51:42,823 copying build/lib/rna_tools/tools/rna_alignment/rna_align_foldability.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-02-14T09:51:42,826 copying build/lib/rna_tools/tools/rna_alignment/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-02-14T09:51:42,828 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_output 2026-02-14T09:51:42,828 copying build/lib/rna_tools/tools/rna_alignment/test_output/out.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_output 2026-02-14T09:51:42,830 copying build/lib/rna_tools/tools/rna_alignment/test_output/subset.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_output 2026-02-14T09:51:42,832 copying build/lib/rna_tools/tools/rna_alignment/test_output/RF00167_subset.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_output 2026-02-14T09:51:42,834 copying build/lib/rna_tools/tools/rna_alignment/test_output/plot.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_output 2026-02-14T09:51:42,838 copying build/lib/rna_tools/tools/rna_alignment/test_output/ade_gapped.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_output 2026-02-14T09:51:42,839 copying build/lib/rna_tools/tools/rna_alignment/test_output/mini.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_output 2026-02-14T09:51:42,841 copying build/lib/rna_tools/tools/rna_alignment/rna_alignment_r2r.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-02-14T09:51:42,843 copying build/lib/rna_tools/tools/rna_alignment/rna_alignment_IE2.ipynb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-02-14T09:51:42,854 copying build/lib/rna_tools/tools/rna_alignment/test_rchie.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-02-14T09:51:42,856 copying build/lib/rna_tools/tools/rna_alignment/rna_align_fetch_cm.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-02-14T09:51:42,858 copying build/lib/rna_tools/tools/rna_alignment/rna_align_find_core.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-02-14T09:51:42,859 copying build/lib/rna_tools/tools/rna_alignment/rna_alignment.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-02-14T09:51:42,862 copying build/lib/rna_tools/tools/rna_alignment/rna_align_get_ss_from_stk.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-02-14T09:51:42,864 copying build/lib/rna_tools/tools/rna_alignment/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-02-14T09:51:42,865 copying build/lib/rna_tools/tools/rna_alignment/rna_alignment.ipynb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-02-14T09:51:42,977 copying build/lib/rna_tools/tools/rna_alignment/rna_align_get_ss_from_fasta.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-02-14T09:51:42,979 copying build/lib/rna_tools/tools/rna_alignment/rna_align_sto2csv.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-02-14T09:51:42,981 copying build/lib/rna_tools/tools/rna_alignment/rna_align_distance_to_seq.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-02-14T09:51:42,983 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:42,985 copying build/lib/rna_tools/tools/rna_alignment/test_data/RF02221.stockholm.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:42,987 copying build/lib/rna_tools/tools/rna_alignment/test_data/4lvv_cmalign.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:42,989 copying build/lib/rna_tools/tools/rna_alignment/test_data/aln1_out.fasta -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:42,991 copying build/lib/rna_tools/tools/rna_alignment/test_data/RF01831.stockholm.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:42,993 copying build/lib/rna_tools/tools/rna_alignment/test_data/gmp.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:42,995 copying build/lib/rna_tools/tools/rna_alignment/test_data/aln1.fasta -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:42,997 copying build/lib/rna_tools/tools/rna_alignment/test_data/RF00167.stockholm.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:42,999 copying build/lib/rna_tools/tools/rna_alignment/test_data/IA1.gissd.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:43,003 copying build/lib/rna_tools/tools/rna_alignment/test_data/4lvv_RF01831_cmalign.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:43,004 copying build/lib/rna_tools/tools/rna_alignment/test_data/4lvv.seq -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:43,006 copying build/lib/rna_tools/tools/rna_alignment/test_data/af27.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:43,008 copying build/lib/rna_tools/tools/rna_alignment/test_data/IE2.gissd.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:43,011 copying build/lib/rna_tools/tools/rna_alignment/test_data/RF01831.cm -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:43,014 copying build/lib/rna_tools/tools/rna_alignment/test_data/RF00379.cm -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:43,018 copying build/lib/rna_tools/tools/rna_alignment/test_data/RF01831.short.stk -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:43,020 copying build/lib/rna_tools/tools/rna_alignment/test_data/xrrna_rfam.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:43,023 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data/foldability 2026-02-14T09:51:43,024 copying build/lib/rna_tools/tools/rna_alignment/test_data/foldability/rp17_foldability.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data/foldability 2026-02-14T09:51:43,034 copying build/lib/rna_tools/tools/rna_alignment/test_data/ade.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:43,036 copying build/lib/rna_tools/tools/rna_alignment/test_data/rfam_hit.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:43,038 copying build/lib/rna_tools/tools/rna_alignment/test_data/target.seq -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:43,041 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data/rchie_test_files 2026-02-14T09:51:43,043 copying build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files/connect.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data/rchie_test_files 2026-02-14T09:51:43,045 copying build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files/fasta.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data/rchie_test_files 2026-02-14T09:51:43,047 copying build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files/vienna.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data/rchie_test_files 2026-02-14T09:51:43,049 copying build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files/helix.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data/rchie_test_files 2026-02-14T09:51:43,051 copying build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files/bpseq.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data/rchie_test_files 2026-02-14T09:51:43,054 copying build/lib/rna_tools/tools/rna_alignment/test_data/fasta_out.fasta -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:43,056 copying build/lib/rna_tools/tools/rna_alignment/test_data/ade_gapped.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:43,058 copying build/lib/rna_tools/tools/rna_alignment/test_data/xx.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:43,060 copying build/lib/rna_tools/tools/rna_alignment/test_data/gmp.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:43,063 copying build/lib/rna_tools/tools/rna_alignment/test_data/RF00379.stockholm.stk -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:43,066 copying build/lib/rna_tools/tools/rna_alignment/test_data/u6_isl_rfam.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:43,072 copying build/lib/rna_tools/tools/rna_alignment/test_data/RF00002.stockholm.stk -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:43,075 copying build/lib/rna_tools/tools/rna_alignment/test_data/RF00001.blocked.stk -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:43,085 copying build/lib/rna_tools/tools/rna_alignment/test_data/fasta.fasta -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-02-14T09:51:43,087 copying build/lib/rna_tools/tools/rna_alignment/test_rna_alignment.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-02-14T09:51:43,091 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/pngs 2026-02-14T09:51:43,092 copying build/lib/rna_tools/tools/rna_alignment/pngs/rchie.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/pngs 2026-02-14T09:51:43,097 copying build/lib/rna_tools/tools/rna_alignment/pngs/rscape.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/pngs 2026-02-14T09:51:43,101 copying build/lib/rna_tools/tools/rna_alignment/test.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-02-14T09:51:43,104 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils 2026-02-14T09:51:43,105 copying build/lib/rna_tools/tools/rna_alignment/utils/mfa-get-seq-for-species.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils 2026-02-14T09:51:43,107 copying build/lib/rna_tools/tools/rna_alignment/utils/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils 2026-02-14T09:51:43,110 copying build/lib/rna_tools/tools/rna_alignment/utils/rna_alignment_r2r.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils 2026-02-14T09:51:43,112 copying build/lib/rna_tools/tools/rna_alignment/utils/rna_align_strip_stk.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils 2026-02-14T09:51:43,115 copying build/lib/rna_tools/tools/rna_alignment/utils/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils 2026-02-14T09:51:43,118 copying build/lib/rna_tools/tools/rna_alignment/utils/R2R.cpp -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils 2026-02-14T09:51:43,121 copying build/lib/rna_tools/tools/rna_alignment/utils/R2R.cpp.readme.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils 2026-02-14T09:51:43,124 copying build/lib/rna_tools/tools/rna_alignment/utils/rna_alignment_process_id.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils 2026-02-14T09:51:43,127 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils/test_data 2026-02-14T09:51:43,129 copying build/lib/rna_tools/tools/rna_alignment/utils/test_data/pustela.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils/test_data 2026-02-14T09:51:43,131 copying build/lib/rna_tools/tools/rna_alignment/utils/test_data/mutant_list.stk -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils/test_data 2026-02-14T09:51:43,134 copying build/lib/rna_tools/tools/rna_alignment/utils/test_data/mutant_list.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils/test_data 2026-02-14T09:51:43,136 copying build/lib/rna_tools/tools/rna_alignment/utils/test_data/u5_rfam_u5only.stk -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils/test_data 2026-02-14T09:51:43,139 copying build/lib/rna_tools/tools/rna_alignment/utils/test_data/mustela.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils/test_data 2026-02-14T09:51:43,141 copying build/lib/rna_tools/tools/rna_alignment/utils/test_data/RF00026_demo.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils/test_data 2026-02-14T09:51:43,143 copying build/lib/rna_tools/tools/rna_alignment/utils/test_data/mustela_format.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils/test_data 2026-02-14T09:51:43,145 copying build/lib/rna_tools/tools/rna_alignment/utils/rna_alignment_merge_by_species.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils 2026-02-14T09:51:43,148 copying build/lib/rna_tools/tools/rna_alignment/utils/rna_alignment_get_species.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils 2026-02-14T09:51:43,151 copying build/lib/rna_tools/tools/rna_alignment/utils/rna_alignment_calc_energy.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils 2026-02-14T09:51:43,154 copying build/lib/rna_tools/tools/rna_alignment/utils/rna_alignment_sto_remove_uniq_ids.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils 2026-02-14T09:51:43,156 copying build/lib/rna_tools/tools/rna_alignment/rna_alignment_IA1.ipynb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-02-14T09:51:43,169 copying build/lib/rna_tools/tools/rna_alignment/random_assignment_of_nucleotides.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-02-14T09:51:43,172 copying build/lib/rna_tools/tools/rna_alignment/rna_align_seq_to_alignment.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-02-14T09:51:43,174 copying build/lib/rna_tools/tools/rna_alignment/rna_align_find_seq_in_alignment.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-02-14T09:51:43,177 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3 2026-02-14T09:51:43,178 copying build/lib/rna_tools/tools/mini_moderna3/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3 2026-02-14T09:51:43,181 copying build/lib/rna_tools/tools/mini_moderna3/.coveragerc -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3 2026-02-14T09:51:43,183 copying build/lib/rna_tools/tools/mini_moderna3/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3 2026-02-14T09:51:43,185 copying build/lib/rna_tools/tools/mini_moderna3/AUTHORS.rst -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3 2026-02-14T09:51:43,188 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-02-14T09:51:43,190 copying build/lib/rna_tools/tools/mini_moderna3/moderna/Renumerator.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-02-14T09:51:43,193 copying build/lib/rna_tools/tools/mini_moderna3/moderna/_version.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-02-14T09:51:43,195 copying build/lib/rna_tools/tools/mini_moderna3/moderna/Helix.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-02-14T09:51:43,198 copying build/lib/rna_tools/tools/mini_moderna3/moderna/FragmentInsertion.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-02-14T09:51:43,200 copying build/lib/rna_tools/tools/mini_moderna3/moderna/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-02-14T09:51:43,203 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/modifications 2026-02-14T09:51:43,204 copying build/lib/rna_tools/tools/mini_moderna3/moderna/modifications/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/modifications 2026-02-14T09:51:43,207 copying build/lib/rna_tools/tools/mini_moderna3/moderna/modifications/ModificationAdder.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/modifications 2026-02-14T09:51:43,209 copying build/lib/rna_tools/tools/mini_moderna3/moderna/modifications/BaseExchanger.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/modifications 2026-02-14T09:51:43,212 copying build/lib/rna_tools/tools/mini_moderna3/moderna/modifications/ModificationRemover.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/modifications 2026-02-14T09:51:43,215 copying build/lib/rna_tools/tools/mini_moderna3/moderna/modifications/ModifyResidue.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/modifications 2026-02-14T09:51:43,217 copying build/lib/rna_tools/tools/mini_moderna3/moderna/modifications/ResidueEditor.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/modifications 2026-02-14T09:51:43,220 copying build/lib/rna_tools/tools/mini_moderna3/moderna/Constants.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-02-14T09:51:43,223 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/sequence 2026-02-14T09:51:43,224 copying build/lib/rna_tools/tools/mini_moderna3/moderna/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/sequence 2026-02-14T09:51:43,226 copying build/lib/rna_tools/tools/mini_moderna3/moderna/sequence/commands.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/sequence 2026-02-14T09:51:43,229 copying build/lib/rna_tools/tools/mini_moderna3/moderna/sequence/ModernaAlphabet.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/sequence 2026-02-14T09:51:43,232 copying build/lib/rna_tools/tools/mini_moderna3/moderna/sequence/AlignmentMatcher.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/sequence 2026-02-14T09:51:43,235 copying build/lib/rna_tools/tools/mini_moderna3/moderna/sequence/ModernaSequence.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/sequence 2026-02-14T09:51:43,237 copying build/lib/rna_tools/tools/mini_moderna3/moderna/sequence/RNAAlignment.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/sequence 2026-02-14T09:51:43,240 copying build/lib/rna_tools/tools/mini_moderna3/moderna/PdbConverter.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-02-14T09:51:43,242 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data 2026-02-14T09:51:43,243 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/phosphate_group.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data 2026-02-14T09:51:43,245 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/rnaDB05_list.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data 2026-02-14T09:51:43,247 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/rnaDB05_list_without_tRNA.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data 2026-02-14T09:51:43,249 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modifications -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data 2026-02-14T09:51:43,251 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/IsostericityMatrices.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data 2026-02-14T09:51:43,254 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_topologies.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data 2026-02-14T09:51:43,256 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/all_atom_names -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data 2026-02-14T09:51:43,259 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/B_DNA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data 2026-02-14T09:51:43,262 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/single_strand.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data 2026-02-14T09:51:43,265 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2026-02-14T09:51:43,266 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases/P_atom.ent -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2026-02-14T09:51:43,268 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases/G.ent -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2026-02-14T09:51:43,270 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases/U.ent -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2026-02-14T09:51:43,272 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases/A.ent -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2026-02-14T09:51:43,274 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases/C.ent -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2026-02-14T09:51:43,276 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/suite_clusters.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data 2026-02-14T09:51:43,280 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,282 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mc.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,284 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_preQ0tRNA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,286 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/1wts_N1C6C5_N6_mm.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,287 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_m1acp3Y.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,289 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mnmc.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,291 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N3C4C5_N4_ac.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,293 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_se.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,295 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_s.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,297 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_mm.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,298 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p_O2p_m.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,300 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_QtRNA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,302 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_N2_m.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,304 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mcm.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,306 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_omcm.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,308 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_ohyW_star.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,310 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_O.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,312 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_galQtRNA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,314 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_manQtRNA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,316 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mhcm.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,318 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_g.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,320 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_oQtRNA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,322 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_k.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,324 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/ribose_C.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,326 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N3C4C5_N4_m.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,327 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N3C4C5_N4_mm.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,329 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mcn.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,331 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_i.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,333 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C5C7C8_arch.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,335 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N1C6_m.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,337 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_i.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,339 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_m.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,341 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mt.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,343 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,345 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_yW.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,347 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_f.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,349 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_om.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,351 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_t.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,352 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_gluQtRNA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,354 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_preQ1tRNA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,356 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N3C4C5_s.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,358 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mhc.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,359 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_io.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,361 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mnm.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,363 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_m.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,365 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C5N7C8_m.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,366 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C6N7C8_m.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,368 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N3C4_m.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,370 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p_O2p_rp.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,372 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_omc.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,374 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_m3Y.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,375 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_ohyW.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,377 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_sm.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,379 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_N2_mm.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,381 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N1C6_m5D.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,383 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_C7.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,385 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N3C4_acp.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,386 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_m_t.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,388 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_mi.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,390 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_ac.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,392 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mn.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,394 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N1C6_D.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,396 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p_O2p_r_P.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,398 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_m.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,400 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_oh.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,401 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mh.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,403 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_hn.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,405 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_o2yW.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,407 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p_O2p.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,409 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_m1Y.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,411 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_Y.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-02-14T09:51:43,413 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_names_table -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data 2026-02-14T09:51:43,415 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/pair_fragment.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data 2026-02-14T09:51:43,417 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/helix.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data 2026-02-14T09:51:43,426 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,427 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,429 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_GA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,431 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_GC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,433 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,435 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/----_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,437 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,439 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSa_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,441 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_GA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,443 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,445 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_UG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,447 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_UC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,449 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_UG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,450 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,452 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,454 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,456 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_GA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,458 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,460 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,462 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,464 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,466 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_UA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,468 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSa_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,470 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,472 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,474 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,476 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,478 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,480 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_UC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,482 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/Rib_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,484 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,486 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,488 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,490 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,492 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,494 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,497 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,499 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,501 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSa_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,503 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,505 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,507 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,509 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWHa_UA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,511 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSa_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,513 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,515 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,517 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,519 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,521 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,523 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,525 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,527 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,529 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,531 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,533 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_UU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,535 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,537 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSa_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,539 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,541 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,543 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,546 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_GC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,548 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,550 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,553 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:43,554 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:43,556 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:43,558 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:43,559 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:43,561 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:43,563 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:43,565 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:43,567 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:43,569 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:43,571 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_UU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:43,573 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:43,575 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:43,577 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:43,579 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:43,581 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:43,583 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:43,585 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:43,587 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:43,589 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_UU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:43,591 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_UU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:43,592 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:43,594 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:43,596 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:43,599 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:43,600 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:43,602 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:43,605 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:43,607 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-02-14T09:51:43,608 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_GC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,610 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,613 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSb_UG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,615 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,617 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,619 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,621 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,623 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,625 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,627 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,629 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,631 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSa_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,633 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,635 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,637 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,639 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,641 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,643 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,645 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,647 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWHa_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,649 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bifa_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,651 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_UG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,653 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_UA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,655 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_GC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,657 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_GC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,659 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,661 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSb_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,663 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,665 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,667 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_GC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,669 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,671 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,673 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_UA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,675 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,677 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_GC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,679 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_UA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,680 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWHa_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,682 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,684 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,686 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWSa_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,688 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,690 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,692 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_UG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,693 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,695 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,697 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,700 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,702 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,704 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,706 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWHa_UA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,708 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_UG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,710 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,712 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_UU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,714 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,716 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,718 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSa_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,720 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,722 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,724 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,726 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHb_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,728 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,730 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_GC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,732 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,734 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,736 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,738 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,740 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,743 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,745 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,747 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,749 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_UC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,751 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSb_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,753 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,756 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,758 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_UA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,759 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,761 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/Rib_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,763 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,765 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,767 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,769 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,771 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,773 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSa_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,775 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,777 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,779 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,781 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,783 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,785 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_UG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,787 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,789 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_GA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,791 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,793 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,795 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_UG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,797 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,799 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,801 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,803 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,805 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,807 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,809 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_UA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,811 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,813 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,815 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,817 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,819 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_UC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,821 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_GA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,824 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSa_UG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,825 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,828 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,830 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSb_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,832 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,834 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,836 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bifa_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,838 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWHa_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,840 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,842 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,845 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,847 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_UU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,849 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,851 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,853 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,855 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,857 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,859 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,861 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,863 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,865 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,867 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHb_UA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,869 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,871 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_GA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,873 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_GA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,875 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,877 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,879 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,881 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,883 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSa_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,885 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,887 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_GA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,888 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,890 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,892 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWHa_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-02-14T09:51:43,894 copying build/lib/rna_tools/tools/mini_moderna3/moderna/ModelingRecipe.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-02-14T09:51:43,897 copying build/lib/rna_tools/tools/mini_moderna3/moderna/ModernaStructure.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-02-14T09:51:43,899 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/fragment_library 2026-02-14T09:51:43,900 copying build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/fragment_library 2026-02-14T09:51:43,902 copying build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library/SearchLIR.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/fragment_library 2026-02-14T09:51:43,905 copying build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library/LIRdb.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/fragment_library 2026-02-14T09:51:43,907 copying build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library/StructureLibrary.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/fragment_library 2026-02-14T09:51:43,910 copying build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library/LIR.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/fragment_library 2026-02-14T09:51:43,912 copying build/lib/rna_tools/tools/mini_moderna3/moderna/RNAResidue.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-02-14T09:51:43,915 copying build/lib/rna_tools/tools/mini_moderna3/moderna/Renumerator_new.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-02-14T09:51:43,917 copying build/lib/rna_tools/tools/mini_moderna3/moderna/ModernaFragment.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-02-14T09:51:43,919 copying build/lib/rna_tools/tools/mini_moderna3/moderna/Template.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-02-14T09:51:43,921 copying build/lib/rna_tools/tools/mini_moderna3/moderna/moderna.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-02-14T09:51:43,924 copying build/lib/rna_tools/tools/mini_moderna3/moderna/commands.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-02-14T09:51:43,927 copying build/lib/rna_tools/tools/mini_moderna3/moderna/CheckPdb.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-02-14T09:51:43,929 copying build/lib/rna_tools/tools/mini_moderna3/moderna/ModernaSuperimposer.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-02-14T09:51:43,932 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/isosteric 2026-02-14T09:51:43,933 copying build/lib/rna_tools/tools/mini_moderna3/moderna/isosteric/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/isosteric 2026-02-14T09:51:43,934 copying build/lib/rna_tools/tools/mini_moderna3/moderna/isosteric/IsostericityMatrices.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/isosteric 2026-02-14T09:51:43,936 copying build/lib/rna_tools/tools/mini_moderna3/moderna/isosteric/Isostericity.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/isosteric 2026-02-14T09:51:43,938 copying build/lib/rna_tools/tools/mini_moderna3/moderna/isosteric/IsostericModelling.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/isosteric 2026-02-14T09:51:43,941 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/util 2026-02-14T09:51:43,942 copying build/lib/rna_tools/tools/mini_moderna3/moderna/util/validators.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/util 2026-02-14T09:51:43,945 copying build/lib/rna_tools/tools/mini_moderna3/moderna/util/decorators.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/util 2026-02-14T09:51:43,947 copying build/lib/rna_tools/tools/mini_moderna3/moderna/util/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/util 2026-02-14T09:51:43,949 copying build/lib/rna_tools/tools/mini_moderna3/moderna/util/LogFile.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/util 2026-02-14T09:51:43,951 copying build/lib/rna_tools/tools/mini_moderna3/moderna/util/Errors.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/util 2026-02-14T09:51:43,954 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/builder 2026-02-14T09:51:43,956 copying build/lib/rna_tools/tools/mini_moderna3/moderna/builder/ChiRotator.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/builder 2026-02-14T09:51:43,958 copying build/lib/rna_tools/tools/mini_moderna3/moderna/builder/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/builder 2026-02-14T09:51:43,960 copying build/lib/rna_tools/tools/mini_moderna3/moderna/builder/Constants.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/builder 2026-02-14T09:51:43,962 copying build/lib/rna_tools/tools/mini_moderna3/moderna/builder/BackboneBuilder.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/builder 2026-02-14T09:51:43,965 copying build/lib/rna_tools/tools/mini_moderna3/moderna/builder/PhosphateBuilder.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/builder 2026-02-14T09:51:43,968 copying build/lib/rna_tools/tools/mini_moderna3/moderna/builder/CoordBuilder.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/builder 2026-02-14T09:51:43,971 copying build/lib/rna_tools/tools/mini_moderna3/moderna/builder/FCCDLoopCloser.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/builder 2026-02-14T09:51:43,973 copying build/lib/rna_tools/tools/mini_moderna3/moderna/RNAChain.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-02-14T09:51:43,977 copying build/lib/rna_tools/tools/mini_moderna3/moderna/RNAModel.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-02-14T09:51:43,980 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-02-14T09:51:43,982 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/StackingCalculator.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-02-14T09:51:43,985 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/HBondCalculator.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-02-14T09:51:43,988 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/MolecularGraph.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-02-14T09:51:43,991 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-02-14T09:51:43,993 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/Constants.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-02-14T09:51:43,996 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/PuckerCalculator.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-02-14T09:51:43,998 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/RNASuites.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-02-14T09:51:44,001 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-02-14T09:51:44,002 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/suite_clusters.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-02-14T09:51:44,005 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_suitename.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-02-14T09:51:44,008 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_SuiteCalculator.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-02-14T09:51:44,011 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/dihedral_bins.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-02-14T09:51:44,013 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/suite.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-02-14T09:51:44,016 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/SuiteCalculator.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-02-14T09:51:44,020 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/suite2.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-02-14T09:51:44,023 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data 2026-02-14T09:51:44,024 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data/1JZC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data 2026-02-14T09:51:44,028 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data/1WTS.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data 2026-02-14T09:51:44,031 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data/arhb90H.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data 2026-02-14T09:51:44,035 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data/ah0001Ha.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data 2026-02-14T09:51:44,039 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/suitename.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-02-14T09:51:44,042 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_suite.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-02-14T09:51:44,045 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/MolParameters.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-02-14T09:51:44,047 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/BasePairCalculator.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-02-14T09:51:44,050 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/MolTopologies.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-02-14T09:51:44,053 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/GeometryAnalyzer.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-02-14T09:51:44,055 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/ClashRecognizer.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-02-14T09:51:44,057 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/ChainConnectivity.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-02-14T09:51:44,059 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/GeometryStatistics.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-02-14T09:51:44,062 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/MolGraphParser.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-02-14T09:51:44,064 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/BaseRecognizer.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-02-14T09:51:44,067 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/GeometryParameters.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-02-14T09:51:44,070 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/examples 2026-02-14T09:51:44,071 copying build/lib/rna_tools/tools/mini_moderna3/moderna/examples/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/examples 2026-02-14T09:51:44,073 copying build/lib/rna_tools/tools/mini_moderna3/moderna/examples/usage_examples.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/examples 2026-02-14T09:51:44,075 copying build/lib/rna_tools/tools/mini_moderna3/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3 2026-02-14T09:51:44,077 copying build/lib/rna_tools/tools/mini_moderna3/.travis.yml -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3 2026-02-14T09:51:44,079 copying build/lib/rna_tools/tools/mini_moderna3/MANIFEST.in -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3 2026-02-14T09:51:44,081 copying build/lib/rna_tools/tools/mini_moderna3/COPYING -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3 2026-02-14T09:51:44,084 copying build/lib/rna_tools/tools/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools 2026-02-14T09:51:44,087 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/sandbox 2026-02-14T09:51:44,088 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/sandbox/rna_compare 2026-02-14T09:51:44,089 copying build/lib/rna_tools/tools/sandbox/rna_compare/rmsds.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/sandbox/rna_compare 2026-02-14T09:51:44,092 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/sandbox/rna_compare/test_data 2026-02-14T09:51:44,093 copying build/lib/rna_tools/tools/sandbox/rna_compare/test_data/1y26_clean.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/sandbox/rna_compare/test_data 2026-02-14T09:51:44,098 copying build/lib/rna_tools/tools/sandbox/rna_compare/test_data/ade_pk_82a6_100low-000006_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/sandbox/rna_compare/test_data 2026-02-14T09:51:44,102 copying build/lib/rna_tools/tools/sandbox/rna_compare/rna_compare.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/sandbox/rna_compare 2026-02-14T09:51:44,104 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rfam 2026-02-14T09:51:44,105 copying build/lib/rna_tools/tools/rna_rfam/list.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rfam 2026-02-14T09:51:44,109 copying build/lib/rna_tools/tools/rna_rfam/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rfam 2026-02-14T09:51:44,111 copying build/lib/rna_tools/tools/rna_rfam/rna_download_rfam.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rfam 2026-02-14T09:51:44,114 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pdbs_measure_atom_dists 2026-02-14T09:51:44,115 copying build/lib/rna_tools/tools/pdbs_measure_atom_dists/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdbs_measure_atom_dists 2026-02-14T09:51:44,116 copying build/lib/rna_tools/tools/pdbs_measure_atom_dists/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdbs_measure_atom_dists 2026-02-14T09:51:44,118 copying build/lib/rna_tools/tools/pdbs_measure_atom_dists/pdbs_measure_atom_dists.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdbs_measure_atom_dists 2026-02-14T09:51:44,121 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pdbs_measure_atom_dists/test_data 2026-02-14T09:51:44,122 copying build/lib/rna_tools/tools/pdbs_measure_atom_dists/test_data/obj01.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdbs_measure_atom_dists/test_data 2026-02-14T09:51:44,125 copying build/lib/rna_tools/tools/pdbs_measure_atom_dists/test_data/ALN_OBJ1_OBJ2.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdbs_measure_atom_dists/test_data 2026-02-14T09:51:44,127 copying build/lib/rna_tools/tools/pdbs_measure_atom_dists/test_data/obj02.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdbs_measure_atom_dists/test_data 2026-02-14T09:51:44,131 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender 2026-02-14T09:51:44,131 copying build/lib/rna_tools/tools/rnapuzzle_sender/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender 2026-02-14T09:51:44,134 copying build/lib/rna_tools/tools/rnapuzzle_sender/rnapuzzle_sender.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender 2026-02-14T09:51:44,136 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/files 2026-02-14T09:51:44,137 copying build/lib/rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank4.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/files 2026-02-14T09:51:44,142 copying build/lib/rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank7.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/files 2026-02-14T09:51:44,149 copying build/lib/rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank9.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/files 2026-02-14T09:51:44,155 copying build/lib/rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank2.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/files 2026-02-14T09:51:44,162 copying build/lib/rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank6.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/files 2026-02-14T09:51:44,168 copying build/lib/rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank1.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/files 2026-02-14T09:51:44,175 copying build/lib/rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank10.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/files 2026-02-14T09:51:44,181 copying build/lib/rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank3.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/files 2026-02-14T09:51:44,187 copying build/lib/rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank8.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/files 2026-02-14T09:51:44,191 copying build/lib/rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank5.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/files 2026-02-14T09:51:44,196 copying build/lib/rna_tools/tools/rnapuzzle_sender/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender 2026-02-14T09:51:44,198 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/test_of_email_content 2026-02-14T09:51:44,199 copying build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content/test3.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/test_of_email_content 2026-02-14T09:51:44,206 copying build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content/model1.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/test_of_email_content 2026-02-14T09:51:44,212 copying build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content/test.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/test_of_email_content 2026-02-14T09:51:44,250 copying build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content/test.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/test_of_email_content 2026-02-14T09:51:44,293 copying build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content/test02.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/test_of_email_content 2026-02-14T09:51:44,348 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_merge_structure_with_fragments 2026-02-14T09:51:44,349 copying build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments/rna_pdb_merge_structure_with_fragments.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_merge_structure_with_fragments 2026-02-14T09:51:44,351 copying build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_merge_structure_with_fragments 2026-02-14T09:51:44,353 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data 2026-02-14T09:51:44,354 copying build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data/1xjr_root.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data 2026-02-14T09:51:44,357 copying build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data/rna_sq_renumber.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data 2026-02-14T09:51:44,361 copying build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data/1xjr_simrna_nstep_1.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data 2026-02-14T09:51:44,364 copying build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_merge_structure_with_fragments 2026-02-14T09:51:44,366 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/misc 2026-02-14T09:51:44,367 copying build/lib/rna_tools/tools/misc/rna_test_cuda.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc 2026-02-14T09:51:44,370 copying build/lib/rna_tools/tools/misc/translate.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc 2026-02-14T09:51:44,372 copying build/lib/rna_tools/tools/misc/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc 2026-02-14T09:51:44,373 copying build/lib/rna_tools/tools/misc/rna_dict2fasta.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc 2026-02-14T09:51:44,375 copying build/lib/rna_tools/tools/misc/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc 2026-02-14T09:51:44,377 copying build/lib/rna_tools/tools/misc/rna_tools_demo.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc 2026-02-14T09:51:44,379 copying build/lib/rna_tools/tools/misc/rna_tools_which.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc 2026-02-14T09:51:44,381 copying build/lib/rna_tools/tools/misc/rna_remote_run.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc 2026-02-14T09:51:44,383 copying build/lib/rna_tools/tools/misc/rna_ok -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc 2026-02-14T09:51:44,385 copying build/lib/rna_tools/tools/misc/rna_topdb.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc 2026-02-14T09:51:44,387 copying build/lib/rna_tools/tools/misc/reverse.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc 2026-02-14T09:51:44,388 copying build/lib/rna_tools/tools/misc/rna_add_chain.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc 2026-02-14T09:51:44,390 copying build/lib/rna_tools/tools/misc/rna_ok_mail.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc 2026-02-14T09:51:44,392 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv 2026-02-14T09:51:44,393 copying build/lib/rna_tools/tools/pymol_color_by_conserv/conserv_to_csv.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv 2026-02-14T09:51:44,395 copying build/lib/rna_tools/tools/pymol_color_by_conserv/pymol_color_by_conserv.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv 2026-02-14T09:51:44,398 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv/data 2026-02-14T09:51:44,399 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv/data/cwc15 2026-02-14T09:51:44,400 copying build/lib/rna_tools/tools/pymol_color_by_conserv/data/cwc15/cwc15_consensus.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv/data/cwc15 2026-02-14T09:51:44,402 copying build/lib/rna_tools/tools/pymol_color_by_conserv/data/cwc15/psiblast_8183496.aln -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv/data/cwc15 2026-02-14T09:51:44,405 copying build/lib/rna_tools/tools/pymol_color_by_conserv/data/cwc15/cwc15.pml -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv/data/cwc15 2026-02-14T09:51:44,407 copying build/lib/rna_tools/tools/pymol_color_by_conserv/data/cwc15/cwc15_conserv.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv/data/cwc15 2026-02-14T09:51:44,409 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv/docs 2026-02-14T09:51:44,410 copying build/lib/rna_tools/tools/pymol_color_by_conserv/docs/cwc15.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv/docs 2026-02-14T09:51:44,454 copying build/lib/rna_tools/tools/pymol_color_by_conserv/docs/consensus-file.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv/docs 2026-02-14T09:51:44,456 copying build/lib/rna_tools/tools/pymol_color_by_conserv/docs/jalview.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv/docs 2026-02-14T09:51:44,464 copying build/lib/rna_tools/tools/pymol_color_by_conserv/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv 2026-02-14T09:51:44,466 copying build/lib/rna_tools/tools/pymol_color_by_conserv/readme.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv 2026-02-14T09:51:44,469 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_edit_occupancy_bfactor 2026-02-14T09:51:44,470 copying build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_edit_occupancy_bfactor 2026-02-14T09:51:44,472 copying build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/rna_pdb_edit_occupancy_bfactor.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_edit_occupancy_bfactor 2026-02-14T09:51:44,474 copying build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_edit_occupancy_bfactor 2026-02-14T09:51:44,476 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data 2026-02-14T09:51:44,477 copying build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data/3w3s_homologymodel_out.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data 2026-02-14T09:51:44,483 copying build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data/3w3s_homologymodel_select_atoms_out.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data 2026-02-14T09:51:44,488 copying build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data/3w3s_homologymodel.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data 2026-02-14T09:51:44,492 copying build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_edit_occupancy_bfactor 2026-02-14T09:51:44,494 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/ClashCalc 2026-02-14T09:51:44,495 copying build/lib/rna_tools/tools/ClashCalc/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/ClashCalc 2026-02-14T09:51:44,497 copying build/lib/rna_tools/tools/ClashCalc/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/ClashCalc 2026-02-14T09:51:44,499 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/ClashCalc/test_data 2026-02-14T09:51:44,500 copying build/lib/rna_tools/tools/ClashCalc/test_data/no_clash.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/ClashCalc/test_data 2026-02-14T09:51:44,517 copying build/lib/rna_tools/tools/ClashCalc/test_data/prot-na_2392.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/ClashCalc/test_data 2026-02-14T09:51:44,525 copying build/lib/rna_tools/tools/ClashCalc/test_data/super_clash.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/ClashCalc/test_data 2026-02-14T09:51:44,535 copying build/lib/rna_tools/tools/ClashCalc/ClashCalc.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/ClashCalc 2026-02-14T09:51:44,537 copying build/lib/rna_tools/tools/ClashCalc/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/ClashCalc 2026-02-14T09:51:44,540 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_x3dna 2026-02-14T09:51:44,541 copying build/lib/rna_tools/tools/rna_x3dna/rna_x3dna.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_x3dna 2026-02-14T09:51:44,543 copying build/lib/rna_tools/tools/rna_x3dna/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_x3dna 2026-02-14T09:51:44,545 copying build/lib/rna_tools/tools/rna_x3dna/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_x3dna 2026-02-14T09:51:44,547 copying build/lib/rna_tools/tools/rna_x3dna/readme.rst -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_x3dna 2026-02-14T09:51:44,549 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_x3dna/test_data 2026-02-14T09:51:44,550 copying build/lib/rna_tools/tools/rna_x3dna/test_data/6TNA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_x3dna/test_data 2026-02-14T09:51:44,556 copying build/lib/rna_tools/tools/rna_x3dna/test_data/1xjr_output.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_x3dna/test_data 2026-02-14T09:51:44,558 copying build/lib/rna_tools/tools/rna_x3dna/test_data/CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_x3dna/test_data 2026-02-14T09:51:44,560 copying build/lib/rna_tools/tools/rna_x3dna/test_data/rp2_bujnicki_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_x3dna/test_data 2026-02-14T09:51:44,565 copying build/lib/rna_tools/tools/rna_x3dna/test_data/1xjr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_x3dna/test_data 2026-02-14T09:51:44,570 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-02-14T09:51:44,571 copying build/lib/rna_tools/tools/webserver-engine/runme_dev.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-02-14T09:51:44,573 copying build/lib/rna_tools/tools/webserver-engine/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-02-14T09:51:44,576 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/web 2026-02-14T09:51:44,577 copying build/lib/rna_tools/tools/webserver-engine/web/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/web 2026-02-14T09:51:44,579 copying build/lib/rna_tools/tools/webserver-engine/web/wsgi.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/web 2026-02-14T09:51:44,580 copying build/lib/rna_tools/tools/webserver-engine/web/settings.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/web 2026-02-14T09:51:44,583 copying build/lib/rna_tools/tools/webserver-engine/web/urls.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/web 2026-02-14T09:51:44,585 copying build/lib/rna_tools/tools/webserver-engine/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-02-14T09:51:44,586 copying build/lib/rna_tools/tools/webserver-engine/sendmail.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-02-14T09:51:44,588 copying build/lib/rna_tools/tools/webserver-engine/manage.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-02-14T09:51:44,590 copying build/lib/rna_tools/tools/webserver-engine/notes.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-02-14T09:51:44,592 copying build/lib/rna_tools/tools/webserver-engine/wsgi.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-02-14T09:51:44,594 copying build/lib/rna_tools/tools/webserver-engine/install.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-02-14T09:51:44,596 copying build/lib/rna_tools/tools/webserver-engine/cleanup.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-02-14T09:51:44,598 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/django_extensions 2026-02-14T09:51:44,600 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/django_extensions/css 2026-02-14T09:51:44,601 copying build/lib/rna_tools/tools/webserver-engine/django_extensions/css/jquery.autocomplete.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/django_extensions/css 2026-02-14T09:51:44,603 copying build/lib/rna_tools/tools/webserver-engine/django_extensions/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/django_extensions 2026-02-14T09:51:44,605 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/django_extensions/js 2026-02-14T09:51:44,606 copying build/lib/rna_tools/tools/webserver-engine/django_extensions/js/jquery.autocomplete.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/django_extensions/js 2026-02-14T09:51:44,609 copying build/lib/rna_tools/tools/webserver-engine/django_extensions/js/jquery.ajaxQueue.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/django_extensions/js 2026-02-14T09:51:44,611 copying build/lib/rna_tools/tools/webserver-engine/django_extensions/js/jquery.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/django_extensions/js 2026-02-14T09:51:44,615 copying build/lib/rna_tools/tools/webserver-engine/django_extensions/js/jquery.bgiframe.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/django_extensions/js 2026-02-14T09:51:44,618 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/django_extensions/img 2026-02-14T09:51:44,619 copying build/lib/rna_tools/tools/webserver-engine/django_extensions/img/indicator.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/django_extensions/img 2026-02-14T09:51:44,621 copying build/lib/rna_tools/tools/webserver-engine/ac -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-02-14T09:51:44,623 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/docs 2026-02-14T09:51:44,624 copying build/lib/rna_tools/tools/webserver-engine/docs/admin.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/docs 2026-02-14T09:51:44,644 copying build/lib/rna_tools/tools/webserver-engine/docs/demo.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/docs 2026-02-14T09:51:44,662 copying build/lib/rna_tools/tools/webserver-engine/checker.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-02-14T09:51:44,664 copying build/lib/rna_tools/tools/webserver-engine/ddev.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-02-14T09:51:44,666 copying build/lib/rna_tools/tools/webserver-engine/daemon.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-02-14T09:51:44,668 copying build/lib/rna_tools/tools/webserver-engine/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-02-14T09:51:44,670 copying build/lib/rna_tools/tools/webserver-engine/checker.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-02-14T09:51:44,673 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app 2026-02-14T09:51:44,674 copying build/lib/rna_tools/tools/webserver-engine/app/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app 2026-02-14T09:51:44,676 copying build/lib/rna_tools/tools/webserver-engine/app/models.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app 2026-02-14T09:51:44,678 copying build/lib/rna_tools/tools/webserver-engine/app/admin.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app 2026-02-14T09:51:44,680 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static 2026-02-14T09:51:44,682 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app 2026-02-14T09:51:44,683 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload 2026-02-14T09:51:44,685 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload/bootstrap-fileupload.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload 2026-02-14T09:51:44,687 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload/bootstrap-fileupload.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload 2026-02-14T09:51:44,689 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload/bootstrap-fileupload.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload 2026-02-14T09:51:44,691 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload/bootstrap-fileupload.min.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload 2026-02-14T09:51:44,694 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/help 2026-02-14T09:51:44,695 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/help/submit_seq_w_ss_restraints.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/help 2026-02-14T09:51:44,698 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/help/1evv-ss-w11rst2_A.rest -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/help 2026-02-14T09:51:44,701 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap 2026-02-14T09:51:44,702 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css 2026-02-14T09:51:44,703 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap-responsive.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css 2026-02-14T09:51:44,706 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css 2026-02-14T09:51:44,710 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap-responsive.min.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css 2026-02-14T09:51:44,713 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css 2026-02-14T09:51:44,718 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap/js 2026-02-14T09:51:44,719 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/js/jquery.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap/js 2026-02-14T09:51:44,723 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/js/bootstrap.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap/js 2026-02-14T09:51:44,726 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/js/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap/js 2026-02-14T09:51:44,729 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap/img 2026-02-14T09:51:44,730 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/img/glyphicons-halflings.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap/img 2026-02-14T09:51:44,733 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/img/glyphicons-halflings-white.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap/img 2026-02-14T09:51:44,735 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/jsmol.zip -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app 2026-02-14T09:51:44,840 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47 2026-02-14T09:51:44,842 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css 2026-02-14T09:51:44,843 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/demo.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css 2026-02-14T09:51:44,846 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme 2026-02-14T09:51:44,847 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/jquery.ui.1.10.0.ie.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme 2026-02-14T09:51:44,849 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/jquery-ui-1.10.0.custom.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme 2026-02-14T09:51:44,853 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/jquery.ui.1.9.2.ie.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme 2026-02-14T09:51:44,855 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/jquery-ui-1.9.2.custom.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme 2026-02-14T09:51:44,860 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-02-14T09:51:44,861 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_55_fbf9ee_1x400.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-02-14T09:51:44,863 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_75_ffffff_1x400.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-02-14T09:51:44,865 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_222222_256x240.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-02-14T09:51:44,867 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_75_e6e6e6_1x400.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-02-14T09:51:44,869 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_888888_256x240.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-02-14T09:51:44,872 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_75_dadada_1x400.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-02-14T09:51:44,874 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_cd0a0a_256x240.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-02-14T09:51:44,876 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_inset-soft_95_fef1ec_1x100.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-02-14T09:51:44,879 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_65_ffffff_1x400.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-02-14T09:51:44,881 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_f6cf3b_256x240.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-02-14T09:51:44,884 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_flat_0_aaaaaa_40x100.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-02-14T09:51:44,886 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_454545_256x240.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-02-14T09:51:44,889 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_2e83ff_256x240.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-02-14T09:51:44,891 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_highlight-soft_75_cccccc_1x100.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-02-14T09:51:44,894 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/old_index.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47 2026-02-14T09:51:44,898 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js 2026-02-14T09:51:44,900 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js/demo.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js 2026-02-14T09:51:44,902 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js/jquery-ui-1.9.2.custom.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js 2026-02-14T09:51:44,912 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js/jquery-1.8.3.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js 2026-02-14T09:51:44,918 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/extra.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47 2026-02-14T09:51:44,921 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/index.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47 2026-02-14T09:51:44,925 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party 2026-02-14T09:51:44,927 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo 2026-02-14T09:51:44,929 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo/jquery.wijmo-open.1.5.0.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo 2026-02-14T09:51:44,933 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo/jquery.mousewheel.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo 2026-02-14T09:51:44,935 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo/jquery.bgiframe-2.1.3-pre.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo 2026-02-14T09:51:44,938 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo/jquery.wijmo-open.1.5.0.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo 2026-02-14T09:51:44,948 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput 2026-02-14T09:51:44,950 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/css 2026-02-14T09:51:44,952 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/css/enhanced.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/css 2026-02-14T09:51:44,955 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js 2026-02-14T09:51:44,956 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js/enhance.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js 2026-02-14T09:51:44,959 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js/fileinput.jquery.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js 2026-02-14T09:51:44,962 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images 2026-02-14T09:51:44,963 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-image.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images 2026-02-14T09:51:44,966 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-generic.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images 2026-02-14T09:51:44,968 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-zip.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images 2026-02-14T09:51:44,970 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-media.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images 2026-02-14T09:51:44,973 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker 2026-02-14T09:51:44,975 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/css 2026-02-14T09:51:44,977 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/css/ui.daterangepicker.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/css 2026-02-14T09:51:44,980 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js 2026-02-14T09:51:44,981 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js/date.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js 2026-02-14T09:51:44,985 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js/daterangepicker.jQuery.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js 2026-02-14T09:51:44,989 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js/daterangepicker.jQuery.compressed.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js 2026-02-14T09:51:44,991 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/index.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker 2026-02-14T09:51:44,994 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets 2026-02-14T09:51:44,996 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css 2026-02-14T09:51:44,998 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2026-02-14T09:51:45,000 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font/fontawesome-webfont.ttf -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2026-02-14T09:51:45,004 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font/fontawesome-webfont.svg -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2026-02-14T09:51:45,011 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font/fontawesome-webfont.eot -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2026-02-14T09:51:45,015 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font/fontawesome-webfont.woff -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2026-02-14T09:51:45,018 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font/FontAwesome.otf -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2026-02-14T09:51:45,022 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font-awesome.min.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css 2026-02-14T09:51:45,025 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css 2026-02-14T09:51:45,029 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font-awesome-ie7.min.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css 2026-02-14T09:51:45,032 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/docs.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css 2026-02-14T09:51:45,035 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2026-02-14T09:51:45,036 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/demo.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2026-02-14T09:51:45,039 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/jquery-1.9.0.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2026-02-14T09:51:45,043 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/docs.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2026-02-14T09:51:45,045 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/google-code-prettify 2026-02-14T09:51:45,046 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/google-code-prettify/prettify.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/google-code-prettify 2026-02-14T09:51:45,048 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/google-code-prettify/prettify.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/google-code-prettify 2026-02-14T09:51:45,051 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2026-02-14T09:51:45,053 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/jquery-ui-1.10.0.custom.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2026-02-14T09:51:45,059 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/jquery-1.8.3.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2026-02-14T09:51:45,064 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2026-02-14T09:51:45,065 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/favicon.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2026-02-14T09:51:45,067 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/apple-touch-icon-114-precomposed.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2026-02-14T09:51:45,070 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/apple-touch-icon-72-precomposed.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2026-02-14T09:51:45,072 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/favicon.ico -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2026-02-14T09:51:45,074 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/apple-touch-icon-144-precomposed.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2026-02-14T09:51:45,077 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/apple-touch-icon-57-precomposed.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2026-02-14T09:51:45,079 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/img 2026-02-14T09:51:45,080 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/img/bs-docs-masthead-pattern.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/img 2026-02-14T09:51:45,083 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47 2026-02-14T09:51:45,086 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:45,086 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/2gdi_s.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:45,089 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/tetraloop.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:45,091 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/2gdi_pred.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:45,093 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Cwc2_Exon_Intron.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:45,100 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/to-replace.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:45,102 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Exon_C.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:45,105 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/5k7c_clean_onechain_renumber_as_puzzle_srr_min.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:45,107 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_CWC2_C.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:45,112 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/21_Adamiak_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:45,116 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/tRNA.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:45,118 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/tetraloop_helix.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:45,120 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Exon_Intron_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:45,125 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/1EHZ.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:45,131 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/2gdi_rnafold.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:45,133 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Intron_C.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:45,136 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/gtp.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:45,138 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/21_ChenHighLig_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:45,142 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/5k7c_clean_onechain_renumber_as_puzzle_srr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:45,146 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/1EHZ.cif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:45,154 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/21_Das_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:45,158 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/1l2x_restraints.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:45,159 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/triple-ACA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:45,162 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/2gdi.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:45,164 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/21_3dRNA_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:45,168 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/1l2x_rna_clust0.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:45,170 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/tRNA_saxs.dat -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:45,172 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/2gdi.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:45,176 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/unmodified_tRNAPhe_restraints.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:45,178 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/missing_op1op2_r43OK.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:45,181 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/pistol_thrs0.50A_clust272-000001_AA_min.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:45,182 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/21_solution_2_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:45,186 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/tetraloop_mdr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:45,188 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/1xjr.cif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:45,193 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/rp21.zip -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:45,196 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/MissingAtomsAdded_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:45,198 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Exon_Intron.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:45,202 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/1xjr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-02-14T09:51:45,206 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/img 2026-02-14T09:51:45,207 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/img/01b.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/img 2026-02-14T09:51:45,211 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/img/diffpdb.jpg -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/img 2026-02-14T09:51:45,217 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/img/02x.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/img 2026-02-14T09:51:45,224 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/img/01.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/img 2026-02-14T09:51:45,229 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/img/01c.jpg -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/img 2026-02-14T09:51:45,233 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/img/03.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/img 2026-02-14T09:51:45,239 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/img/folder.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/img 2026-02-14T09:51:45,241 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/img/qrnas.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/img 2026-02-14T09:51:45,244 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/img/02.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/img 2026-02-14T09:51:45,250 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/img/01.jpg -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/img 2026-02-14T09:51:45,253 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle 2026-02-14T09:51:45,255 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src 2026-02-14T09:51:45,256 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src/bootstrap-filestyle.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src 2026-02-14T09:51:45,258 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src/bootstrap-filestyle.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src 2026-02-14T09:51:45,261 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/LICENSE-MIT -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle 2026-02-14T09:51:45,263 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test 2026-02-14T09:51:45,265 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/css 2026-02-14T09:51:45,266 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/css 2026-02-14T09:51:45,271 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js 2026-02-14T09:51:45,272 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js/aplication.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js 2026-02-14T09:51:45,273 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js 2026-02-14T09:51:45,276 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/upload.php -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test 2026-02-14T09:51:45,278 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/index.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test 2026-02-14T09:51:45,281 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img 2026-02-14T09:51:45,282 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img/glyphicons-halflings.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img 2026-02-14T09:51:45,285 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img/glyphicons-halflings-white.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img 2026-02-14T09:51:45,288 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/upload 2026-02-14T09:51:45,289 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/upload/.folder -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/upload 2026-02-14T09:51:45,291 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle 2026-02-14T09:51:45,293 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-acknowledgeinput.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app 2026-02-14T09:51:45,296 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/dropzone 2026-02-14T09:51:45,297 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/dropzone/dropzone.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/dropzone 2026-02-14T09:51:45,389 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/dropzone/dropzone.min.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/dropzone 2026-02-14T09:51:45,400 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/rto.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app 2026-02-14T09:51:45,414 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/rto.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app 2026-02-14T09:51:45,422 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:45,423 copying build/lib/rna_tools/tools/webserver-engine/app/templates/home.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:45,426 copying build/lib/rna_tools/tools/webserver-engine/app/templates/about.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:45,428 copying build/lib/rna_tools/tools/webserver-engine/app/templates/help.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:45,433 copying build/lib/rna_tools/tools/webserver-engine/app/templates/swap.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:45,435 copying build/lib/rna_tools/tools/webserver-engine/app/templates/errors.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:45,437 copying build/lib/rna_tools/tools/webserver-engine/app/templates/rpl.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:45,439 copying build/lib/rna_tools/tools/webserver-engine/app/templates/contact.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:45,441 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates/archive 2026-02-14T09:51:45,442 copying build/lib/rna_tools/tools/webserver-engine/app/templates/archive/submit.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates/archive 2026-02-14T09:51:45,444 copying build/lib/rna_tools/tools/webserver-engine/app/templates/archive/sequence-search.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates/archive 2026-02-14T09:51:45,446 copying build/lib/rna_tools/tools/webserver-engine/app/templates/archive/result.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates/archive 2026-02-14T09:51:45,448 copying build/lib/rna_tools/tools/webserver-engine/app/templates/archive/secondary-structure.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates/archive 2026-02-14T09:51:45,450 copying build/lib/rna_tools/tools/webserver-engine/app/templates/archive/progress.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates/archive 2026-02-14T09:51:45,452 copying build/lib/rna_tools/tools/webserver-engine/app/templates/mutate.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:45,455 copying build/lib/rna_tools/tools/webserver-engine/app/templates/assess.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:45,457 copying build/lib/rna_tools/tools/webserver-engine/app/templates/rpr.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:45,459 copying build/lib/rna_tools/tools/webserver-engine/app/templates/qrnas.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:45,461 copying build/lib/rna_tools/tools/webserver-engine/app/templates/notes.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:45,463 copying build/lib/rna_tools/tools/webserver-engine/app/templates/tocif.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:45,465 copying build/lib/rna_tools/tools/webserver-engine/app/templates/clarna.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:45,467 copying build/lib/rna_tools/tools/webserver-engine/app/templates/extract.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:45,469 copying build/lib/rna_tools/tools/webserver-engine/app/templates/base.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:45,472 copying build/lib/rna_tools/tools/webserver-engine/app/templates/calc-rmsd.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:45,474 copying build/lib/rna_tools/tools/webserver-engine/app/templates/analysis.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:45,476 copying build/lib/rna_tools/tools/webserver-engine/app/templates/delete.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:45,478 copying build/lib/rna_tools/tools/webserver-engine/app/templates/seq.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:45,480 copying build/lib/rna_tools/tools/webserver-engine/app/templates/h2a.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:45,482 copying build/lib/rna_tools/tools/webserver-engine/app/templates/diffpdb.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:45,484 copying build/lib/rna_tools/tools/webserver-engine/app/templates/cat.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:45,487 copying build/lib/rna_tools/tools/webserver-engine/app/templates/topdb.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:45,488 copying build/lib/rna_tools/tools/webserver-engine/app/templates/notebase.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:45,490 copying build/lib/rna_tools/tools/webserver-engine/app/templates/edit.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:45,493 copying build/lib/rna_tools/tools/webserver-engine/app/templates/dont_exits.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:45,495 copying build/lib/rna_tools/tools/webserver-engine/app/templates/tools.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:45,497 copying build/lib/rna_tools/tools/webserver-engine/app/templates/min.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:45,500 copying build/lib/rna_tools/tools/webserver-engine/app/templates/ss.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:45,502 copying build/lib/rna_tools/tools/webserver-engine/app/templates/mdr.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:45,504 copying build/lib/rna_tools/tools/webserver-engine/app/templates/calc-inf.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-02-14T09:51:45,506 copying build/lib/rna_tools/tools/webserver-engine/app/views.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app 2026-02-14T09:51:45,522 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin 2026-02-14T09:51:45,524 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/css 2026-02-14T09:51:45,525 copying build/lib/rna_tools/tools/webserver-engine/admin/css/rtl.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/css 2026-02-14T09:51:45,529 copying build/lib/rna_tools/tools/webserver-engine/admin/css/widgets.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/css 2026-02-14T09:51:45,537 copying build/lib/rna_tools/tools/webserver-engine/admin/css/forms.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/css 2026-02-14T09:51:45,545 copying build/lib/rna_tools/tools/webserver-engine/admin/css/changelists.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/css 2026-02-14T09:51:45,553 copying build/lib/rna_tools/tools/webserver-engine/admin/css/base.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/css 2026-02-14T09:51:45,562 copying build/lib/rna_tools/tools/webserver-engine/admin/css/dashboard.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/css 2026-02-14T09:51:45,570 copying build/lib/rna_tools/tools/webserver-engine/admin/css/ie.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/css 2026-02-14T09:51:45,579 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-02-14T09:51:45,584 copying build/lib/rna_tools/tools/webserver-engine/admin/js/inlines.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-02-14T09:51:45,600 copying build/lib/rna_tools/tools/webserver-engine/admin/js/jquery.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-02-14T09:51:45,609 copying build/lib/rna_tools/tools/webserver-engine/admin/js/jquery.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-02-14T09:51:45,616 copying build/lib/rna_tools/tools/webserver-engine/admin/js/collapse.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-02-14T09:51:45,619 copying build/lib/rna_tools/tools/webserver-engine/admin/js/LICENSE-JQUERY.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-02-14T09:51:45,621 copying build/lib/rna_tools/tools/webserver-engine/admin/js/calendar.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-02-14T09:51:45,624 copying build/lib/rna_tools/tools/webserver-engine/admin/js/core.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-02-14T09:51:45,627 copying build/lib/rna_tools/tools/webserver-engine/admin/js/inlines.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-02-14T09:51:45,630 copying build/lib/rna_tools/tools/webserver-engine/admin/js/SelectBox.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-02-14T09:51:45,633 copying build/lib/rna_tools/tools/webserver-engine/admin/js/actions.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-02-14T09:51:45,635 copying build/lib/rna_tools/tools/webserver-engine/admin/js/actions.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-02-14T09:51:45,638 copying build/lib/rna_tools/tools/webserver-engine/admin/js/getElementsBySelector.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-02-14T09:51:45,641 copying build/lib/rna_tools/tools/webserver-engine/admin/js/SelectFilter2.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-02-14T09:51:45,644 copying build/lib/rna_tools/tools/webserver-engine/admin/js/prepopulate.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-02-14T09:51:45,647 copying build/lib/rna_tools/tools/webserver-engine/admin/js/timeparse.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-02-14T09:51:45,649 copying build/lib/rna_tools/tools/webserver-engine/admin/js/prepopulate.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-02-14T09:51:45,651 copying build/lib/rna_tools/tools/webserver-engine/admin/js/jquery.init.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-02-14T09:51:45,654 copying build/lib/rna_tools/tools/webserver-engine/admin/js/compress.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-02-14T09:51:45,657 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js/admin 2026-02-14T09:51:45,658 copying build/lib/rna_tools/tools/webserver-engine/admin/js/admin/RelatedObjectLookups.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js/admin 2026-02-14T09:51:45,661 copying build/lib/rna_tools/tools/webserver-engine/admin/js/admin/DateTimeShortcuts.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js/admin 2026-02-14T09:51:45,664 copying build/lib/rna_tools/tools/webserver-engine/admin/js/admin/ordering.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js/admin 2026-02-14T09:51:45,666 copying build/lib/rna_tools/tools/webserver-engine/admin/js/collapse.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-02-14T09:51:45,669 copying build/lib/rna_tools/tools/webserver-engine/admin/js/urlify.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-02-14T09:51:45,673 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:45,674 copying build/lib/rna_tools/tools/webserver-engine/admin/img/deleted-overlay.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:45,677 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon_clock.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:45,679 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon_calendar.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:45,681 copying build/lib/rna_tools/tools/webserver-engine/admin/img/chooser-bg.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:45,683 copying build/lib/rna_tools/tools/webserver-engine/admin/img/default-bg.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:45,685 copying build/lib/rna_tools/tools/webserver-engine/admin/img/inline-splitter-bg.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:45,688 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon_searchbox.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:45,690 copying build/lib/rna_tools/tools/webserver-engine/admin/img/inline-delete-8bit.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:45,692 copying build/lib/rna_tools/tools/webserver-engine/admin/img/tooltag-arrowright.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:45,695 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon-unknown.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:45,697 copying build/lib/rna_tools/tools/webserver-engine/admin/img/changelist-bg_rtl.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:45,699 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon_changelink.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:45,702 copying build/lib/rna_tools/tools/webserver-engine/admin/img/nav-bg-selected.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:45,704 copying build/lib/rna_tools/tools/webserver-engine/admin/img/changelist-bg.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:45,707 copying build/lib/rna_tools/tools/webserver-engine/admin/img/nav-bg-reverse.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:45,709 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon_alert.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:45,711 copying build/lib/rna_tools/tools/webserver-engine/admin/img/inline-restore-8bit.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:45,714 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon_deletelink.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:45,717 copying build/lib/rna_tools/tools/webserver-engine/admin/img/tooltag-arrowright_over.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:45,719 copying build/lib/rna_tools/tools/webserver-engine/admin/img/tool-left.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:45,721 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon-no.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:45,723 copying build/lib/rna_tools/tools/webserver-engine/admin/img/sorting-icons.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:45,726 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon_addlink.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:45,728 copying build/lib/rna_tools/tools/webserver-engine/admin/img/selector-search.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:45,731 copying build/lib/rna_tools/tools/webserver-engine/admin/img/nav-bg.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:45,733 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon_error.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:45,735 copying build/lib/rna_tools/tools/webserver-engine/admin/img/tool-right.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:45,738 copying build/lib/rna_tools/tools/webserver-engine/admin/img/default-bg-reverse.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:45,740 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon-yes.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:45,743 copying build/lib/rna_tools/tools/webserver-engine/admin/img/chooser_stacked-bg.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:45,745 copying build/lib/rna_tools/tools/webserver-engine/admin/img/tool-right_over.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:45,748 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img/gis 2026-02-14T09:51:45,749 copying build/lib/rna_tools/tools/webserver-engine/admin/img/gis/move_vertex_on.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img/gis 2026-02-14T09:51:45,752 copying build/lib/rna_tools/tools/webserver-engine/admin/img/selector-icons.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:45,754 copying build/lib/rna_tools/tools/webserver-engine/admin/img/tool-left_over.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:45,755 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon_success.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:45,757 copying build/lib/rna_tools/tools/webserver-engine/admin/img/inline-delete.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:45,759 copying build/lib/rna_tools/tools/webserver-engine/admin/img/inline-restore.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:45,761 copying build/lib/rna_tools/tools/webserver-engine/admin/img/tooltag-add_over.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:45,762 copying build/lib/rna_tools/tools/webserver-engine/admin/img/nav-bg-grabber.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:45,764 copying build/lib/rna_tools/tools/webserver-engine/admin/img/tooltag-add.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-02-14T09:51:45,766 copying build/lib/rna_tools/tools/webserver-engine/daemon.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-02-14T09:51:45,769 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory 2026-02-14T09:51:45,770 copying build/lib/rna_tools/tools/simrna_trajectory/rna_simrna_lowest.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory 2026-02-14T09:51:45,771 copying build/lib/rna_tools/tools/simrna_trajectory/rna_simrna_energy_plot.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory 2026-02-14T09:51:45,773 copying build/lib/rna_tools/tools/simrna_trajectory/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory 2026-02-14T09:51:45,775 copying build/lib/rna_tools/tools/simrna_trajectory/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory 2026-02-14T09:51:45,776 copying build/lib/rna_tools/tools/simrna_trajectory/rna_simrna_cluster.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory 2026-02-14T09:51:45,778 copying build/lib/rna_tools/tools/simrna_trajectory/test_rmsd.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory 2026-02-14T09:51:45,779 copying build/lib/rna_tools/tools/simrna_trajectory/rna_simrna_extract.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory 2026-02-14T09:51:45,782 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory/test_data 2026-02-14T09:51:45,783 copying build/lib/rna_tools/tools/simrna_trajectory/test_data/mini.trafl -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory/test_data 2026-02-14T09:51:45,786 copying build/lib/rna_tools/tools/simrna_trajectory/simrna_trajectory.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory 2026-02-14T09:51:45,789 copying build/lib/rna_tools/tools/simrna_trajectory/subset.trafl -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory 2026-02-14T09:51:45,801 copying build/lib/rna_tools/tools/simrna_trajectory/rna_simrna_subset.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory 2026-02-14T09:51:45,803 copying build/lib/rna_tools/tools/simrna_trajectory/test_rna_simrna.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory 2026-02-14T09:51:45,805 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/proteins 2026-02-14T09:51:45,806 copying build/lib/rna_tools/tools/proteins/1djf.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/proteins 2026-02-14T09:51:45,809 copying build/lib/rna_tools/tools/proteins/u2-u6-cwc15-trim2_proteinOnly.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/proteins 2026-02-14T09:51:45,811 copying build/lib/rna_tools/tools/proteins/calc_distances.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/proteins 2026-02-14T09:51:45,813 copying build/lib/rna_tools/tools/proteins/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/proteins 2026-02-14T09:51:45,815 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/renum_pdb_to_aln 2026-02-14T09:51:45,816 copying build/lib/rna_tools/tools/renum_pdb_to_aln/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/renum_pdb_to_aln 2026-02-14T09:51:45,818 copying build/lib/rna_tools/tools/renum_pdb_to_aln/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/renum_pdb_to_aln 2026-02-14T09:51:45,820 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/renum_pdb_to_aln/test_data 2026-02-14T09:51:45,821 copying build/lib/rna_tools/tools/renum_pdb_to_aln/test_data/obj01.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/renum_pdb_to_aln/test_data 2026-02-14T09:51:45,824 copying build/lib/rna_tools/tools/renum_pdb_to_aln/test_data/ALN_OBJ1_OBJ2.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/renum_pdb_to_aln/test_data 2026-02-14T09:51:45,826 copying build/lib/rna_tools/tools/renum_pdb_to_aln/test_data/obj01_out.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/renum_pdb_to_aln/test_data 2026-02-14T09:51:45,828 copying build/lib/rna_tools/tools/renum_pdb_to_aln/renum_pdb_to_aln.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/renum_pdb_to_aln 2026-02-14T09:51:45,830 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rnashape2ascii 2026-02-14T09:51:45,831 copying build/lib/rna_tools/tools/rnashape2ascii/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnashape2ascii 2026-02-14T09:51:45,833 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rnashape2ascii/test_data 2026-02-14T09:51:45,834 copying build/lib/rna_tools/tools/rnashape2ascii/test_data/r1_raw.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnashape2ascii/test_data 2026-02-14T09:51:45,836 copying build/lib/rna_tools/tools/rnashape2ascii/test_data/RNAPZ12_1M7_0000.rdat -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnashape2ascii/test_data 2026-02-14T09:51:45,839 copying build/lib/rna_tools/tools/rnashape2ascii/rnashape2ascii.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnashape2ascii 2026-02-14T09:51:45,840 copying build/lib/rna_tools/tools/rnashape2ascii/LICENSE -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnashape2ascii 2026-02-14T09:51:45,843 copying build/lib/rna_tools/tools/rnashape2ascii/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnashape2ascii 2026-02-14T09:51:45,845 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf 2026-02-14T09:51:45,846 copying build/lib/rna_tools/tools/rna_calc_inf/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf 2026-02-14T09:51:45,848 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/doc 2026-02-14T09:51:45,849 copying build/lib/rna_tools/tools/rna_calc_inf/doc/1y26_dinf.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/doc 2026-02-14T09:51:45,853 copying build/lib/rna_tools/tools/rna_calc_inf/doc/1y26_dinf2.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/doc 2026-02-14T09:51:45,865 copying build/lib/rna_tools/tools/rna_calc_inf/rna_calc_inf.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf 2026-02-14T09:51:45,867 copying build/lib/rna_tools/tools/rna_calc_inf/rna_calc_dinf.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf 2026-02-14T09:51:45,869 copying build/lib/rna_tools/tools/rna_calc_inf/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf 2026-02-14T09:51:45,871 copying build/lib/rna_tools/tools/rna_calc_inf/test_dinf.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf 2026-02-14T09:51:45,873 copying build/lib/rna_tools/tools/rna_calc_inf/readme.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf 2026-02-14T09:51:45,876 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-02-14T09:51:45,877 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/pistol.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-02-14T09:51:45,879 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/pistol_inf_m1.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-02-14T09:51:45,881 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/1Y26.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-02-14T09:51:45,886 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/test.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-02-14T09:51:45,888 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/1y26X_M451_dinf -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-02-14T09:51:45,889 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/pistol_inf_selection.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-02-14T09:51:45,891 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/1prot.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-02-14T09:51:45,897 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/pistol_inf_from_SeqSS.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-02-14T09:51:45,899 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/pistol_inf_stacking.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-02-14T09:51:45,901 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/13_Bujnicki_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-02-14T09:51:45,905 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-02-14T09:51:45,906 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13/13_Bujnicki_1_rpr_del46-56.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-02-14T09:51:45,910 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13/orignal.inf -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-02-14T09:51:45,912 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13/inf.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-02-14T09:51:45,913 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13/13_Adamiak_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-02-14T09:51:45,918 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13/13_0_solution_4XW7_rpr_del46-56.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-02-14T09:51:45,922 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13/13_Bujnicki_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-02-14T09:51:45,926 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13/13_Adamiak_1_rpr_del46-56.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-02-14T09:51:45,930 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13/del.inf -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-02-14T09:51:45,932 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13/13_0_solution_4XW7_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-02-14T09:51:45,937 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/1Y26_dinf_comparison.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-02-14T09:51:45,941 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/1y26X_M451.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-02-14T09:51:45,946 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/1Y26_dinf -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-02-14T09:51:45,949 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/13_0_solution_4XW7_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-02-14T09:51:45,954 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/pistol_inf_m10.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-02-14T09:51:45,957 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement 2026-02-14T09:51:45,958 copying build/lib/rna_tools/tools/rna_refinement/rna_refinement.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement 2026-02-14T09:51:45,961 copying build/lib/rna_tools/tools/rna_refinement/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement 2026-02-14T09:51:45,963 copying build/lib/rna_tools/tools/rna_refinement/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement 2026-02-14T09:51:45,965 copying build/lib/rna_tools/tools/rna_refinement/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement 2026-02-14T09:51:45,968 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement/test_data 2026-02-14T09:51:45,969 copying build/lib/rna_tools/tools/rna_refinement/test_data/rp17_179c48aa-c0d3-4bd6-8e06-12081da22998_ALL_thrs6.20A_clust01-000001_AA._refx_refx.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement/test_data 2026-02-14T09:51:45,975 copying build/lib/rna_tools/tools/rna_refinement/test_data/179c48aa-c0d3-4bd6-8e06-12081da22998_ALL_thrs6.20A_clust01-000001_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement/test_data 2026-02-14T09:51:45,980 copying build/lib/rna_tools/tools/rna_refinement/test_data/rp17_179c48aa-c0d3-4bd6-8e06-12081da22998_ALL_thrs6.20A_clust01-000001_AA._refx.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement/test_data 2026-02-14T09:51:45,986 copying build/lib/rna_tools/tools/rna_refinement/test_data/output.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement/test_data 2026-02-14T09:51:45,993 copying build/lib/rna_tools/tools/rna_refinement/test_data/19_Bujnicki_Human_4_rpr_n0-000001.pdb_thrs0.50A_clust99-000001_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement/test_data 2026-02-14T09:51:45,998 copying build/lib/rna_tools/tools/rna_refinement/test_data/input.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement/test_data 2026-02-14T09:51:46,003 copying build/lib/rna_tools/tools/rna_refinement/test_data/input_refx.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement/test_data 2026-02-14T09:51:46,009 copying build/lib/rna_tools/tools/rna_refinement/test_data/19_Bujnicki_Human_4_rpr_n0-000001_refx.pdb_thrs0.50A_clust99-000001_AA_refx.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement/test_data 2026-02-14T09:51:46,016 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/cluster_load 2026-02-14T09:51:46,017 copying build/lib/rna_tools/tools/cluster_load/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/cluster_load 2026-02-14T09:51:46,019 copying build/lib/rna_tools/tools/cluster_load/cluster_load.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/cluster_load 2026-02-14T09:51:46,022 copying build/lib/rna_tools/tools/cluster_load/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/cluster_load 2026-02-14T09:51:46,024 copying build/lib/rna_tools/tools/cluster_load/load -> build/bdist.linux-armv7l/wheel/rna_tools/tools/cluster_load 2026-02-14T09:51:46,026 copying build/lib/rna_tools/tools/cluster_load/cluster_mini_free.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/cluster_load 2026-02-14T09:51:46,029 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats 2026-02-14T09:51:46,030 copying build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats 2026-02-14T09:51:46,032 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats/doc 2026-02-14T09:51:46,034 copying build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/doc/varna_2pk.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats/doc 2026-02-14T09:51:46,038 copying build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/rna_pk_simrna_to_one_line.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats 2026-02-14T09:51:46,040 copying build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/rna_ss_pk_to_simrna.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats 2026-02-14T09:51:46,042 copying build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats 2026-02-14T09:51:46,045 copying build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/readme.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats 2026-02-14T09:51:46,047 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats/test_data 2026-02-14T09:51:46,048 copying build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/test_data/simrna.ss -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats/test_data 2026-02-14T09:51:46,051 copying build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/test_data/ss_with_pk.ss -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats/test_data 2026-02-14T09:51:46,053 copying build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/test_data/simrna_2chains.ss -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats/test_data 2026-02-14T09:51:46,055 copying build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/test_data/simrna3.ss -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats/test_data 2026-02-14T09:51:46,058 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-02-14T09:51:46,059 copying build/lib/rna_tools/tools/rna_filter/rna_pairs2rfilter.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-02-14T09:51:46,061 copying build/lib/rna_tools/tools/rna_filter/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-02-14T09:51:46,063 copying build/lib/rna_tools/tools/rna_filter/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-02-14T09:51:46,065 copying build/lib/rna_tools/tools/rna_filter/rna_ss_get_bps.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-02-14T09:51:46,067 copying build/lib/rna_tools/tools/rna_filter/simrna_get_restraints.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-02-14T09:51:46,069 copying build/lib/rna_tools/tools/rna_filter/rna_pairs2SimRNArestrs.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-02-14T09:51:46,071 copying build/lib/rna_tools/tools/rna_filter/rna_get_dists.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-02-14T09:51:46,074 copying build/lib/rna_tools/tools/rna_filter/rna_dca_select_interactions.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-02-14T09:51:46,076 copying build/lib/rna_tools/tools/rna_filter/test_rna_filter.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-02-14T09:51:46,078 copying build/lib/rna_tools/tools/rna_filter/rna_dca_mapping.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-02-14T09:51:46,081 copying build/lib/rna_tools/tools/rna_filter/rna_get_distances.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-02-14T09:51:46,084 copying build/lib/rna_tools/tools/rna_filter/rna_restrs2SimRNArestrs.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-02-14T09:51:46,086 copying build/lib/rna_tools/tools/rna_filter/rna_ec2x.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-02-14T09:51:46,088 copying build/lib/rna_tools/tools/rna_filter/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-02-14T09:51:46,090 copying build/lib/rna_tools/tools/rna_filter/test_dca.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-02-14T09:51:46,092 copying build/lib/rna_tools/tools/rna_filter/rna_filter.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-02-14T09:51:46,095 copying build/lib/rna_tools/tools/rna_filter/rna_pairs_diff.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-02-14T09:51:46,098 copying build/lib/rna_tools/tools/rna_filter/pymol_dists.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-02-14T09:51:46,100 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter/test_data 2026-02-14T09:51:46,101 copying build/lib/rna_tools/tools/rna_filter/test_data/CG.trafl -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter/test_data 2026-02-14T09:51:46,104 copying build/lib/rna_tools/tools/rna_filter/test_data/rna_filter.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter/test_data 2026-02-14T09:51:46,106 copying build/lib/rna_tools/tools/rna_filter/test_data/restraints.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter/test_data 2026-02-14T09:51:46,108 copying build/lib/rna_tools/tools/rna_filter/test_data/CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter/test_data 2026-02-14T09:51:46,110 copying build/lib/rna_tools/tools/rna_filter/rna_csv2pairs.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-02-14T09:51:46,112 copying build/lib/rna_tools/tools/rna_filter/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-02-14T09:51:46,115 copying build/lib/rna_tools/tools/rna_filter/rna_restrs2mqapRNA.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-02-14T09:51:46,117 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd_trafl 2026-02-14T09:51:46,119 copying build/lib/rna_tools/tools/rna_calc_rmsd_trafl/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd_trafl 2026-02-14T09:51:46,120 copying build/lib/rna_tools/tools/rna_calc_rmsd_trafl/rna_calc_rmsd_trafl.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd_trafl 2026-02-14T09:51:46,123 copying build/lib/rna_tools/tools/rna_calc_rmsd_trafl/rna_cal_rmsd_trafl_plot.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd_trafl 2026-02-14T09:51:46,126 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/plotting 2026-02-14T09:51:46,127 copying build/lib/rna_tools/tools/plotting/rna_plot_density.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/plotting 2026-02-14T09:51:46,129 copying build/lib/rna_tools/tools/plotting/rna_plot_dendogram.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/plotting 2026-02-14T09:51:46,131 copying build/lib/rna_tools/tools/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/plotting 2026-02-14T09:51:46,133 copying build/lib/rna_tools/tools/plotting/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/plotting 2026-02-14T09:51:46,135 copying build/lib/rna_tools/tools/plotting/rna_plot_boxplotlike.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/plotting 2026-02-14T09:51:46,137 copying build/lib/rna_tools/tools/plotting/rna_plot_heatmap.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/plotting 2026-02-14T09:51:46,140 copying build/lib/rna_tools/tools/plotting/rna_plot_hist.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/plotting 2026-02-14T09:51:46,142 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/plotting/test_data 2026-02-14T09:51:46,143 copying build/lib/rna_tools/tools/plotting/test_data/rmsds_hist.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/plotting/test_data 2026-02-14T09:51:46,146 copying build/lib/rna_tools/tools/plotting/test_data/rmsds.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/plotting/test_data 2026-02-14T09:51:46,149 copying build/lib/rna_tools/tools/plotting/test_data/rmsds_dens.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/plotting/test_data 2026-02-14T09:51:46,152 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-02-14T09:51:46,153 copying build/lib/rna_tools/tools/md/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-02-14T09:51:46,155 copying build/lib/rna_tools/tools/md/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-02-14T09:51:46,158 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_output 2026-02-14T09:51:46,159 copying build/lib/rna_tools/tools/md/test_output/1duq_rnakb_ready.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_output 2026-02-14T09:51:46,162 copying build/lib/rna_tools/tools/md/test_output/1msy_output4_01-000001_AA_rnakb_ready.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_output 2026-02-14T09:51:46,165 copying build/lib/rna_tools/tools/md/test_output/RA5_G.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_output 2026-02-14T09:51:46,168 copying build/lib/rna_tools/tools/md/test_output/1duq_rpr_rnakb_ready.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_output 2026-02-14T09:51:46,171 copying build/lib/rna_tools/tools/md/test_output/3nt_edited_rnakb_ready.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_output 2026-02-14T09:51:46,174 copying build/lib/rna_tools/tools/md/test_output/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_error_fx_rnakb_ready.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_output 2026-02-14T09:51:46,177 copying build/lib/rna_tools/tools/md/rna_traj_range.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-02-14T09:51:46,179 copying build/lib/rna_tools/tools/md/rna_gromacs_ready.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-02-14T09:51:46,181 copying build/lib/rna_tools/tools/md/rna_traj_n.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-02-14T09:51:46,183 copying build/lib/rna_tools/tools/md/rna_traj_nohetm.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-02-14T09:51:46,185 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/md/data 2026-02-14T09:51:46,186 copying build/lib/rna_tools/tools/md/data/rnakb_all.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/data 2026-02-14T09:51:46,190 copying build/lib/rna_tools/tools/md/rna_md.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-02-14T09:51:46,192 copying build/lib/rna_tools/tools/md/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-02-14T09:51:46,194 copying build/lib/rna_tools/tools/md/out.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-02-14T09:51:46,196 copying build/lib/rna_tools/tools/md/rnakb_utils.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-02-14T09:51:46,200 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_data 2026-02-14T09:51:46,201 copying build/lib/rna_tools/tools/md/test_data/1duq.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_data 2026-02-14T09:51:46,204 copying build/lib/rna_tools/tools/md/test_data/groups.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_data 2026-02-14T09:51:46,206 copying build/lib/rna_tools/tools/md/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_error_fx.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_data 2026-02-14T09:51:46,209 copying build/lib/rna_tools/tools/md/test_data/3nt.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_data 2026-02-14T09:51:46,212 copying build/lib/rna_tools/tools/md/test_data/decoy0165_amb_clx.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_data 2026-02-14T09:51:46,215 copying build/lib/rna_tools/tools/md/test_data/1duq -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_data 2026-02-14T09:51:46,217 copying build/lib/rna_tools/tools/md/test_data/RA5_G.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_data 2026-02-14T09:51:46,220 copying build/lib/rna_tools/tools/md/test_data/3nt_edited.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_data 2026-02-14T09:51:46,222 copying build/lib/rna_tools/tools/md/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_noC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_data 2026-02-14T09:51:46,225 copying build/lib/rna_tools/tools/md/test_data/1msy_output4_01-000001_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_data 2026-02-14T09:51:46,228 copying build/lib/rna_tools/tools/md/test_data/temp.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_data 2026-02-14T09:51:46,231 copying build/lib/rna_tools/tools/md/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_error_fx_rmPO.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_data 2026-02-14T09:51:46,234 copying build/lib/rna_tools/tools/md/test_data/1duq_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_data 2026-02-14T09:51:46,237 copying build/lib/rna_tools/tools/md/rna_minimize.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-02-14T09:51:46,239 copying build/lib/rna_tools/tools/md/test.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-02-14T09:51:46,242 copying build/lib/rna_tools/tools/md/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-02-14T09:51:46,244 copying build/lib/rna_tools/tools/md/rna_get_energy.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-02-14T09:51:46,246 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_app 2026-02-14T09:51:46,247 copying build/lib/rna_tools/tools/clarna_app/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_app 2026-02-14T09:51:46,250 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_app/data 2026-02-14T09:51:46,251 copying build/lib/rna_tools/tools/clarna_app/data/cl.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_app/data 2026-02-14T09:51:46,254 copying build/lib/rna_tools/tools/clarna_app/data/cl_full.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_app/data 2026-02-14T09:51:46,256 copying build/lib/rna_tools/tools/clarna_app/data/cl_short.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_app/data 2026-02-14T09:51:46,258 copying build/lib/rna_tools/tools/clarna_app/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_app 2026-02-14T09:51:46,260 copying build/lib/rna_tools/tools/clarna_app/readme.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_app 2026-02-14T09:51:46,262 copying build/lib/rna_tools/tools/clarna_app/test.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_app 2026-02-14T09:51:46,263 copying build/lib/rna_tools/tools/clarna_app/rna_clarna2graph.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_app 2026-02-14T09:51:46,266 copying build/lib/rna_tools/tools/clarna_app/rna_clarna_app.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_app 2026-02-14T09:51:46,269 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play 2026-02-14T09:51:46,270 copying build/lib/rna_tools/tools/clarna_play/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play 2026-02-14T09:51:46,272 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/test_output 2026-02-14T09:51:46,273 copying build/lib/rna_tools/tools/clarna_play/test_output/3e5fA_M15_c.pdb.outCR -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/test_output 2026-02-14T09:51:46,276 copying build/lib/rna_tools/tools/clarna_play/test_output/3e5fA_M500_c.pdb.outCR -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/test_output 2026-02-14T09:51:46,278 copying build/lib/rna_tools/tools/clarna_play/PDBSeq.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play 2026-02-14T09:51:46,281 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/docs 2026-02-14T09:51:46,282 copying build/lib/rna_tools/tools/clarna_play/docs/clarna_run.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/docs 2026-02-14T09:51:46,286 copying build/lib/rna_tools/tools/clarna_play/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play 2026-02-14T09:51:46,288 copying build/lib/rna_tools/tools/clarna_play/rna_clarna_compare.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play 2026-02-14T09:51:46,291 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib 2026-02-14T09:51:46,293 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/cl_settings_global.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib 2026-02-14T09:51:46,295 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib 2026-02-14T09:51:46,297 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib 2026-02-14T09:51:46,299 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/structure_ciach.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib 2026-02-14T09:51:46,301 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/clarna.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib 2026-02-14T09:51:46,305 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/cl_settings.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib 2026-02-14T09:51:46,307 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/descriptions-dict.json -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib 2026-02-14T09:51:46,310 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-02-14T09:51:46,311 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.bp.json.gz -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-02-14T09:51:46,390 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.other3.json.gz -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-02-14T09:51:46,393 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.base-phosphate.json.gz -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-02-14T09:51:46,427 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.base-ribose.json.gz -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-02-14T09:51:46,461 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.other.json.gz -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-02-14T09:51:46,469 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.stacking.json.gz -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-02-14T09:51:46,569 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.other2.json.gz -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-02-14T09:51:46,570 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib 2026-02-14T09:51:46,572 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/utils.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib 2026-02-14T09:51:46,575 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/distances.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib 2026-02-14T09:51:46,578 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/normalize_pdb.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib 2026-02-14T09:51:46,580 copying build/lib/rna_tools/tools/clarna_play/readme.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play 2026-02-14T09:51:46,583 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/test_data 2026-02-14T09:51:46,584 copying build/lib/rna_tools/tools/clarna_play/test_data/1kxk_00_A.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/test_data 2026-02-14T09:51:46,588 copying build/lib/rna_tools/tools/clarna_play/test_data/ss.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/test_data 2026-02-14T09:51:46,590 copying build/lib/rna_tools/tools/clarna_play/test_data/2a43_00_A.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/test_data 2026-02-14T09:51:46,593 copying build/lib/rna_tools/tools/clarna_play/test_data/1a51_00_A.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/test_data 2026-02-14T09:51:46,597 copying build/lib/rna_tools/tools/clarna_play/test_data/5k7c_clean_onechain_renumber_as_puzzle_srr_AB.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/test_data 2026-02-14T09:51:46,603 copying build/lib/rna_tools/tools/clarna_play/test_data/3e5fA_M15_c.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/test_data 2026-02-14T09:51:46,607 copying build/lib/rna_tools/tools/clarna_play/test_data/5k7c.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/test_data 2026-02-14T09:51:46,612 copying build/lib/rna_tools/tools/clarna_play/test_data/3e5fA_M500_c.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/test_data 2026-02-14T09:51:46,616 copying build/lib/rna_tools/tools/clarna_play/test_data/1q9a_00_A.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/test_data 2026-02-14T09:51:46,619 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/tests 2026-02-14T09:51:46,620 copying build/lib/rna_tools/tools/clarna_play/tests/3e5fA_M15.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/tests 2026-02-14T09:51:46,623 copying build/lib/rna_tools/tools/clarna_play/tests/1evv_00_A.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/tests 2026-02-14T09:51:46,627 copying build/lib/rna_tools/tools/clarna_play/tests/3e5fA_M500.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/tests 2026-02-14T09:51:46,632 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/lib 2026-02-14T09:51:46,633 copying build/lib/rna_tools/tools/clarna_play/lib/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/lib 2026-02-14T09:51:46,635 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/lib/rna_pdb_tools 2026-02-14T09:51:46,637 copying build/lib/rna_tools/tools/clarna_play/lib/rna_pdb_tools/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/lib/rna_pdb_tools 2026-02-14T09:51:46,638 copying build/lib/rna_tools/tools/clarna_play/lib/rna_pdb_tools/rna-pdb-tools.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/lib/rna_pdb_tools 2026-02-14T09:51:46,641 copying build/lib/rna_tools/tools/clarna_play/lib/rna_pdb_tools/pdb_parser_lib.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/lib/rna_pdb_tools 2026-02-14T09:51:46,644 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS 2026-02-14T09:51:46,645 copying build/lib/rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS/ClaRNAwd_output_parser.h -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS 2026-02-14T09:51:46,647 copying build/lib/rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS/ClaRNAwd_output_parser.cpp -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS 2026-02-14T09:51:46,650 copying build/lib/rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS/Makefile -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS 2026-02-14T09:51:46,651 copying build/lib/rna_tools/tools/clarna_play/rna_clarna_run.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play 2026-02-14T09:51:46,655 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_gdt 2026-02-14T09:51:46,656 copying build/lib/rna_tools/tools/rna_calc_gdt/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_gdt 2026-02-14T09:51:46,658 copying build/lib/rna_tools/tools/rna_calc_gdt/rna_calc_gdt.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_gdt 2026-02-14T09:51:46,660 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-02-14T09:51:46,661 copying build/lib/rna_tools/tools/workflow/rm_csvs_smaller_than_2k.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-02-14T09:51:46,663 copying build/lib/rna_tools/tools/workflow/run -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-02-14T09:51:46,665 copying build/lib/rna_tools/tools/workflow/run_1 -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-02-14T09:51:46,668 copying build/lib/rna_tools/tools/workflow/rm_less_2k.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-02-14T09:51:46,669 copying build/lib/rna_tools/tools/workflow/clean.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-02-14T09:51:46,671 copying build/lib/rna_tools/tools/workflow/automatix.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-02-14T09:51:46,673 copying build/lib/rna_tools/tools/workflow/chunker.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-02-14T09:51:46,675 copying build/lib/rna_tools/tools/workflow/inf_all.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-02-14T09:51:46,676 copying build/lib/rna_tools/tools/workflow/rna_workflow.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-02-14T09:51:46,678 copying build/lib/rna_tools/tools/workflow/mass_inf.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-02-14T09:51:46,680 copying build/lib/rna_tools/tools/workflow/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-02-14T09:51:46,681 copying build/lib/rna_tools/tools/workflow/mqaprna_run copy.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-02-14T09:51:46,687 copying build/lib/rna_tools/tools/workflow/mqaprna_massive_destruction.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-02-14T09:51:46,689 copying build/lib/rna_tools/tools/workflow/after_peyote_clean.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-02-14T09:51:46,691 copying build/lib/rna_tools/tools/workflow/xxdownload_job_and_process.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-02-14T09:51:46,693 copying build/lib/rna_tools/tools/workflow/pdb_list.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-02-14T09:51:46,695 copying build/lib/rna_tools/tools/workflow/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-02-14T09:51:46,696 copying build/lib/rna_tools/tools/workflow/rp13_automatix.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-02-14T09:51:46,698 copying build/lib/rna_tools/tools/workflow/evox.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-02-14T09:51:46,700 copying build/lib/rna_tools/tools/workflow/run.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-02-14T09:51:46,702 copying build/lib/rna_tools/tools/workflow/mqaprna_run.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-02-14T09:51:46,709 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix 2026-02-14T09:51:46,710 copying build/lib/rna_tools/tools/clanstix/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix 2026-02-14T09:51:46,712 copying build/lib/rna_tools/tools/clanstix/colors.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix 2026-02-14T09:51:46,714 copying build/lib/rna_tools/tools/clanstix/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix 2026-02-14T09:51:46,716 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/doc 2026-02-14T09:51:46,717 copying build/lib/rna_tools/tools/clanstix/doc/rna_clanstix.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/doc 2026-02-14T09:51:46,720 copying build/lib/rna_tools/tools/clanstix/doc/rp18_clanstix.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/doc 2026-02-14T09:51:46,724 copying build/lib/rna_tools/tools/clanstix/doc/yndSrLTb7l.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/doc 2026-02-14T09:51:46,743 copying build/lib/rna_tools/tools/clanstix/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix 2026-02-14T09:51:46,745 copying build/lib/rna_tools/tools/clanstix/test2.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix 2026-02-14T09:51:46,746 copying build/lib/rna_tools/tools/clanstix/test3.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix 2026-02-14T09:51:46,748 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data 2026-02-14T09:51:46,749 copying build/lib/rna_tools/tools/clanstix/test_data/rp18_rmsd.in -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data 2026-02-14T09:51:46,752 copying build/lib/rna_tools/tools/clanstix/test_data/matrix.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data 2026-02-14T09:51:46,754 copying build/lib/rna_tools/tools/clanstix/test_data/gmp.clans -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data 2026-02-14T09:51:46,758 copying build/lib/rna_tools/tools/clanstix/test_data/gmp_color_by_homolog_shape_by_source.clans -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data 2026-02-14T09:51:46,763 copying build/lib/rna_tools/tools/clanstix/test_data/gmp_ref_mapping_pk_refX.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data 2026-02-14T09:51:46,766 copying build/lib/rna_tools/tools/clanstix/test_data/rp18_rmsd.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data 2026-02-14T09:51:46,768 copying build/lib/rna_tools/tools/clanstix/test_data/rp13_RNAevo_fragments_clans_raw.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data 2026-02-14T09:51:46,788 copying build/lib/rna_tools/tools/clanstix/test_data/gmp_color_by_homolog.clans -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data 2026-02-14T09:51:46,793 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data/rp17_del 2026-02-14T09:51:46,794 copying build/lib/rna_tools/tools/clanstix/test_data/rp17_del/clans.input -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data/rp17_del 2026-02-14T09:51:46,801 copying build/lib/rna_tools/tools/clanstix/test_data/rp17_del/rp17_clans.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data/rp17_del 2026-02-14T09:51:46,811 copying build/lib/rna_tools/tools/clanstix/test_data/rp17_del/rp17_rmsd.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data/rp17_del 2026-02-14T09:51:46,816 copying build/lib/rna_tools/tools/clanstix/test_data/rp17_del/rp17_clans_process.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data/rp17_del 2026-02-14T09:51:46,894 copying build/lib/rna_tools/tools/clanstix/test_data/rp17_del/run.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data/rp17_del 2026-02-14T09:51:46,896 copying build/lib/rna_tools/tools/clanstix/LICENSE -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix 2026-02-14T09:51:46,899 copying build/lib/rna_tools/tools/clanstix/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix 2026-02-14T09:51:46,901 copying build/lib/rna_tools/tools/clanstix/rna_clanstix.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix 2026-02-14T09:51:46,905 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_prediction_significance 2026-02-14T09:51:46,906 copying build/lib/rna_tools/tools/rna_prediction_significance/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_prediction_significance 2026-02-14T09:51:46,907 copying build/lib/rna_tools/tools/rna_prediction_significance/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_prediction_significance 2026-02-14T09:51:46,909 copying build/lib/rna_tools/tools/rna_prediction_significance/rna_prediction_significance.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_prediction_significance 2026-02-14T09:51:46,911 copying build/lib/rna_tools/tools/rna_prediction_significance/LICENSE -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_prediction_significance 2026-02-14T09:51:46,913 copying build/lib/rna_tools/tools/rna_prediction_significance/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_prediction_significance 2026-02-14T09:51:46,916 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_prediction_significance/opt 2026-02-14T09:51:46,917 copying build/lib/rna_tools/tools/rna_prediction_significance/opt/RNA_PredictionSignificance.cpp -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_prediction_significance/opt 2026-02-14T09:51:46,919 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6 2026-02-14T09:51:46,920 copying build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/select_seq_fromBLAStn_6outfm.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6 2026-02-14T09:51:46,922 copying build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6 2026-02-14T09:51:46,925 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data 2026-02-14T09:51:46,926 copying build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data/output_55 -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data 2026-02-14T09:51:46,928 copying build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data/db_nt_out.fasta -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data 2026-02-14T09:51:46,929 copying build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data/db_nt.fasta -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data 2026-02-14T09:51:46,932 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds 2026-02-14T09:51:46,933 copying build/lib/rna_tools/tools/rna_calc_hbonds/pymol_list_hbonds.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds 2026-02-14T09:51:46,935 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/docs 2026-02-14T09:51:46,936 copying build/lib/rna_tools/tools/rna_calc_hbonds/docs/hbonds_pymol.jpg -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/docs 2026-02-14T09:51:46,941 copying build/lib/rna_tools/tools/rna_calc_hbonds/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds 2026-02-14T09:51:46,943 copying build/lib/rna_tools/tools/rna_calc_hbonds/mdanalysis_hbonds.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds 2026-02-14T09:51:46,945 copying build/lib/rna_tools/tools/rna_calc_hbonds/rna_calc_hbonds.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds 2026-02-14T09:51:46,946 copying build/lib/rna_tools/tools/rna_calc_hbonds/readme.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds 2026-02-14T09:51:46,949 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/test_data 2026-02-14T09:51:46,950 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr.pse -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/test_data 2026-02-14T09:51:46,953 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/7jnh-AUA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/test_data 2026-02-14T09:51:46,955 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_addChimera_onlyBases.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/test_data 2026-02-14T09:51:46,957 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/7jnh-AUA_ha.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/test_data 2026-02-14T09:51:46,959 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/7jnh-AUA_ha.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/test_data 2026-02-14T09:51:46,961 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_addChimera_onlyBases.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/test_data 2026-02-14T09:51:46,963 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_addChimera.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/test_data 2026-02-14T09:51:46,965 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/test_data 2026-02-14T09:51:46,968 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/7jnh-AUA.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/test_data 2026-02-14T09:51:46,969 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_addh.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/test_data 2026-02-14T09:51:46,972 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_bases_only_addhpymol.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/test_data 2026-02-14T09:51:46,974 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_bases_only.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/test_data 2026-02-14T09:51:46,976 copying build/lib/rna_tools/tools/rna_calc_hbonds/mdtraj_hbonds.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds 2026-02-14T09:51:46,978 copying build/lib/rna_tools/tools/rna_calc_hbonds/pytraj_hbond.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds 2026-02-14T09:51:46,980 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-02-14T09:51:46,981 copying build/lib/rna_tools/tools/triplexibility/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-02-14T09:51:46,983 copying build/lib/rna_tools/tools/triplexibility/trx_analysis.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-02-14T09:51:46,984 copying build/lib/rna_tools/tools/triplexibility/process_triple.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-02-14T09:51:46,986 copying build/lib/rna_tools/tools/triplexibility/trx_mutagen_allvsall.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-02-14T09:51:46,988 copying build/lib/rna_tools/tools/triplexibility/trx_analysis.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-02-14T09:51:46,990 copying build/lib/rna_tools/tools/triplexibility/download-all.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-02-14T09:51:46,991 copying build/lib/rna_tools/tools/triplexibility/download-all-pdbs.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-02-14T09:51:46,994 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility/db 2026-02-14T09:51:46,995 copying build/lib/rna_tools/tools/triplexibility/db/gendb.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility/db 2026-02-14T09:51:46,997 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility/data 2026-02-14T09:51:46,998 copying build/lib/rna_tools/tools/triplexibility/data/t1-1-Triple_cWW_cHS_GCU_exemplar_rpr_fx.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility/data 2026-02-14T09:51:47,001 copying build/lib/rna_tools/tools/triplexibility/data/cWW_cHS_GCU.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility/data 2026-02-14T09:51:47,002 copying build/lib/rna_tools/tools/triplexibility/data/db.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility/data 2026-02-14T09:51:47,005 copying build/lib/rna_tools/tools/triplexibility/data/db_trx2.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility/data 2026-02-14T09:51:47,007 copying build/lib/rna_tools/tools/triplexibility/data/XcWWX.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility/data 2026-02-14T09:51:47,009 copying build/lib/rna_tools/tools/triplexibility/data/t1-1-Triple_cWW_cHS_GCU_exemplar_rpr_fx.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility/data 2026-02-14T09:51:47,011 copying build/lib/rna_tools/tools/triplexibility/triple-db.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-02-14T09:51:47,016 copying build/lib/rna_tools/tools/triplexibility/trx-mutget-t1-2.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-02-14T09:51:47,018 copying build/lib/rna_tools/tools/triplexibility/triplexibility2.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-02-14T09:51:47,020 copying build/lib/rna_tools/tools/triplexibility/trx_score.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-02-14T09:51:47,022 copying build/lib/rna_tools/tools/triplexibility/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-02-14T09:51:47,024 copying build/lib/rna_tools/tools/triplexibility/trx_score_onCol_allvsall.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-02-14T09:51:47,027 copying build/lib/rna_tools/tools/triplexibility/trx_score_onCol.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-02-14T09:51:47,029 copying build/lib/rna_tools/tools/triplexibility/readme.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-02-14T09:51:47,030 copying build/lib/rna_tools/tools/triplexibility/lib.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-02-14T09:51:47,033 copying build/lib/rna_tools/tools/triplexibility/trx_score_growth.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-02-14T09:51:47,034 copying build/lib/rna_tools/tools/triplexibility/download-all-triples.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-02-14T09:51:47,036 copying build/lib/rna_tools/tools/triplexibility/trx-mutget-t1-1.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-02-14T09:51:47,038 copying build/lib/rna_tools/tools/triplexibility/trx_score_allvsall.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-02-14T09:51:47,039 copying build/lib/rna_tools/tools/triplexibility/triplexibility.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-02-14T09:51:47,042 copying build/lib/rna_tools/tools/triplexibility/test_all.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-02-14T09:51:47,043 copying build/lib/rna_tools/tools/triplexibility/splix.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-02-14T09:51:47,045 copying build/lib/rna_tools/tools/triplexibility/trx_mutagen.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-02-14T09:51:47,047 copying build/lib/rna_tools/tools/triplexibility/trx.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-02-14T09:51:47,049 copying build/lib/rna_tools/tools/triplexibility/trx.ipynb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-02-14T09:51:47,052 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_identity 2026-02-14T09:51:47,052 copying build/lib/rna_tools/tools/rna_seq_identity/pairwase.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_identity 2026-02-14T09:51:47,054 copying build/lib/rna_tools/tools/rna_seq_identity/seq1.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_identity 2026-02-14T09:51:47,056 copying build/lib/rna_tools/tools/rna_seq_identity/seq12.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_identity 2026-02-14T09:51:47,058 copying build/lib/rna_tools/tools/rna_seq_identity/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_identity 2026-02-14T09:51:47,060 copying build/lib/rna_tools/tools/rna_seq_identity/seq2.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_identity 2026-02-14T09:51:47,061 copying build/lib/rna_tools/tools/rna_seq_identity/output.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_identity 2026-02-14T09:51:47,063 copying build/lib/rna_tools/tools/rna_seq_identity/readme.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_identity 2026-02-14T09:51:47,078 copying build/lib/rna_tools/tools/rna_seq_identity/RF03167.cm -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_identity 2026-02-14T09:51:47,082 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/extra_functions 2026-02-14T09:51:47,083 copying build/lib/rna_tools/tools/extra_functions/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/extra_functions 2026-02-14T09:51:47,084 copying build/lib/rna_tools/tools/extra_functions/numbering.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/extra_functions 2026-02-14T09:51:47,086 copying build/lib/rna_tools/tools/extra_functions/gen_numbering.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/extra_functions 2026-02-14T09:51:47,088 copying build/lib/rna_tools/tools/extra_functions/select_fragment.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/extra_functions 2026-02-14T09:51:47,091 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq 2026-02-14T09:51:47,093 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP 2026-02-14T09:51:47,094 copying build/lib/rna_tools/tools/mq/RASP/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP 2026-02-14T09:51:47,095 copying build/lib/rna_tools/tools/mq/RASP/rasp_for_pymol.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP 2026-02-14T09:51:47,097 copying build/lib/rna_tools/tools/mq/RASP/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP 2026-02-14T09:51:47,099 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP/test 2026-02-14T09:51:47,100 copying build/lib/rna_tools/tools/mq/RASP/test/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP/test 2026-02-14T09:51:47,102 copying build/lib/rna_tools/tools/mq/RASP/test/test_sorted_rasp_all.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP/test 2026-02-14T09:51:47,104 copying build/lib/rna_tools/tools/mq/RASP/test/17_Das_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP/test 2026-02-14T09:51:47,107 copying build/lib/rna_tools/tools/mq/RASP/test/test.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP/test 2026-02-14T09:51:47,109 copying build/lib/rna_tools/tools/mq/RASP/test/mq.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP/test 2026-02-14T09:51:47,111 copying build/lib/rna_tools/tools/mq/RASP/test/17_Das_4_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP/test 2026-02-14T09:51:47,114 copying build/lib/rna_tools/tools/mq/RASP/test/17_Bujnicki_7_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP/test 2026-02-14T09:51:47,118 copying build/lib/rna_tools/tools/mq/RASP/test/test.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP/test 2026-02-14T09:51:47,120 copying build/lib/rna_tools/tools/mq/RASP/RASP.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP 2026-02-14T09:51:47,122 copying build/lib/rna_tools/tools/mq/RASP/test.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP 2026-02-14T09:51:47,124 copying build/lib/rna_tools/tools/mq/RASP/rna_mq_rasp.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP 2026-02-14T09:51:47,126 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARNA 2026-02-14T09:51:47,127 copying build/lib/rna_tools/tools/mq/FARNA/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARNA 2026-02-14T09:51:47,129 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARNA/test_output 2026-02-14T09:51:47,130 copying build/lib/rna_tools/tools/mq/FARNA/test_output/1y26X_output4_01-000001_AA.pdb_rna_mq_collect_FARNA_lores.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARNA/test_output 2026-02-14T09:51:47,131 copying build/lib/rna_tools/tools/mq/FARNA/test_output/1xjrA_rna_mq_collect_FARNA_hires.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARNA/test_output 2026-02-14T09:51:47,133 copying build/lib/rna_tools/tools/mq/FARNA/test_output/1y26X_output4_01-000001_AA.pdb_rna_mq_farna_lores.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARNA/test_output 2026-02-14T09:51:47,135 copying build/lib/rna_tools/tools/mq/FARNA/FARNA.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARNA 2026-02-14T09:51:47,137 copying build/lib/rna_tools/tools/mq/FARNA/rna_mq_farna.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARNA 2026-02-14T09:51:47,139 copying build/lib/rna_tools/tools/mq/FARNA/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARNA 2026-02-14T09:51:47,142 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/tmp 2026-02-14T09:51:47,143 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/tmp/yC_5LJ3_U2U6_core_1st_triplex_6-61A_2-21U_refx 2026-02-14T09:51:47,144 copying build/lib/rna_tools/tools/mq/tmp/yC_5LJ3_U2U6_core_1st_triplex_6-61A_2-21U_refx/configfile.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/tmp/yC_5LJ3_U2U6_core_1st_triplex_6-61A_2-21U_refx 2026-02-14T09:51:47,147 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARFAR2 2026-02-14T09:51:47,148 copying build/lib/rna_tools/tools/mq/FARFAR2/rna_mq_farfar2.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARFAR2 2026-02-14T09:51:47,150 copying build/lib/rna_tools/tools/mq/FARFAR2/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARFAR2 2026-02-14T09:51:47,152 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARFAR2/test_output 2026-02-14T09:51:47,152 copying build/lib/rna_tools/tools/mq/FARFAR2/test_output/ff2_rna_mq_collect.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARFAR2/test_output 2026-02-14T09:51:47,154 copying build/lib/rna_tools/tools/mq/FARFAR2/test_output/.python-version -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARFAR2/test_output 2026-02-14T09:51:47,156 copying build/lib/rna_tools/tools/mq/FARFAR2/test_output/ff2.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARFAR2/test_output 2026-02-14T09:51:47,158 copying build/lib/rna_tools/tools/mq/FARFAR2/test_output/ff2_hires_rna_mq_collect.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARFAR2/test_output 2026-02-14T09:51:47,159 copying build/lib/rna_tools/tools/mq/FARFAR2/test_output/ff2_hires.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARFAR2/test_output 2026-02-14T09:51:47,161 copying build/lib/rna_tools/tools/mq/FARFAR2/FARFAR2.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARFAR2 2026-02-14T09:51:47,164 copying build/lib/rna_tools/tools/mq/FARFAR2/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARFAR2 2026-02-14T09:51:47,166 copying build/lib/rna_tools/tools/mq/rna_mq_remote.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq 2026-02-14T09:51:47,168 copying build/lib/rna_tools/tools/mq/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq 2026-02-14T09:51:47,170 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/rsRNASP 2026-02-14T09:51:47,171 copying build/lib/rna_tools/tools/mq/rsRNASP/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/rsRNASP 2026-02-14T09:51:47,174 copying build/lib/rna_tools/tools/mq/rsRNASP/rsRNASP.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/rsRNASP 2026-02-14T09:51:47,176 copying build/lib/rna_tools/tools/mq/rsRNASP/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/rsRNASP 2026-02-14T09:51:47,179 copying build/lib/rna_tools/tools/mq/rsRNASP/rna_mq_rsRNASP.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/rsRNASP 2026-02-14T09:51:47,181 copying build/lib/rna_tools/tools/mq/rna_mq_wx_collect.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq 2026-02-14T09:51:47,184 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAscore 2026-02-14T09:51:47,185 copying build/lib/rna_tools/tools/mq/RNAscore/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAscore 2026-02-14T09:51:47,187 copying build/lib/rna_tools/tools/mq/RNAscore/RNAscore.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAscore 2026-02-14T09:51:47,190 copying build/lib/rna_tools/tools/mq/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq 2026-02-14T09:51:47,193 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb 2026-02-14T09:51:47,194 copying build/lib/rna_tools/tools/mq/RNAkb/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb 2026-02-14T09:51:47,196 copying build/lib/rna_tools/tools/mq/RNAkb/RNAkb.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb 2026-02-14T09:51:47,199 copying build/lib/rna_tools/tools/mq/RNAkb/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb 2026-02-14T09:51:47,202 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-02-14T09:51:47,203 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/1msy_nt1.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-02-14T09:51:47,207 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/C.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-02-14T09:51:47,210 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/1duq.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-02-14T09:51:47,214 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/1dqf.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-02-14T09:51:47,218 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-02-14T09:51:47,221 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_error_fx.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-02-14T09:51:47,225 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/333d.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-02-14T09:51:47,231 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_error.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-02-14T09:51:47,234 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clx.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-02-14T09:51:47,239 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_noC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-02-14T09:51:47,290 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/1z58.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-02-14T09:51:47,362 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/1ykq.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-02-14T09:51:47,366 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/434d.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-02-14T09:51:47,368 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/1msy_output4_01-000001_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-02-14T09:51:47,371 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/1dqf_noCA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-02-14T09:51:47,374 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/1dqf_noCA+ResnShift.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-02-14T09:51:47,376 copying build/lib/rna_tools/tools/mq/RNAkb/rna_mq_rnakb.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb 2026-02-14T09:51:47,378 copying build/lib/rna_tools/tools/mq/rna_mq_plot.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq 2026-02-14T09:51:47,380 copying build/lib/rna_tools/tools/mq/rna_mq_score.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq 2026-02-14T09:51:47,383 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/eSCORE 2026-02-14T09:51:47,384 copying build/lib/rna_tools/tools/mq/eSCORE/rna_mq_eSCORE.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/eSCORE 2026-02-14T09:51:47,386 copying build/lib/rna_tools/tools/mq/eSCORE/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/eSCORE 2026-02-14T09:51:47,387 copying build/lib/rna_tools/tools/mq/eSCORE/eSCORE.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/eSCORE 2026-02-14T09:51:47,389 copying build/lib/rna_tools/tools/mq/eSCORE/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/eSCORE 2026-02-14T09:51:47,391 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/eSCORE/test 2026-02-14T09:51:47,392 copying build/lib/rna_tools/tools/mq/eSCORE/test/escore.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/eSCORE/test 2026-02-14T09:51:47,395 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-02-14T09:51:47,396 copying build/lib/rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_SwapChains.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-02-14T09:51:47,399 copying build/lib/rna_tools/tools/mq/test/test2.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-02-14T09:51:47,402 copying build/lib/rna_tools/tools/mq/test/test.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-02-14T09:51:47,406 copying build/lib/rna_tools/tools/mq/test/ggg-t1_yCs_5MPS.pdb2-21g-6-61g+80g-rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-02-14T09:51:47,408 copying build/lib/rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_SwapChainsAB.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-02-14T09:51:47,410 copying build/lib/rna_tools/tools/mq/test/1xjrA_M1.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-02-14T09:51:47,415 copying build/lib/rna_tools/tools/mq/test/2pcw_1_2chains.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-02-14T09:51:47,420 copying build/lib/rna_tools/tools/mq/test/1y26X_output4_01-000001_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-02-14T09:51:47,425 copying build/lib/rna_tools/tools/mq/test/1zhoH.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-02-14T09:51:47,430 copying build/lib/rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_SwapChainsOneChain.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-02-14T09:51:47,433 copying build/lib/rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-02-14T09:51:47,436 copying build/lib/rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_2.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-02-14T09:51:47,439 copying build/lib/rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_6.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-02-14T09:51:47,442 copying build/lib/rna_tools/tools/mq/test/dfire.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-02-14T09:51:47,444 copying build/lib/rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_x4chains.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-02-14T09:51:47,447 copying build/lib/rna_tools/tools/mq/test/6TNA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-02-14T09:51:47,456 copying build/lib/rna_tools/tools/mq/test/1xjrA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-02-14T09:51:47,461 copying build/lib/rna_tools/tools/mq/test/1xjrA_output4_04-000056_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-02-14T09:51:47,466 copying build/lib/rna_tools/tools/mq/test/1a9n.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-02-14T09:51:47,469 copying build/lib/rna_tools/tools/mq/test/all.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-02-14T09:51:47,471 copying build/lib/rna_tools/tools/mq/test/3e5f_output4_01-000001_AA+ResnShift.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-02-14T09:51:47,474 copying build/lib/rna_tools/tools/mq/test/1xjrA_M500.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-02-14T09:51:47,477 copying build/lib/rna_tools/tools/mq/test/1msy_output4_01-000001_AA_edited.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-02-14T09:51:47,481 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/ClashScore 2026-02-14T09:51:47,482 copying build/lib/rna_tools/tools/mq/ClashScore/ClashScore.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/ClashScore 2026-02-14T09:51:47,485 copying build/lib/rna_tools/tools/mq/ClashScore/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/ClashScore 2026-02-14T09:51:47,486 copying build/lib/rna_tools/tools/mq/ClashScore/rna_mq_clashscore.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/ClashScore 2026-02-14T09:51:47,488 copying build/lib/rna_tools/tools/mq/ClashScore/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/ClashScore 2026-02-14T09:51:47,490 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/QRNAS 2026-02-14T09:51:47,492 copying build/lib/rna_tools/tools/mq/QRNAS/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/QRNAS 2026-02-14T09:51:47,493 copying build/lib/rna_tools/tools/mq/QRNAS/QRNAS.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/QRNAS 2026-02-14T09:51:47,496 copying build/lib/rna_tools/tools/mq/QRNAS/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/QRNAS 2026-02-14T09:51:47,498 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/QRNAS/test 2026-02-14T09:51:47,499 copying build/lib/rna_tools/tools/mq/QRNAS/test/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/QRNAS/test 2026-02-14T09:51:47,501 copying build/lib/rna_tools/tools/mq/QRNAS/test/unmod_Val3_tRNA_model_si.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/QRNAS/test 2026-02-14T09:51:47,505 copying build/lib/rna_tools/tools/mq/QRNAS/test/test.output -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/QRNAS/test 2026-02-14T09:51:47,506 copying build/lib/rna_tools/tools/mq/QRNAS/test/test.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/QRNAS/test 2026-02-14T09:51:47,508 copying build/lib/rna_tools/tools/mq/QRNAS/test/1a9n.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/QRNAS/test 2026-02-14T09:51:47,512 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/Dfire 2026-02-14T09:51:47,513 copying build/lib/rna_tools/tools/mq/Dfire/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/Dfire 2026-02-14T09:51:47,514 copying build/lib/rna_tools/tools/mq/Dfire/Dfire.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/Dfire 2026-02-14T09:51:47,516 copying build/lib/rna_tools/tools/mq/Dfire/rna_mq_dfire.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/Dfire 2026-02-14T09:51:47,517 copying build/lib/rna_tools/tools/mq/Dfire/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/Dfire 2026-02-14T09:51:47,519 copying build/lib/rna_tools/tools/mq/Dfire/test.output -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/Dfire 2026-02-14T09:51:47,521 copying build/lib/rna_tools/tools/mq/rna_mq_collect.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq 2026-02-14T09:51:47,524 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib 2026-02-14T09:51:47,525 copying build/lib/rna_tools/tools/mq/lib/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib 2026-02-14T09:51:47,527 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/wrappers 2026-02-14T09:51:47,528 copying build/lib/rna_tools/tools/mq/lib/wrappers/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/wrappers 2026-02-14T09:51:47,530 copying build/lib/rna_tools/tools/mq/lib/wrappers/base_wrappers.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/wrappers 2026-02-14T09:51:47,533 copying build/lib/rna_tools/tools/mq/lib/wrappers/SubprocessUtils.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/wrappers 2026-02-14T09:51:47,535 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/wrappers/test 2026-02-14T09:51:47,536 copying build/lib/rna_tools/tools/mq/lib/wrappers/test/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/wrappers/test 2026-02-14T09:51:47,538 copying build/lib/rna_tools/tools/mq/lib/wrappers/test/test.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/wrappers/test 2026-02-14T09:51:47,540 copying build/lib/rna_tools/tools/mq/lib/wrappers/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/wrappers 2026-02-14T09:51:47,542 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/timex 2026-02-14T09:51:47,543 copying build/lib/rna_tools/tools/mq/lib/timex/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/timex 2026-02-14T09:51:47,545 copying build/lib/rna_tools/tools/mq/lib/timex/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/timex 2026-02-14T09:51:47,547 copying build/lib/rna_tools/tools/mq/lib/timex/timex.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/timex 2026-02-14T09:51:47,549 copying build/lib/rna_tools/tools/mq/lib/timex/LICENSE -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/timex 2026-02-14T09:51:47,551 copying build/lib/rna_tools/tools/mq/lib/timex/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/timex 2026-02-14T09:51:47,554 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/shellgraphics 2026-02-14T09:51:47,554 copying build/lib/rna_tools/tools/mq/lib/shellgraphics/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/shellgraphics 2026-02-14T09:51:47,556 copying build/lib/rna_tools/tools/mq/lib/shellgraphics/output.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/shellgraphics 2026-02-14T09:51:47,558 copying build/lib/rna_tools/tools/mq/lib/shellgraphics/shellgraphics.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/shellgraphics 2026-02-14T09:51:47,560 copying build/lib/rna_tools/tools/mq/lib/shellgraphics/LICENSE -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/shellgraphics 2026-02-14T09:51:47,563 copying build/lib/rna_tools/tools/mq/lib/shellgraphics/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/shellgraphics 2026-02-14T09:51:47,565 copying build/lib/rna_tools/tools/mq/rna_mq_exp.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq 2026-02-14T09:51:47,567 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/AnalyzeGeometry 2026-02-14T09:51:47,568 copying build/lib/rna_tools/tools/mq/AnalyzeGeometry/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/AnalyzeGeometry 2026-02-14T09:51:47,569 copying build/lib/rna_tools/tools/mq/AnalyzeGeometry/AnalyzeGeometry.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/AnalyzeGeometry 2026-02-14T09:51:47,571 copying build/lib/rna_tools/tools/mq/AnalyzeGeometry/rna_mq_analyzegeometry.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/AnalyzeGeometry 2026-02-14T09:51:47,573 copying build/lib/rna_tools/tools/mq/AnalyzeGeometry/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/AnalyzeGeometry 2026-02-14T09:51:47,575 copying build/lib/rna_tools/tools/mq/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq 2026-02-14T09:51:47,577 copying build/lib/rna_tools/tools/mq/rna_mq_collect_tqdm.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq 2026-02-14T09:51:47,580 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/SimRNA 2026-02-14T09:51:47,581 copying build/lib/rna_tools/tools/mq/SimRNA/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/SimRNA 2026-02-14T09:51:47,583 copying build/lib/rna_tools/tools/mq/SimRNA/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/SimRNA 2026-02-14T09:51:47,584 copying build/lib/rna_tools/tools/mq/SimRNA/SimRNA.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/SimRNA 2026-02-14T09:51:47,587 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/SimRNA/test 2026-02-14T09:51:47,588 copying build/lib/rna_tools/tools/mq/SimRNA/test/1duq_clx_decoy4_clx.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/SimRNA/test 2026-02-14T09:51:47,592 copying build/lib/rna_tools/tools/mq/SimRNA/test/output.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/SimRNA/test 2026-02-14T09:51:47,593 copying build/lib/rna_tools/tools/mq/SimRNA/test/test.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/SimRNA/test 2026-02-14T09:51:47,595 copying build/lib/rna_tools/tools/mq/SimRNA/rna_mq_simrna.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/SimRNA 2026-02-14T09:51:47,598 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNA3DCNN 2026-02-14T09:51:47,599 copying build/lib/rna_tools/tools/mq/RNA3DCNN/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNA3DCNN 2026-02-14T09:51:47,600 copying build/lib/rna_tools/tools/mq/RNA3DCNN/rna_mq_rna3dcnn.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNA3DCNN 2026-02-14T09:51:47,602 copying build/lib/rna_tools/tools/mq/RNA3DCNN/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNA3DCNN 2026-02-14T09:51:47,604 copying build/lib/rna_tools/tools/mq/RNA3DCNN/RNA3DCNN.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNA3DCNN 2026-02-14T09:51:47,606 copying build/lib/rna_tools/tools/mq/RNA3DCNN/test.output -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNA3DCNN 2026-02-14T09:51:47,609 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_sali2dotbracket 2026-02-14T09:51:47,609 copying build/lib/rna_tools/tools/rna_sali2dotbracket/README.MD -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_sali2dotbracket 2026-02-14T09:51:47,611 copying build/lib/rna_tools/tools/rna_sali2dotbracket/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_sali2dotbracket 2026-02-14T09:51:47,613 copying build/lib/rna_tools/tools/rna_sali2dotbracket/rna_sali2dotbracket.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_sali2dotbracket 2026-02-14T09:51:47,615 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_sali2dotbracket/test_data 2026-02-14T09:51:47,616 copying build/lib/rna_tools/tools/rna_sali2dotbracket/test_data/IA1.sali -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_sali2dotbracket/test_data 2026-02-14T09:51:47,619 copying build/lib/rna_tools/tools/rna_sali2dotbracket/test_data/IA1_dotbracket.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_sali2dotbracket/test_data 2026-02-14T09:51:47,623 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-02-14T09:51:47,624 copying build/lib/rna_tools/tools/rna_rosetta/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-02-14T09:51:47,626 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_extract.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-02-14T09:51:47,627 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_min.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-02-14T09:51:47,630 copying build/lib/rna_tools/tools/rna_rosetta/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-02-14T09:51:47,631 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_silent_random.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-02-14T09:51:47,633 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_head.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-02-14T09:51:47,635 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_extract_lowscore_decoys.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-02-14T09:51:47,636 copying build/lib/rna_tools/tools/rna_rosetta/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-02-14T09:51:47,638 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_easy_cat.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-02-14T09:51:47,640 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_check_progress.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-02-14T09:51:47,642 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data 2026-02-14T09:51:47,643 copying build/lib/rna_tools/tools/rna_rosetta/test_data/a04.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data 2026-02-14T09:51:47,645 copying build/lib/rna_tools/tools/rna_rosetta/test_data/a99.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data 2026-02-14T09:51:47,647 copying build/lib/rna_tools/tools/rna_rosetta/test_data/selected.out.rand2.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data 2026-02-14T09:51:47,650 copying build/lib/rna_tools/tools/rna_rosetta/test_data/S_000027_058.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data 2026-02-14T09:51:47,653 copying build/lib/rna_tools/tools/rna_rosetta/test_data/S_000035_003.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data 2026-02-14T09:51:47,657 copying build/lib/rna_tools/tools/rna_rosetta/test_data/selected.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data 2026-02-14T09:51:47,668 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data/tl 2026-02-14T09:51:47,669 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tl/qsubMINI -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data/tl 2026-02-14T09:51:47,671 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tl/ss.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data/tl 2026-02-14T09:51:47,672 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tl/CMDLINES -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data/tl 2026-02-14T09:51:47,674 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tl/helix0.fasta -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data/tl 2026-02-14T09:51:47,676 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tl/seq.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data/tl 2026-02-14T09:51:47,678 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tl/tl.params -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data/tl 2026-02-14T09:51:47,679 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tl/helix0.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data/tl 2026-02-14T09:51:47,696 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tl/input.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data/tl 2026-02-14T09:51:47,698 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tl/tl.fasta -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data/tl 2026-02-14T09:51:47,699 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tl/helix0.params -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data/tl 2026-02-14T09:51:47,701 copying build/lib/rna_tools/tools/rna_rosetta/test_data/selected.out.rand5.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data 2026-02-14T09:51:47,715 copying build/lib/rna_tools/tools/rna_rosetta/test_data/ade.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data 2026-02-14T09:51:47,717 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tetraloop.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data 2026-02-14T09:51:47,719 copying build/lib/rna_tools/tools/rna_rosetta/test_data/S_000020_024.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data 2026-02-14T09:51:47,722 copying build/lib/rna_tools/tools/rna_rosetta/test_data/S_000005_032.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data 2026-02-14T09:51:47,725 copying build/lib/rna_tools/tools/rna_rosetta/test_data/silent_sort.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data 2026-02-14T09:51:47,730 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_get_score.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-02-14T09:51:47,732 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_silent_file_sort_and_select.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-02-14T09:51:47,734 copying build/lib/rna_tools/tools/rna_rosetta/test.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-02-14T09:51:47,736 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_run.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-02-14T09:51:47,738 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_silent_split.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-02-14T09:51:47,740 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_n.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-02-14T09:51:47,742 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_cluster.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-02-14T09:51:47,744 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-02-14T09:51:47,745 copying build/lib/rna_tools/tools/PyMOL4RNA/PyMOL4RNA.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-02-14T09:51:47,750 copying build/lib/rna_tools/tools/PyMOL4RNA/rnapuzzles.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-02-14T09:51:47,751 copying build/lib/rna_tools/tools/PyMOL4RNA/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-02-14T09:51:47,753 copying build/lib/rna_tools/tools/PyMOL4RNA/code_for_color_spl.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-02-14T09:51:47,755 copying build/lib/rna_tools/tools/PyMOL4RNA/PyMOL4Spliceosome.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-02-14T09:51:47,758 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/doc 2026-02-14T09:51:47,759 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/pdb.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/doc 2026-02-14T09:51:47,763 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/rna.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/doc 2026-02-14T09:51:47,767 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/rs.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/doc 2026-02-14T09:51:47,771 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/pucker.jpg -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/doc 2026-02-14T09:51:47,776 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/ss.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/doc 2026-02-14T09:51:47,782 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/run.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/doc 2026-02-14T09:51:47,815 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/p.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/doc 2026-02-14T09:51:47,820 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/ion.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/doc 2026-02-14T09:51:47,825 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/pymol4spliceosome.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/doc 2026-02-14T09:51:47,856 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/spl.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/doc 2026-02-14T09:51:47,887 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/clarna.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/doc 2026-02-14T09:51:47,891 copying build/lib/rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL-2020.ipynb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-02-14T09:51:47,895 copying build/lib/rna_tools/tools/PyMOL4RNA/external_flatten_object.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-02-14T09:51:47,897 copying build/lib/rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-02-14T09:51:47,900 copying build/lib/rna_tools/tools/PyMOL4RNA/code_for_spl.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-02-14T09:51:47,902 copying build/lib/rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL.xlsx -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-02-14T09:51:47,905 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/test_data 2026-02-14T09:51:47,906 copying build/lib/rna_tools/tools/PyMOL4RNA/test_data/5k7c_clean.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/test_data 2026-02-14T09:51:47,913 copying build/lib/rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-02-14T09:51:47,915 copying build/lib/rna_tools/tools/PyMOL4RNA/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-02-14T09:51:47,917 copying build/lib/rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL-2022.ipynb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-02-14T09:51:47,921 copying build/lib/rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL.ipynb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-02-14T09:51:47,925 copying build/lib/rna_tools/tools/PyMOL4RNA/rna_draw_edges.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-02-14T09:51:47,928 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/libs 2026-02-14T09:51:47,930 copying build/lib/rna_tools/tools/PyMOL4RNA/libs/get_raw_distances.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/libs 2026-02-14T09:51:47,932 copying build/lib/rna_tools/tools/PyMOL4RNA/libs/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/libs 2026-02-14T09:51:47,934 copying build/lib/rna_tools/tools/PyMOL4RNA/libs/calc_gdt.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/libs 2026-02-14T09:51:47,936 copying build/lib/rna_tools/tools/PyMOL4RNA/libs/colorbyrmsd.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/libs 2026-02-14T09:51:47,939 copying build/lib/rna_tools/tools/PyMOL4RNA/libs/show_contacts.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/libs 2026-02-14T09:51:47,941 copying build/lib/rna_tools/tools/PyMOL4RNA/libs/pymol_daslab.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/libs 2026-02-14T09:51:47,944 copying build/lib/rna_tools/tools/PyMOL4RNA/libs/pucker.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/libs 2026-02-14T09:51:47,947 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_bp 2026-02-14T09:51:47,949 copying build/lib/rna_tools/tools/rna_bp/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_bp 2026-02-14T09:51:47,950 copying build/lib/rna_tools/tools/rna_bp/base_pair.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_bp 2026-02-14T09:51:47,953 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_helix_vis 2026-02-14T09:51:47,955 copying build/lib/rna_tools/tools/rna_helix_vis/rna_helix_vis.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_helix_vis 2026-02-14T09:51:47,957 copying build/lib/rna_tools/tools/rna_helix_vis/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_helix_vis 2026-02-14T09:51:47,959 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_helix_vis/doc 2026-02-14T09:51:47,960 copying build/lib/rna_tools/tools/rna_helix_vis/doc/rna_helix_vis.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_helix_vis/doc 2026-02-14T09:51:47,967 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_helix_vis/test_data 2026-02-14T09:51:47,968 copying build/lib/rna_tools/tools/rna_helix_vis/test_data/rp14.ss -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_helix_vis/test_data 2026-02-14T09:51:47,970 copying build/lib/rna_tools/tools/rna_helix_vis/test_data/rp14_farna_eloop.out.1.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_helix_vis/test_data 2026-02-14T09:51:47,975 copying build/lib/rna_tools/tools/rna_helix_vis/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_helix_vis 2026-02-14T09:51:47,977 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix 2026-02-14T09:51:47,978 copying build/lib/rna_tools/tools/pdb_formatix/test-quick-and-dirty.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix 2026-02-14T09:51:47,980 copying build/lib/rna_tools/tools/pdb_formatix/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix 2026-02-14T09:51:47,981 copying build/lib/rna_tools/tools/pdb_formatix/rebuilder.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix 2026-02-14T09:51:47,983 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-02-14T09:51:47,984 copying build/lib/rna_tools/tools/pdb_formatix/test/protein.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-02-14T09:51:47,987 copying build/lib/rna_tools/tools/pdb_formatix/test/test_nmr.in -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-02-14T09:51:47,999 copying build/lib/rna_tools/tools/pdb_formatix/test/sample_for_distance.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-02-14T09:51:48,001 copying build/lib/rna_tools/tools/pdb_formatix/test/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-02-14T09:51:48,003 copying build/lib/rna_tools/tools/pdb_formatix/test/test_nmr_atom.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-02-14T09:51:48,013 copying build/lib/rna_tools/tools/pdb_formatix/test/test1.in -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-02-14T09:51:48,015 copying build/lib/rna_tools/tools/pdb_formatix/test/1xjrA_M1.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-02-14T09:51:48,019 copying build/lib/rna_tools/tools/pdb_formatix/test/1kxkA_rasp.native.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-02-14T09:51:48,024 copying build/lib/rna_tools/tools/pdb_formatix/test/1xjrA_M1+ter.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-02-14T09:51:48,028 copying build/lib/rna_tools/tools/pdb_formatix/test/test0.in -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-02-14T09:51:48,031 copying build/lib/rna_tools/tools/pdb_formatix/test/test0.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-02-14T09:51:48,036 copying build/lib/rna_tools/tools/pdb_formatix/test/test0_3to1.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-02-14T09:51:48,039 copying build/lib/rna_tools/tools/pdb_formatix/test/test.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-02-14T09:51:48,042 copying build/lib/rna_tools/tools/pdb_formatix/test/test1.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-02-14T09:51:48,044 copying build/lib/rna_tools/tools/pdb_formatix/test/test_nmr.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-02-14T09:51:48,047 copying build/lib/rna_tools/tools/pdb_formatix/PDBFile.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix 2026-02-14T09:51:48,050 copying build/lib/rna_tools/tools/pdb_formatix/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix 2026-02-14T09:51:48,052 copying build/lib/rna_tools/tools/pdb_formatix/SingleLineUtils.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix 2026-02-14T09:51:48,054 copying build/lib/rna_tools/tools/pdb_formatix/RosettaUtils.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix 2026-02-14T09:51:48,056 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_get_restraints 2026-02-14T09:51:48,056 copying build/lib/rna_tools/tools/rna_get_restraints/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_get_restraints 2026-02-14T09:51:48,058 copying build/lib/rna_tools/tools/rna_get_restraints/rna_simrna_get_restraints_vs_all.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_get_restraints 2026-02-14T09:51:48,060 copying build/lib/rna_tools/tools/rna_get_restraints/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_get_restraints 2026-02-14T09:51:48,062 copying build/lib/rna_tools/tools/rna_get_restraints/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_get_restraints 2026-02-14T09:51:48,064 copying build/lib/rna_tools/tools/rna_get_restraints/rna_farna_get_restraints_vs_all.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_get_restraints 2026-02-14T09:51:48,066 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/df 2026-02-14T09:51:48,067 copying build/lib/rna_tools/tools/df/rna_df_concat.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df 2026-02-14T09:51:48,069 copying build/lib/rna_tools/tools/df/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df 2026-02-14T09:51:48,071 copying build/lib/rna_tools/tools/df/rna_df_merge_two.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df 2026-02-14T09:51:48,073 copying build/lib/rna_tools/tools/df/rna_df_merge.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df 2026-02-14T09:51:48,076 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/df/test_data 2026-02-14T09:51:48,077 copying build/lib/rna_tools/tools/df/test_data/rna_df_merge_on.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df/test_data 2026-02-14T09:51:48,079 copying build/lib/rna_tools/tools/df/test_data/min_4.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df/test_data 2026-02-14T09:51:48,081 copying build/lib/rna_tools/tools/df/test_data/min_3.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df/test_data 2026-02-14T09:51:48,082 copying build/lib/rna_tools/tools/df/test_data/rna_df_merge.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df/test_data 2026-02-14T09:51:48,084 copying build/lib/rna_tools/tools/df/test_data/rna_df_concat.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df/test_data 2026-02-14T09:51:48,086 copying build/lib/rna_tools/tools/df/test_data/d8.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df/test_data 2026-02-14T09:51:48,088 copying build/lib/rna_tools/tools/df/test_data/d3.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df/test_data 2026-02-14T09:51:48,090 copying build/lib/rna_tools/tools/df/test_data/cgc_rmsd.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df/test_data 2026-02-14T09:51:48,091 copying build/lib/rna_tools/tools/df/test_data/cga_rmsd.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df/test_data 2026-02-14T09:51:48,093 copying build/lib/rna_tools/tools/df/test_data/min_2.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df/test_data 2026-02-14T09:51:48,095 copying build/lib/rna_tools/tools/df/rna_df_merge_on.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df 2026-02-14T09:51:48,097 copying build/lib/rna_tools/tools/df/rna_df_csv_sort.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df 2026-02-14T09:51:48,099 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_drawing 2026-02-14T09:51:48,100 copying build/lib/rna_tools/tools/pymol_drawing/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_drawing 2026-02-14T09:51:48,102 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_drawing/docs 2026-02-14T09:51:48,103 copying build/lib/rna_tools/tools/pymol_drawing/docs/draw_vector.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_drawing/docs 2026-02-14T09:51:48,106 copying build/lib/rna_tools/tools/pymol_drawing/docs/draw_circle.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_drawing/docs 2026-02-14T09:51:48,109 copying build/lib/rna_tools/tools/pymol_drawing/docs/draw_dist.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_drawing/docs 2026-02-14T09:51:48,113 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_drawing/test_data 2026-02-14T09:51:48,114 copying build/lib/rna_tools/tools/pymol_drawing/test_data/CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_drawing/test_data 2026-02-14T09:51:48,117 copying build/lib/rna_tools/tools/pymol_drawing/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_drawing 2026-02-14T09:51:48,118 copying build/lib/rna_tools/tools/pymol_drawing/pymol_drawing.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_drawing 2026-02-14T09:51:48,121 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb 2026-02-14T09:51:48,122 copying build/lib/rna_tools/tools/diffpdb/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb 2026-02-14T09:51:48,124 copying build/lib/rna_tools/tools/diffpdb/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb 2026-02-14T09:51:48,126 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/doc 2026-02-14T09:51:48,127 copying build/lib/rna_tools/tools/diffpdb/doc/missing-atoms.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/doc 2026-02-14T09:51:48,133 copying build/lib/rna_tools/tools/diffpdb/doc/missing-op3.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/doc 2026-02-14T09:51:48,139 copying build/lib/rna_tools/tools/diffpdb/doc/screenshot2.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/doc 2026-02-14T09:51:48,143 copying build/lib/rna_tools/tools/diffpdb/doc/atom-variants.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/doc 2026-02-14T09:51:48,145 copying build/lib/rna_tools/tools/diffpdb/doc/diffpdb_osx_diffmerge.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/doc 2026-02-14T09:51:48,156 copying build/lib/rna_tools/tools/diffpdb/doc/screenshot.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/doc 2026-02-14T09:51:48,160 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/output 2026-02-14T09:51:48,161 copying build/lib/rna_tools/tools/diffpdb/output/2_str1_vs_str2.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/output 2026-02-14T09:51:48,163 copying build/lib/rna_tools/tools/diffpdb/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb 2026-02-14T09:51:48,166 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data 2026-02-14T09:51:48,167 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data/1 2026-02-14T09:51:48,168 copying build/lib/rna_tools/tools/diffpdb/test_data/1/1kxkA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data/1 2026-02-14T09:51:48,172 copying build/lib/rna_tools/tools/diffpdb/test_data/1/1kxkA_M1.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data/1 2026-02-14T09:51:48,176 copying build/lib/rna_tools/tools/diffpdb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clx.pdb.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data 2026-02-14T09:51:48,179 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data/4 2026-02-14T09:51:48,180 copying build/lib/rna_tools/tools/diffpdb/test_data/4/1duq.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data/4 2026-02-14T09:51:48,183 copying build/lib/rna_tools/tools/diffpdb/test_data/4/1duq_decoy0171_amb_clx.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data/4 2026-02-14T09:51:48,186 copying build/lib/rna_tools/tools/diffpdb/test_data/5k7c_clean_onechain_renumber_as_puzzle_srr_min.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data 2026-02-14T09:51:48,193 copying build/lib/rna_tools/tools/diffpdb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clx.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data 2026-02-14T09:51:48,195 copying build/lib/rna_tools/tools/diffpdb/test_data/pistol_thrs0.50A_clust272-000001_AA.pdb.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data 2026-02-14T09:51:48,198 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data/3.ident 2026-02-14T09:51:48,199 copying build/lib/rna_tools/tools/diffpdb/test_data/3.ident/str1.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data/3.ident 2026-02-14T09:51:48,201 copying build/lib/rna_tools/tools/diffpdb/test_data/3.ident/str2.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data/3.ident 2026-02-14T09:51:48,203 copying build/lib/rna_tools/tools/diffpdb/test_data/5k7c_clean_onechain_renumber_as_puzzle_srr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data 2026-02-14T09:51:48,209 copying build/lib/rna_tools/tools/diffpdb/test_data/5k7c_clean_onechain_renumber_as_puzzle_srr.pdb.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data 2026-02-14T09:51:48,211 copying build/lib/rna_tools/tools/diffpdb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data 2026-02-14T09:51:48,214 copying build/lib/rna_tools/tools/diffpdb/test_data/pistol_thrs0.50A_clust272-000001_AA_min.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data 2026-02-14T09:51:48,219 copying build/lib/rna_tools/tools/diffpdb/test_data/pistol_thrs0.50A_clust272-000001_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data 2026-02-14T09:51:48,225 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data/2 2026-02-14T09:51:48,226 copying build/lib/rna_tools/tools/diffpdb/test_data/2/str1.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data/2 2026-02-14T09:51:48,227 copying build/lib/rna_tools/tools/diffpdb/test_data/2/str2.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data/2 2026-02-14T09:51:48,229 copying build/lib/rna_tools/tools/diffpdb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0.pdb.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data 2026-02-14T09:51:48,232 copying build/lib/rna_tools/tools/diffpdb/diffpdb.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb 2026-02-14T09:51:48,234 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/lib 2026-02-14T09:51:48,235 copying build/lib/rna_tools/tools/diffpdb/lib/diff2html.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/lib 2026-02-14T09:51:48,238 copying build/lib/rna_tools/tools/diffpdb/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb 2026-02-14T09:51:48,240 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_binding_affinity 2026-02-14T09:51:48,241 copying build/lib/rna_tools/tools/rna_binding_affinity/rna_dG2kd.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_binding_affinity 2026-02-14T09:51:48,243 copying build/lib/rna_tools/tools/rna_binding_affinity/rna_kd2pkd.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_binding_affinity 2026-02-14T09:51:48,244 copying build/lib/rna_tools/tools/rna_binding_affinity/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_binding_affinity 2026-02-14T09:51:48,246 copying build/lib/rna_tools/tools/rna_binding_affinity/rna_pkd2kd.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_binding_affinity 2026-02-14T09:51:48,248 copying build/lib/rna_tools/tools/rna_binding_affinity/rna_kd2dG.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_binding_affinity 2026-02-14T09:51:48,250 copying build/lib/rna_tools/tools/rna_binding_affinity/rna_pkd2dG.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_binding_affinity 2026-02-14T09:51:48,252 copying build/lib/rna_tools/shell_rc.sh -> build/bdist.linux-armv7l/wheel/rna_tools 2026-02-14T09:51:48,254 copying build/lib/rna_tools/BlastPDB.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-02-14T09:51:48,255 copying build/lib/rna_tools/rna_calc_fenergy.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-02-14T09:51:48,257 copying build/lib/rna_tools/update_readme.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-02-14T09:51:48,259 copying build/lib/rna_tools/stats.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-02-14T09:51:48,261 copying build/lib/rna_tools/pytest.ini -> build/bdist.linux-armv7l/wheel/rna_tools 2026-02-14T09:51:48,263 copying build/lib/rna_tools/rna_standardize.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-02-14T09:51:48,266 copying build/lib/rna_tools/RfamSearch.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-02-14T09:51:48,268 creating build/bdist.linux-armv7l/wheel/tests 2026-02-14T09:51:48,269 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests 2026-02-14T09:51:48,271 copying build/lib/tests/test_module.py -> build/bdist.linux-armv7l/wheel/tests 2026-02-14T09:51:48,272 running install_egg_info 2026-02-14T09:51:48,286 Copying rna_tools.egg-info to build/bdist.linux-armv7l/wheel/rna_tools-3.27.1-py3.11.egg-info 2026-02-14T09:51:48,299 running install_scripts 2026-02-14T09:51:48,302 creating build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data 2026-02-14T09:51:48,303 creating build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,304 copying build/scripts-3.11/rna_pdb_merge_structure_with_fragments.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,307 copying build/scripts-3.11/rna_align_coverage.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,309 copying build/scripts-3.11/select_seq_fromBLAStn_6outfm.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,310 copying build/scripts-3.11/rna_plot_density.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,312 copying build/scripts-3.11/pymol_color_by_conserv.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,314 copying build/scripts-3.11/rna_refinement.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,316 copying build/scripts-3.11/rna_mq_farfar2.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,318 copying build/scripts-3.11/rna_cif2pdb.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,320 copying build/scripts-3.11/rna_align_fetch_seed.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,322 copying build/scripts-3.11/rna_plot_dendogram.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,324 copying build/scripts-3.11/rna_test_cuda.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,325 copying build/scripts-3.11/rna_simrna_lowest.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,327 copying build/scripts-3.11/rna_calc_rmsd.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,330 copying build/scripts-3.11/translate.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,332 copying build/scripts-3.11/rna_pdb_fetch.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,334 copying build/scripts-3.11/rna_mq_remote.sh -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,336 copying build/scripts-3.11/rna_rosetta_extract.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,338 copying build/scripts-3.11/rna_x3dna.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,340 copying build/scripts-3.11/rna_mq_eSCORE.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,342 copying build/scripts-3.11/rna_align_foldability.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,345 copying build/scripts-3.11/rna_helix_vis.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,347 copying build/scripts-3.11/rna_calc_evo_rmsd.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,349 copying build/scripts-3.11/rna_rosetta_min.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,352 copying build/scripts-3.11/rna_ss_get_bps.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,353 copying build/scripts-3.11/rna_pdb_tools.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,357 copying build/scripts-3.11/rna_traj_range.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,359 copying build/scripts-3.11/rna_pdb_merge_into_one.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,361 copying build/scripts-3.11/rna_alignment_r2r.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,362 copying build/scripts-3.11/rna_dot2ct.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,364 copying build/scripts-3.11/rna_pairs2SimRNArestrs.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,366 copying build/scripts-3.11/rna_sali2dotbracket.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,369 copying build/scripts-3.11/rna_mq_rna3dcnn.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,370 copying build/scripts-3.11/rna_mq_clashscore.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,372 copying build/scripts-3.11/rna_simrna_cluster.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,374 copying build/scripts-3.11/trx_mutagen_allvsall.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,375 copying build/scripts-3.11/rna_gromacs_ready.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,377 copying build/scripts-3.11/rna_pdb_edit_occupancy_bfactor.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,379 copying build/scripts-3.11/rna_calc_rmsd_biopython.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,382 copying build/scripts-3.11/rna_traj_n.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,384 copying build/scripts-3.11/rna_calc_inf.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,386 copying build/scripts-3.11/rna_mq_wx_collect.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,388 copying build/scripts-3.11/rna_traj_nohetm.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,389 copying build/scripts-3.11/rna_mq_farna.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,391 copying build/scripts-3.11/rna_prediction_significance.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,393 copying build/scripts-3.11/rna_torsions.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,395 copying build/scripts-3.11/rna_dG2kd.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,397 copying build/scripts-3.11/rna_simrna_extract.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,399 copying build/scripts-3.11/rna_pk_simrna_to_one_line.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,401 copying build/scripts-3.11/rna_rosetta_silent_random.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,403 copying build/scripts-3.11/rna_md.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,405 copying build/scripts-3.11/rna_calc_rmsd_multi_targets.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,407 copying build/scripts-3.11/rna_align_strip_stk.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,409 copying build/scripts-3.11/rna_pdb_inspect.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,410 copying build/scripts-3.11/rna_pdb_fetch_header.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,412 copying build/scripts-3.11/rna_df_concat.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,414 copying build/scripts-3.11/rna_rosetta_head.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,416 copying build/scripts-3.11/triplexibility2.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,419 copying build/scripts-3.11/rna_align_fetch_cm.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,420 copying build/scripts-3.11/rna_dict2fasta.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,422 copying build/scripts-3.11/rna_kd2pkd.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,424 copying build/scripts-3.11/clarna.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,427 copying build/scripts-3.11/rna_workflow.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,429 copying build/scripts-3.11/rna_align_find_core.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,431 copying build/scripts-3.11/rna_rosetta_extract_lowscore_decoys.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,432 copying build/scripts-3.11/trx_score.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,434 copying build/scripts-3.11/pymol_preview_install.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,436 copying build/scripts-3.11/rna_mq_analyzegeometry.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,437 copying build/scripts-3.11/rna_ec2x.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,439 copying build/scripts-3.11/rna_mq_dfire.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,441 copying build/scripts-3.11/rna_align_get_ss_from_stk.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,442 copying build/scripts-3.11/rna_plot_boxplotlike.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,445 copying build/scripts-3.11/rna_mq_rsRNASP.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,446 copying build/scripts-3.11/rna_clarna_compare.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,449 copying build/scripts-3.11/rna_secondary_structure_prediction.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,451 copying build/scripts-3.11/rna_mq_plot.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,452 copying build/scripts-3.11/rna_mq_score.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,455 copying build/scripts-3.11/pdbs_measure_atom_dists.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,457 copying build/scripts-3.11/rna_plot_alignment_bounds.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,460 copying build/scripts-3.11/rna_filter.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,462 copying build/scripts-3.11/trx_score_onCol.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,464 copying build/scripts-3.11/rna_tools_demo.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,466 copying build/scripts-3.11/rna_plot_heatmap.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,468 copying build/scripts-3.11/rna_pairs_diff.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,469 copying build/scripts-3.11/rna_pdb_replace.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,471 copying build/scripts-3.11/rna_df_merge_two.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,474 copying build/scripts-3.11/rna_rosetta_check_progress.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,476 copying build/scripts-3.11/rna_calc_rmsd_all_vs_all.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,478 copying build/scripts-3.11/rna_calc_hbonds.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,480 copying build/scripts-3.11/rna_align_sto2csv.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,482 copying build/scripts-3.11/rna_simrnaweb_download_job.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,484 copying build/scripts-3.11/rna_plot_hist.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,486 copying build/scripts-3.11/rna_df_merge.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,488 copying build/scripts-3.11/rna_pkd2kd.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,490 copying build/scripts-3.11/rna_alignment_process_id.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,492 copying build/scripts-3.11/rna_tools_which.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,493 copying build/scripts-3.11/rna_mq_collect.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,496 copying build/scripts-3.11/rna_minimize.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,498 copying build/scripts-3.11/trx_score_allvsall.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,499 copying build/scripts-3.11/rna_df_merge_on.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,501 copying build/scripts-3.11/diffpdb.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,503 copying build/scripts-3.11/rna_df_csv_sort.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,505 copying build/scripts-3.11/rna_rosetta_get_score.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,507 copying build/scripts-3.11/rna_alignment_get_species.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,509 copying build/scripts-3.11/rna_rosetta_silent_file_sort_and_select.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,511 copying build/scripts-3.11/rna_mq_exp.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,513 copying build/scripts-3.11/triplexibility.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,516 copying build/scripts-3.11/rna_kd2dG.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,517 copying build/scripts-3.11/rna_mq_simrna.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,519 copying build/scripts-3.11/renum_pdb_to_aln.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,521 copying build/scripts-3.11/rna_calc_fenergy.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,523 copying build/scripts-3.11/rna_clarna2graph.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,525 copying build/scripts-3.11/rna_download_rfam.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,527 copying build/scripts-3.11/rna_pkd2dG.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,529 copying build/scripts-3.11/rna_ok -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,530 copying build/scripts-3.11/rna_rosetta_run.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,533 copying build/scripts-3.11/rna_clarna_run.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,536 copying build/scripts-3.11/rna_rosetta_silent_split.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,538 copying build/scripts-3.11/rna_rosetta_n.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,540 copying build/scripts-3.11/trx_mutagen.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,542 copying build/scripts-3.11/rna_mq_rasp.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,543 copying build/scripts-3.11/rna_clarna_app.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,546 copying build/scripts-3.11/rna_standardize.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,548 copying build/scripts-3.11/reverse.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,549 copying build/scripts-3.11/rna_clanstix.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,552 copying build/scripts-3.11/random_assignment_of_nucleotides.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,554 copying build/scripts-3.11/rna_mq_rnakb.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,556 copying build/scripts-3.11/rna_add_chain.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,558 copying build/scripts-3.11/rna_ok_mail.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,559 copying build/scripts-3.11/rna_draw_edges.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,561 copying build/scripts-3.11/rna_align_seq_to_alignment.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,563 copying build/scripts-3.11/rna_align_find_seq_in_alignment.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,565 copying build/scripts-3.11/rna_rosetta_cluster.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,567 copying build/scripts-3.11/rna_calc_rmsd_trafl.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,569 copying build/scripts-3.11/rna_cal_rmsd_trafl_plot.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,571 copying build/scripts-3.11/pymol_preview_generator.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts 2026-02-14T09:51:48,573 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_pdb_merge_structure_with_fragments.py to 755 2026-02-14T09:51:48,573 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_align_coverage.py to 755 2026-02-14T09:51:48,574 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/select_seq_fromBLAStn_6outfm.py to 755 2026-02-14T09:51:48,574 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_plot_density.py to 755 2026-02-14T09:51:48,575 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/pymol_color_by_conserv.py to 755 2026-02-14T09:51:48,575 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_refinement.py to 755 2026-02-14T09:51:48,576 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_mq_farfar2.py to 755 2026-02-14T09:51:48,577 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_cif2pdb.py to 755 2026-02-14T09:51:48,577 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_align_fetch_seed.py to 755 2026-02-14T09:51:48,578 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_plot_dendogram.py to 755 2026-02-14T09:51:48,578 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_test_cuda.py to 755 2026-02-14T09:51:48,579 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_simrna_lowest.py to 755 2026-02-14T09:51:48,580 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_calc_rmsd.py to 755 2026-02-14T09:51:48,580 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/translate.py to 755 2026-02-14T09:51:48,581 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_pdb_fetch.py to 755 2026-02-14T09:51:48,581 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_mq_remote.sh to 755 2026-02-14T09:51:48,582 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_rosetta_extract.py to 755 2026-02-14T09:51:48,583 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_x3dna.py to 755 2026-02-14T09:51:48,583 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_mq_eSCORE.py to 755 2026-02-14T09:51:48,583 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_align_foldability.py to 755 2026-02-14T09:51:48,584 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_helix_vis.py to 755 2026-02-14T09:51:48,584 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_calc_evo_rmsd.py to 755 2026-02-14T09:51:48,585 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_rosetta_min.py to 755 2026-02-14T09:51:48,585 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_ss_get_bps.py to 755 2026-02-14T09:51:48,586 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_pdb_tools.py to 755 2026-02-14T09:51:48,586 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_traj_range.py to 755 2026-02-14T09:51:48,587 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_pdb_merge_into_one.py to 755 2026-02-14T09:51:48,587 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_alignment_r2r.py to 755 2026-02-14T09:51:48,588 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_dot2ct.py to 755 2026-02-14T09:51:48,588 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_pairs2SimRNArestrs.py to 755 2026-02-14T09:51:48,589 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_sali2dotbracket.py to 755 2026-02-14T09:51:48,589 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_mq_rna3dcnn.py to 755 2026-02-14T09:51:48,590 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_mq_clashscore.py to 755 2026-02-14T09:51:48,590 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_simrna_cluster.py to 755 2026-02-14T09:51:48,591 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/trx_mutagen_allvsall.py to 755 2026-02-14T09:51:48,591 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_gromacs_ready.py to 755 2026-02-14T09:51:48,592 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_pdb_edit_occupancy_bfactor.py to 755 2026-02-14T09:51:48,593 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_calc_rmsd_biopython.py to 755 2026-02-14T09:51:48,593 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_traj_n.py to 755 2026-02-14T09:51:48,594 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_calc_inf.py to 755 2026-02-14T09:51:48,594 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_mq_wx_collect.py to 755 2026-02-14T09:51:48,595 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_traj_nohetm.py to 755 2026-02-14T09:51:48,595 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_mq_farna.py to 755 2026-02-14T09:51:48,596 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_prediction_significance.py to 755 2026-02-14T09:51:48,596 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_torsions.py to 755 2026-02-14T09:51:48,597 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_dG2kd.py to 755 2026-02-14T09:51:48,597 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_simrna_extract.py to 755 2026-02-14T09:51:48,598 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_pk_simrna_to_one_line.py to 755 2026-02-14T09:51:48,599 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_rosetta_silent_random.py to 755 2026-02-14T09:51:48,599 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_md.py to 755 2026-02-14T09:51:48,599 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_calc_rmsd_multi_targets.py to 755 2026-02-14T09:51:48,600 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_align_strip_stk.py to 755 2026-02-14T09:51:48,600 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_pdb_inspect.py to 755 2026-02-14T09:51:48,601 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_pdb_fetch_header.py to 755 2026-02-14T09:51:48,601 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_df_concat.py to 755 2026-02-14T09:51:48,602 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_rosetta_head.py to 755 2026-02-14T09:51:48,602 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/triplexibility2.py to 755 2026-02-14T09:51:48,603 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_align_fetch_cm.py to 755 2026-02-14T09:51:48,603 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_dict2fasta.py to 755 2026-02-14T09:51:48,604 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_kd2pkd.py to 755 2026-02-14T09:51:48,604 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/clarna.py to 755 2026-02-14T09:51:48,605 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_workflow.py to 755 2026-02-14T09:51:48,605 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_align_find_core.py to 755 2026-02-14T09:51:48,606 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_rosetta_extract_lowscore_decoys.py to 755 2026-02-14T09:51:48,606 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/trx_score.py to 755 2026-02-14T09:51:48,607 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/pymol_preview_install.py to 755 2026-02-14T09:51:48,607 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_mq_analyzegeometry.py to 755 2026-02-14T09:51:48,608 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_ec2x.py to 755 2026-02-14T09:51:48,608 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_mq_dfire.py to 755 2026-02-14T09:51:48,609 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_align_get_ss_from_stk.py to 755 2026-02-14T09:51:48,609 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_plot_boxplotlike.py to 755 2026-02-14T09:51:48,610 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_mq_rsRNASP.py to 755 2026-02-14T09:51:48,610 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_clarna_compare.py to 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build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/rna_cal_rmsd_trafl_plot.py to 755 2026-02-14T09:51:48,646 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.data/scripts/pymol_preview_generator.py to 755 2026-02-14T09:51:48,649 creating build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.dist-info/WHEEL 2026-02-14T09:51:48,651 creating '/tmp/pip-wheel-vf1ul7ba/.tmp-svzqz4r9/rna_tools-3.27.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-02-14T09:51:48,654 adding 'rna_tools/BlastPDB.py' 2026-02-14T09:51:48,655 adding 'rna_tools/RfamSearch.py' 2026-02-14T09:51:48,657 adding 'rna_tools/SecondaryStructure.py' 2026-02-14T09:51:48,660 adding 'rna_tools/Seq.py' 2026-02-14T09:51:48,661 adding 'rna_tools/__init__.py' 2026-02-14T09:51:48,663 adding 'rna_tools/_version.py' 2026-02-14T09:51:48,664 adding 'rna_tools/pytest.ini' 2026-02-14T09:51:48,712 adding 'rna_tools/rchie.png' 2026-02-14T09:51:48,716 adding 'rna_tools/rna_calc_fenergy.py' 2026-02-14T09:51:48,718 adding 'rna_tools/rna_cif2pdb.py' 2026-02-14T09:51:48,719 adding 'rna_tools/rna_dot2ct.py' 2026-02-14T09:51:48,720 adding 'rna_tools/rna_pdb_fetch.py' 2026-02-14T09:51:48,722 adding 'rna_tools/rna_pdb_fetch_header.py' 2026-02-14T09:51:48,723 adding 'rna_tools/rna_pdb_inspect.py' 2026-02-14T09:51:48,724 adding 'rna_tools/rna_pdb_replace.py' 2026-02-14T09:51:48,726 adding 'rna_tools/rna_pdb_seq.py' 2026-02-14T09:51:48,731 adding 'rna_tools/rna_pdb_tools.py' 2026-02-14T09:51:48,732 adding 'rna_tools/rna_secondary_structure_prediction.py' 2026-02-14T09:51:48,734 adding 'rna_tools/rna_simrnaweb_download_job.py' 2026-02-14T09:51:48,736 adding 'rna_tools/rna_standardize.py' 2026-02-14T09:51:48,737 adding 'rna_tools/rna_tools_config.py' 2026-02-14T09:51:48,747 adding 'rna_tools/rna_tools_lib.py' 2026-02-14T09:51:48,749 adding 'rna_tools/rna_tools_test_all.py' 2026-02-14T09:51:48,750 adding 'rna_tools/rna_torsions.py' 2026-02-14T09:51:48,752 adding 'rna_tools/shell_rc.sh' 2026-02-14T09:51:48,753 adding 'rna_tools/stats.py' 2026-02-14T09:51:48,754 adding 'rna_tools/test.sh' 2026-02-14T09:51:48,755 adding 'rna_tools/update_readme.py' 2026-02-14T09:51:48,768 adding 'rna_tools/data/260c8ff6-f24e-4eff-9760-1831407fc770_ALL_thrs5.30A_clust01-000001_AA.pdb' 2026-02-14T09:51:48,770 adding 'rna_tools/data/A.pdb' 2026-02-14T09:51:48,772 adding 'rna_tools/data/ACGU.pdb' 2026-02-14T09:51:48,773 adding 'rna_tools/data/C.pdb' 2026-02-14T09:51:48,774 adding 'rna_tools/data/G.pdb' 2026-02-14T09:51:48,775 adding 'rna_tools/data/PO3_inner.pdb' 2026-02-14T09:51:48,776 adding 'rna_tools/data/U.pdb' 2026-02-14T09:51:48,777 adding 'rna_tools/data/o2prim.pdb' 2026-02-14T09:51:48,779 adding 'rna_tools/data/op4.pdb' 2026-02-14T09:51:48,780 adding 'rna_tools/data/pdb_ids.txt' 2026-02-14T09:51:48,781 adding 'rna_tools/data/rna_pdb_errors.csv' 2026-02-14T09:51:48,782 adding 'rna_tools/data/shape.txt' 2026-02-14T09:51:48,784 adding 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'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSa_UG.pdb' 2026-02-14T09:51:53,218 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSb_UG.pdb' 2026-02-14T09:51:53,219 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_AA.pdb' 2026-02-14T09:51:53,221 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_AC.pdb' 2026-02-14T09:51:53,222 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_AG.pdb' 2026-02-14T09:51:53,224 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_AU.pdb' 2026-02-14T09:51:53,225 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_CA.pdb' 2026-02-14T09:51:53,227 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_CC.pdb' 2026-02-14T09:51:53,228 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_CG.pdb' 2026-02-14T09:51:53,230 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_CU.pdb' 2026-02-14T09:51:53,232 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_GA.pdb' 2026-02-14T09:51:53,233 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_GC.pdb' 2026-02-14T09:51:53,235 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_GG.pdb' 2026-02-14T09:51:53,237 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_GU.pdb' 2026-02-14T09:51:53,238 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UA.pdb' 2026-02-14T09:51:53,240 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UC.pdb' 2026-02-14T09:51:53,242 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UG.pdb' 2026-02-14T09:51:53,243 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UU.pdb' 2026-02-14T09:51:53,244 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_AC.pdb' 2026-02-14T09:51:53,246 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_CA.pdb' 2026-02-14T09:51:53,247 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_CG.pdb' 2026-02-14T09:51:53,249 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_UG.pdb' 2026-02-14T09:51:53,250 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSb_CA.pdb' 2026-02-14T09:51:53,251 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_AG.pdb' 2026-02-14T09:51:53,253 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_AU.pdb' 2026-02-14T09:51:53,254 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_CC.pdb' 2026-02-14T09:51:53,256 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_CG.pdb' 2026-02-14T09:51:53,257 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_CU.pdb' 2026-02-14T09:51:53,259 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_GA.pdb' 2026-02-14T09:51:53,260 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_GG.pdb' 2026-02-14T09:51:53,261 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_UA.pdb' 2026-02-14T09:51:53,263 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_UG.pdb' 2026-02-14T09:51:53,264 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_UU.pdb' 2026-02-14T09:51:53,266 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWHa_AG.pdb' 2026-02-14T09:51:53,267 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWHa_AU.pdb' 2026-02-14T09:51:53,268 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWHa_UA.pdb' 2026-02-14T09:51:53,270 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AA.pdb' 2026-02-14T09:51:53,271 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AC.pdb' 2026-02-14T09:51:53,273 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AG.pdb' 2026-02-14T09:51:53,274 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AU.pdb' 2026-02-14T09:51:53,275 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CA.pdb' 2026-02-14T09:51:53,277 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CC.pdb' 2026-02-14T09:51:53,278 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CG.pdb' 2026-02-14T09:51:53,280 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CU.pdb' 2026-02-14T09:51:53,281 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GA.pdb' 2026-02-14T09:51:53,282 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GC.pdb' 2026-02-14T09:51:53,284 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GG.pdb' 2026-02-14T09:51:53,285 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GU.pdb' 2026-02-14T09:51:53,287 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UA.pdb' 2026-02-14T09:51:53,288 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UC.pdb' 2026-02-14T09:51:53,290 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UG.pdb' 2026-02-14T09:51:53,292 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UU.pdb' 2026-02-14T09:51:53,293 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSa_AC.pdb' 2026-02-14T09:51:53,295 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSa_CC.pdb' 2026-02-14T09:51:53,296 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSa_GU.pdb' 2026-02-14T09:51:53,298 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSb_GU.pdb' 2026-02-14T09:51:53,300 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AA.pdb' 2026-02-14T09:51:53,301 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AC.pdb' 2026-02-14T09:51:53,303 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AG.pdb' 2026-02-14T09:51:53,304 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AU.pdb' 2026-02-14T09:51:53,305 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CA.pdb' 2026-02-14T09:51:53,307 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CC.pdb' 2026-02-14T09:51:53,308 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CG.pdb' 2026-02-14T09:51:53,310 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CU.pdb' 2026-02-14T09:51:53,311 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_GA.pdb' 2026-02-14T09:51:53,312 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_GC.pdb' 2026-02-14T09:51:53,314 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_GU.pdb' 2026-02-14T09:51:53,315 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UA.pdb' 2026-02-14T09:51:53,317 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UC.pdb' 2026-02-14T09:51:53,318 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UG.pdb' 2026-02-14T09:51:53,320 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UU.pdb' 2026-02-14T09:51:53,321 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_AC.pdb' 2026-02-14T09:51:53,322 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_AG.pdb' 2026-02-14T09:51:53,324 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_CA.pdb' 2026-02-14T09:51:53,325 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_CG.pdb' 2026-02-14T09:51:53,327 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_CU.pdb' 2026-02-14T09:51:53,328 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_GA.pdb' 2026-02-14T09:51:53,330 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_GC.pdb' 2026-02-14T09:51:53,331 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_GU.pdb' 2026-02-14T09:51:53,332 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_UC.pdb' 2026-02-14T09:51:53,334 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_UG.pdb' 2026-02-14T09:51:53,335 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_AC.pdb' 2026-02-14T09:51:53,337 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_AG.pdb' 2026-02-14T09:51:53,338 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_CA.pdb' 2026-02-14T09:51:53,339 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_CU.pdb' 2026-02-14T09:51:53,341 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_GA.pdb' 2026-02-14T09:51:53,343 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_GU.pdb' 2026-02-14T09:51:53,344 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_UC.pdb' 2026-02-14T09:51:53,346 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_UG.pdb' 2026-02-14T09:51:53,347 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AA.pdb' 2026-02-14T09:51:53,349 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AC.pdb' 2026-02-14T09:51:53,351 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AG.pdb' 2026-02-14T09:51:53,352 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AU.pdb' 2026-02-14T09:51:53,354 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_CA.pdb' 2026-02-14T09:51:53,355 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_CG.pdb' 2026-02-14T09:51:53,357 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_CU.pdb' 2026-02-14T09:51:53,359 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_GA.pdb' 2026-02-14T09:51:53,360 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_GC.pdb' 2026-02-14T09:51:53,362 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_GG.pdb' 2026-02-14T09:51:53,363 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_UA.pdb' 2026-02-14T09:51:53,364 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_UC.pdb' 2026-02-14T09:51:53,366 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_AU.pdb' 2026-02-14T09:51:53,367 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_CG.pdb' 2026-02-14T09:51:53,368 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_GC.pdb' 2026-02-14T09:51:53,370 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_UA.pdb' 2026-02-14T09:51:53,371 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHb_AU.pdb' 2026-02-14T09:51:53,372 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHb_UA.pdb' 2026-02-14T09:51:53,374 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AA.pdb' 2026-02-14T09:51:53,375 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AC.pdb' 2026-02-14T09:51:53,377 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AG.pdb' 2026-02-14T09:51:53,378 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AU.pdb' 2026-02-14T09:51:53,379 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_CA.pdb' 2026-02-14T09:51:53,381 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_CC.pdb' 2026-02-14T09:51:53,382 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_CU.pdb' 2026-02-14T09:51:53,384 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_GG.pdb' 2026-02-14T09:51:53,385 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_UA.pdb' 2026-02-14T09:51:53,387 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_UG.pdb' 2026-02-14T09:51:53,388 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSa_AG.pdb' 2026-02-14T09:51:53,390 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSa_AU.pdb' 2026-02-14T09:51:53,391 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSa_GG.pdb' 2026-02-14T09:51:53,392 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSb_AG.pdb' 2026-02-14T09:51:53,394 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AA.pdb' 2026-02-14T09:51:53,395 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AC.pdb' 2026-02-14T09:51:53,397 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AG.pdb' 2026-02-14T09:51:53,398 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AU.pdb' 2026-02-14T09:51:53,399 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GA.pdb' 2026-02-14T09:51:53,401 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GC.pdb' 2026-02-14T09:51:53,402 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GG.pdb' 2026-02-14T09:51:53,404 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GU.pdb' 2026-02-14T09:51:53,405 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_AA.pdb' 2026-02-14T09:51:53,407 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_AG.pdb' 2026-02-14T09:51:53,408 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_CA.pdb' 2026-02-14T09:51:53,409 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_CC.pdb' 2026-02-14T09:51:53,411 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_CG.pdb' 2026-02-14T09:51:53,412 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_GG.pdb' 2026-02-14T09:51:53,414 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_GU.pdb' 2026-02-14T09:51:53,415 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_UA.pdb' 2026-02-14T09:51:53,417 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_UG.pdb' 2026-02-14T09:51:53,418 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_UU.pdb' 2026-02-14T09:51:53,419 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWHa_CA.pdb' 2026-02-14T09:51:53,421 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWHa_CG.pdb' 2026-02-14T09:51:53,422 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWHa_UA.pdb' 2026-02-14T09:51:53,424 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AA.pdb' 2026-02-14T09:51:53,425 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AC.pdb' 2026-02-14T09:51:53,427 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AG.pdb' 2026-02-14T09:51:53,428 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AU.pdb' 2026-02-14T09:51:53,429 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CA.pdb' 2026-02-14T09:51:53,431 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CC.pdb' 2026-02-14T09:51:53,432 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CG.pdb' 2026-02-14T09:51:53,434 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CU.pdb' 2026-02-14T09:51:53,435 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_GC.pdb' 2026-02-14T09:51:53,437 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_GU.pdb' 2026-02-14T09:51:53,438 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UA.pdb' 2026-02-14T09:51:53,439 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UC.pdb' 2026-02-14T09:51:53,441 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UG.pdb' 2026-02-14T09:51:53,442 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UU.pdb' 2026-02-14T09:51:53,444 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWSa_AG.pdb' 2026-02-14T09:51:53,445 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_AA.pdb' 2026-02-14T09:51:53,447 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_AC.pdb' 2026-02-14T09:51:53,448 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_AU.pdb' 2026-02-14T09:51:53,450 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CA.pdb' 2026-02-14T09:51:53,452 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CC.pdb' 2026-02-14T09:51:53,453 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CG.pdb' 2026-02-14T09:51:53,455 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CU.pdb' 2026-02-14T09:51:53,456 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_GC.pdb' 2026-02-14T09:51:53,458 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_GG.pdb' 2026-02-14T09:51:53,459 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_GU.pdb' 2026-02-14T09:51:53,461 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UA.pdb' 2026-02-14T09:51:53,463 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UC.pdb' 2026-02-14T09:51:53,464 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UG.pdb' 2026-02-14T09:51:53,466 adding 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'rna_tools/tools/rna_calc_rmsd/lib/rmsd/rmsds.csv' 2026-02-14T09:51:58,559 adding 'rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/1ypa.pdb' 2026-02-14T09:51:58,565 adding 'rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/3ci2.pdb' 2026-02-14T09:51:58,566 adding 'rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/ethane.xyz' 2026-02-14T09:51:58,567 adding 'rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/ethane_bond.xyz' 2026-02-14T09:51:58,568 adding 'rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/ethane_mini.xyz' 2026-02-14T09:51:58,569 adding 'rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/ethane_translate.xyz' 2026-02-14T09:51:58,571 adding 'rna_tools/tools/rna_calc_rmsd/test_data/21_solution_0_ChainA.csv' 2026-02-14T09:51:58,572 adding 'rna_tools/tools/rna_calc_rmsd/test_data/21_solution_0_ChainB.csv' 2026-02-14T09:51:58,574 adding 'rna_tools/tools/rna_calc_rmsd/test_data/21_solution_1_ChainA.csv' 2026-02-14T09:51:58,575 adding 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'rna_tools/tools/rna_calc_rmsd/test_data/struc3.pdb' 2026-02-14T09:51:58,664 adding 'rna_tools/tools/rna_calc_rmsd/test_data/struc4.pdb' 2026-02-14T09:51:59,156 adding 'rna_tools/tools/rna_calc_rmsd/test_data/crops/3jbv_A.pdb' 2026-02-14T09:51:59,665 adding 'rna_tools/tools/rna_calc_rmsd/test_data/crops/3jbv_A_rpr.pdb' 2026-02-14T09:51:59,751 adding 'rna_tools/tools/rna_calc_rmsd/test_data/crops/rRNA_3jbv_A_PrepCaching_geo0_dmb20.0_fcd20.0_gpu1_cpu4_eblk24_blk4_bba1_Pem_rosettaViol0_bbbl0_ga1_n100_s49_df3-18b-fasr_one_prep_pred_3jbv_A_250.pdb' 2026-02-14T09:51:59,824 adding 'rna_tools/tools/rna_calc_rmsd/test_data/crops/rRNA_3jbv_A_PrepCaching_geo0_dmb20.0_fcd20.0_gpu1_cpu4_eblk24_blk4_bba1_Pem_rosettaViol0_bbbl0_ga1_n100_s49_df3-18b-fasr_one_prep_pred_3jbv_A_250_3.pdb' 2026-02-14T09:51:59,896 adding 'rna_tools/tools/rna_calc_rmsd/test_data/crops/rRNA_3jbv_A_PrepCaching_geo0_dmb20.0_fcd20.0_gpu1_cpu4_eblk24_blk4_bba1_Pem_rosettaViol0_bbbl0_ga1_n100_s49_df3-18b-fasr_one_prep_pred_3jbv_A_294.pdb' 2026-02-14T09:51:59,900 adding 'rna_tools/tools/rna_calc_rmsd/test_data/crops/seqs.fasta' 2026-02-14T09:51:59,912 adding 'rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/21_3dRNA_1_rpr.pdb' 2026-02-14T09:51:59,924 adding 'rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/21_Adamiak_1_rpr.pdb' 2026-02-14T09:51:59,935 adding 'rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/21_ChenHighLig_1_rpr.pdb' 2026-02-14T09:51:59,947 adding 'rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/21_Das_1_rpr.pdb' 2026-02-14T09:51:59,960 adding 'rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions/21_solution_0_ChainA.pdb' 2026-02-14T09:51:59,974 adding 'rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions/21_solution_0_ChainB.pdb' 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'rna_tools/tools/rna_calc_rmsd/test_data/pistol/5k7c_clean_onechain_renumber_as_puzzle_srr.pdb' 2026-02-14T09:52:00,330 adding 'rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters/5k7c_clean_onechain_renumber_as_puzzle_srr.pdb' 2026-02-14T09:52:00,346 adding 'rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters/pistol_thrs0.50A_clust01-000001_AA.pdb' 2026-02-14T09:52:00,361 adding 'rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters/pistol_thrs0.50A_clust02-000001_AA.pdb' 2026-02-14T09:52:00,376 adding 'rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters/pistol_thrs0.50A_clust03-000001_AA.pdb' 2026-02-14T09:52:00,379 adding 'rna_tools/tools/rna_calc_rmsd/test_data/ways/backbone+sugar.csv' 2026-02-14T09:52:00,380 adding 'rna_tools/tools/rna_calc_rmsd/test_data/ways/rmsd.csv' 2026-02-14T09:52:00,381 adding 'rna_tools/tools/rna_calc_rmsd/test_data/ways/rmsd_all.csv' 2026-02-14T09:52:00,382 adding 'rna_tools/tools/rna_calc_rmsd/test_data/ways/rmsd_bases.csv' 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'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/jquery-ui-1.10.0.custom.min.js' 2026-02-14T09:52:03,857 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/google-code-prettify/prettify.css' 2026-02-14T09:52:03,859 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/google-code-prettify/prettify.js' 2026-02-14T09:52:03,861 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/demo.css' 2026-02-14T09:52:03,867 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/jquery-ui-1.10.0.custom.css' 2026-02-14T09:52:03,872 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/jquery-ui-1.9.2.custom.css' 2026-02-14T09:52:03,873 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/jquery.ui.1.10.0.ie.css' 2026-02-14T09:52:03,874 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/jquery.ui.1.9.2.ie.css' 2026-02-14T09:52:03,876 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_flat_0_aaaaaa_40x100.png' 2026-02-14T09:52:03,877 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_55_fbf9ee_1x400.png' 2026-02-14T09:52:03,878 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_65_ffffff_1x400.png' 2026-02-14T09:52:03,880 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_75_dadada_1x400.png' 2026-02-14T09:52:03,881 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_75_e6e6e6_1x400.png' 2026-02-14T09:52:03,882 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_75_ffffff_1x400.png' 2026-02-14T09:52:03,883 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_highlight-soft_75_cccccc_1x100.png' 2026-02-14T09:52:03,884 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_inset-soft_95_fef1ec_1x100.png' 2026-02-14T09:52:03,886 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_222222_256x240.png' 2026-02-14T09:52:03,888 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_2e83ff_256x240.png' 2026-02-14T09:52:03,889 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_454545_256x240.png' 2026-02-14T09:52:03,891 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_888888_256x240.png' 2026-02-14T09:52:03,892 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_cd0a0a_256x240.png' 2026-02-14T09:52:03,894 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_f6cf3b_256x240.png' 2026-02-14T09:52:03,896 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js/demo.js' 2026-02-14T09:52:03,909 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js/jquery-1.8.3.min.js' 2026-02-14T09:52:03,937 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js/jquery-ui-1.9.2.custom.min.js' 2026-02-14T09:52:03,941 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/index.html' 2026-02-14T09:52:03,943 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/css/ui.daterangepicker.css' 2026-02-14T09:52:03,947 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js/date.js' 2026-02-14T09:52:03,949 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js/daterangepicker.jQuery.compressed.js' 2026-02-14T09:52:03,952 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js/daterangepicker.jQuery.js' 2026-02-14T09:52:03,954 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/css/enhanced.css' 2026-02-14T09:52:03,956 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-generic.gif' 2026-02-14T09:52:03,957 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-image.gif' 2026-02-14T09:52:03,958 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-media.gif' 2026-02-14T09:52:03,959 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-zip.gif' 2026-02-14T09:52:03,961 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js/enhance.min.js' 2026-02-14T09:52:03,963 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js/fileinput.jquery.js' 2026-02-14T09:52:03,965 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo/jquery.bgiframe-2.1.3-pre.js' 2026-02-14T09:52:03,966 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo/jquery.mousewheel.min.js' 2026-02-14T09:52:03,970 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo/jquery.wijmo-open.1.5.0.css' 2026-02-14T09:52:03,996 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo/jquery.wijmo-open.1.5.0.min.js' 2026-02-14T09:52:04,001 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap-responsive.css' 2026-02-14T09:52:04,003 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap-responsive.min.css' 2026-02-14T09:52:04,013 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap.css' 2026-02-14T09:52:04,023 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap.min.css' 2026-02-14T09:52:04,026 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap/img/glyphicons-halflings-white.png' 2026-02-14T09:52:04,028 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap/img/glyphicons-halflings.png' 2026-02-14T09:52:04,035 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap/js/bootstrap.js' 2026-02-14T09:52:04,039 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap/js/bootstrap.min.js' 2026-02-14T09:52:04,052 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap/js/jquery.js' 2026-02-14T09:52:04,054 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/LICENSE-MIT' 2026-02-14T09:52:04,055 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/README.md' 2026-02-14T09:52:04,057 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src/bootstrap-filestyle.js' 2026-02-14T09:52:04,059 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src/bootstrap-filestyle.min.js' 2026-02-14T09:52:04,061 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/index.html' 2026-02-14T09:52:04,062 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/upload.php' 2026-02-14T09:52:04,071 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/css/bootstrap.min.css' 2026-02-14T09:52:04,074 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img/glyphicons-halflings-white.png' 2026-02-14T09:52:04,076 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img/glyphicons-halflings.png' 2026-02-14T09:52:04,078 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js/aplication.js' 2026-02-14T09:52:04,081 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js/bootstrap.min.js' 2026-02-14T09:52:04,083 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/upload/.folder' 2026-02-14T09:52:04,085 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload/bootstrap-fileupload.css' 2026-02-14T09:52:04,086 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload/bootstrap-fileupload.js' 2026-02-14T09:52:04,088 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload/bootstrap-fileupload.min.css' 2026-02-14T09:52:04,089 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload/bootstrap-fileupload.min.js' 2026-02-14T09:52:04,123 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/1EHZ.cif' 2026-02-14T09:52:04,159 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/1EHZ.pdb' 2026-02-14T09:52:04,162 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/1l2x_restraints.txt' 2026-02-14T09:52:04,164 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/1l2x_rna_clust0.pdb' 2026-02-14T09:52:04,186 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/1xjr.cif' 2026-02-14T09:52:04,201 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/1xjr.pdb' 2026-02-14T09:52:04,213 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/21_3dRNA_1_rpr.pdb' 2026-02-14T09:52:04,225 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/21_Adamiak_1_rpr.pdb' 2026-02-14T09:52:04,236 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/21_ChenHighLig_1_rpr.pdb' 2026-02-14T09:52:04,248 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/21_Das_1_rpr.pdb' 2026-02-14T09:52:04,261 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/21_solution_2_rpr.pdb' 2026-02-14T09:52:04,286 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/2gdi.pdb' 2026-02-14T09:52:04,288 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/2gdi.txt' 2026-02-14T09:52:04,289 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/2gdi_pred.txt' 2026-02-14T09:52:04,291 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/2gdi_rnafold.txt' 2026-02-14T09:52:04,292 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/2gdi_s.txt' 2026-02-14T09:52:04,309 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/5k7c_clean_onechain_renumber_as_puzzle_srr.pdb' 2026-02-14T09:52:04,311 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/5k7c_clean_onechain_renumber_as_puzzle_srr_min.pdb' 2026-02-14T09:52:04,313 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/MissingAtomsAdded_rpr.pdb' 2026-02-14T09:52:04,314 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/gtp.pdb' 2026-02-14T09:52:04,316 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/missing_op1op2_r43OK.pdb' 2026-02-14T09:52:04,317 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/pistol_thrs0.50A_clust272-000001_AA_min.pdb' 2026-02-14T09:52:04,324 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/rp21.zip' 2026-02-14T09:52:04,325 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/tRNA.txt' 2026-02-14T09:52:04,327 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/tRNA_saxs.dat' 2026-02-14T09:52:04,328 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/tetraloop.pdb' 2026-02-14T09:52:04,331 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/tetraloop_helix.pdb' 2026-02-14T09:52:04,333 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/tetraloop_mdr.pdb' 2026-02-14T09:52:04,334 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/to-replace.pdb' 2026-02-14T09:52:04,336 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/triple-ACA.pdb' 2026-02-14T09:52:04,337 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/unmodified_tRNAPhe_restraints.txt' 2026-02-14T09:52:04,366 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_CWC2_C.pdb' 2026-02-14T09:52:04,412 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Cwc2_Exon_Intron.pdb' 2026-02-14T09:52:04,418 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Exon_C.pdb' 2026-02-14T09:52:04,433 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Exon_Intron.pdb' 2026-02-14T09:52:04,448 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Exon_Intron_rpr.pdb' 2026-02-14T09:52:04,468 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Intron_C.pdb' 2026-02-14T09:52:04,517 adding 'rna_tools/tools/webserver-engine/app/static/app/dropzone/dropzone.min.css' 2026-02-14T09:52:04,540 adding 'rna_tools/tools/webserver-engine/app/static/app/dropzone/dropzone.min.js' 2026-02-14T09:52:04,544 adding 'rna_tools/tools/webserver-engine/app/static/app/help/1evv-ss-w11rst2_A.rest' 2026-02-14T09:52:04,553 adding 'rna_tools/tools/webserver-engine/app/static/app/help/submit_seq_w_ss_restraints.png' 2026-02-14T09:52:04,557 adding 'rna_tools/tools/webserver-engine/app/static/app/img/01.jpg' 2026-02-14T09:52:04,577 adding 'rna_tools/tools/webserver-engine/app/static/app/img/01.png' 2026-02-14T09:52:04,589 adding 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2026-02-14T09:52:05,304 adding 'rna_tools-3.27.1.data/scripts/rna_plot_heatmap.py' 2026-02-14T09:52:05,306 adding 'rna_tools-3.27.1.data/scripts/rna_plot_hist.py' 2026-02-14T09:52:05,307 adding 'rna_tools-3.27.1.data/scripts/rna_prediction_significance.py' 2026-02-14T09:52:05,308 adding 'rna_tools-3.27.1.data/scripts/rna_refinement.py' 2026-02-14T09:52:05,310 adding 'rna_tools-3.27.1.data/scripts/rna_rosetta_check_progress.py' 2026-02-14T09:52:05,312 adding 'rna_tools-3.27.1.data/scripts/rna_rosetta_cluster.py' 2026-02-14T09:52:05,313 adding 'rna_tools-3.27.1.data/scripts/rna_rosetta_extract.py' 2026-02-14T09:52:05,315 adding 'rna_tools-3.27.1.data/scripts/rna_rosetta_extract_lowscore_decoys.py' 2026-02-14T09:52:05,316 adding 'rna_tools-3.27.1.data/scripts/rna_rosetta_get_score.py' 2026-02-14T09:52:05,317 adding 'rna_tools-3.27.1.data/scripts/rna_rosetta_head.py' 2026-02-14T09:52:05,319 adding 'rna_tools-3.27.1.data/scripts/rna_rosetta_min.py' 2026-02-14T09:52:05,320 adding 'rna_tools-3.27.1.data/scripts/rna_rosetta_n.py' 2026-02-14T09:52:05,322 adding 'rna_tools-3.27.1.data/scripts/rna_rosetta_run.py' 2026-02-14T09:52:05,324 adding 'rna_tools-3.27.1.data/scripts/rna_rosetta_silent_file_sort_and_select.py' 2026-02-14T09:52:05,325 adding 'rna_tools-3.27.1.data/scripts/rna_rosetta_silent_random.py' 2026-02-14T09:52:05,327 adding 'rna_tools-3.27.1.data/scripts/rna_rosetta_silent_split.py' 2026-02-14T09:52:05,328 adding 'rna_tools-3.27.1.data/scripts/rna_sali2dotbracket.py' 2026-02-14T09:52:05,330 adding 'rna_tools-3.27.1.data/scripts/rna_secondary_structure_prediction.py' 2026-02-14T09:52:05,332 adding 'rna_tools-3.27.1.data/scripts/rna_simrna_cluster.py' 2026-02-14T09:52:05,333 adding 'rna_tools-3.27.1.data/scripts/rna_simrna_extract.py' 2026-02-14T09:52:05,335 adding 'rna_tools-3.27.1.data/scripts/rna_simrna_lowest.py' 2026-02-14T09:52:05,337 adding 'rna_tools-3.27.1.data/scripts/rna_simrnaweb_download_job.py' 2026-02-14T09:52:05,339 adding 'rna_tools-3.27.1.data/scripts/rna_ss_get_bps.py' 2026-02-14T09:52:05,342 adding 'rna_tools-3.27.1.data/scripts/rna_standardize.py' 2026-02-14T09:52:05,343 adding 'rna_tools-3.27.1.data/scripts/rna_test_cuda.py' 2026-02-14T09:52:05,345 adding 'rna_tools-3.27.1.data/scripts/rna_tools_demo.py' 2026-02-14T09:52:05,347 adding 'rna_tools-3.27.1.data/scripts/rna_tools_which.py' 2026-02-14T09:52:05,349 adding 'rna_tools-3.27.1.data/scripts/rna_torsions.py' 2026-02-14T09:52:05,350 adding 'rna_tools-3.27.1.data/scripts/rna_traj_n.py' 2026-02-14T09:52:05,351 adding 'rna_tools-3.27.1.data/scripts/rna_traj_nohetm.py' 2026-02-14T09:52:05,352 adding 'rna_tools-3.27.1.data/scripts/rna_traj_range.py' 2026-02-14T09:52:05,354 adding 'rna_tools-3.27.1.data/scripts/rna_workflow.py' 2026-02-14T09:52:05,356 adding 'rna_tools-3.27.1.data/scripts/rna_x3dna.py' 2026-02-14T09:52:05,357 adding 'rna_tools-3.27.1.data/scripts/select_seq_fromBLAStn_6outfm.py' 2026-02-14T09:52:05,358 adding 'rna_tools-3.27.1.data/scripts/translate.py' 2026-02-14T09:52:05,361 adding 'rna_tools-3.27.1.data/scripts/triplexibility.py' 2026-02-14T09:52:05,363 adding 'rna_tools-3.27.1.data/scripts/triplexibility2.py' 2026-02-14T09:52:05,364 adding 'rna_tools-3.27.1.data/scripts/trx_mutagen.py' 2026-02-14T09:52:05,366 adding 'rna_tools-3.27.1.data/scripts/trx_mutagen_allvsall.py' 2026-02-14T09:52:05,367 adding 'rna_tools-3.27.1.data/scripts/trx_score.py' 2026-02-14T09:52:05,368 adding 'rna_tools-3.27.1.data/scripts/trx_score_allvsall.py' 2026-02-14T09:52:05,370 adding 'rna_tools-3.27.1.data/scripts/trx_score_onCol.py' 2026-02-14T09:52:05,372 adding 'tests/__init__.py' 2026-02-14T09:52:05,373 adding 'tests/test_module.py' 2026-02-14T09:52:05,379 adding 'rna_tools-3.27.1.dist-info/LICENSE' 2026-02-14T09:52:05,383 adding 'rna_tools-3.27.1.dist-info/METADATA' 2026-02-14T09:52:05,384 adding 'rna_tools-3.27.1.dist-info/WHEEL' 2026-02-14T09:52:05,385 adding 'rna_tools-3.27.1.dist-info/top_level.txt' 2026-02-14T09:52:05,418 adding 'rna_tools-3.27.1.dist-info/RECORD' 2026-02-14T09:52:06,191 removing build/bdist.linux-armv7l/wheel 2026-02-14T09:52:06,850 Building wheel for rna-tools (pyproject.toml): finished with status 'done' 2026-02-14T09:52:09,533 Created wheel for rna-tools: filename=rna_tools-3.27.1-py3-none-any.whl size=58395727 sha256=b5a4e359452a1ee4f7bfbac7f389179ff0af44d1c89a2305c95c4fef9d431cde 2026-02-14T09:52:09,535 Stored in directory: /tmp/pip-ephem-wheel-cache-co2dva_8/wheels/94/b8/df/f360063fa053842b6317f2c84fc8702107323cbfdd083b25b8 2026-02-14T09:52:09,624 Successfully built rna-tools 2026-02-14T09:52:11,180 Removed build tracker: '/tmp/pip-build-tracker-qir4119n'