2026-02-28T20:05:05,715 Created temporary directory: /tmp/pip-ephem-wheel-cache-s_3chn1m
2026-02-28T20:05:05,717 Created temporary directory: /tmp/pip-build-tracker-jj1g9r7p
2026-02-28T20:05:05,718 Initialized build tracking at /tmp/pip-build-tracker-jj1g9r7p
2026-02-28T20:05:05,718 Created build tracker: /tmp/pip-build-tracker-jj1g9r7p
2026-02-28T20:05:05,719 Entered build tracker: /tmp/pip-build-tracker-jj1g9r7p
2026-02-28T20:05:05,719 Created temporary directory: /tmp/pip-wheel-x9dg73lx
2026-02-28T20:05:05,723 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-02-28T20:05:05,725 Created temporary directory: /tmp/pip-ephem-wheel-cache-251w0vfb
2026-02-28T20:05:05,747 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-02-28T20:05:05,750 2 location(s) to search for versions of phylotracer:
2026-02-28T20:05:05,750 * https://pypi.org/simple/phylotracer/
2026-02-28T20:05:05,750 * https://www.piwheels.org/simple/phylotracer/
2026-02-28T20:05:05,751 Fetching project page and analyzing links: https://pypi.org/simple/phylotracer/
2026-02-28T20:05:05,752 Getting page https://pypi.org/simple/phylotracer/
2026-02-28T20:05:05,753 Found index url https://pypi.org/simple
2026-02-28T20:05:05,983 Fetched page https://pypi.org/simple/phylotracer/ as application/vnd.pypi.simple.v1+json
2026-02-28T20:05:05,984   Skipping link: No binaries permitted for phylotracer: https://files.pythonhosted.org/packages/81/9e/3481787312a9a3d3af47572361f94693dfada84a9d91f8e6c4a7f5493387/phylotracer-1.0.2-py3-none-any.whl (from https://pypi.org/simple/phylotracer/) (requires-python:<3.13,>=3.8)
2026-02-28T20:05:05,985   Found link https://files.pythonhosted.org/packages/ee/97/02ec79b85b517c6fcbfdfad4fcf3308e3294de76fce33dc3eca9342fc44c/phylotracer-1.0.2.tar.gz (from https://pypi.org/simple/phylotracer/) (requires-python:<3.13,>=3.8), version: 1.0.2
2026-02-28T20:05:05,986 Fetching project page and analyzing links: https://www.piwheels.org/simple/phylotracer/
2026-02-28T20:05:05,987 Getting page https://www.piwheels.org/simple/phylotracer/
2026-02-28T20:05:05,988 Found index url https://www.piwheels.org/simple
2026-02-28T20:05:06,165 Fetched page https://www.piwheels.org/simple/phylotracer/ as text/html
2026-02-28T20:05:06,166 Skipping link: not a file: https://www.piwheels.org/simple/phylotracer/
2026-02-28T20:05:06,166 Skipping link: not a file: https://pypi.org/simple/phylotracer/
2026-02-28T20:05:06,187 Given no hashes to check 1 links for project 'phylotracer': discarding no candidates
2026-02-28T20:05:06,206 Collecting phylotracer==1.0.2
2026-02-28T20:05:06,208   Created temporary directory: /tmp/pip-unpack-smtv8nwy
2026-02-28T20:05:06,355   Downloading phylotracer-1.0.2.tar.gz (127 kB)
2026-02-28T20:05:06,531   Added phylotracer==1.0.2 from https://files.pythonhosted.org/packages/ee/97/02ec79b85b517c6fcbfdfad4fcf3308e3294de76fce33dc3eca9342fc44c/phylotracer-1.0.2.tar.gz to build tracker '/tmp/pip-build-tracker-jj1g9r7p'
2026-02-28T20:05:06,538   Created temporary directory: /tmp/pip-build-env-6vim_wt5
2026-02-28T20:05:06,542   Installing build dependencies: started
2026-02-28T20:05:06,544   Running command pip subprocess to install build dependencies
2026-02-28T20:05:06,574   Error processing line 1 of /home/piwheels/.local/lib/python3.11/site-packages/cntimer.pth:

2026-02-28T20:05:06,613     Traceback (most recent call last):
2026-02-28T20:05:06,614       File "<frozen site>", line 192, in addpackage
2026-02-28T20:05:06,614       File "<string>", line 1, in <module>
2026-02-28T20:05:06,615     ModuleNotFoundError: No module named 'cntimer'

2026-02-28T20:05:06,616   Remainder of file ignored
2026-02-28T20:05:07,714   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-02-28T20:05:08,346   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-02-28T20:05:08,371   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-02-28T20:05:10,139   Collecting setuptools<76,>=64
2026-02-28T20:05:10,236     Using cached https://www.piwheels.org/simple/setuptools/setuptools-75.9.1-py3-none-any.whl (1.2 MB)
2026-02-28T20:05:10,511   Collecting wheel
2026-02-28T20:05:10,528     Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB)
2026-02-28T20:05:10,712   Collecting packaging>=24.0
2026-02-28T20:05:10,728     Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB)
2026-02-28T20:05:13,768   Installing collected packages: setuptools, packaging, wheel
2026-02-28T20:05:17,879     Creating /tmp/pip-build-env-6vim_wt5/overlay/local/bin
2026-02-28T20:05:17,881     changing mode of /tmp/pip-build-env-6vim_wt5/overlay/local/bin/wheel to 755
2026-02-28T20:05:17,903   Successfully installed packaging-26.0 setuptools-75.9.1 wheel-0.46.3
2026-02-28T20:05:18,183   Installing build dependencies: finished with status 'done'
2026-02-28T20:05:18,190   Getting requirements to build wheel: started
2026-02-28T20:05:18,191   Running command Getting requirements to build wheel
2026-02-28T20:05:18,994   running egg_info
2026-02-28T20:05:19,002   writing PhyloTracer.egg-info/PKG-INFO
2026-02-28T20:05:19,008   writing dependency_links to PhyloTracer.egg-info/dependency_links.txt
2026-02-28T20:05:19,010   writing entry points to PhyloTracer.egg-info/entry_points.txt
2026-02-28T20:05:19,012   writing requirements to PhyloTracer.egg-info/requires.txt
2026-02-28T20:05:19,014   writing top-level names to PhyloTracer.egg-info/top_level.txt
2026-02-28T20:05:19,036   reading manifest file 'PhyloTracer.egg-info/SOURCES.txt'
2026-02-28T20:05:19,040   adding license file 'LICENSE'
2026-02-28T20:05:19,044   writing manifest file 'PhyloTracer.egg-info/SOURCES.txt'
2026-02-28T20:05:19,150   Getting requirements to build wheel: finished with status 'done'
2026-02-28T20:05:19,154   Created temporary directory: /tmp/pip-modern-metadata-dh1m7c7d
2026-02-28T20:05:19,156   Preparing metadata (pyproject.toml): started
2026-02-28T20:05:19,157   Running command Preparing metadata (pyproject.toml)
2026-02-28T20:05:19,882   running dist_info
2026-02-28T20:05:19,894   creating /tmp/pip-modern-metadata-dh1m7c7d/PhyloTracer.egg-info
2026-02-28T20:05:19,895   writing /tmp/pip-modern-metadata-dh1m7c7d/PhyloTracer.egg-info/PKG-INFO
2026-02-28T20:05:19,901   writing dependency_links to /tmp/pip-modern-metadata-dh1m7c7d/PhyloTracer.egg-info/dependency_links.txt
2026-02-28T20:05:19,902   writing entry points to /tmp/pip-modern-metadata-dh1m7c7d/PhyloTracer.egg-info/entry_points.txt
2026-02-28T20:05:19,904   writing requirements to /tmp/pip-modern-metadata-dh1m7c7d/PhyloTracer.egg-info/requires.txt
2026-02-28T20:05:19,905   writing top-level names to /tmp/pip-modern-metadata-dh1m7c7d/PhyloTracer.egg-info/top_level.txt
2026-02-28T20:05:19,907   writing manifest file '/tmp/pip-modern-metadata-dh1m7c7d/PhyloTracer.egg-info/SOURCES.txt'
2026-02-28T20:05:19,927   reading manifest file '/tmp/pip-modern-metadata-dh1m7c7d/PhyloTracer.egg-info/SOURCES.txt'
2026-02-28T20:05:19,929   adding license file 'LICENSE'
2026-02-28T20:05:19,932   writing manifest file '/tmp/pip-modern-metadata-dh1m7c7d/PhyloTracer.egg-info/SOURCES.txt'
2026-02-28T20:05:19,933   creating '/tmp/pip-modern-metadata-dh1m7c7d/phylotracer-1.0.2.dist-info'
2026-02-28T20:05:20,070   Preparing metadata (pyproject.toml): finished with status 'done'
2026-02-28T20:05:20,077   Source in /tmp/pip-wheel-x9dg73lx/phylotracer_4cad4558ffd641669edbe2d5ff3c6657 has version 1.0.2, which satisfies requirement phylotracer==1.0.2 from https://files.pythonhosted.org/packages/ee/97/02ec79b85b517c6fcbfdfad4fcf3308e3294de76fce33dc3eca9342fc44c/phylotracer-1.0.2.tar.gz
2026-02-28T20:05:20,078   Removed phylotracer==1.0.2 from https://files.pythonhosted.org/packages/ee/97/02ec79b85b517c6fcbfdfad4fcf3308e3294de76fce33dc3eca9342fc44c/phylotracer-1.0.2.tar.gz from build tracker '/tmp/pip-build-tracker-jj1g9r7p'
2026-02-28T20:05:20,088 Created temporary directory: /tmp/pip-unpack-bofg8piw
2026-02-28T20:05:20,088 Building wheels for collected packages: phylotracer
2026-02-28T20:05:20,093   Created temporary directory: /tmp/pip-wheel-_dwuegfo
2026-02-28T20:05:20,093   Destination directory: /tmp/pip-wheel-_dwuegfo
2026-02-28T20:05:20,095   Building wheel for phylotracer (pyproject.toml): started
2026-02-28T20:05:20,097   Running command Building wheel for phylotracer (pyproject.toml)
2026-02-28T20:05:20,791   running bdist_wheel
2026-02-28T20:05:20,812   running build
2026-02-28T20:05:20,813   running build_py
2026-02-28T20:05:20,820   creating build/lib/phylotracer
2026-02-28T20:05:20,822   copying phylotracer/GD_Loss_Tracker.py -> build/lib/phylotracer
2026-02-28T20:05:20,825   copying phylotracer/GD_Visualizer.py -> build/lib/phylotracer
2026-02-28T20:05:20,828   copying phylotracer/GD_Loss_Visualizer.py -> build/lib/phylotracer
2026-02-28T20:05:20,830   copying phylotracer/OrthoFilter_LB.py -> build/lib/phylotracer
2026-02-28T20:05:20,832   copying phylotracer/PhyloTree_CollapseExpand.py -> build/lib/phylotracer
2026-02-28T20:05:20,835   copying phylotracer/OrthoFilter_Mono.py -> build/lib/phylotracer
2026-02-28T20:05:20,838   copying phylotracer/HaploFinder.py -> build/lib/phylotracer
2026-02-28T20:05:20,841   copying phylotracer/GD_Detector.py -> build/lib/phylotracer
2026-02-28T20:05:20,843   copying phylotracer/TreeTopology_Summarizer.py -> build/lib/phylotracer
2026-02-28T20:05:20,846   copying phylotracer/Phylo_Tracer.py -> build/lib/phylotracer
2026-02-28T20:05:20,849   copying phylotracer/BranchLength_NumericConverter.py -> build/lib/phylotracer
2026-02-28T20:05:20,851   copying phylotracer/Hybrid_Visualizer.py -> build/lib/phylotracer
2026-02-28T20:05:20,854   copying phylotracer/PhyloSupport_Scaler.py -> build/lib/phylotracer
2026-02-28T20:05:20,857   copying phylotracer/Tree_Visualizer.py -> build/lib/phylotracer
2026-02-28T20:05:20,859   copying phylotracer/SyntenyRate.py -> build/lib/phylotracer
2026-02-28T20:05:20,861   copying phylotracer/Hybrid_Tracer.py -> build/lib/phylotracer
2026-02-28T20:05:20,864   copying phylotracer/Ortho_Retriever.py -> build/lib/phylotracer
2026-02-28T20:05:20,867   copying phylotracer/__init__.py -> build/lib/phylotracer
2026-02-28T20:05:20,870   copying phylotracer/Phylo_Rooter.py -> build/lib/phylotracer
2026-02-28T20:05:20,873   running egg_info
2026-02-28T20:05:20,884   writing PhyloTracer.egg-info/PKG-INFO
2026-02-28T20:05:20,889   writing dependency_links to PhyloTracer.egg-info/dependency_links.txt
2026-02-28T20:05:20,891   writing entry points to PhyloTracer.egg-info/entry_points.txt
2026-02-28T20:05:20,892   writing requirements to PhyloTracer.egg-info/requires.txt
2026-02-28T20:05:20,893   writing top-level names to PhyloTracer.egg-info/top_level.txt
2026-02-28T20:05:20,904   reading manifest file 'PhyloTracer.egg-info/SOURCES.txt'
2026-02-28T20:05:20,908   adding license file 'LICENSE'
2026-02-28T20:05:20,912   writing manifest file 'PhyloTracer.egg-info/SOURCES.txt'
2026-02-28T20:05:20,925   installing to build/bdist.linux-armv7l/wheel
2026-02-28T20:05:20,926   running install
2026-02-28T20:05:20,950   running install_lib
2026-02-28T20:05:20,956   creating build/bdist.linux-armv7l/wheel
2026-02-28T20:05:20,959   creating build/bdist.linux-armv7l/wheel/phylotracer
2026-02-28T20:05:20,960   copying build/lib/phylotracer/GD_Loss_Tracker.py -> build/bdist.linux-armv7l/wheel/./phylotracer
2026-02-28T20:05:20,963   copying build/lib/phylotracer/GD_Visualizer.py -> build/bdist.linux-armv7l/wheel/./phylotracer
2026-02-28T20:05:20,965   copying build/lib/phylotracer/GD_Loss_Visualizer.py -> build/bdist.linux-armv7l/wheel/./phylotracer
2026-02-28T20:05:20,967   copying build/lib/phylotracer/OrthoFilter_LB.py -> build/bdist.linux-armv7l/wheel/./phylotracer
2026-02-28T20:05:20,970   copying build/lib/phylotracer/PhyloTree_CollapseExpand.py -> build/bdist.linux-armv7l/wheel/./phylotracer
2026-02-28T20:05:20,972   copying build/lib/phylotracer/OrthoFilter_Mono.py -> build/bdist.linux-armv7l/wheel/./phylotracer
2026-02-28T20:05:20,974   copying build/lib/phylotracer/HaploFinder.py -> build/bdist.linux-armv7l/wheel/./phylotracer
2026-02-28T20:05:20,977   copying build/lib/phylotracer/GD_Detector.py -> build/bdist.linux-armv7l/wheel/./phylotracer
2026-02-28T20:05:20,979   copying build/lib/phylotracer/TreeTopology_Summarizer.py -> build/bdist.linux-armv7l/wheel/./phylotracer
2026-02-28T20:05:20,982   copying build/lib/phylotracer/Phylo_Tracer.py -> build/bdist.linux-armv7l/wheel/./phylotracer
2026-02-28T20:05:20,985   copying build/lib/phylotracer/BranchLength_NumericConverter.py -> build/bdist.linux-armv7l/wheel/./phylotracer
2026-02-28T20:05:20,987   copying build/lib/phylotracer/Hybrid_Visualizer.py -> build/bdist.linux-armv7l/wheel/./phylotracer
2026-02-28T20:05:20,990   copying build/lib/phylotracer/PhyloSupport_Scaler.py -> build/bdist.linux-armv7l/wheel/./phylotracer
2026-02-28T20:05:20,992   copying build/lib/phylotracer/Tree_Visualizer.py -> build/bdist.linux-armv7l/wheel/./phylotracer
2026-02-28T20:05:20,995   copying build/lib/phylotracer/SyntenyRate.py -> build/bdist.linux-armv7l/wheel/./phylotracer
2026-02-28T20:05:20,997   copying build/lib/phylotracer/Hybrid_Tracer.py -> build/bdist.linux-armv7l/wheel/./phylotracer
2026-02-28T20:05:21,000   copying build/lib/phylotracer/Ortho_Retriever.py -> build/bdist.linux-armv7l/wheel/./phylotracer
2026-02-28T20:05:21,002   copying build/lib/phylotracer/__init__.py -> build/bdist.linux-armv7l/wheel/./phylotracer
2026-02-28T20:05:21,005   copying build/lib/phylotracer/Phylo_Rooter.py -> build/bdist.linux-armv7l/wheel/./phylotracer
2026-02-28T20:05:21,007   running install_egg_info
2026-02-28T20:05:21,013   Copying PhyloTracer.egg-info to build/bdist.linux-armv7l/wheel/./PhyloTracer-1.0.2-py3.11.egg-info
2026-02-28T20:05:21,025   running install_scripts
2026-02-28T20:05:21,037   creating build/bdist.linux-armv7l/wheel/phylotracer-1.0.2.dist-info/WHEEL
2026-02-28T20:05:21,039   creating '/tmp/pip-wheel-_dwuegfo/.tmp-xgj6fdv6/phylotracer-1.0.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-02-28T20:05:21,042   adding 'phylotracer/BranchLength_NumericConverter.py'
2026-02-28T20:05:21,044   adding 'phylotracer/GD_Detector.py'
2026-02-28T20:05:21,048   adding 'phylotracer/GD_Loss_Tracker.py'
2026-02-28T20:05:21,050   adding 'phylotracer/GD_Loss_Visualizer.py'
2026-02-28T20:05:21,052   adding 'phylotracer/GD_Visualizer.py'
2026-02-28T20:05:21,056   adding 'phylotracer/HaploFinder.py'
2026-02-28T20:05:21,060   adding 'phylotracer/Hybrid_Tracer.py'
2026-02-28T20:05:21,064   adding 'phylotracer/Hybrid_Visualizer.py'
2026-02-28T20:05:21,066   adding 'phylotracer/OrthoFilter_LB.py'
2026-02-28T20:05:21,070   adding 'phylotracer/OrthoFilter_Mono.py'
2026-02-28T20:05:21,072   adding 'phylotracer/Ortho_Retriever.py'
2026-02-28T20:05:21,074   adding 'phylotracer/PhyloSupport_Scaler.py'
2026-02-28T20:05:21,076   adding 'phylotracer/PhyloTree_CollapseExpand.py'
2026-02-28T20:05:21,080   adding 'phylotracer/Phylo_Rooter.py'
2026-02-28T20:05:21,084   adding 'phylotracer/Phylo_Tracer.py'
2026-02-28T20:05:21,086   adding 'phylotracer/SyntenyRate.py'
2026-02-28T20:05:21,088   adding 'phylotracer/TreeTopology_Summarizer.py'
2026-02-28T20:05:21,092   adding 'phylotracer/Tree_Visualizer.py'
2026-02-28T20:05:21,096   adding 'phylotracer/__init__.py'
2026-02-28T20:05:21,099   adding 'phylotracer-1.0.2.dist-info/LICENSE'
2026-02-28T20:05:21,103   adding 'phylotracer-1.0.2.dist-info/METADATA'
2026-02-28T20:05:21,104   adding 'phylotracer-1.0.2.dist-info/WHEEL'
2026-02-28T20:05:21,105   adding 'phylotracer-1.0.2.dist-info/entry_points.txt'
2026-02-28T20:05:21,106   adding 'phylotracer-1.0.2.dist-info/top_level.txt'
2026-02-28T20:05:21,107   adding 'phylotracer-1.0.2.dist-info/RECORD'
2026-02-28T20:05:21,110   removing build/bdist.linux-armv7l/wheel
2026-02-28T20:05:21,223   Building wheel for phylotracer (pyproject.toml): finished with status 'done'
2026-02-28T20:05:21,229   Created wheel for phylotracer: filename=phylotracer-1.0.2-py3-none-any.whl size=111607 sha256=f571466fb6642838daa134571353e7253734e0800c71f51c59b917b42d6e5796
2026-02-28T20:05:21,230   Stored in directory: /tmp/pip-ephem-wheel-cache-251w0vfb/wheels/dd/d3/31/7ade4eb75f45fc9d17c56d5d9c0c573fe090de98e840383467
2026-02-28T20:05:21,248 Successfully built phylotracer
2026-02-28T20:05:21,255 Removed build tracker: '/tmp/pip-build-tracker-jj1g9r7p'