2026-03-01T17:45:39,175 Created temporary directory: /tmp/pip-ephem-wheel-cache-wuv7ld0u 2026-03-01T17:45:39,177 Created temporary directory: /tmp/pip-build-tracker-33dgi9wd 2026-03-01T17:45:39,177 Initialized build tracking at /tmp/pip-build-tracker-33dgi9wd 2026-03-01T17:45:39,178 Created build tracker: /tmp/pip-build-tracker-33dgi9wd 2026-03-01T17:45:39,178 Entered build tracker: /tmp/pip-build-tracker-33dgi9wd 2026-03-01T17:45:39,179 Created temporary directory: /tmp/pip-wheel-zur5fm87 2026-03-01T17:45:39,182 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-01T17:45:39,185 Created temporary directory: /tmp/pip-ephem-wheel-cache-584ahdhv 2026-03-01T17:45:39,206 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-01T17:45:39,210 2 location(s) to search for versions of scipion-em-xmipp: 2026-03-01T17:45:39,210 * https://pypi.org/simple/scipion-em-xmipp/ 2026-03-01T17:45:39,210 * https://www.piwheels.org/simple/scipion-em-xmipp/ 2026-03-01T17:45:39,211 Fetching project page and analyzing links: https://pypi.org/simple/scipion-em-xmipp/ 2026-03-01T17:45:39,212 Getting page https://pypi.org/simple/scipion-em-xmipp/ 2026-03-01T17:45:39,213 Found index url https://pypi.org/simple 2026-03-01T17:45:39,429 Fetched page https://pypi.org/simple/scipion-em-xmipp/ as application/vnd.pypi.simple.v1+json 2026-03-01T17:45:39,445 Found link 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https://files.pythonhosted.org/packages/7d/5d/c9de1cb42db2cef7b4301f748b1fa3eea7895a0d678af03f4824b15b0e5a/scipion_em_xmipp-26.0.2.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8), version: 26.0.2 2026-03-01T17:45:39,501 Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/a2/3c/37c20eb89b65e3203c1826aef488171041fe90bfccf121bfff036a682fc9/scipion_em_xmipp-26.1.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8) 2026-03-01T17:45:39,502 Found link https://files.pythonhosted.org/packages/1d/c0/922d6d59b584994412f93af6f2ec1fddd92e64735e77f0b73fc93d8d1704/scipion_em_xmipp-26.1.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8), version: 26.1.0 2026-03-01T17:45:39,503 Skipping link: No binaries permitted for scipion-em-xmipp: 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https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b0-py3-none-any.whl#sha256=c74c0e54143586e25d9c1934b2d61f28330897547f50360edf68725306cd0d48 (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-03-01T17:45:39,684 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.2b0-py3-none-any.whl#sha256=a3c81606d051b477612e1eeed371682fdb4d1fa86aa41c28ff73dc8f44003e14 (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-03-01T17:45:39,684 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.1b0-py3-none-any.whl#sha256=5477ba6a7bdacacbd72882e68d7eaceb2a24f32ab32007d2fe70bdab95a2df63 (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-03-01T17:45:39,685 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3b0-py3-none-any.whl#sha256=e484efa82b28bf099ece04ecdc9a642dafd23ffc44ae414d77989f9c576bb96a (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-03-01T17:45:39,686 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-1.0.0b1-py3-none-any.whl#sha256=6d36929f4411ac1ff69548230bf74d77c4cc75e68aead196203186fb26094e49 (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-03-01T17:45:39,686 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-1.0.0a1-py3-none-any.whl#sha256=c088df2fbccef99c06f812beb1584e487375276c582430f35a8a78620ea3a41f (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-03-01T17:45:39,687 Skipping link: not a file: https://www.piwheels.org/simple/scipion-em-xmipp/ 2026-03-01T17:45:39,687 Skipping link: not a file: https://pypi.org/simple/scipion-em-xmipp/ 2026-03-01T17:45:39,714 Given no hashes to check 1 links for project 'scipion-em-xmipp': discarding no candidates 2026-03-01T17:45:39,733 Collecting scipion-em-xmipp==28.0.0 2026-03-01T17:45:39,736 Created temporary directory: /tmp/pip-unpack-3q72txws 2026-03-01T17:45:39,954 Downloading scipion_em_xmipp-28.0.0.tar.gz (1.5 MB) 2026-03-01T17:45:40,970 Added scipion-em-xmipp==28.0.0 from https://files.pythonhosted.org/packages/61/13/4dd9dc4d89e538adcfdec49f0020fa2241b28be66e8a7c6948941aeed8f0/scipion_em_xmipp-28.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-33dgi9wd' 2026-03-01T17:45:40,975 Created temporary directory: /tmp/pip-build-env-ua0arhgi 2026-03-01T17:45:40,980 Installing build dependencies: started 2026-03-01T17:45:40,982 Running command pip subprocess to install build dependencies 2026-03-01T17:45:41,018 Error processing line 1 of /home/piwheels/.local/lib/python3.11/site-packages/cntimer.pth: 2026-03-01T17:45:41,066 Traceback (most recent call last): 2026-03-01T17:45:41,067 File "", line 192, in addpackage 2026-03-01T17:45:41,067 File "", line 1, in 2026-03-01T17:45:41,068 ModuleNotFoundError: No module named 'cntimer' 2026-03-01T17:45:41,069 Remainder of file ignored 2026-03-01T17:45:42,163 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-03-01T17:45:42,746 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-01T17:45:42,769 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-01T17:45:44,529 Collecting setuptools 2026-03-01T17:45:44,607 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.0-py3-none-any.whl (1.0 MB) 2026-03-01T17:45:47,622 Installing collected packages: setuptools 2026-03-01T17:45:50,805 Successfully installed setuptools-82.0.0 2026-03-01T17:45:51,071 Installing build dependencies: finished with status 'done' 2026-03-01T17:45:51,077 Getting requirements to build wheel: started 2026-03-01T17:45:51,079 Running command Getting requirements to build wheel 2026-03-01T17:45:51,689 No `packages` or `py_modules` configuration, performing automatic discovery. 2026-03-01T17:45:51,689 `flat-layout` detected -- analysing . 2026-03-01T17:45:51,714 discovered packages -- ['xmipp3', 'xmipp3.convert', 'xmipp3.protocols', 'xmipp3.legacy', 'xmipp3.viewers', 'xmipp3.tests', 'xmipp3.protocols.protocol_projmatch', 'xmipp3.protocols.protocol_preprocess', 'xmipp3.legacy.protocols', 'xmipp3.legacy.viewers', 'xmipp3.legacy.tests'] 2026-03-01T17:45:51,719 /tmp/pip-build-env-ua0arhgi/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-01T17:45:51,720 !! 2026-03-01T17:45:51,721 ******************************************************************************** 2026-03-01T17:45:51,721 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-01T17:45:51,723 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-01T17:45:51,723 or your builds will no longer be supported. 2026-03-01T17:45:51,725 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-01T17:45:51,725 ******************************************************************************** 2026-03-01T17:45:51,726 !! 2026-03-01T17:45:51,727 corresp(dist, value, root_dir) 2026-03-01T17:45:51,808 running egg_info 2026-03-01T17:45:51,814 writing scipion_em_xmipp.egg-info/PKG-INFO 2026-03-01T17:45:51,817 writing dependency_links to scipion_em_xmipp.egg-info/dependency_links.txt 2026-03-01T17:45:51,819 writing entry points to scipion_em_xmipp.egg-info/entry_points.txt 2026-03-01T17:45:51,821 writing requirements to scipion_em_xmipp.egg-info/requires.txt 2026-03-01T17:45:51,822 writing top-level names to scipion_em_xmipp.egg-info/top_level.txt 2026-03-01T17:45:51,861 reading manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt' 2026-03-01T17:45:51,875 reading manifest template 'MANIFEST.in' 2026-03-01T17:45:51,878 adding license file 'LICENSE' 2026-03-01T17:45:51,891 writing manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt' 2026-03-01T17:45:51,989 Getting requirements to build wheel: finished with status 'done' 2026-03-01T17:45:51,992 Created temporary directory: /tmp/pip-modern-metadata-0np_zmvv 2026-03-01T17:45:51,994 Preparing metadata (pyproject.toml): started 2026-03-01T17:45:51,995 Running command Preparing metadata (pyproject.toml) 2026-03-01T17:45:52,556 No `packages` or `py_modules` configuration, performing automatic discovery. 2026-03-01T17:45:52,556 `flat-layout` detected -- analysing . 2026-03-01T17:45:52,575 discovered packages -- ['xmipp3', 'xmipp3.convert', 'xmipp3.protocols', 'xmipp3.legacy', 'xmipp3.viewers', 'xmipp3.tests', 'xmipp3.protocols.protocol_projmatch', 'xmipp3.protocols.protocol_preprocess', 'xmipp3.legacy.protocols', 'xmipp3.legacy.viewers', 'xmipp3.legacy.tests'] 2026-03-01T17:45:52,579 /tmp/pip-build-env-ua0arhgi/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-01T17:45:52,580 !! 2026-03-01T17:45:52,581 ******************************************************************************** 2026-03-01T17:45:52,582 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-01T17:45:52,583 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-01T17:45:52,584 or your builds will no longer be supported. 2026-03-01T17:45:52,585 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-01T17:45:52,586 ******************************************************************************** 2026-03-01T17:45:52,587 !! 2026-03-01T17:45:52,587 corresp(dist, value, root_dir) 2026-03-01T17:45:52,665 running dist_info 2026-03-01T17:45:52,676 creating /tmp/pip-modern-metadata-0np_zmvv/scipion_em_xmipp.egg-info 2026-03-01T17:45:52,677 writing /tmp/pip-modern-metadata-0np_zmvv/scipion_em_xmipp.egg-info/PKG-INFO 2026-03-01T17:45:52,680 writing dependency_links to /tmp/pip-modern-metadata-0np_zmvv/scipion_em_xmipp.egg-info/dependency_links.txt 2026-03-01T17:45:52,682 writing entry points to /tmp/pip-modern-metadata-0np_zmvv/scipion_em_xmipp.egg-info/entry_points.txt 2026-03-01T17:45:52,684 writing requirements to /tmp/pip-modern-metadata-0np_zmvv/scipion_em_xmipp.egg-info/requires.txt 2026-03-01T17:45:52,685 writing top-level names to /tmp/pip-modern-metadata-0np_zmvv/scipion_em_xmipp.egg-info/top_level.txt 2026-03-01T17:45:52,687 writing manifest file '/tmp/pip-modern-metadata-0np_zmvv/scipion_em_xmipp.egg-info/SOURCES.txt' 2026-03-01T17:45:52,726 reading manifest file '/tmp/pip-modern-metadata-0np_zmvv/scipion_em_xmipp.egg-info/SOURCES.txt' 2026-03-01T17:45:52,729 reading manifest template 'MANIFEST.in' 2026-03-01T17:45:52,732 adding license file 'LICENSE' 2026-03-01T17:45:52,742 writing manifest file '/tmp/pip-modern-metadata-0np_zmvv/scipion_em_xmipp.egg-info/SOURCES.txt' 2026-03-01T17:45:52,744 creating '/tmp/pip-modern-metadata-0np_zmvv/scipion_em_xmipp-28.0.0.dist-info' 2026-03-01T17:45:52,873 Preparing metadata (pyproject.toml): finished with status 'done' 2026-03-01T17:45:52,878 Source in /tmp/pip-wheel-zur5fm87/scipion-em-xmipp_e656a42beb494c24a79fe6428c413e4f has version 28.0.0, which satisfies requirement scipion-em-xmipp==28.0.0 from https://files.pythonhosted.org/packages/61/13/4dd9dc4d89e538adcfdec49f0020fa2241b28be66e8a7c6948941aeed8f0/scipion_em_xmipp-28.0.0.tar.gz 2026-03-01T17:45:52,880 Removed scipion-em-xmipp==28.0.0 from https://files.pythonhosted.org/packages/61/13/4dd9dc4d89e538adcfdec49f0020fa2241b28be66e8a7c6948941aeed8f0/scipion_em_xmipp-28.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-33dgi9wd' 2026-03-01T17:45:52,885 Created temporary directory: /tmp/pip-unpack-75aln4c9 2026-03-01T17:45:52,886 Building wheels for collected packages: scipion-em-xmipp 2026-03-01T17:45:52,890 Created temporary directory: /tmp/pip-wheel-agdpp0_4 2026-03-01T17:45:52,891 Destination directory: /tmp/pip-wheel-agdpp0_4 2026-03-01T17:45:52,892 Building wheel for scipion-em-xmipp (pyproject.toml): started 2026-03-01T17:45:52,894 Running command Building wheel for scipion-em-xmipp (pyproject.toml) 2026-03-01T17:45:53,436 No `packages` or `py_modules` configuration, performing automatic discovery. 2026-03-01T17:45:53,436 `flat-layout` detected -- analysing . 2026-03-01T17:45:53,455 discovered packages -- ['xmipp3', 'xmipp3.convert', 'xmipp3.protocols', 'xmipp3.legacy', 'xmipp3.viewers', 'xmipp3.tests', 'xmipp3.protocols.protocol_projmatch', 'xmipp3.protocols.protocol_preprocess', 'xmipp3.legacy.protocols', 'xmipp3.legacy.viewers', 'xmipp3.legacy.tests'] 2026-03-01T17:45:53,459 /tmp/pip-build-env-ua0arhgi/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-01T17:45:53,460 !! 2026-03-01T17:45:53,461 ******************************************************************************** 2026-03-01T17:45:53,461 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-01T17:45:53,462 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-01T17:45:53,463 or your builds will no longer be supported. 2026-03-01T17:45:53,464 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-01T17:45:53,465 ******************************************************************************** 2026-03-01T17:45:53,466 !! 2026-03-01T17:45:53,466 corresp(dist, value, root_dir) 2026-03-01T17:45:53,533 running bdist_wheel 2026-03-01T17:45:53,551 running build 2026-03-01T17:45:53,551 running build_py 2026-03-01T17:45:53,557 creating build/lib/xmipp3 2026-03-01T17:45:53,560 copying xmipp3/programs.py -> build/lib/xmipp3 2026-03-01T17:45:53,562 copying xmipp3/bibtex.py -> build/lib/xmipp3 2026-03-01T17:45:53,565 copying xmipp3/protocolsCollectInfo.py -> build/lib/xmipp3 2026-03-01T17:45:53,567 copying xmipp3/checkProtocolsConf.py -> build/lib/xmipp3 2026-03-01T17:45:53,569 copying xmipp3/__init__.py -> build/lib/xmipp3 2026-03-01T17:45:53,572 copying xmipp3/constants.py -> build/lib/xmipp3 2026-03-01T17:45:53,574 copying xmipp3/version.py -> build/lib/xmipp3 2026-03-01T17:45:53,575 copying xmipp3/base.py -> build/lib/xmipp3 2026-03-01T17:45:53,578 copying xmipp3/wizards.py -> build/lib/xmipp3 2026-03-01T17:45:53,581 copying xmipp3/logParser.py -> build/lib/xmipp3 2026-03-01T17:45:53,583 copying xmipp3/utils.py -> build/lib/xmipp3 2026-03-01T17:45:53,586 creating build/lib/xmipp3/convert 2026-03-01T17:45:53,587 copying xmipp3/convert/convert.py -> build/lib/xmipp3/convert 2026-03-01T17:45:53,591 copying xmipp3/convert/__init__.py -> build/lib/xmipp3/convert 2026-03-01T17:45:53,592 copying xmipp3/convert/dataimport.py -> build/lib/xmipp3/convert 2026-03-01T17:45:53,595 copying xmipp3/convert/io_coordinates.py -> build/lib/xmipp3/convert 2026-03-01T17:45:53,600 creating build/lib/xmipp3/protocols 2026-03-01T17:45:53,601 copying xmipp3/protocols/protocol_resolution_fso.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,603 copying xmipp3/protocols/protocol_align_volume.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,606 copying xmipp3/protocols/protocol_phantom_create.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,608 copying xmipp3/protocols/protocol_apply_tilt_to_ctf.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,610 copying xmipp3/protocols/protocol_extract_particles_pairs.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,613 copying xmipp3/protocols/protocol_ctf_correct_phase.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,614 copying xmipp3/protocols/protocol_resolution_deepres.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,617 copying xmipp3/protocols/protocol_movie_max_shift.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,620 copying xmipp3/protocols/protocol_compute_likelihood.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,622 copying xmipp3/protocols/protocol_flexalign.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,625 copying xmipp3/protocols/protocol_subtract_projection.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,627 copying xmipp3/protocols/protocol_shift_particles.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,630 copying xmipp3/protocols/protocol_alignPCA_2D.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,632 copying xmipp3/protocols/protocol_align_volume_and_particles.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,635 copying xmipp3/protocols/protocol_reconstruct_significant.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,638 copying xmipp3/protocols/protocol_convert_pdb.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,640 copying xmipp3/protocols/protocol_apply_transformation_matrix.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,643 copying xmipp3/protocols/protocol_resolution_monogenic_signal.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,645 copying xmipp3/protocols/protocol_multiple_fscs.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,648 copying xmipp3/protocols/protocol_movie_gain.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,650 copying xmipp3/protocols/protocol_ml2d.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,653 copying xmipp3/protocols/protocol_ransac.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,656 copying xmipp3/protocols/protocol_particle_pick_pairs.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,658 copying xmipp3/protocols/protocol_reconstruct_swarm.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,661 copying xmipp3/protocols/protocol_generate_reprojections.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,663 copying xmipp3/protocols/protocol_preprocess_micrographs.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,666 copying xmipp3/protocols/protocol_normalize_strain.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,668 copying xmipp3/protocols/protocol_helical_parameters.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,670 copying xmipp3/protocols/protocol_write_testP.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,672 copying xmipp3/protocols/__init__.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,675 copying xmipp3/protocols/protocol_volume_strain.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,677 copying xmipp3/protocols/protocol_volume_deform_zernike3d.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,679 copying xmipp3/protocols/protocol_compare_angles.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,682 copying xmipp3/protocols/protocol_resolution_directional.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,684 copying xmipp3/protocols/protocol_volume_local_adjust.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,687 copying xmipp3/protocols/protocol_core_analysis.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,689 copying xmipp3/protocols/protocol_particle_pick_remove_duplicates.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,692 copying xmipp3/protocols/protocol_movie_alignment_consensus.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,695 copying xmipp3/protocols/protocol_compare_reprojections.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,699 copying xmipp3/protocols/protocol_apply_zernike3d.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,703 copying xmipp3/protocols/protocol_cl2d_align.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,705 copying xmipp3/protocols/protocol_assignment_tilt_pair.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,708 copying xmipp3/protocols/protocol_ctf_micrographs.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,711 copying xmipp3/protocols/protocol_rotate_volume.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,713 copying xmipp3/protocols/protocol_particle_pick_consensus.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,715 copying xmipp3/protocols/protocol_consensus_local_ctf.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,718 copying xmipp3/protocols/protocol_mics_defocus_balancer.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,720 copying xmipp3/protocols/protocol_kerdensom.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,723 copying xmipp3/protocols/protocol_reconstruct_fourier.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,725 copying xmipp3/protocols/protocol_screen_deepConsensus.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,730 copying xmipp3/protocols/protocol_movie_split_frames.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,733 copying xmipp3/protocols/protocol_rotational_symmetry.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,735 copying xmipp3/protocols/protocol_deep_hand.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,738 copying xmipp3/protocols/protocol_analyze_local_ctf.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,740 copying xmipp3/protocols/protocol_volume_adjust_sub.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,743 copying xmipp3/protocols/protocol_resolution3d.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,745 copying xmipp3/protocols/protocol_validate_overfitting.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,748 copying xmipp3/protocols/protocol_particle_pick.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,750 copying xmipp3/protocols/protocol_screen_particles.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,753 copying xmipp3/protocols/protocol_classes_2d_mapping.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,755 copying xmipp3/protocols/protocol_ctf_defocus_group.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,758 copying xmipp3/protocols/protocol_ctf_consensus.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,761 copying xmipp3/protocols/protocol_structure_map_zernike3d.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,764 copying xmipp3/protocols/protocol_write_testC.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,766 copying xmipp3/protocols/protocol_deep_micrograph_screen.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,768 copying xmipp3/protocols/protocol_structure_map.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,771 copying xmipp3/protocols/protocol_validate_nontilt.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,773 copying xmipp3/protocols/protocol_trigger_data.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,776 copying xmipp3/protocols/protocol_ctf_correct_wiener2d.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,779 copying xmipp3/protocols/protocol_denoise_particles.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,781 copying xmipp3/protocols/protocol_cl2d.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,784 copying xmipp3/protocols/protocol_movie_dose_analysis.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,787 copying xmipp3/protocols/protocol_extract_particles.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,790 copying xmipp3/protocols/protocol_consensus_classes.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,794 copying xmipp3/protocols/protocol_eliminate_empty_images.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,797 copying xmipp3/protocols/protocol_shift_volume.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,800 copying xmipp3/protocols/protocol_reconstruct_highres.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,804 copying xmipp3/protocols/protocol_random_conical_tilt.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,807 copying xmipp3/protocols/protocol_cl2d_clustering.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,810 copying xmipp3/protocols/protocol_angular_graph_consistency.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,814 copying xmipp3/protocols/protocol_tilt_analysis.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,816 copying xmipp3/protocols/protocol_pick_noise.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,819 copying xmipp3/protocols/protocol_multireference_alignability.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,821 copying xmipp3/protocols/protocol_create_gallery.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,824 copying xmipp3/protocols/protocol_extract_asymmetric_unit.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,826 copying xmipp3/protocols/protocol_volume_local_sharpening.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,829 copying xmipp3/protocols/protocol_particle_pick_automatic.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,832 copying xmipp3/protocols/protocol_break_symmetry.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,834 copying xmipp3/protocols/protocol_simulate_ctf.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,836 copying xmipp3/protocols/protocol_validate_fscq.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,839 copying xmipp3/protocols/protocol_resolution_bfactor.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,841 copying xmipp3/protocols/protocol_postProcessing_deepPostProcessing.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,844 copying xmipp3/protocols/protocol_local_ctf.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,846 copying xmipp3/protocols/protocol_center_particles.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,848 copying xmipp3/protocols/protocol_apply_alignment.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,850 copying xmipp3/protocols/protocol_volume_consensus.py -> build/lib/xmipp3/protocols 2026-03-01T17:45:53,853 creating build/lib/xmipp3/legacy 2026-03-01T17:45:53,854 copying xmipp3/legacy/__init__.py -> build/lib/xmipp3/legacy 2026-03-01T17:45:53,857 creating build/lib/xmipp3/viewers 2026-03-01T17:45:53,858 copying xmipp3/viewers/viewer_resolution3d.py -> build/lib/xmipp3/viewers 2026-03-01T17:45:53,860 copying xmipp3/viewers/viewer_swarm.py -> build/lib/xmipp3/viewers 2026-03-01T17:45:53,862 copying xmipp3/viewers/plotter.py -> build/lib/xmipp3/viewers 2026-03-01T17:45:53,864 copying xmipp3/viewers/viewer_normalize_strain.py -> build/lib/xmipp3/viewers 2026-03-01T17:45:53,866 copying xmipp3/viewers/viewer_consensus_classes.py -> build/lib/xmipp3/viewers 2026-03-01T17:45:53,868 copying xmipp3/viewers/viewer_resolution_deepres.py -> build/lib/xmipp3/viewers 2026-03-01T17:45:53,870 copying xmipp3/viewers/viewer_validate_overfitting.py -> build/lib/xmipp3/viewers 2026-03-01T17:45:53,873 copying xmipp3/viewers/viewer_analyze_local_ctf.py -> build/lib/xmipp3/viewers 2026-03-01T17:45:53,875 copying xmipp3/viewers/viewer_projmatch.py -> build/lib/xmipp3/viewers 2026-03-01T17:45:53,878 copying xmipp3/viewers/viewer_deep_consensus.py -> build/lib/xmipp3/viewers 2026-03-01T17:45:53,880 copying xmipp3/viewers/viewer_volume_strain.py -> build/lib/xmipp3/viewers 2026-03-01T17:45:53,882 copying xmipp3/viewers/viewer_resolution_bfactor.py -> build/lib/xmipp3/viewers 2026-03-01T17:45:53,884 copying xmipp3/viewers/viewer_deep_micrograph_cleaner.py -> build/lib/xmipp3/viewers 2026-03-01T17:45:53,886 copying xmipp3/viewers/__init__.py -> build/lib/xmipp3/viewers 2026-03-01T17:45:53,888 copying xmipp3/viewers/viewer_subtract_projection.py -> build/lib/xmipp3/viewers 2026-03-01T17:45:53,890 copying xmipp3/viewers/viewer_ctf_consensus.py -> build/lib/xmipp3/viewers 2026-03-01T17:45:53,893 copying xmipp3/viewers/viewer_resolution_fso.py -> build/lib/xmipp3/viewers 2026-03-01T17:45:53,895 copying xmipp3/viewers/viewer_dose_analysis.py -> build/lib/xmipp3/viewers 2026-03-01T17:45:53,898 copying xmipp3/viewers/viewer_reconstruct_highres.py -> build/lib/xmipp3/viewers 2026-03-01T17:45:53,900 copying xmipp3/viewers/viewer_volume_consensus.py -> build/lib/xmipp3/viewers 2026-03-01T17:45:53,902 copying xmipp3/viewers/viewer_cl2d.py -> build/lib/xmipp3/viewers 2026-03-01T17:45:53,904 copying xmipp3/viewers/viewer_LL_matrix.py -> build/lib/xmipp3/viewers 2026-03-01T17:45:53,906 copying xmipp3/viewers/viewer_deepEMHancer.py -> build/lib/xmipp3/viewers 2026-03-01T17:45:53,908 copying xmipp3/viewers/viewer_extract_asymmetric_unit.py -> build/lib/xmipp3/viewers 2026-03-01T17:45:53,911 copying xmipp3/viewers/viewer_structure_map.py -> build/lib/xmipp3/viewers 2026-03-01T17:45:53,913 copying xmipp3/viewers/viewer.py -> build/lib/xmipp3/viewers 2026-03-01T17:45:53,916 copying xmipp3/viewers/viewer_eliminate_empty_images.py -> build/lib/xmipp3/viewers 2026-03-01T17:45:53,918 copying xmipp3/viewers/viewer_volume_deform_zernike3d.py -> build/lib/xmipp3/viewers 2026-03-01T17:45:53,920 copying xmipp3/viewers/viewer_cl2d_clustering.py -> build/lib/xmipp3/viewers 2026-03-01T17:45:53,922 copying xmipp3/viewers/viewer_local_sharpening.py -> build/lib/xmipp3/viewers 2026-03-01T17:45:53,924 copying xmipp3/viewers/viewer_apply_tilt_to_ctf.py -> build/lib/xmipp3/viewers 2026-03-01T17:45:53,926 copying xmipp3/viewers/viewer_pdb_deform_zernike3d.py -> build/lib/xmipp3/viewers 2026-03-01T17:45:53,928 copying xmipp3/viewers/viewer_validate_nontilt.py -> build/lib/xmipp3/viewers 2026-03-01T17:45:53,930 copying xmipp3/viewers/viewer_ml2d.py -> build/lib/xmipp3/viewers 2026-03-01T17:45:53,933 copying xmipp3/viewers/viewer_volume_subtraction.py -> build/lib/xmipp3/viewers 2026-03-01T17:45:53,935 copying xmipp3/viewers/viewer_validate_fscq.py -> build/lib/xmipp3/viewers 2026-03-01T17:45:53,938 copying xmipp3/viewers/viewer_movie_alignment.py -> build/lib/xmipp3/viewers 2026-03-01T17:45:53,940 copying xmipp3/viewers/viewer_resolution_directional.py -> build/lib/xmipp3/viewers 2026-03-01T17:45:53,942 copying xmipp3/viewers/viewer_ransac.py -> build/lib/xmipp3/viewers 2026-03-01T17:45:53,944 copying xmipp3/viewers/viewer_resolution_monogenic_signal.py -> build/lib/xmipp3/viewers 2026-03-01T17:45:53,948 creating build/lib/xmipp3/tests 2026-03-01T17:45:53,949 copying xmipp3/tests/test_protocol_validate_overfitting.py -> build/lib/xmipp3/tests 2026-03-01T17:45:53,951 copying xmipp3/tests/test_protocol_consensus_classes3D.py -> build/lib/xmipp3/tests 2026-03-01T17:45:53,954 copying xmipp3/tests/test_protocol_screen_deepConsensus.py -> build/lib/xmipp3/tests 2026-03-01T17:45:53,956 copying xmipp3/tests/test_protocol_compare_angles.py -> build/lib/xmipp3/tests 2026-03-01T17:45:53,958 copying xmipp3/tests/test_protocols_deepres.py -> build/lib/xmipp3/tests 2026-03-01T17:45:53,960 copying xmipp3/tests/test_protocols_deepVolPostprocessing.py -> build/lib/xmipp3/tests 2026-03-01T17:45:53,962 copying xmipp3/tests/test_protocols_fso.py -> build/lib/xmipp3/tests 2026-03-01T17:45:53,964 copying xmipp3/tests/test_protocol_angular_graph_consistency.py -> build/lib/xmipp3/tests 2026-03-01T17:45:53,967 copying xmipp3/tests/test_protocol_simulate_ctf.py -> build/lib/xmipp3/tests 2026-03-01T17:45:53,969 copying xmipp3/tests/test_protocol_likelihood.py -> build/lib/xmipp3/tests 2026-03-01T17:45:53,971 copying xmipp3/tests/test_protocol_monodir.py -> build/lib/xmipp3/tests 2026-03-01T17:45:53,974 copying xmipp3/tests/test_protocol_reconstruct_fourier.py -> build/lib/xmipp3/tests 2026-03-01T17:45:53,976 copying xmipp3/tests/test_protocols_local_defocus.py -> build/lib/xmipp3/tests 2026-03-01T17:45:53,979 copying xmipp3/tests/test_protocols_xmipp_2d.py -> build/lib/xmipp3/tests 2026-03-01T17:45:53,982 copying xmipp3/tests/test_protocols_xmipp_movies.py -> build/lib/xmipp3/tests 2026-03-01T17:45:53,985 copying xmipp3/tests/test_protocols_monores.py -> build/lib/xmipp3/tests 2026-03-01T17:45:53,988 copying xmipp3/tests/__init__.py -> build/lib/xmipp3/tests 2026-03-01T17:45:53,990 copying xmipp3/tests/test_protocols_xmipp_3d.py -> build/lib/xmipp3/tests 2026-03-01T17:45:53,995 copying xmipp3/tests/test_protocols_localdeblur.py -> build/lib/xmipp3/tests 2026-03-01T17:45:53,997 copying xmipp3/tests/test_convert_xmipp.py -> build/lib/xmipp3/tests 2026-03-01T17:45:54,001 copying xmipp3/tests/test_protocols_highres.py -> build/lib/xmipp3/tests 2026-03-01T17:45:54,004 copying xmipp3/tests/test_protocols_add_noise.py -> build/lib/xmipp3/tests 2026-03-01T17:45:54,006 copying xmipp3/tests/test_protocols_continuousflex.py -> build/lib/xmipp3/tests 2026-03-01T17:45:54,009 copying xmipp3/tests/test_protocols_xmipp_movie_resize.py -> build/lib/xmipp3/tests 2026-03-01T17:45:54,011 copying xmipp3/tests/test_protocol_ctf_consensus.py -> build/lib/xmipp3/tests 2026-03-01T17:45:54,014 copying xmipp3/tests/test_protocol_validate_fscq.py -> build/lib/xmipp3/tests 2026-03-01T17:45:54,016 copying xmipp3/tests/test_protocols_deepcenter_predict.py -> build/lib/xmipp3/tests 2026-03-01T17:45:54,018 copying xmipp3/tests/test_protocol_extract_asymmetric_unit.py -> build/lib/xmipp3/tests 2026-03-01T17:45:54,021 copying xmipp3/tests/test_protocol_split_frames.py -> build/lib/xmipp3/tests 2026-03-01T17:45:54,024 copying xmipp3/tests/test_protocols_zernike3d.py -> build/lib/xmipp3/tests 2026-03-01T17:45:54,028 copying xmipp3/tests/test_protocol_multireference_alignability.py -> build/lib/xmipp3/tests 2026-03-01T17:45:54,030 copying xmipp3/tests/test_protocols_realignment_classes.py -> build/lib/xmipp3/tests 2026-03-01T17:45:54,033 copying xmipp3/tests/test_protocols_xmipp_mics.py -> build/lib/xmipp3/tests 2026-03-01T17:45:54,036 copying xmipp3/tests/test_protocol_multiple_fsc.py -> build/lib/xmipp3/tests 2026-03-01T17:45:54,039 copying xmipp3/tests/test_protocol_apply_transformation_matrix.py -> build/lib/xmipp3/tests 2026-03-01T17:45:54,042 creating build/lib/xmipp3/protocols/protocol_projmatch 2026-03-01T17:45:54,043 copying xmipp3/protocols/protocol_projmatch/projmatch_steps.py -> build/lib/xmipp3/protocols/protocol_projmatch 2026-03-01T17:45:54,047 copying xmipp3/protocols/protocol_projmatch/__init__.py -> build/lib/xmipp3/protocols/protocol_projmatch 2026-03-01T17:45:54,049 copying xmipp3/protocols/protocol_projmatch/projmatch_form.py -> build/lib/xmipp3/protocols/protocol_projmatch 2026-03-01T17:45:54,053 copying xmipp3/protocols/protocol_projmatch/protocol_projmatch.py -> build/lib/xmipp3/protocols/protocol_projmatch 2026-03-01T17:45:54,056 copying xmipp3/protocols/protocol_projmatch/projmatch_initialize.py -> build/lib/xmipp3/protocols/protocol_projmatch 2026-03-01T17:45:54,059 creating build/lib/xmipp3/protocols/protocol_preprocess 2026-03-01T17:45:54,061 copying xmipp3/protocols/protocol_preprocess/protocol_crop_resize.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-03-01T17:45:54,064 copying xmipp3/protocols/protocol_preprocess/__init__.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-03-01T17:45:54,066 copying xmipp3/protocols/protocol_preprocess/protocol_movie_resize.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-03-01T17:45:54,069 copying xmipp3/protocols/protocol_preprocess/protocol_image_operate.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-03-01T17:45:54,072 copying xmipp3/protocols/protocol_preprocess/protocol_create_mask2d.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-03-01T17:45:54,074 copying xmipp3/protocols/protocol_preprocess/protocol_process.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-03-01T17:45:54,077 copying xmipp3/protocols/protocol_preprocess/protocol_filter.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-03-01T17:45:54,081 copying xmipp3/protocols/protocol_preprocess/protocol_add_noise.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-03-01T17:45:54,083 copying xmipp3/protocols/protocol_preprocess/protocol_create_mask3d.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-03-01T17:45:54,086 copying xmipp3/protocols/protocol_preprocess/protocol_preprocess.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-03-01T17:45:54,090 copying xmipp3/protocols/protocol_preprocess/geometrical_mask.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-03-01T17:45:54,092 copying xmipp3/protocols/protocol_preprocess/protocol_mask.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-03-01T17:45:54,096 creating build/lib/xmipp3/legacy/protocols 2026-03-01T17:45:54,097 copying xmipp3/legacy/protocols/protocol_deep_align.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T17:45:54,101 copying xmipp3/legacy/protocols/protocol_metaprotocol_golden_highres.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T17:45:54,104 copying xmipp3/legacy/protocols/protocol_reconstruct_heterogeneous.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T17:45:54,108 copying xmipp3/legacy/protocols/protocol_subtract_projection.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T17:45:54,111 copying xmipp3/legacy/protocols/protocol_metaprotocol_discrete_heterogeneity_scheduler.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T17:45:54,114 copying xmipp3/legacy/protocols/protocol_apply_deformation_zernike3d.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T17:45:54,116 copying xmipp3/legacy/protocols/protocol_extract_particles_movies.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T17:45:54,119 copying xmipp3/legacy/protocols/__init__.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T17:45:54,121 copying xmipp3/legacy/protocols/protocol_classification_gpuCorr.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T17:45:54,125 copying xmipp3/legacy/protocols/protocol_movie_average.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T17:45:54,127 copying xmipp3/legacy/protocols/protocol_particle_boxsize.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T17:45:54,130 copying xmipp3/legacy/protocols/protocol_classification_gpuCorr_semi.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T17:45:54,133 copying xmipp3/legacy/protocols/protocol_classify_kmeans2d.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T17:45:54,136 copying xmipp3/legacy/protocols/protocol_solid_angles.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T17:45:54,139 copying xmipp3/legacy/protocols/protocol_rotational_spectra.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T17:45:54,143 copying xmipp3/legacy/protocols/protocol_mltomo.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T17:45:54,146 copying xmipp3/legacy/protocols/protocol_deep_center_predict.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T17:45:54,148 copying xmipp3/legacy/protocols/protocol_metaprotocol_create_subset.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T17:45:54,151 copying xmipp3/legacy/protocols/protocol_classification_gpuCorr_full.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T17:45:54,155 copying xmipp3/legacy/protocols/protocol_screen_deeplearning.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T17:45:54,158 copying xmipp3/legacy/protocols/protocol_deep_denoising.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T17:45:54,161 copying xmipp3/legacy/protocols/protocol_metaprotocol_create_output.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T17:45:54,163 copying xmipp3/legacy/protocols/protocol_enrich.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T17:45:54,166 copying xmipp3/legacy/protocols/protocol_angular_resolution_alignment.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T17:45:54,170 copying xmipp3/legacy/protocols/protocol_split_volume.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T17:45:54,172 copying xmipp3/legacy/protocols/protocol_split_volume_hierarchical_cluster.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T17:45:54,176 copying xmipp3/legacy/protocols/protocol_deep_center.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T17:45:54,179 copying xmipp3/legacy/protocols/protocol_kmeans_clustering.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T17:45:54,182 copying xmipp3/legacy/protocols/protocol_movie_opticalflow.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T17:45:54,185 creating build/lib/xmipp3/legacy/viewers 2026-03-01T17:45:54,187 copying xmipp3/legacy/viewers/viewer_metaprotocol_golden_highres.py -> build/lib/xmipp3/legacy/viewers 2026-03-01T17:45:54,190 copying xmipp3/legacy/viewers/viewer_split_volume.py -> build/lib/xmipp3/legacy/viewers 2026-03-01T17:45:54,192 copying xmipp3/legacy/viewers/viewer_angular_resolution_alignment.py -> build/lib/xmipp3/legacy/viewers 2026-03-01T17:45:54,194 copying xmipp3/legacy/viewers/viewer_deep_align.py -> build/lib/xmipp3/legacy/viewers 2026-03-01T17:45:54,197 copying xmipp3/legacy/viewers/viewer_solid_angles.py -> build/lib/xmipp3/legacy/viewers 2026-03-01T17:45:54,200 copying xmipp3/legacy/viewers/viewer_mltomo.py -> build/lib/xmipp3/legacy/viewers 2026-03-01T17:45:54,203 creating build/lib/xmipp3/legacy/tests 2026-03-01T17:45:54,204 copying xmipp3/legacy/tests/test_protocol_deep_denoising.py -> build/lib/xmipp3/legacy/tests 2026-03-01T17:45:54,206 copying xmipp3/legacy/tests/test_protocols_gpuCorr_classifier.py -> build/lib/xmipp3/legacy/tests 2026-03-01T17:45:54,209 copying xmipp3/legacy/tests/test_protocols_subtract_projection.py -> build/lib/xmipp3/legacy/tests 2026-03-01T17:45:54,213 copying xmipp3/legacy/tests/test_protocols_gpuCorr_semiStreaming.py -> build/lib/xmipp3/legacy/tests 2026-03-01T17:45:54,215 copying xmipp3/legacy/tests/test_protocols_xmipp_movies.py -> build/lib/xmipp3/legacy/tests 2026-03-01T17:45:54,218 copying xmipp3/legacy/tests/test_protocols_mixed_movies.py -> build/lib/xmipp3/legacy/tests 2026-03-01T17:45:54,220 copying xmipp3/legacy/tests/test_protocols_solid_angles.py -> build/lib/xmipp3/legacy/tests 2026-03-01T17:45:54,222 copying xmipp3/legacy/tests/test_protocols_metaprotocol_golden_highres.py -> build/lib/xmipp3/legacy/tests 2026-03-01T17:45:54,225 copying xmipp3/legacy/tests/test_protocols_gpuCorr_fullStreaming.py -> build/lib/xmipp3/legacy/tests 2026-03-01T17:45:54,227 copying xmipp3/legacy/tests/test_protocols_angular_resolution_alignment.py -> build/lib/xmipp3/legacy/tests 2026-03-01T17:45:54,230 copying xmipp3/legacy/tests/test_protocols_metaprotocol_heterogeneity.py -> build/lib/xmipp3/legacy/tests 2026-03-01T17:45:54,232 running egg_info 2026-03-01T17:45:54,242 writing scipion_em_xmipp.egg-info/PKG-INFO 2026-03-01T17:45:54,245 writing dependency_links to scipion_em_xmipp.egg-info/dependency_links.txt 2026-03-01T17:45:54,247 writing entry points to scipion_em_xmipp.egg-info/entry_points.txt 2026-03-01T17:45:54,249 writing requirements to scipion_em_xmipp.egg-info/requires.txt 2026-03-01T17:45:54,250 writing top-level names to scipion_em_xmipp.egg-info/top_level.txt 2026-03-01T17:45:54,277 reading manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt' 2026-03-01T17:45:54,291 reading manifest template 'MANIFEST.in' 2026-03-01T17:45:54,294 adding license file 'LICENSE' 2026-03-01T17:45:54,307 writing manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt' 2026-03-01T17:45:54,317 copying xmipp3/protocols.conf -> build/lib/xmipp3 2026-03-01T17:45:54,320 copying xmipp3/xmipp_logo.png -> build/lib/xmipp3 2026-03-01T17:45:54,324 copying xmipp3/xmipp_logo_devel.png -> build/lib/xmipp3 2026-03-01T17:45:54,380 installing to build/bdist.linux-armv7l/wheel 2026-03-01T17:45:54,381 running install 2026-03-01T17:45:54,409 running install_lib 2026-03-01T17:45:54,416 creating build/bdist.linux-armv7l/wheel 2026-03-01T17:45:54,419 creating build/bdist.linux-armv7l/wheel/xmipp3 2026-03-01T17:45:54,420 copying build/lib/xmipp3/programs.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-03-01T17:45:54,423 copying build/lib/xmipp3/bibtex.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-03-01T17:45:54,427 copying build/lib/xmipp3/protocolsCollectInfo.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-03-01T17:45:54,430 creating build/bdist.linux-armv7l/wheel/xmipp3/convert 2026-03-01T17:45:54,432 copying build/lib/xmipp3/convert/convert.py -> build/bdist.linux-armv7l/wheel/./xmipp3/convert 2026-03-01T17:45:54,436 copying build/lib/xmipp3/convert/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/convert 2026-03-01T17:45:54,438 copying build/lib/xmipp3/convert/dataimport.py -> build/bdist.linux-armv7l/wheel/./xmipp3/convert 2026-03-01T17:45:54,442 copying build/lib/xmipp3/convert/io_coordinates.py -> build/bdist.linux-armv7l/wheel/./xmipp3/convert 2026-03-01T17:45:54,444 copying build/lib/xmipp3/xmipp_logo.png -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-03-01T17:45:54,448 copying build/lib/xmipp3/checkProtocolsConf.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-03-01T17:45:54,451 copying build/lib/xmipp3/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-03-01T17:45:54,454 copying build/lib/xmipp3/constants.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-03-01T17:45:54,456 copying build/lib/xmipp3/protocols.conf -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-03-01T17:45:54,461 creating build/bdist.linux-armv7l/wheel/xmipp3/protocols 2026-03-01T17:45:54,462 copying build/lib/xmipp3/protocols/protocol_resolution_fso.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,465 copying build/lib/xmipp3/protocols/protocol_align_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,469 copying build/lib/xmipp3/protocols/protocol_phantom_create.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,472 copying build/lib/xmipp3/protocols/protocol_apply_tilt_to_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,474 copying build/lib/xmipp3/protocols/protocol_extract_particles_pairs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,478 copying build/lib/xmipp3/protocols/protocol_ctf_correct_phase.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,480 copying build/lib/xmipp3/protocols/protocol_resolution_deepres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,483 copying build/lib/xmipp3/protocols/protocol_movie_max_shift.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,486 copying build/lib/xmipp3/protocols/protocol_compute_likelihood.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,489 copying build/lib/xmipp3/protocols/protocol_flexalign.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,492 copying build/lib/xmipp3/protocols/protocol_subtract_projection.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,495 copying build/lib/xmipp3/protocols/protocol_shift_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,498 copying build/lib/xmipp3/protocols/protocol_alignPCA_2D.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,500 copying build/lib/xmipp3/protocols/protocol_align_volume_and_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,503 copying build/lib/xmipp3/protocols/protocol_reconstruct_significant.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,505 copying build/lib/xmipp3/protocols/protocol_convert_pdb.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,508 copying build/lib/xmipp3/protocols/protocol_apply_transformation_matrix.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,510 copying build/lib/xmipp3/protocols/protocol_resolution_monogenic_signal.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,514 copying build/lib/xmipp3/protocols/protocol_multiple_fscs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,516 copying build/lib/xmipp3/protocols/protocol_movie_gain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,519 copying build/lib/xmipp3/protocols/protocol_ml2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,521 copying build/lib/xmipp3/protocols/protocol_ransac.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,525 copying build/lib/xmipp3/protocols/protocol_particle_pick_pairs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,527 copying build/lib/xmipp3/protocols/protocol_reconstruct_swarm.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,529 copying build/lib/xmipp3/protocols/protocol_generate_reprojections.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,532 copying build/lib/xmipp3/protocols/protocol_preprocess_micrographs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,535 copying build/lib/xmipp3/protocols/protocol_normalize_strain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,537 copying build/lib/xmipp3/protocols/protocol_helical_parameters.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,539 copying build/lib/xmipp3/protocols/protocol_write_testP.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,542 copying build/lib/xmipp3/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,544 copying build/lib/xmipp3/protocols/protocol_volume_strain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,546 copying build/lib/xmipp3/protocols/protocol_volume_deform_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,548 copying build/lib/xmipp3/protocols/protocol_compare_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,550 copying build/lib/xmipp3/protocols/protocol_resolution_directional.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,553 copying build/lib/xmipp3/protocols/protocol_volume_local_adjust.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,555 copying build/lib/xmipp3/protocols/protocol_core_analysis.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,557 copying build/lib/xmipp3/protocols/protocol_particle_pick_remove_duplicates.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,560 copying build/lib/xmipp3/protocols/protocol_movie_alignment_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,562 copying build/lib/xmipp3/protocols/protocol_compare_reprojections.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,565 copying build/lib/xmipp3/protocols/protocol_apply_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,567 copying build/lib/xmipp3/protocols/protocol_cl2d_align.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,570 copying build/lib/xmipp3/protocols/protocol_assignment_tilt_pair.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,572 copying build/lib/xmipp3/protocols/protocol_ctf_micrographs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,575 copying build/lib/xmipp3/protocols/protocol_rotate_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,577 copying build/lib/xmipp3/protocols/protocol_particle_pick_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,580 copying build/lib/xmipp3/protocols/protocol_consensus_local_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,582 copying build/lib/xmipp3/protocols/protocol_mics_defocus_balancer.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,585 copying build/lib/xmipp3/protocols/protocol_kerdensom.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,588 copying build/lib/xmipp3/protocols/protocol_reconstruct_fourier.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,591 copying build/lib/xmipp3/protocols/protocol_screen_deepConsensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,594 copying build/lib/xmipp3/protocols/protocol_movie_split_frames.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,597 copying build/lib/xmipp3/protocols/protocol_rotational_symmetry.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,599 copying build/lib/xmipp3/protocols/protocol_deep_hand.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,602 copying build/lib/xmipp3/protocols/protocol_analyze_local_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,604 copying build/lib/xmipp3/protocols/protocol_volume_adjust_sub.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,608 copying build/lib/xmipp3/protocols/protocol_resolution3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,612 copying build/lib/xmipp3/protocols/protocol_validate_overfitting.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,614 copying build/lib/xmipp3/protocols/protocol_particle_pick.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,617 copying build/lib/xmipp3/protocols/protocol_screen_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,620 copying build/lib/xmipp3/protocols/protocol_classes_2d_mapping.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,624 copying build/lib/xmipp3/protocols/protocol_ctf_defocus_group.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,627 copying build/lib/xmipp3/protocols/protocol_ctf_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,630 copying build/lib/xmipp3/protocols/protocol_structure_map_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,633 copying build/lib/xmipp3/protocols/protocol_write_testC.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,635 copying build/lib/xmipp3/protocols/protocol_deep_micrograph_screen.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,638 copying build/lib/xmipp3/protocols/protocol_structure_map.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,640 copying build/lib/xmipp3/protocols/protocol_validate_nontilt.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,642 copying build/lib/xmipp3/protocols/protocol_trigger_data.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,645 copying build/lib/xmipp3/protocols/protocol_ctf_correct_wiener2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,648 copying build/lib/xmipp3/protocols/protocol_denoise_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,651 copying build/lib/xmipp3/protocols/protocol_cl2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,654 copying build/lib/xmipp3/protocols/protocol_movie_dose_analysis.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,656 copying build/lib/xmipp3/protocols/protocol_extract_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,659 copying build/lib/xmipp3/protocols/protocol_consensus_classes.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,662 copying build/lib/xmipp3/protocols/protocol_eliminate_empty_images.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,665 copying build/lib/xmipp3/protocols/protocol_shift_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,668 copying build/lib/xmipp3/protocols/protocol_reconstruct_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,673 copying build/lib/xmipp3/protocols/protocol_random_conical_tilt.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,677 creating build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_projmatch 2026-03-01T17:45:54,678 copying build/lib/xmipp3/protocols/protocol_projmatch/projmatch_steps.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch 2026-03-01T17:45:54,681 copying build/lib/xmipp3/protocols/protocol_projmatch/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch 2026-03-01T17:45:54,683 copying build/lib/xmipp3/protocols/protocol_projmatch/projmatch_form.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch 2026-03-01T17:45:54,687 copying build/lib/xmipp3/protocols/protocol_projmatch/protocol_projmatch.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch 2026-03-01T17:45:54,689 copying build/lib/xmipp3/protocols/protocol_projmatch/projmatch_initialize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch 2026-03-01T17:45:54,692 copying build/lib/xmipp3/protocols/protocol_cl2d_clustering.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,694 copying build/lib/xmipp3/protocols/protocol_angular_graph_consistency.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,698 creating build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_preprocess 2026-03-01T17:45:54,700 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_crop_resize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-03-01T17:45:54,703 copying build/lib/xmipp3/protocols/protocol_preprocess/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-03-01T17:45:54,705 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_movie_resize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-03-01T17:45:54,708 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_image_operate.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-03-01T17:45:54,710 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_create_mask2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-03-01T17:45:54,713 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_process.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-03-01T17:45:54,715 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_filter.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-03-01T17:45:54,718 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_add_noise.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-03-01T17:45:54,721 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_create_mask3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-03-01T17:45:54,724 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_preprocess.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-03-01T17:45:54,727 copying build/lib/xmipp3/protocols/protocol_preprocess/geometrical_mask.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-03-01T17:45:54,730 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_mask.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-03-01T17:45:54,732 copying build/lib/xmipp3/protocols/protocol_tilt_analysis.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,735 copying build/lib/xmipp3/protocols/protocol_pick_noise.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,738 copying build/lib/xmipp3/protocols/protocol_multireference_alignability.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,741 copying build/lib/xmipp3/protocols/protocol_create_gallery.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,744 copying build/lib/xmipp3/protocols/protocol_extract_asymmetric_unit.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,746 copying build/lib/xmipp3/protocols/protocol_volume_local_sharpening.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,749 copying build/lib/xmipp3/protocols/protocol_particle_pick_automatic.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,752 copying build/lib/xmipp3/protocols/protocol_break_symmetry.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,754 copying build/lib/xmipp3/protocols/protocol_simulate_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,756 copying build/lib/xmipp3/protocols/protocol_validate_fscq.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,759 copying build/lib/xmipp3/protocols/protocol_resolution_bfactor.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,762 copying build/lib/xmipp3/protocols/protocol_postProcessing_deepPostProcessing.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,764 copying build/lib/xmipp3/protocols/protocol_local_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,766 copying build/lib/xmipp3/protocols/protocol_center_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,769 copying build/lib/xmipp3/protocols/protocol_apply_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,771 copying build/lib/xmipp3/protocols/protocol_volume_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T17:45:54,773 copying build/lib/xmipp3/version.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-03-01T17:45:54,775 copying build/lib/xmipp3/base.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-03-01T17:45:54,778 copying build/lib/xmipp3/wizards.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-03-01T17:45:54,781 creating build/bdist.linux-armv7l/wheel/xmipp3/legacy 2026-03-01T17:45:54,782 copying build/lib/xmipp3/legacy/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy 2026-03-01T17:45:54,784 creating build/bdist.linux-armv7l/wheel/xmipp3/legacy/protocols 2026-03-01T17:45:54,785 copying build/lib/xmipp3/legacy/protocols/protocol_deep_align.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T17:45:54,788 copying build/lib/xmipp3/legacy/protocols/protocol_metaprotocol_golden_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T17:45:54,791 copying build/lib/xmipp3/legacy/protocols/protocol_reconstruct_heterogeneous.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T17:45:54,794 copying build/lib/xmipp3/legacy/protocols/protocol_subtract_projection.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T17:45:54,796 copying build/lib/xmipp3/legacy/protocols/protocol_metaprotocol_discrete_heterogeneity_scheduler.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T17:45:54,798 copying build/lib/xmipp3/legacy/protocols/protocol_apply_deformation_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T17:45:54,801 copying build/lib/xmipp3/legacy/protocols/protocol_extract_particles_movies.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T17:45:54,803 copying build/lib/xmipp3/legacy/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T17:45:54,805 copying build/lib/xmipp3/legacy/protocols/protocol_classification_gpuCorr.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T17:45:54,807 copying build/lib/xmipp3/legacy/protocols/protocol_movie_average.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T17:45:54,810 copying build/lib/xmipp3/legacy/protocols/protocol_particle_boxsize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T17:45:54,812 copying build/lib/xmipp3/legacy/protocols/protocol_classification_gpuCorr_semi.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T17:45:54,814 copying build/lib/xmipp3/legacy/protocols/protocol_classify_kmeans2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T17:45:54,817 copying build/lib/xmipp3/legacy/protocols/protocol_solid_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T17:45:54,822 copying build/lib/xmipp3/legacy/protocols/protocol_rotational_spectra.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T17:45:54,824 copying build/lib/xmipp3/legacy/protocols/protocol_mltomo.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T17:45:54,826 copying build/lib/xmipp3/legacy/protocols/protocol_deep_center_predict.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T17:45:54,829 copying build/lib/xmipp3/legacy/protocols/protocol_metaprotocol_create_subset.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T17:45:54,831 copying build/lib/xmipp3/legacy/protocols/protocol_classification_gpuCorr_full.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T17:45:54,833 copying build/lib/xmipp3/legacy/protocols/protocol_screen_deeplearning.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T17:45:54,836 copying build/lib/xmipp3/legacy/protocols/protocol_deep_denoising.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T17:45:54,839 copying build/lib/xmipp3/legacy/protocols/protocol_metaprotocol_create_output.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T17:45:54,841 copying build/lib/xmipp3/legacy/protocols/protocol_enrich.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T17:45:54,843 copying build/lib/xmipp3/legacy/protocols/protocol_angular_resolution_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T17:45:54,845 copying build/lib/xmipp3/legacy/protocols/protocol_split_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T17:45:54,848 copying build/lib/xmipp3/legacy/protocols/protocol_split_volume_hierarchical_cluster.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T17:45:54,851 copying build/lib/xmipp3/legacy/protocols/protocol_deep_center.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T17:45:54,853 copying build/lib/xmipp3/legacy/protocols/protocol_kmeans_clustering.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T17:45:54,855 copying build/lib/xmipp3/legacy/protocols/protocol_movie_opticalflow.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T17:45:54,858 creating build/bdist.linux-armv7l/wheel/xmipp3/legacy/viewers 2026-03-01T17:45:54,859 copying build/lib/xmipp3/legacy/viewers/viewer_metaprotocol_golden_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers 2026-03-01T17:45:54,862 copying build/lib/xmipp3/legacy/viewers/viewer_split_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers 2026-03-01T17:45:54,864 copying build/lib/xmipp3/legacy/viewers/viewer_angular_resolution_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers 2026-03-01T17:45:54,866 copying build/lib/xmipp3/legacy/viewers/viewer_deep_align.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers 2026-03-01T17:45:54,868 copying build/lib/xmipp3/legacy/viewers/viewer_solid_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers 2026-03-01T17:45:54,870 copying build/lib/xmipp3/legacy/viewers/viewer_mltomo.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers 2026-03-01T17:45:54,873 creating build/bdist.linux-armv7l/wheel/xmipp3/legacy/tests 2026-03-01T17:45:54,874 copying build/lib/xmipp3/legacy/tests/test_protocol_deep_denoising.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-03-01T17:45:54,876 copying build/lib/xmipp3/legacy/tests/test_protocols_gpuCorr_classifier.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-03-01T17:45:54,878 copying build/lib/xmipp3/legacy/tests/test_protocols_subtract_projection.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-03-01T17:45:54,881 copying build/lib/xmipp3/legacy/tests/test_protocols_gpuCorr_semiStreaming.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-03-01T17:45:54,883 copying build/lib/xmipp3/legacy/tests/test_protocols_xmipp_movies.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-03-01T17:45:54,885 copying build/lib/xmipp3/legacy/tests/test_protocols_mixed_movies.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-03-01T17:45:54,887 copying build/lib/xmipp3/legacy/tests/test_protocols_solid_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-03-01T17:45:54,889 copying build/lib/xmipp3/legacy/tests/test_protocols_metaprotocol_golden_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-03-01T17:45:54,891 copying build/lib/xmipp3/legacy/tests/test_protocols_gpuCorr_fullStreaming.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-03-01T17:45:54,894 copying build/lib/xmipp3/legacy/tests/test_protocols_angular_resolution_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-03-01T17:45:54,895 copying build/lib/xmipp3/legacy/tests/test_protocols_metaprotocol_heterogeneity.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-03-01T17:45:54,898 creating build/bdist.linux-armv7l/wheel/xmipp3/viewers 2026-03-01T17:45:54,899 copying build/lib/xmipp3/viewers/viewer_resolution3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T17:45:54,902 copying build/lib/xmipp3/viewers/viewer_swarm.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T17:45:54,904 copying build/lib/xmipp3/viewers/plotter.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T17:45:54,906 copying build/lib/xmipp3/viewers/viewer_normalize_strain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T17:45:54,908 copying build/lib/xmipp3/viewers/viewer_consensus_classes.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T17:45:54,910 copying build/lib/xmipp3/viewers/viewer_resolution_deepres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T17:45:54,912 copying build/lib/xmipp3/viewers/viewer_validate_overfitting.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T17:45:54,915 copying build/lib/xmipp3/viewers/viewer_analyze_local_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T17:45:54,917 copying build/lib/xmipp3/viewers/viewer_projmatch.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T17:45:54,920 copying build/lib/xmipp3/viewers/viewer_deep_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T17:45:54,922 copying build/lib/xmipp3/viewers/viewer_volume_strain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T17:45:54,924 copying build/lib/xmipp3/viewers/viewer_resolution_bfactor.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T17:45:54,926 copying build/lib/xmipp3/viewers/viewer_deep_micrograph_cleaner.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T17:45:54,929 copying build/lib/xmipp3/viewers/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T17:45:54,930 copying build/lib/xmipp3/viewers/viewer_subtract_projection.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T17:45:54,932 copying build/lib/xmipp3/viewers/viewer_ctf_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T17:45:54,935 copying build/lib/xmipp3/viewers/viewer_resolution_fso.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T17:45:54,937 copying build/lib/xmipp3/viewers/viewer_dose_analysis.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T17:45:54,940 copying build/lib/xmipp3/viewers/viewer_reconstruct_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T17:45:54,942 copying build/lib/xmipp3/viewers/viewer_volume_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T17:45:54,944 copying build/lib/xmipp3/viewers/viewer_cl2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T17:45:54,946 copying build/lib/xmipp3/viewers/viewer_LL_matrix.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T17:45:54,949 copying build/lib/xmipp3/viewers/viewer_deepEMHancer.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T17:45:54,951 copying build/lib/xmipp3/viewers/viewer_extract_asymmetric_unit.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T17:45:54,954 copying build/lib/xmipp3/viewers/viewer_structure_map.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T17:45:54,956 copying build/lib/xmipp3/viewers/viewer.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T17:45:54,959 copying build/lib/xmipp3/viewers/viewer_eliminate_empty_images.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T17:45:54,961 copying build/lib/xmipp3/viewers/viewer_volume_deform_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T17:45:54,964 copying build/lib/xmipp3/viewers/viewer_cl2d_clustering.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T17:45:54,966 copying build/lib/xmipp3/viewers/viewer_local_sharpening.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T17:45:54,968 copying build/lib/xmipp3/viewers/viewer_apply_tilt_to_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T17:45:54,970 copying build/lib/xmipp3/viewers/viewer_pdb_deform_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T17:45:54,972 copying build/lib/xmipp3/viewers/viewer_validate_nontilt.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T17:45:54,974 copying build/lib/xmipp3/viewers/viewer_ml2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T17:45:54,976 copying build/lib/xmipp3/viewers/viewer_volume_subtraction.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T17:45:54,979 copying build/lib/xmipp3/viewers/viewer_validate_fscq.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T17:45:54,981 copying build/lib/xmipp3/viewers/viewer_movie_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T17:45:54,984 copying build/lib/xmipp3/viewers/viewer_resolution_directional.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T17:45:54,986 copying build/lib/xmipp3/viewers/viewer_ransac.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T17:45:54,988 copying build/lib/xmipp3/viewers/viewer_resolution_monogenic_signal.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T17:45:54,991 copying build/lib/xmipp3/xmipp_logo_devel.png -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-03-01T17:45:55,004 copying build/lib/xmipp3/logParser.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-03-01T17:45:55,006 copying build/lib/xmipp3/utils.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-03-01T17:45:55,009 creating build/bdist.linux-armv7l/wheel/xmipp3/tests 2026-03-01T17:45:55,011 copying build/lib/xmipp3/tests/test_protocol_validate_overfitting.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T17:45:55,013 copying build/lib/xmipp3/tests/test_protocol_consensus_classes3D.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T17:45:55,016 copying build/lib/xmipp3/tests/test_protocol_screen_deepConsensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T17:45:55,018 copying build/lib/xmipp3/tests/test_protocol_compare_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T17:45:55,021 copying build/lib/xmipp3/tests/test_protocols_deepres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T17:45:55,023 copying build/lib/xmipp3/tests/test_protocols_deepVolPostprocessing.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T17:45:55,025 copying build/lib/xmipp3/tests/test_protocols_fso.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T17:45:55,028 copying build/lib/xmipp3/tests/test_protocol_angular_graph_consistency.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T17:45:55,031 copying build/lib/xmipp3/tests/test_protocol_simulate_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T17:45:55,033 copying build/lib/xmipp3/tests/test_protocol_likelihood.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T17:45:55,035 copying build/lib/xmipp3/tests/test_protocol_monodir.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T17:45:55,038 copying build/lib/xmipp3/tests/test_protocol_reconstruct_fourier.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T17:45:55,040 copying build/lib/xmipp3/tests/test_protocols_local_defocus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T17:45:55,042 copying build/lib/xmipp3/tests/test_protocols_xmipp_2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T17:45:55,046 copying build/lib/xmipp3/tests/test_protocols_xmipp_movies.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T17:45:55,049 copying build/lib/xmipp3/tests/test_protocols_monores.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T17:45:55,052 copying build/lib/xmipp3/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T17:45:55,054 copying build/lib/xmipp3/tests/test_protocols_xmipp_3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T17:45:55,058 copying build/lib/xmipp3/tests/test_protocols_localdeblur.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T17:45:55,060 copying build/lib/xmipp3/tests/test_convert_xmipp.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T17:45:55,064 copying build/lib/xmipp3/tests/test_protocols_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T17:45:55,066 copying build/lib/xmipp3/tests/test_protocols_add_noise.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T17:45:55,069 copying build/lib/xmipp3/tests/test_protocols_continuousflex.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T17:45:55,072 copying build/lib/xmipp3/tests/test_protocols_xmipp_movie_resize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T17:45:55,075 copying build/lib/xmipp3/tests/test_protocol_ctf_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T17:45:55,077 copying build/lib/xmipp3/tests/test_protocol_validate_fscq.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T17:45:55,080 copying build/lib/xmipp3/tests/test_protocols_deepcenter_predict.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T17:45:55,082 copying build/lib/xmipp3/tests/test_protocol_extract_asymmetric_unit.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T17:45:55,085 copying build/lib/xmipp3/tests/test_protocol_split_frames.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T17:45:55,088 copying build/lib/xmipp3/tests/test_protocols_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T17:45:55,091 copying build/lib/xmipp3/tests/test_protocol_multireference_alignability.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T17:45:55,094 copying build/lib/xmipp3/tests/test_protocols_realignment_classes.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T17:45:55,096 copying build/lib/xmipp3/tests/test_protocols_xmipp_mics.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T17:45:55,100 copying build/lib/xmipp3/tests/test_protocol_multiple_fsc.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T17:45:55,103 copying build/lib/xmipp3/tests/test_protocol_apply_transformation_matrix.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T17:45:55,106 running install_egg_info 2026-03-01T17:45:55,111 Copying scipion_em_xmipp.egg-info to build/bdist.linux-armv7l/wheel/./scipion_em_xmipp-28.0.0-py3.11.egg-info 2026-03-01T17:45:55,123 running install_scripts 2026-03-01T17:45:55,136 creating build/bdist.linux-armv7l/wheel/scipion_em_xmipp-28.0.0.dist-info/WHEEL 2026-03-01T17:45:55,139 creating '/tmp/pip-wheel-agdpp0_4/.tmp-7zegmxbt/scipion_em_xmipp-28.0.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-03-01T17:45:55,148 adding 'scipion_em_xmipp-28.0.0.dist-info/licenses/LICENSE' 2026-03-01T17:45:55,151 adding 'xmipp3/__init__.py' 2026-03-01T17:45:55,155 adding 'xmipp3/base.py' 2026-03-01T17:45:55,159 adding 'xmipp3/bibtex.py' 2026-03-01T17:45:55,161 adding 'xmipp3/checkProtocolsConf.py' 2026-03-01T17:45:55,162 adding 'xmipp3/constants.py' 2026-03-01T17:45:55,164 adding 'xmipp3/logParser.py' 2026-03-01T17:45:55,167 adding 'xmipp3/programs.py' 2026-03-01T17:45:55,169 adding 'xmipp3/protocols.conf' 2026-03-01T17:45:55,171 adding 'xmipp3/protocolsCollectInfo.py' 2026-03-01T17:45:55,174 adding 'xmipp3/utils.py' 2026-03-01T17:45:55,176 adding 'xmipp3/version.py' 2026-03-01T17:45:55,178 adding 'xmipp3/wizards.py' 2026-03-01T17:45:55,190 adding 'xmipp3/xmipp_logo.png' 2026-03-01T17:45:55,317 adding 'xmipp3/xmipp_logo_devel.png' 2026-03-01T17:45:55,324 adding 'xmipp3/convert/__init__.py' 2026-03-01T17:45:55,332 adding 'xmipp3/convert/convert.py' 2026-03-01T17:45:55,335 adding 'xmipp3/convert/dataimport.py' 2026-03-01T17:45:55,337 adding 'xmipp3/convert/io_coordinates.py' 2026-03-01T17:45:55,339 adding 'xmipp3/legacy/__init__.py' 2026-03-01T17:45:55,341 adding 'xmipp3/legacy/protocols/__init__.py' 2026-03-01T17:45:55,343 adding 'xmipp3/legacy/protocols/protocol_angular_resolution_alignment.py' 2026-03-01T17:45:55,345 adding 'xmipp3/legacy/protocols/protocol_apply_deformation_zernike3d.py' 2026-03-01T17:45:55,349 adding 'xmipp3/legacy/protocols/protocol_classification_gpuCorr.py' 2026-03-01T17:45:55,355 adding 'xmipp3/legacy/protocols/protocol_classification_gpuCorr_full.py' 2026-03-01T17:45:55,358 adding 'xmipp3/legacy/protocols/protocol_classification_gpuCorr_semi.py' 2026-03-01T17:45:55,361 adding 'xmipp3/legacy/protocols/protocol_classify_kmeans2d.py' 2026-03-01T17:45:55,366 adding 'xmipp3/legacy/protocols/protocol_deep_align.py' 2026-03-01T17:45:55,368 adding 'xmipp3/legacy/protocols/protocol_deep_center.py' 2026-03-01T17:45:55,370 adding 'xmipp3/legacy/protocols/protocol_deep_center_predict.py' 2026-03-01T17:45:55,373 adding 'xmipp3/legacy/protocols/protocol_deep_denoising.py' 2026-03-01T17:45:55,376 adding 'xmipp3/legacy/protocols/protocol_enrich.py' 2026-03-01T17:45:55,380 adding 'xmipp3/legacy/protocols/protocol_extract_particles_movies.py' 2026-03-01T17:45:55,382 adding 'xmipp3/legacy/protocols/protocol_kmeans_clustering.py' 2026-03-01T17:45:55,384 adding 'xmipp3/legacy/protocols/protocol_metaprotocol_create_output.py' 2026-03-01T17:45:55,386 adding 'xmipp3/legacy/protocols/protocol_metaprotocol_create_subset.py' 2026-03-01T17:45:55,389 adding 'xmipp3/legacy/protocols/protocol_metaprotocol_discrete_heterogeneity_scheduler.py' 2026-03-01T17:45:55,393 adding 'xmipp3/legacy/protocols/protocol_metaprotocol_golden_highres.py' 2026-03-01T17:45:55,396 adding 'xmipp3/legacy/protocols/protocol_mltomo.py' 2026-03-01T17:45:55,399 adding 'xmipp3/legacy/protocols/protocol_movie_average.py' 2026-03-01T17:45:55,402 adding 'xmipp3/legacy/protocols/protocol_movie_opticalflow.py' 2026-03-01T17:45:55,404 adding 'xmipp3/legacy/protocols/protocol_particle_boxsize.py' 2026-03-01T17:45:55,409 adding 'xmipp3/legacy/protocols/protocol_reconstruct_heterogeneous.py' 2026-03-01T17:45:55,412 adding 'xmipp3/legacy/protocols/protocol_rotational_spectra.py' 2026-03-01T17:45:55,415 adding 'xmipp3/legacy/protocols/protocol_screen_deeplearning.py' 2026-03-01T17:45:55,419 adding 'xmipp3/legacy/protocols/protocol_solid_angles.py' 2026-03-01T17:45:55,421 adding 'xmipp3/legacy/protocols/protocol_split_volume.py' 2026-03-01T17:45:55,425 adding 'xmipp3/legacy/protocols/protocol_split_volume_hierarchical_cluster.py' 2026-03-01T17:45:55,428 adding 'xmipp3/legacy/protocols/protocol_subtract_projection.py' 2026-03-01T17:45:55,430 adding 'xmipp3/legacy/tests/test_protocol_deep_denoising.py' 2026-03-01T17:45:55,432 adding 'xmipp3/legacy/tests/test_protocols_angular_resolution_alignment.py' 2026-03-01T17:45:55,434 adding 'xmipp3/legacy/tests/test_protocols_gpuCorr_classifier.py' 2026-03-01T17:45:55,436 adding 'xmipp3/legacy/tests/test_protocols_gpuCorr_fullStreaming.py' 2026-03-01T17:45:55,438 adding 'xmipp3/legacy/tests/test_protocols_gpuCorr_semiStreaming.py' 2026-03-01T17:45:55,440 adding 'xmipp3/legacy/tests/test_protocols_metaprotocol_golden_highres.py' 2026-03-01T17:45:55,441 adding 'xmipp3/legacy/tests/test_protocols_metaprotocol_heterogeneity.py' 2026-03-01T17:45:55,443 adding 'xmipp3/legacy/tests/test_protocols_mixed_movies.py' 2026-03-01T17:45:55,445 adding 'xmipp3/legacy/tests/test_protocols_solid_angles.py' 2026-03-01T17:45:55,452 adding 'xmipp3/legacy/tests/test_protocols_subtract_projection.py' 2026-03-01T17:45:55,455 adding 'xmipp3/legacy/tests/test_protocols_xmipp_movies.py' 2026-03-01T17:45:55,457 adding 'xmipp3/legacy/viewers/viewer_angular_resolution_alignment.py' 2026-03-01T17:45:55,459 adding 'xmipp3/legacy/viewers/viewer_deep_align.py' 2026-03-01T17:45:55,461 adding 'xmipp3/legacy/viewers/viewer_metaprotocol_golden_highres.py' 2026-03-01T17:45:55,464 adding 'xmipp3/legacy/viewers/viewer_mltomo.py' 2026-03-01T17:45:55,466 adding 'xmipp3/legacy/viewers/viewer_solid_angles.py' 2026-03-01T17:45:55,467 adding 'xmipp3/legacy/viewers/viewer_split_volume.py' 2026-03-01T17:45:55,472 adding 'xmipp3/protocols/__init__.py' 2026-03-01T17:45:55,476 adding 'xmipp3/protocols/protocol_alignPCA_2D.py' 2026-03-01T17:45:55,479 adding 'xmipp3/protocols/protocol_align_volume.py' 2026-03-01T17:45:55,482 adding 'xmipp3/protocols/protocol_align_volume_and_particles.py' 2026-03-01T17:45:55,484 adding 'xmipp3/protocols/protocol_analyze_local_ctf.py' 2026-03-01T17:45:55,488 adding 'xmipp3/protocols/protocol_angular_graph_consistency.py' 2026-03-01T17:45:55,490 adding 'xmipp3/protocols/protocol_apply_alignment.py' 2026-03-01T17:45:55,492 adding 'xmipp3/protocols/protocol_apply_tilt_to_ctf.py' 2026-03-01T17:45:55,494 adding 'xmipp3/protocols/protocol_apply_transformation_matrix.py' 2026-03-01T17:45:55,496 adding 'xmipp3/protocols/protocol_apply_zernike3d.py' 2026-03-01T17:45:55,499 adding 'xmipp3/protocols/protocol_assignment_tilt_pair.py' 2026-03-01T17:45:55,501 adding 'xmipp3/protocols/protocol_break_symmetry.py' 2026-03-01T17:45:55,503 adding 'xmipp3/protocols/protocol_center_particles.py' 2026-03-01T17:45:55,507 adding 'xmipp3/protocols/protocol_cl2d.py' 2026-03-01T17:45:55,509 adding 'xmipp3/protocols/protocol_cl2d_align.py' 2026-03-01T17:45:55,512 adding 'xmipp3/protocols/protocol_cl2d_clustering.py' 2026-03-01T17:45:55,515 adding 'xmipp3/protocols/protocol_classes_2d_mapping.py' 2026-03-01T17:45:55,517 adding 'xmipp3/protocols/protocol_compare_angles.py' 2026-03-01T17:45:55,521 adding 'xmipp3/protocols/protocol_compare_reprojections.py' 2026-03-01T17:45:55,524 adding 'xmipp3/protocols/protocol_compute_likelihood.py' 2026-03-01T17:45:55,527 adding 'xmipp3/protocols/protocol_consensus_classes.py' 2026-03-01T17:45:55,530 adding 'xmipp3/protocols/protocol_consensus_local_ctf.py' 2026-03-01T17:45:55,533 adding 'xmipp3/protocols/protocol_convert_pdb.py' 2026-03-01T17:45:55,535 adding 'xmipp3/protocols/protocol_core_analysis.py' 2026-03-01T17:45:55,537 adding 'xmipp3/protocols/protocol_create_gallery.py' 2026-03-01T17:45:55,542 adding 'xmipp3/protocols/protocol_ctf_consensus.py' 2026-03-01T17:45:55,544 adding 'xmipp3/protocols/protocol_ctf_correct_phase.py' 2026-03-01T17:45:55,546 adding 'xmipp3/protocols/protocol_ctf_correct_wiener2d.py' 2026-03-01T17:45:55,549 adding 'xmipp3/protocols/protocol_ctf_defocus_group.py' 2026-03-01T17:45:55,552 adding 'xmipp3/protocols/protocol_ctf_micrographs.py' 2026-03-01T17:45:55,554 adding 'xmipp3/protocols/protocol_deep_hand.py' 2026-03-01T17:45:55,557 adding 'xmipp3/protocols/protocol_deep_micrograph_screen.py' 2026-03-01T17:45:55,559 adding 'xmipp3/protocols/protocol_denoise_particles.py' 2026-03-01T17:45:55,562 adding 'xmipp3/protocols/protocol_eliminate_empty_images.py' 2026-03-01T17:45:55,564 adding 'xmipp3/protocols/protocol_extract_asymmetric_unit.py' 2026-03-01T17:45:55,567 adding 'xmipp3/protocols/protocol_extract_particles.py' 2026-03-01T17:45:55,571 adding 'xmipp3/protocols/protocol_extract_particles_pairs.py' 2026-03-01T17:45:55,573 adding 'xmipp3/protocols/protocol_flexalign.py' 2026-03-01T17:45:55,575 adding 'xmipp3/protocols/protocol_generate_reprojections.py' 2026-03-01T17:45:55,577 adding 'xmipp3/protocols/protocol_helical_parameters.py' 2026-03-01T17:45:55,579 adding 'xmipp3/protocols/protocol_kerdensom.py' 2026-03-01T17:45:55,581 adding 'xmipp3/protocols/protocol_local_ctf.py' 2026-03-01T17:45:55,584 adding 'xmipp3/protocols/protocol_mics_defocus_balancer.py' 2026-03-01T17:45:55,586 adding 'xmipp3/protocols/protocol_ml2d.py' 2026-03-01T17:45:55,590 adding 'xmipp3/protocols/protocol_movie_alignment_consensus.py' 2026-03-01T17:45:55,593 adding 'xmipp3/protocols/protocol_movie_dose_analysis.py' 2026-03-01T17:45:55,596 adding 'xmipp3/protocols/protocol_movie_gain.py' 2026-03-01T17:45:55,599 adding 'xmipp3/protocols/protocol_movie_max_shift.py' 2026-03-01T17:45:55,601 adding 'xmipp3/protocols/protocol_movie_split_frames.py' 2026-03-01T17:45:55,603 adding 'xmipp3/protocols/protocol_multiple_fscs.py' 2026-03-01T17:45:55,606 adding 'xmipp3/protocols/protocol_multireference_alignability.py' 2026-03-01T17:45:55,608 adding 'xmipp3/protocols/protocol_normalize_strain.py' 2026-03-01T17:45:55,609 adding 'xmipp3/protocols/protocol_particle_pick.py' 2026-03-01T17:45:55,611 adding 'xmipp3/protocols/protocol_particle_pick_automatic.py' 2026-03-01T17:45:55,614 adding 'xmipp3/protocols/protocol_particle_pick_consensus.py' 2026-03-01T17:45:55,616 adding 'xmipp3/protocols/protocol_particle_pick_pairs.py' 2026-03-01T17:45:55,617 adding 'xmipp3/protocols/protocol_particle_pick_remove_duplicates.py' 2026-03-01T17:45:55,619 adding 'xmipp3/protocols/protocol_phantom_create.py' 2026-03-01T17:45:55,620 adding 'xmipp3/protocols/protocol_pick_noise.py' 2026-03-01T17:45:55,622 adding 'xmipp3/protocols/protocol_postProcessing_deepPostProcessing.py' 2026-03-01T17:45:55,625 adding 'xmipp3/protocols/protocol_preprocess_micrographs.py' 2026-03-01T17:45:55,628 adding 'xmipp3/protocols/protocol_random_conical_tilt.py' 2026-03-01T17:45:55,631 adding 'xmipp3/protocols/protocol_ransac.py' 2026-03-01T17:45:55,634 adding 'xmipp3/protocols/protocol_reconstruct_fourier.py' 2026-03-01T17:45:55,643 adding 'xmipp3/protocols/protocol_reconstruct_highres.py' 2026-03-01T17:45:55,647 adding 'xmipp3/protocols/protocol_reconstruct_significant.py' 2026-03-01T17:45:55,650 adding 'xmipp3/protocols/protocol_reconstruct_swarm.py' 2026-03-01T17:45:55,652 adding 'xmipp3/protocols/protocol_resolution3d.py' 2026-03-01T17:45:55,654 adding 'xmipp3/protocols/protocol_resolution_bfactor.py' 2026-03-01T17:45:55,656 adding 'xmipp3/protocols/protocol_resolution_deepres.py' 2026-03-01T17:45:55,658 adding 'xmipp3/protocols/protocol_resolution_directional.py' 2026-03-01T17:45:55,660 adding 'xmipp3/protocols/protocol_resolution_fso.py' 2026-03-01T17:45:55,663 adding 'xmipp3/protocols/protocol_resolution_monogenic_signal.py' 2026-03-01T17:45:55,664 adding 'xmipp3/protocols/protocol_rotate_volume.py' 2026-03-01T17:45:55,666 adding 'xmipp3/protocols/protocol_rotational_symmetry.py' 2026-03-01T17:45:55,676 adding 'xmipp3/protocols/protocol_screen_deepConsensus.py' 2026-03-01T17:45:55,679 adding 'xmipp3/protocols/protocol_screen_particles.py' 2026-03-01T17:45:55,681 adding 'xmipp3/protocols/protocol_shift_particles.py' 2026-03-01T17:45:55,682 adding 'xmipp3/protocols/protocol_shift_volume.py' 2026-03-01T17:45:55,684 adding 'xmipp3/protocols/protocol_simulate_ctf.py' 2026-03-01T17:45:55,686 adding 'xmipp3/protocols/protocol_structure_map.py' 2026-03-01T17:45:55,688 adding 'xmipp3/protocols/protocol_structure_map_zernike3d.py' 2026-03-01T17:45:55,690 adding 'xmipp3/protocols/protocol_subtract_projection.py' 2026-03-01T17:45:55,693 adding 'xmipp3/protocols/protocol_tilt_analysis.py' 2026-03-01T17:45:55,696 adding 'xmipp3/protocols/protocol_trigger_data.py' 2026-03-01T17:45:55,699 adding 'xmipp3/protocols/protocol_validate_fscq.py' 2026-03-01T17:45:55,701 adding 'xmipp3/protocols/protocol_validate_nontilt.py' 2026-03-01T17:45:55,704 adding 'xmipp3/protocols/protocol_validate_overfitting.py' 2026-03-01T17:45:55,706 adding 'xmipp3/protocols/protocol_volume_adjust_sub.py' 2026-03-01T17:45:55,708 adding 'xmipp3/protocols/protocol_volume_consensus.py' 2026-03-01T17:45:55,709 adding 'xmipp3/protocols/protocol_volume_deform_zernike3d.py' 2026-03-01T17:45:55,711 adding 'xmipp3/protocols/protocol_volume_local_adjust.py' 2026-03-01T17:45:55,713 adding 'xmipp3/protocols/protocol_volume_local_sharpening.py' 2026-03-01T17:45:55,715 adding 'xmipp3/protocols/protocol_volume_strain.py' 2026-03-01T17:45:55,716 adding 'xmipp3/protocols/protocol_write_testC.py' 2026-03-01T17:45:55,717 adding 'xmipp3/protocols/protocol_write_testP.py' 2026-03-01T17:45:55,719 adding 'xmipp3/protocols/protocol_preprocess/__init__.py' 2026-03-01T17:45:55,721 adding 'xmipp3/protocols/protocol_preprocess/geometrical_mask.py' 2026-03-01T17:45:55,723 adding 'xmipp3/protocols/protocol_preprocess/protocol_add_noise.py' 2026-03-01T17:45:55,725 adding 'xmipp3/protocols/protocol_preprocess/protocol_create_mask2d.py' 2026-03-01T17:45:55,727 adding 'xmipp3/protocols/protocol_preprocess/protocol_create_mask3d.py' 2026-03-01T17:45:55,730 adding 'xmipp3/protocols/protocol_preprocess/protocol_crop_resize.py' 2026-03-01T17:45:55,733 adding 'xmipp3/protocols/protocol_preprocess/protocol_filter.py' 2026-03-01T17:45:55,735 adding 'xmipp3/protocols/protocol_preprocess/protocol_image_operate.py' 2026-03-01T17:45:55,737 adding 'xmipp3/protocols/protocol_preprocess/protocol_mask.py' 2026-03-01T17:45:55,739 adding 'xmipp3/protocols/protocol_preprocess/protocol_movie_resize.py' 2026-03-01T17:45:55,743 adding 'xmipp3/protocols/protocol_preprocess/protocol_preprocess.py' 2026-03-01T17:45:55,745 adding 'xmipp3/protocols/protocol_preprocess/protocol_process.py' 2026-03-01T17:45:55,747 adding 'xmipp3/protocols/protocol_projmatch/__init__.py' 2026-03-01T17:45:55,750 adding 'xmipp3/protocols/protocol_projmatch/projmatch_form.py' 2026-03-01T17:45:55,752 adding 'xmipp3/protocols/protocol_projmatch/projmatch_initialize.py' 2026-03-01T17:45:55,756 adding 'xmipp3/protocols/protocol_projmatch/projmatch_steps.py' 2026-03-01T17:45:55,759 adding 'xmipp3/protocols/protocol_projmatch/protocol_projmatch.py' 2026-03-01T17:45:55,761 adding 'xmipp3/tests/__init__.py' 2026-03-01T17:45:55,765 adding 'xmipp3/tests/test_convert_xmipp.py' 2026-03-01T17:45:55,767 adding 'xmipp3/tests/test_protocol_angular_graph_consistency.py' 2026-03-01T17:45:55,768 adding 'xmipp3/tests/test_protocol_apply_transformation_matrix.py' 2026-03-01T17:45:55,770 adding 'xmipp3/tests/test_protocol_compare_angles.py' 2026-03-01T17:45:55,772 adding 'xmipp3/tests/test_protocol_consensus_classes3D.py' 2026-03-01T17:45:55,773 adding 'xmipp3/tests/test_protocol_ctf_consensus.py' 2026-03-01T17:45:55,776 adding 'xmipp3/tests/test_protocol_extract_asymmetric_unit.py' 2026-03-01T17:45:55,778 adding 'xmipp3/tests/test_protocol_likelihood.py' 2026-03-01T17:45:55,779 adding 'xmipp3/tests/test_protocol_monodir.py' 2026-03-01T17:45:55,781 adding 'xmipp3/tests/test_protocol_multiple_fsc.py' 2026-03-01T17:45:55,782 adding 'xmipp3/tests/test_protocol_multireference_alignability.py' 2026-03-01T17:45:55,784 adding 'xmipp3/tests/test_protocol_reconstruct_fourier.py' 2026-03-01T17:45:55,785 adding 'xmipp3/tests/test_protocol_screen_deepConsensus.py' 2026-03-01T17:45:55,787 adding 'xmipp3/tests/test_protocol_simulate_ctf.py' 2026-03-01T17:45:55,788 adding 'xmipp3/tests/test_protocol_split_frames.py' 2026-03-01T17:45:55,789 adding 'xmipp3/tests/test_protocol_validate_fscq.py' 2026-03-01T17:45:55,791 adding 'xmipp3/tests/test_protocol_validate_overfitting.py' 2026-03-01T17:45:55,792 adding 'xmipp3/tests/test_protocols_add_noise.py' 2026-03-01T17:45:55,793 adding 'xmipp3/tests/test_protocols_continuousflex.py' 2026-03-01T17:45:55,795 adding 'xmipp3/tests/test_protocols_deepVolPostprocessing.py' 2026-03-01T17:45:55,796 adding 'xmipp3/tests/test_protocols_deepcenter_predict.py' 2026-03-01T17:45:55,797 adding 'xmipp3/tests/test_protocols_deepres.py' 2026-03-01T17:45:55,799 adding 'xmipp3/tests/test_protocols_fso.py' 2026-03-01T17:45:55,800 adding 'xmipp3/tests/test_protocols_highres.py' 2026-03-01T17:45:55,802 adding 'xmipp3/tests/test_protocols_local_defocus.py' 2026-03-01T17:45:55,803 adding 'xmipp3/tests/test_protocols_localdeblur.py' 2026-03-01T17:45:55,805 adding 'xmipp3/tests/test_protocols_monores.py' 2026-03-01T17:45:55,806 adding 'xmipp3/tests/test_protocols_realignment_classes.py' 2026-03-01T17:45:55,813 adding 'xmipp3/tests/test_protocols_xmipp_2d.py' 2026-03-01T17:45:55,822 adding 'xmipp3/tests/test_protocols_xmipp_3d.py' 2026-03-01T17:45:55,827 adding 'xmipp3/tests/test_protocols_xmipp_mics.py' 2026-03-01T17:45:55,829 adding 'xmipp3/tests/test_protocols_xmipp_movie_resize.py' 2026-03-01T17:45:55,832 adding 'xmipp3/tests/test_protocols_xmipp_movies.py' 2026-03-01T17:45:55,834 adding 'xmipp3/tests/test_protocols_zernike3d.py' 2026-03-01T17:45:55,836 adding 'xmipp3/viewers/__init__.py' 2026-03-01T17:45:55,838 adding 'xmipp3/viewers/plotter.py' 2026-03-01T17:45:55,840 adding 'xmipp3/viewers/viewer.py' 2026-03-01T17:45:55,842 adding 'xmipp3/viewers/viewer_LL_matrix.py' 2026-03-01T17:45:55,843 adding 'xmipp3/viewers/viewer_analyze_local_ctf.py' 2026-03-01T17:45:55,845 adding 'xmipp3/viewers/viewer_apply_tilt_to_ctf.py' 2026-03-01T17:45:55,846 adding 'xmipp3/viewers/viewer_cl2d.py' 2026-03-01T17:45:55,848 adding 'xmipp3/viewers/viewer_cl2d_clustering.py' 2026-03-01T17:45:55,849 adding 'xmipp3/viewers/viewer_consensus_classes.py' 2026-03-01T17:45:55,851 adding 'xmipp3/viewers/viewer_ctf_consensus.py' 2026-03-01T17:45:55,853 adding 'xmipp3/viewers/viewer_deepEMHancer.py' 2026-03-01T17:45:55,854 adding 'xmipp3/viewers/viewer_deep_consensus.py' 2026-03-01T17:45:55,856 adding 'xmipp3/viewers/viewer_deep_micrograph_cleaner.py' 2026-03-01T17:45:55,857 adding 'xmipp3/viewers/viewer_dose_analysis.py' 2026-03-01T17:45:55,859 adding 'xmipp3/viewers/viewer_eliminate_empty_images.py' 2026-03-01T17:45:55,861 adding 'xmipp3/viewers/viewer_extract_asymmetric_unit.py' 2026-03-01T17:45:55,862 adding 'xmipp3/viewers/viewer_local_sharpening.py' 2026-03-01T17:45:55,864 adding 'xmipp3/viewers/viewer_ml2d.py' 2026-03-01T17:45:55,865 adding 'xmipp3/viewers/viewer_movie_alignment.py' 2026-03-01T17:45:55,867 adding 'xmipp3/viewers/viewer_normalize_strain.py' 2026-03-01T17:45:55,868 adding 'xmipp3/viewers/viewer_pdb_deform_zernike3d.py' 2026-03-01T17:45:55,872 adding 'xmipp3/viewers/viewer_projmatch.py' 2026-03-01T17:45:55,873 adding 'xmipp3/viewers/viewer_ransac.py' 2026-03-01T17:45:55,875 adding 'xmipp3/viewers/viewer_reconstruct_highres.py' 2026-03-01T17:45:55,878 adding 'xmipp3/viewers/viewer_resolution3d.py' 2026-03-01T17:45:55,879 adding 'xmipp3/viewers/viewer_resolution_bfactor.py' 2026-03-01T17:45:55,881 adding 'xmipp3/viewers/viewer_resolution_deepres.py' 2026-03-01T17:45:55,884 adding 'xmipp3/viewers/viewer_resolution_directional.py' 2026-03-01T17:45:55,886 adding 'xmipp3/viewers/viewer_resolution_fso.py' 2026-03-01T17:45:55,888 adding 'xmipp3/viewers/viewer_resolution_monogenic_signal.py' 2026-03-01T17:45:55,891 adding 'xmipp3/viewers/viewer_structure_map.py' 2026-03-01T17:45:55,893 adding 'xmipp3/viewers/viewer_subtract_projection.py' 2026-03-01T17:45:55,894 adding 'xmipp3/viewers/viewer_swarm.py' 2026-03-01T17:45:55,896 adding 'xmipp3/viewers/viewer_validate_fscq.py' 2026-03-01T17:45:55,897 adding 'xmipp3/viewers/viewer_validate_nontilt.py' 2026-03-01T17:45:55,899 adding 'xmipp3/viewers/viewer_validate_overfitting.py' 2026-03-01T17:45:55,900 adding 'xmipp3/viewers/viewer_volume_consensus.py' 2026-03-01T17:45:55,901 adding 'xmipp3/viewers/viewer_volume_deform_zernike3d.py' 2026-03-01T17:45:55,903 adding 'xmipp3/viewers/viewer_volume_strain.py' 2026-03-01T17:45:55,904 adding 'xmipp3/viewers/viewer_volume_subtraction.py' 2026-03-01T17:45:55,905 adding 'scipion_em_xmipp-28.0.0.dist-info/METADATA' 2026-03-01T17:45:55,906 adding 'scipion_em_xmipp-28.0.0.dist-info/WHEEL' 2026-03-01T17:45:55,907 adding 'scipion_em_xmipp-28.0.0.dist-info/entry_points.txt' 2026-03-01T17:45:55,908 adding 'scipion_em_xmipp-28.0.0.dist-info/top_level.txt' 2026-03-01T17:45:55,912 adding 'scipion_em_xmipp-28.0.0.dist-info/RECORD' 2026-03-01T17:45:55,934 removing build/bdist.linux-armv7l/wheel 2026-03-01T17:45:56,084 Building wheel for scipion-em-xmipp (pyproject.toml): finished with status 'done' 2026-03-01T17:45:56,123 Created wheel for scipion-em-xmipp: filename=scipion_em_xmipp-28.0.0-py3-none-any.whl size=1804967 sha256=182b23cf0a11610ddc557cd407c635452a45ab201200e4f1ee4a08fdc1cdc7e0 2026-03-01T17:45:56,124 Stored in directory: /tmp/pip-ephem-wheel-cache-584ahdhv/wheels/3c/a8/c1/789c652a8caf5035d6811a1a7b40868770441a10607d217edd 2026-03-01T17:45:56,144 Successfully built scipion-em-xmipp 2026-03-01T17:45:56,188 Removed build tracker: '/tmp/pip-build-tracker-33dgi9wd'