2026-03-01T18:01:55,672 Created temporary directory: /tmp/pip-ephem-wheel-cache-ckb30fw1 2026-03-01T18:01:55,674 Created temporary directory: /tmp/pip-build-tracker-zlk0h134 2026-03-01T18:01:55,674 Initialized build tracking at /tmp/pip-build-tracker-zlk0h134 2026-03-01T18:01:55,675 Created build tracker: /tmp/pip-build-tracker-zlk0h134 2026-03-01T18:01:55,675 Entered build tracker: /tmp/pip-build-tracker-zlk0h134 2026-03-01T18:01:55,676 Created temporary directory: /tmp/pip-wheel-04ekf_wl 2026-03-01T18:01:55,679 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-01T18:01:55,681 Created temporary directory: /tmp/pip-ephem-wheel-cache-34elyhoi 2026-03-01T18:01:55,703 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-01T18:01:55,707 2 location(s) to search for versions of scipion-em-xmipp: 2026-03-01T18:01:55,707 * https://pypi.org/simple/scipion-em-xmipp/ 2026-03-01T18:01:55,707 * https://www.piwheels.org/simple/scipion-em-xmipp/ 2026-03-01T18:01:55,708 Fetching project page and analyzing links: https://pypi.org/simple/scipion-em-xmipp/ 2026-03-01T18:01:55,709 Getting page https://pypi.org/simple/scipion-em-xmipp/ 2026-03-01T18:01:55,710 Found index url https://pypi.org/simple 2026-03-01T18:01:55,939 Fetched page https://pypi.org/simple/scipion-em-xmipp/ as application/vnd.pypi.simple.v1+json 2026-03-01T18:01:55,955 Found link 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https://files.pythonhosted.org/packages/7d/5d/c9de1cb42db2cef7b4301f748b1fa3eea7895a0d678af03f4824b15b0e5a/scipion_em_xmipp-26.0.2.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8), version: 26.0.2 2026-03-01T18:01:56,011 Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/a2/3c/37c20eb89b65e3203c1826aef488171041fe90bfccf121bfff036a682fc9/scipion_em_xmipp-26.1.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8) 2026-03-01T18:01:56,012 Found link https://files.pythonhosted.org/packages/1d/c0/922d6d59b584994412f93af6f2ec1fddd92e64735e77f0b73fc93d8d1704/scipion_em_xmipp-26.1.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8), version: 26.1.0 2026-03-01T18:01:56,013 Skipping link: No binaries permitted for scipion-em-xmipp: 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https://files.pythonhosted.org/packages/b9/e7/36c4950f234c674a092550615106cf17373d639c103c609bfc8a786f18e0/scipion_em_xmipp-28.0.1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8), version: 28.0.1 2026-03-01T18:01:56,019 Fetching project page and analyzing links: https://www.piwheels.org/simple/scipion-em-xmipp/ 2026-03-01T18:01:56,020 Getting page https://www.piwheels.org/simple/scipion-em-xmipp/ 2026-03-01T18:01:56,021 Found index url https://www.piwheels.org/simple 2026-03-01T18:01:56,244 Fetched page https://www.piwheels.org/simple/scipion-em-xmipp/ as text/html 2026-03-01T18:01:56,253 Skipping link: No binaries permitted for scipion-em-xmipp: https://www.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-28.0.0-py3-none-any.whl#sha256=182b23cf0a11610ddc557cd407c635452a45ab201200e4f1ee4a08fdc1cdc7e0 (from https://www.piwheels.org/simple/scipion-em-xmipp/) (requires-python:>=3.8) 2026-03-01T18:01:56,253 Skipping link: No binaries permitted for 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https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b2-py3-none-any.whl#sha256=dc34830c4791cef76913516e175f6c69d921dd26db0b2c11395e64bcfff4354e (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-03-01T18:01:56,263 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b0-py3-none-any.whl#sha256=c74c0e54143586e25d9c1934b2d61f28330897547f50360edf68725306cd0d48 (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-03-01T18:01:56,264 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.2b0-py3-none-any.whl#sha256=a3c81606d051b477612e1eeed371682fdb4d1fa86aa41c28ff73dc8f44003e14 (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-03-01T18:01:56,264 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.1b0-py3-none-any.whl#sha256=5477ba6a7bdacacbd72882e68d7eaceb2a24f32ab32007d2fe70bdab95a2df63 (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-03-01T18:01:56,265 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3b0-py3-none-any.whl#sha256=e484efa82b28bf099ece04ecdc9a642dafd23ffc44ae414d77989f9c576bb96a (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-03-01T18:01:56,265 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-1.0.0b1-py3-none-any.whl#sha256=6d36929f4411ac1ff69548230bf74d77c4cc75e68aead196203186fb26094e49 (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-03-01T18:01:56,266 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-1.0.0a1-py3-none-any.whl#sha256=c088df2fbccef99c06f812beb1584e487375276c582430f35a8a78620ea3a41f (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-03-01T18:01:56,267 Skipping link: not a file: https://www.piwheels.org/simple/scipion-em-xmipp/ 2026-03-01T18:01:56,267 Skipping link: not a file: https://pypi.org/simple/scipion-em-xmipp/ 2026-03-01T18:01:56,293 Given no hashes to check 1 links for project 'scipion-em-xmipp': discarding no candidates 2026-03-01T18:01:56,313 Collecting scipion-em-xmipp==28.0.1 2026-03-01T18:01:56,315 Created temporary directory: /tmp/pip-unpack-h1a2cnjn 2026-03-01T18:01:56,463 Downloading scipion_em_xmipp-28.0.1.tar.gz (1.5 MB) 2026-03-01T18:01:57,393 Added scipion-em-xmipp==28.0.1 from https://files.pythonhosted.org/packages/b9/e7/36c4950f234c674a092550615106cf17373d639c103c609bfc8a786f18e0/scipion_em_xmipp-28.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-zlk0h134' 2026-03-01T18:01:57,398 Created temporary directory: /tmp/pip-build-env-bqoph0dx 2026-03-01T18:01:57,402 Installing build dependencies: started 2026-03-01T18:01:57,403 Running command pip subprocess to install build dependencies 2026-03-01T18:01:58,569 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-03-01T18:01:59,139 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-01T18:01:59,162 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-01T18:02:00,883 Collecting setuptools 2026-03-01T18:02:00,980 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.0-py3-none-any.whl (1.0 MB) 2026-03-01T18:02:03,989 Installing collected packages: setuptools 2026-03-01T18:02:07,107 Successfully installed setuptools-82.0.0 2026-03-01T18:02:07,374 Installing build dependencies: finished with status 'done' 2026-03-01T18:02:07,381 Getting requirements to build wheel: started 2026-03-01T18:02:07,382 Running command Getting requirements to build wheel 2026-03-01T18:02:07,994 No `packages` or `py_modules` configuration, performing automatic discovery. 2026-03-01T18:02:07,995 `flat-layout` detected -- analysing . 2026-03-01T18:02:08,018 discovered packages -- ['xmipp3', 'xmipp3.convert', 'xmipp3.tests', 'xmipp3.viewers', 'xmipp3.legacy', 'xmipp3.protocols', 'xmipp3.legacy.tests', 'xmipp3.legacy.viewers', 'xmipp3.legacy.protocols', 'xmipp3.protocols.protocol_projmatch', 'xmipp3.protocols.protocol_preprocess'] 2026-03-01T18:02:08,023 /tmp/pip-build-env-bqoph0dx/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-01T18:02:08,023 !! 2026-03-01T18:02:08,025 ******************************************************************************** 2026-03-01T18:02:08,025 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-01T18:02:08,026 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-01T18:02:08,027 or your builds will no longer be supported. 2026-03-01T18:02:08,028 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-01T18:02:08,028 ******************************************************************************** 2026-03-01T18:02:08,030 !! 2026-03-01T18:02:08,030 corresp(dist, value, root_dir) 2026-03-01T18:02:08,109 running egg_info 2026-03-01T18:02:08,115 writing scipion_em_xmipp.egg-info/PKG-INFO 2026-03-01T18:02:08,118 writing dependency_links to scipion_em_xmipp.egg-info/dependency_links.txt 2026-03-01T18:02:08,120 writing entry points to scipion_em_xmipp.egg-info/entry_points.txt 2026-03-01T18:02:08,122 writing requirements to scipion_em_xmipp.egg-info/requires.txt 2026-03-01T18:02:08,123 writing top-level names to scipion_em_xmipp.egg-info/top_level.txt 2026-03-01T18:02:08,162 reading manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt' 2026-03-01T18:02:08,177 reading manifest template 'MANIFEST.in' 2026-03-01T18:02:08,179 adding license file 'LICENSE' 2026-03-01T18:02:08,193 writing manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt' 2026-03-01T18:02:08,291 Getting requirements to build wheel: finished with status 'done' 2026-03-01T18:02:08,294 Created temporary directory: /tmp/pip-modern-metadata-7i62z8yq 2026-03-01T18:02:08,297 Preparing metadata (pyproject.toml): started 2026-03-01T18:02:08,298 Running command Preparing metadata (pyproject.toml) 2026-03-01T18:02:08,857 No `packages` or `py_modules` configuration, performing automatic discovery. 2026-03-01T18:02:08,857 `flat-layout` detected -- analysing . 2026-03-01T18:02:08,876 discovered packages -- ['xmipp3', 'xmipp3.convert', 'xmipp3.tests', 'xmipp3.viewers', 'xmipp3.legacy', 'xmipp3.protocols', 'xmipp3.legacy.tests', 'xmipp3.legacy.viewers', 'xmipp3.legacy.protocols', 'xmipp3.protocols.protocol_projmatch', 'xmipp3.protocols.protocol_preprocess'] 2026-03-01T18:02:08,880 /tmp/pip-build-env-bqoph0dx/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-01T18:02:08,881 !! 2026-03-01T18:02:08,882 ******************************************************************************** 2026-03-01T18:02:08,882 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-01T18:02:08,883 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-01T18:02:08,884 or your builds will no longer be supported. 2026-03-01T18:02:08,885 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-01T18:02:08,885 ******************************************************************************** 2026-03-01T18:02:08,886 !! 2026-03-01T18:02:08,887 corresp(dist, value, root_dir) 2026-03-01T18:02:08,965 running dist_info 2026-03-01T18:02:08,976 creating /tmp/pip-modern-metadata-7i62z8yq/scipion_em_xmipp.egg-info 2026-03-01T18:02:08,977 writing /tmp/pip-modern-metadata-7i62z8yq/scipion_em_xmipp.egg-info/PKG-INFO 2026-03-01T18:02:08,980 writing dependency_links to /tmp/pip-modern-metadata-7i62z8yq/scipion_em_xmipp.egg-info/dependency_links.txt 2026-03-01T18:02:08,982 writing entry points to /tmp/pip-modern-metadata-7i62z8yq/scipion_em_xmipp.egg-info/entry_points.txt 2026-03-01T18:02:08,984 writing requirements to /tmp/pip-modern-metadata-7i62z8yq/scipion_em_xmipp.egg-info/requires.txt 2026-03-01T18:02:08,985 writing top-level names to /tmp/pip-modern-metadata-7i62z8yq/scipion_em_xmipp.egg-info/top_level.txt 2026-03-01T18:02:08,986 writing manifest file '/tmp/pip-modern-metadata-7i62z8yq/scipion_em_xmipp.egg-info/SOURCES.txt' 2026-03-01T18:02:09,022 reading manifest file '/tmp/pip-modern-metadata-7i62z8yq/scipion_em_xmipp.egg-info/SOURCES.txt' 2026-03-01T18:02:09,024 reading manifest template 'MANIFEST.in' 2026-03-01T18:02:09,026 adding license file 'LICENSE' 2026-03-01T18:02:09,037 writing manifest file '/tmp/pip-modern-metadata-7i62z8yq/scipion_em_xmipp.egg-info/SOURCES.txt' 2026-03-01T18:02:09,038 creating '/tmp/pip-modern-metadata-7i62z8yq/scipion_em_xmipp-28.0.1.dist-info' 2026-03-01T18:02:09,165 Preparing metadata (pyproject.toml): finished with status 'done' 2026-03-01T18:02:09,170 Source in /tmp/pip-wheel-04ekf_wl/scipion-em-xmipp_ca9d51a2328347879224a9244a38df82 has version 28.0.1, which satisfies requirement scipion-em-xmipp==28.0.1 from https://files.pythonhosted.org/packages/b9/e7/36c4950f234c674a092550615106cf17373d639c103c609bfc8a786f18e0/scipion_em_xmipp-28.0.1.tar.gz 2026-03-01T18:02:09,171 Removed scipion-em-xmipp==28.0.1 from https://files.pythonhosted.org/packages/b9/e7/36c4950f234c674a092550615106cf17373d639c103c609bfc8a786f18e0/scipion_em_xmipp-28.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-zlk0h134' 2026-03-01T18:02:09,176 Created temporary directory: /tmp/pip-unpack-a8dt7lic 2026-03-01T18:02:09,177 Building wheels for collected packages: scipion-em-xmipp 2026-03-01T18:02:09,181 Created temporary directory: /tmp/pip-wheel-34igqts5 2026-03-01T18:02:09,182 Destination directory: /tmp/pip-wheel-34igqts5 2026-03-01T18:02:09,184 Building wheel for scipion-em-xmipp (pyproject.toml): started 2026-03-01T18:02:09,185 Running command Building wheel for scipion-em-xmipp (pyproject.toml) 2026-03-01T18:02:09,735 No `packages` or `py_modules` configuration, performing automatic discovery. 2026-03-01T18:02:09,735 `flat-layout` detected -- analysing . 2026-03-01T18:02:09,753 discovered packages -- ['xmipp3', 'xmipp3.convert', 'xmipp3.tests', 'xmipp3.viewers', 'xmipp3.legacy', 'xmipp3.protocols', 'xmipp3.legacy.tests', 'xmipp3.legacy.viewers', 'xmipp3.legacy.protocols', 'xmipp3.protocols.protocol_projmatch', 'xmipp3.protocols.protocol_preprocess'] 2026-03-01T18:02:09,758 /tmp/pip-build-env-bqoph0dx/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-01T18:02:09,758 !! 2026-03-01T18:02:09,759 ******************************************************************************** 2026-03-01T18:02:09,760 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-01T18:02:09,761 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-01T18:02:09,761 or your builds will no longer be supported. 2026-03-01T18:02:09,763 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-01T18:02:09,763 ******************************************************************************** 2026-03-01T18:02:09,764 !! 2026-03-01T18:02:09,765 corresp(dist, value, root_dir) 2026-03-01T18:02:09,832 running bdist_wheel 2026-03-01T18:02:09,849 running build 2026-03-01T18:02:09,850 running build_py 2026-03-01T18:02:09,856 creating build/lib/xmipp3 2026-03-01T18:02:09,858 copying xmipp3/utils.py -> build/lib/xmipp3 2026-03-01T18:02:09,861 copying xmipp3/protocolsCollectInfo.py -> build/lib/xmipp3 2026-03-01T18:02:09,863 copying xmipp3/bibtex.py -> build/lib/xmipp3 2026-03-01T18:02:09,865 copying xmipp3/base.py -> build/lib/xmipp3 2026-03-01T18:02:09,868 copying xmipp3/wizards.py -> build/lib/xmipp3 2026-03-01T18:02:09,871 copying xmipp3/__init__.py -> build/lib/xmipp3 2026-03-01T18:02:09,873 copying xmipp3/constants.py -> build/lib/xmipp3 2026-03-01T18:02:09,875 copying xmipp3/version.py -> build/lib/xmipp3 2026-03-01T18:02:09,877 copying xmipp3/logParser.py -> build/lib/xmipp3 2026-03-01T18:02:09,879 copying xmipp3/programs.py -> build/lib/xmipp3 2026-03-01T18:02:09,881 copying xmipp3/checkProtocolsConf.py -> build/lib/xmipp3 2026-03-01T18:02:09,884 creating build/lib/xmipp3/convert 2026-03-01T18:02:09,885 copying xmipp3/convert/dataimport.py -> build/lib/xmipp3/convert 2026-03-01T18:02:09,887 copying xmipp3/convert/convert.py -> build/lib/xmipp3/convert 2026-03-01T18:02:09,891 copying xmipp3/convert/__init__.py -> build/lib/xmipp3/convert 2026-03-01T18:02:09,893 copying xmipp3/convert/io_coordinates.py -> build/lib/xmipp3/convert 2026-03-01T18:02:09,896 creating build/lib/xmipp3/tests 2026-03-01T18:02:09,897 copying xmipp3/tests/test_protocols_fso.py -> build/lib/xmipp3/tests 2026-03-01T18:02:09,899 copying xmipp3/tests/test_protocols_xmipp_movie_resize.py -> build/lib/xmipp3/tests 2026-03-01T18:02:09,901 copying xmipp3/tests/test_protocols_xmipp_2d.py -> build/lib/xmipp3/tests 2026-03-01T18:02:09,905 copying xmipp3/tests/test_protocol_angular_graph_consistency.py -> build/lib/xmipp3/tests 2026-03-01T18:02:09,907 copying xmipp3/tests/test_protocols_local_defocus.py -> build/lib/xmipp3/tests 2026-03-01T18:02:09,909 copying xmipp3/tests/test_protocols_zernike3d.py -> build/lib/xmipp3/tests 2026-03-01T18:02:09,912 copying xmipp3/tests/test_protocols_monores.py -> build/lib/xmipp3/tests 2026-03-01T18:02:09,914 copying xmipp3/tests/test_protocol_multiple_fsc.py -> build/lib/xmipp3/tests 2026-03-01T18:02:09,916 copying xmipp3/tests/test_protocol_consensus_classes3D.py -> build/lib/xmipp3/tests 2026-03-01T18:02:09,918 copying xmipp3/tests/test_protocols_realignment_classes.py -> build/lib/xmipp3/tests 2026-03-01T18:02:09,920 copying xmipp3/tests/test_protocols_xmipp_3d.py -> build/lib/xmipp3/tests 2026-03-01T18:02:09,924 copying xmipp3/tests/test_protocol_ctf_consensus.py -> build/lib/xmipp3/tests 2026-03-01T18:02:09,926 copying xmipp3/tests/test_protocol_extract_asymmetric_unit.py -> build/lib/xmipp3/tests 2026-03-01T18:02:09,929 copying xmipp3/tests/test_protocols_deepres.py -> build/lib/xmipp3/tests 2026-03-01T18:02:09,930 copying xmipp3/tests/test_protocols_continuousflex.py -> build/lib/xmipp3/tests 2026-03-01T18:02:09,933 copying xmipp3/tests/test_protocol_likelihood.py -> build/lib/xmipp3/tests 2026-03-01T18:02:09,935 copying xmipp3/tests/test_protocols_localdeblur.py -> build/lib/xmipp3/tests 2026-03-01T18:02:09,937 copying xmipp3/tests/test_protocol_validate_fscq.py -> build/lib/xmipp3/tests 2026-03-01T18:02:09,939 copying xmipp3/tests/test_protocol_split_frames.py -> build/lib/xmipp3/tests 2026-03-01T18:02:09,941 copying xmipp3/tests/test_protocols_xmipp_movies.py -> build/lib/xmipp3/tests 2026-03-01T18:02:09,944 copying xmipp3/tests/test_protocols_add_noise.py -> build/lib/xmipp3/tests 2026-03-01T18:02:09,947 copying xmipp3/tests/test_protocol_compare_angles.py -> build/lib/xmipp3/tests 2026-03-01T18:02:09,949 copying xmipp3/tests/__init__.py -> build/lib/xmipp3/tests 2026-03-01T18:02:09,951 copying xmipp3/tests/test_protocols_deepVolPostprocessing.py -> build/lib/xmipp3/tests 2026-03-01T18:02:09,953 copying xmipp3/tests/test_protocol_apply_transformation_matrix.py -> build/lib/xmipp3/tests 2026-03-01T18:02:09,955 copying xmipp3/tests/test_protocols_deepcenter_predict.py -> build/lib/xmipp3/tests 2026-03-01T18:02:09,957 copying xmipp3/tests/test_protocol_screen_deepConsensus.py -> build/lib/xmipp3/tests 2026-03-01T18:02:09,959 copying xmipp3/tests/test_convert_xmipp.py -> build/lib/xmipp3/tests 2026-03-01T18:02:09,962 copying xmipp3/tests/test_protocol_monodir.py -> build/lib/xmipp3/tests 2026-03-01T18:02:09,964 copying xmipp3/tests/test_protocol_reconstruct_fourier.py -> build/lib/xmipp3/tests 2026-03-01T18:02:09,966 copying xmipp3/tests/test_protocol_validate_overfitting.py -> build/lib/xmipp3/tests 2026-03-01T18:02:09,968 copying xmipp3/tests/test_protocols_highres.py -> build/lib/xmipp3/tests 2026-03-01T18:02:09,970 copying xmipp3/tests/test_protocol_multireference_alignability.py -> build/lib/xmipp3/tests 2026-03-01T18:02:09,973 copying xmipp3/tests/test_protocol_simulate_ctf.py -> build/lib/xmipp3/tests 2026-03-01T18:02:09,975 copying xmipp3/tests/test_protocols_xmipp_mics.py -> build/lib/xmipp3/tests 2026-03-01T18:02:09,979 creating build/lib/xmipp3/viewers 2026-03-01T18:02:09,980 copying xmipp3/viewers/viewer_volume_deform_zernike3d.py -> build/lib/xmipp3/viewers 2026-03-01T18:02:09,983 copying xmipp3/viewers/viewer_deepEMHancer.py -> build/lib/xmipp3/viewers 2026-03-01T18:02:09,985 copying xmipp3/viewers/viewer_apply_tilt_to_ctf.py -> build/lib/xmipp3/viewers 2026-03-01T18:02:09,987 copying xmipp3/viewers/viewer_volume_subtraction.py -> build/lib/xmipp3/viewers 2026-03-01T18:02:09,989 copying xmipp3/viewers/viewer_pdb_deform_zernike3d.py -> build/lib/xmipp3/viewers 2026-03-01T18:02:09,992 copying xmipp3/viewers/viewer_normalize_strain.py -> build/lib/xmipp3/viewers 2026-03-01T18:02:09,993 copying xmipp3/viewers/viewer_movie_alignment.py -> build/lib/xmipp3/viewers 2026-03-01T18:02:09,996 copying xmipp3/viewers/viewer_subtract_projection.py -> build/lib/xmipp3/viewers 2026-03-01T18:02:09,998 copying xmipp3/viewers/viewer_consensus_classes.py -> build/lib/xmipp3/viewers 2026-03-01T18:02:10,000 copying xmipp3/viewers/viewer_cl2d_clustering.py -> build/lib/xmipp3/viewers 2026-03-01T18:02:10,002 copying xmipp3/viewers/viewer_ctf_consensus.py -> build/lib/xmipp3/viewers 2026-03-01T18:02:10,004 copying xmipp3/viewers/viewer_ml2d.py -> build/lib/xmipp3/viewers 2026-03-01T18:02:10,007 copying xmipp3/viewers/viewer_resolution_bfactor.py -> build/lib/xmipp3/viewers 2026-03-01T18:02:10,009 copying xmipp3/viewers/viewer_volume_strain.py -> build/lib/xmipp3/viewers 2026-03-01T18:02:10,011 copying xmipp3/viewers/plotter.py -> build/lib/xmipp3/viewers 2026-03-01T18:02:10,013 copying xmipp3/viewers/viewer_resolution_monogenic_signal.py -> build/lib/xmipp3/viewers 2026-03-01T18:02:10,015 copying xmipp3/viewers/viewer_validate_fscq.py -> build/lib/xmipp3/viewers 2026-03-01T18:02:10,018 copying xmipp3/viewers/viewer_analyze_local_ctf.py -> build/lib/xmipp3/viewers 2026-03-01T18:02:10,020 copying xmipp3/viewers/viewer_dose_analysis.py -> build/lib/xmipp3/viewers 2026-03-01T18:02:10,022 copying xmipp3/viewers/viewer.py -> build/lib/xmipp3/viewers 2026-03-01T18:02:10,024 copying xmipp3/viewers/viewer_projmatch.py -> build/lib/xmipp3/viewers 2026-03-01T18:02:10,027 copying xmipp3/viewers/viewer_swarm.py -> build/lib/xmipp3/viewers 2026-03-01T18:02:10,029 copying xmipp3/viewers/viewer_resolution_deepres.py -> build/lib/xmipp3/viewers 2026-03-01T18:02:10,031 copying xmipp3/viewers/viewer_reconstruct_highres.py -> build/lib/xmipp3/viewers 2026-03-01T18:02:10,034 copying xmipp3/viewers/viewer_eliminate_empty_images.py -> build/lib/xmipp3/viewers 2026-03-01T18:02:10,036 copying xmipp3/viewers/viewer_ransac.py -> build/lib/xmipp3/viewers 2026-03-01T18:02:10,038 copying xmipp3/viewers/viewer_local_sharpening.py -> build/lib/xmipp3/viewers 2026-03-01T18:02:10,040 copying xmipp3/viewers/viewer_validate_overfitting.py -> build/lib/xmipp3/viewers 2026-03-01T18:02:10,042 copying xmipp3/viewers/__init__.py -> build/lib/xmipp3/viewers 2026-03-01T18:02:10,044 copying xmipp3/viewers/viewer_resolution_directional.py -> build/lib/xmipp3/viewers 2026-03-01T18:02:10,046 copying xmipp3/viewers/viewer_volume_consensus.py -> build/lib/xmipp3/viewers 2026-03-01T18:02:10,048 copying xmipp3/viewers/viewer_validate_nontilt.py -> build/lib/xmipp3/viewers 2026-03-01T18:02:10,050 copying xmipp3/viewers/viewer_structure_map.py -> build/lib/xmipp3/viewers 2026-03-01T18:02:10,052 copying xmipp3/viewers/viewer_cl2d.py -> build/lib/xmipp3/viewers 2026-03-01T18:02:10,055 copying xmipp3/viewers/viewer_deep_consensus.py -> build/lib/xmipp3/viewers 2026-03-01T18:02:10,057 copying xmipp3/viewers/viewer_LL_matrix.py -> build/lib/xmipp3/viewers 2026-03-01T18:02:10,059 copying xmipp3/viewers/viewer_resolution3d.py -> build/lib/xmipp3/viewers 2026-03-01T18:02:10,062 copying xmipp3/viewers/viewer_resolution_fso.py -> build/lib/xmipp3/viewers 2026-03-01T18:02:10,064 copying xmipp3/viewers/viewer_extract_asymmetric_unit.py -> build/lib/xmipp3/viewers 2026-03-01T18:02:10,066 copying xmipp3/viewers/viewer_deep_micrograph_cleaner.py -> build/lib/xmipp3/viewers 2026-03-01T18:02:10,069 creating build/lib/xmipp3/legacy 2026-03-01T18:02:10,070 copying xmipp3/legacy/__init__.py -> build/lib/xmipp3/legacy 2026-03-01T18:02:10,074 creating build/lib/xmipp3/protocols 2026-03-01T18:02:10,075 copying xmipp3/protocols/protocol_compute_likelihood.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,078 copying xmipp3/protocols/protocol_resolution_fso.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,080 copying xmipp3/protocols/protocol_deep_micrograph_screen.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,083 copying xmipp3/protocols/protocol_validate_fscq.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,086 copying xmipp3/protocols/protocol_random_conical_tilt.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,089 copying xmipp3/protocols/protocol_movie_gain.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,091 copying xmipp3/protocols/protocol_eliminate_empty_images.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,094 copying xmipp3/protocols/protocol_compare_angles.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,096 copying xmipp3/protocols/protocol_resolution3d.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,098 copying xmipp3/protocols/protocol_assignment_tilt_pair.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,101 copying xmipp3/protocols/protocol_particle_pick_pairs.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,103 copying xmipp3/protocols/protocol_consensus_local_ctf.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,105 copying xmipp3/protocols/protocol_cl2d.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,108 copying xmipp3/protocols/protocol_create_gallery.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,110 copying xmipp3/protocols/protocol_apply_alignment.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,113 copying xmipp3/protocols/protocol_volume_adjust_sub.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,115 copying xmipp3/protocols/protocol_particle_pick_automatic.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,117 copying xmipp3/protocols/protocol_normalize_strain.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,119 copying xmipp3/protocols/protocol_screen_particles.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,122 copying xmipp3/protocols/protocol_multireference_alignability.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,125 copying xmipp3/protocols/protocol_classes_2d_mapping.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,127 copying xmipp3/protocols/protocol_reconstruct_significant.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,130 copying xmipp3/protocols/protocol_volume_consensus.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,132 copying xmipp3/protocols/protocol_consensus_classes.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,134 copying xmipp3/protocols/protocol_cl2d_clustering.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,137 copying xmipp3/protocols/protocol_structure_map.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,139 copying xmipp3/protocols/protocol_volume_local_adjust.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,141 copying xmipp3/protocols/protocol_particle_pick_remove_duplicates.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,143 copying xmipp3/protocols/protocol_multiple_fscs.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,146 copying xmipp3/protocols/protocol_align_volume.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,148 copying xmipp3/protocols/protocol_ctf_consensus.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,151 copying xmipp3/protocols/protocol_shift_volume.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,153 copying xmipp3/protocols/protocol_apply_tilt_to_ctf.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,155 copying xmipp3/protocols/protocol_apply_transformation_matrix.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,158 copying xmipp3/protocols/protocol_movie_max_shift.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,160 copying xmipp3/protocols/protocol_mics_defocus_balancer.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,163 copying xmipp3/protocols/protocol_extract_asymmetric_unit.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,165 copying xmipp3/protocols/protocol_alignPCA_2D.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,168 copying xmipp3/protocols/protocol_movie_dose_analysis.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,170 copying xmipp3/protocols/protocol_resolution_deepres.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,173 copying xmipp3/protocols/protocol_particle_pick.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,175 copying xmipp3/protocols/protocol_analyze_local_ctf.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,177 copying xmipp3/protocols/protocol_structure_map_zernike3d.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,180 copying xmipp3/protocols/protocol_angular_graph_consistency.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,182 copying xmipp3/protocols/protocol_subtract_projection.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,184 copying xmipp3/protocols/protocol_rotate_volume.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,186 copying xmipp3/protocols/protocol_validate_overfitting.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,189 copying xmipp3/protocols/protocol_denoise_particles.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,191 copying xmipp3/protocols/protocol_cl2d_align.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,193 copying xmipp3/protocols/protocol_reconstruct_highres.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,197 copying xmipp3/protocols/protocol_volume_local_sharpening.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,199 copying xmipp3/protocols/protocol_resolution_monogenic_signal.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,201 copying xmipp3/protocols/protocol_ctf_micrographs.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,204 copying xmipp3/protocols/protocol_ctf_correct_wiener2d.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,206 copying xmipp3/protocols/protocol_extract_particles_pairs.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,209 copying xmipp3/protocols/protocol_phantom_create.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,210 copying xmipp3/protocols/protocol_shift_particles.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,213 copying xmipp3/protocols/protocol_validate_nontilt.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,215 copying xmipp3/protocols/protocol_kerdensom.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,218 copying xmipp3/protocols/protocol_reconstruct_fourier.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,220 copying xmipp3/protocols/__init__.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,222 copying xmipp3/protocols/protocol_volume_deform_zernike3d.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,224 copying xmipp3/protocols/protocol_compare_reprojections.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,227 copying xmipp3/protocols/protocol_preprocess_micrographs.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,229 copying xmipp3/protocols/protocol_extract_particles.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,232 copying xmipp3/protocols/protocol_simulate_ctf.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,234 copying xmipp3/protocols/protocol_convert_pdb.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,236 copying xmipp3/protocols/protocol_screen_deepConsensus.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,240 copying xmipp3/protocols/protocol_flexalign.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,243 copying xmipp3/protocols/protocol_particle_pick_consensus.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,246 copying xmipp3/protocols/protocol_trigger_data.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,248 copying xmipp3/protocols/protocol_pick_noise.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,251 copying xmipp3/protocols/protocol_core_analysis.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,253 copying xmipp3/protocols/protocol_align_volume_and_particles.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,256 copying xmipp3/protocols/protocol_helical_parameters.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,259 copying xmipp3/protocols/protocol_generate_reprojections.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,261 copying xmipp3/protocols/protocol_deep_hand.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,263 copying xmipp3/protocols/protocol_postProcessing_deepPostProcessing.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,266 copying xmipp3/protocols/protocol_ransac.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,268 copying xmipp3/protocols/protocol_movie_alignment_consensus.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,271 copying xmipp3/protocols/protocol_apply_zernike3d.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,273 copying xmipp3/protocols/protocol_resolution_bfactor.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,275 copying xmipp3/protocols/protocol_ml2d.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,277 copying xmipp3/protocols/protocol_write_testC.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,279 copying xmipp3/protocols/protocol_ctf_defocus_group.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,281 copying xmipp3/protocols/protocol_break_symmetry.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,283 copying xmipp3/protocols/protocol_center_particles.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,285 copying xmipp3/protocols/protocol_reconstruct_swarm.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,288 copying xmipp3/protocols/protocol_tilt_analysis.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,290 copying xmipp3/protocols/protocol_write_testP.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,292 copying xmipp3/protocols/protocol_volume_strain.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,295 copying xmipp3/protocols/protocol_movie_split_frames.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,297 copying xmipp3/protocols/protocol_local_ctf.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,299 copying xmipp3/protocols/protocol_resolution_directional.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,301 copying xmipp3/protocols/protocol_ctf_correct_phase.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,303 copying xmipp3/protocols/protocol_rotational_symmetry.py -> build/lib/xmipp3/protocols 2026-03-01T18:02:10,306 creating build/lib/xmipp3/legacy/tests 2026-03-01T18:02:10,307 copying xmipp3/legacy/tests/test_protocols_angular_resolution_alignment.py -> build/lib/xmipp3/legacy/tests 2026-03-01T18:02:10,309 copying xmipp3/legacy/tests/test_protocols_metaprotocol_heterogeneity.py -> build/lib/xmipp3/legacy/tests 2026-03-01T18:02:10,311 copying xmipp3/legacy/tests/test_protocols_metaprotocol_golden_highres.py -> build/lib/xmipp3/legacy/tests 2026-03-01T18:02:10,313 copying xmipp3/legacy/tests/test_protocols_xmipp_movies.py -> build/lib/xmipp3/legacy/tests 2026-03-01T18:02:10,315 copying xmipp3/legacy/tests/test_protocols_mixed_movies.py -> build/lib/xmipp3/legacy/tests 2026-03-01T18:02:10,317 copying xmipp3/legacy/tests/test_protocol_deep_denoising.py -> build/lib/xmipp3/legacy/tests 2026-03-01T18:02:10,319 copying xmipp3/legacy/tests/test_protocols_solid_angles.py -> build/lib/xmipp3/legacy/tests 2026-03-01T18:02:10,321 copying xmipp3/legacy/tests/test_protocols_gpuCorr_semiStreaming.py -> build/lib/xmipp3/legacy/tests 2026-03-01T18:02:10,323 copying xmipp3/legacy/tests/test_protocols_subtract_projection.py -> build/lib/xmipp3/legacy/tests 2026-03-01T18:02:10,326 copying xmipp3/legacy/tests/test_protocols_gpuCorr_classifier.py -> build/lib/xmipp3/legacy/tests 2026-03-01T18:02:10,328 copying xmipp3/legacy/tests/test_protocols_gpuCorr_fullStreaming.py -> build/lib/xmipp3/legacy/tests 2026-03-01T18:02:10,331 creating build/lib/xmipp3/legacy/viewers 2026-03-01T18:02:10,332 copying xmipp3/legacy/viewers/viewer_deep_align.py -> build/lib/xmipp3/legacy/viewers 2026-03-01T18:02:10,335 copying xmipp3/legacy/viewers/viewer_metaprotocol_golden_highres.py -> build/lib/xmipp3/legacy/viewers 2026-03-01T18:02:10,337 copying xmipp3/legacy/viewers/viewer_split_volume.py -> build/lib/xmipp3/legacy/viewers 2026-03-01T18:02:10,339 copying xmipp3/legacy/viewers/viewer_solid_angles.py -> build/lib/xmipp3/legacy/viewers 2026-03-01T18:02:10,340 copying xmipp3/legacy/viewers/viewer_mltomo.py -> build/lib/xmipp3/legacy/viewers 2026-03-01T18:02:10,343 copying xmipp3/legacy/viewers/viewer_angular_resolution_alignment.py -> build/lib/xmipp3/legacy/viewers 2026-03-01T18:02:10,346 creating build/lib/xmipp3/legacy/protocols 2026-03-01T18:02:10,347 copying xmipp3/legacy/protocols/protocol_metaprotocol_golden_highres.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T18:02:10,350 copying xmipp3/legacy/protocols/protocol_classification_gpuCorr.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T18:02:10,354 copying xmipp3/legacy/protocols/protocol_angular_resolution_alignment.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T18:02:10,356 copying xmipp3/legacy/protocols/protocol_split_volume.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T18:02:10,358 copying xmipp3/legacy/protocols/protocol_apply_deformation_zernike3d.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T18:02:10,360 copying xmipp3/legacy/protocols/protocol_reconstruct_heterogeneous.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T18:02:10,363 copying xmipp3/legacy/protocols/protocol_metaprotocol_create_output.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T18:02:10,365 copying xmipp3/legacy/protocols/protocol_extract_particles_movies.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T18:02:10,368 copying xmipp3/legacy/protocols/protocol_movie_opticalflow.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T18:02:10,370 copying xmipp3/legacy/protocols/protocol_subtract_projection.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T18:02:10,372 copying xmipp3/legacy/protocols/protocol_deep_center_predict.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T18:02:10,375 copying xmipp3/legacy/protocols/protocol_classify_kmeans2d.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T18:02:10,377 copying xmipp3/legacy/protocols/protocol_deep_denoising.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T18:02:10,380 copying xmipp3/legacy/protocols/protocol_screen_deeplearning.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T18:02:10,382 copying xmipp3/legacy/protocols/__init__.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T18:02:10,384 copying xmipp3/legacy/protocols/protocol_movie_average.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T18:02:10,386 copying xmipp3/legacy/protocols/protocol_metaprotocol_create_subset.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T18:02:10,388 copying xmipp3/legacy/protocols/protocol_metaprotocol_discrete_heterogeneity_scheduler.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T18:02:10,391 copying xmipp3/legacy/protocols/protocol_rotational_spectra.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T18:02:10,393 copying xmipp3/legacy/protocols/protocol_split_volume_hierarchical_cluster.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T18:02:10,396 copying xmipp3/legacy/protocols/protocol_mltomo.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T18:02:10,399 copying xmipp3/legacy/protocols/protocol_solid_angles.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T18:02:10,402 copying xmipp3/legacy/protocols/protocol_kmeans_clustering.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T18:02:10,404 copying xmipp3/legacy/protocols/protocol_classification_gpuCorr_full.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T18:02:10,407 copying xmipp3/legacy/protocols/protocol_particle_boxsize.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T18:02:10,410 copying xmipp3/legacy/protocols/protocol_deep_align.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T18:02:10,413 copying xmipp3/legacy/protocols/protocol_enrich.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T18:02:10,416 copying xmipp3/legacy/protocols/protocol_classification_gpuCorr_semi.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T18:02:10,418 copying xmipp3/legacy/protocols/protocol_deep_center.py -> build/lib/xmipp3/legacy/protocols 2026-03-01T18:02:10,421 creating build/lib/xmipp3/protocols/protocol_projmatch 2026-03-01T18:02:10,422 copying xmipp3/protocols/protocol_projmatch/projmatch_steps.py -> build/lib/xmipp3/protocols/protocol_projmatch 2026-03-01T18:02:10,425 copying xmipp3/protocols/protocol_projmatch/protocol_projmatch.py -> build/lib/xmipp3/protocols/protocol_projmatch 2026-03-01T18:02:10,428 copying xmipp3/protocols/protocol_projmatch/__init__.py -> build/lib/xmipp3/protocols/protocol_projmatch 2026-03-01T18:02:10,430 copying xmipp3/protocols/protocol_projmatch/projmatch_form.py -> build/lib/xmipp3/protocols/protocol_projmatch 2026-03-01T18:02:10,433 copying xmipp3/protocols/protocol_projmatch/projmatch_initialize.py -> build/lib/xmipp3/protocols/protocol_projmatch 2026-03-01T18:02:10,435 creating build/lib/xmipp3/protocols/protocol_preprocess 2026-03-01T18:02:10,436 copying xmipp3/protocols/protocol_preprocess/protocol_process.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-03-01T18:02:10,439 copying xmipp3/protocols/protocol_preprocess/protocol_filter.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-03-01T18:02:10,442 copying xmipp3/protocols/protocol_preprocess/protocol_mask.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-03-01T18:02:10,444 copying xmipp3/protocols/protocol_preprocess/geometrical_mask.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-03-01T18:02:10,447 copying xmipp3/protocols/protocol_preprocess/protocol_create_mask3d.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-03-01T18:02:10,450 copying xmipp3/protocols/protocol_preprocess/protocol_add_noise.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-03-01T18:02:10,452 copying xmipp3/protocols/protocol_preprocess/protocol_preprocess.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-03-01T18:02:10,455 copying xmipp3/protocols/protocol_preprocess/__init__.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-03-01T18:02:10,457 copying xmipp3/protocols/protocol_preprocess/protocol_create_mask2d.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-03-01T18:02:10,460 copying xmipp3/protocols/protocol_preprocess/protocol_crop_resize.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-03-01T18:02:10,464 copying xmipp3/protocols/protocol_preprocess/protocol_image_operate.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-03-01T18:02:10,467 copying xmipp3/protocols/protocol_preprocess/protocol_movie_resize.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-03-01T18:02:10,470 running egg_info 2026-03-01T18:02:10,484 writing scipion_em_xmipp.egg-info/PKG-INFO 2026-03-01T18:02:10,487 writing dependency_links to scipion_em_xmipp.egg-info/dependency_links.txt 2026-03-01T18:02:10,489 writing entry points to scipion_em_xmipp.egg-info/entry_points.txt 2026-03-01T18:02:10,491 writing requirements to scipion_em_xmipp.egg-info/requires.txt 2026-03-01T18:02:10,492 writing top-level names to scipion_em_xmipp.egg-info/top_level.txt 2026-03-01T18:02:10,538 reading manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt' 2026-03-01T18:02:10,558 reading manifest template 'MANIFEST.in' 2026-03-01T18:02:10,561 adding license file 'LICENSE' 2026-03-01T18:02:10,574 writing manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt' 2026-03-01T18:02:10,585 copying xmipp3/protocols.conf -> build/lib/xmipp3 2026-03-01T18:02:10,588 copying xmipp3/xmipp_logo.png -> build/lib/xmipp3 2026-03-01T18:02:10,592 copying xmipp3/xmipp_logo_devel.png -> build/lib/xmipp3 2026-03-01T18:02:10,626 installing to build/bdist.linux-armv7l/wheel 2026-03-01T18:02:10,626 running install 2026-03-01T18:02:10,651 running install_lib 2026-03-01T18:02:10,656 creating build/bdist.linux-armv7l/wheel 2026-03-01T18:02:10,658 creating build/bdist.linux-armv7l/wheel/xmipp3 2026-03-01T18:02:10,660 copying build/lib/xmipp3/xmipp_logo.png -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-03-01T18:02:10,663 copying build/lib/xmipp3/utils.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-03-01T18:02:10,666 creating build/bdist.linux-armv7l/wheel/xmipp3/convert 2026-03-01T18:02:10,668 copying build/lib/xmipp3/convert/dataimport.py -> build/bdist.linux-armv7l/wheel/./xmipp3/convert 2026-03-01T18:02:10,671 copying build/lib/xmipp3/convert/convert.py -> build/bdist.linux-armv7l/wheel/./xmipp3/convert 2026-03-01T18:02:10,674 copying build/lib/xmipp3/convert/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/convert 2026-03-01T18:02:10,676 copying build/lib/xmipp3/convert/io_coordinates.py -> build/bdist.linux-armv7l/wheel/./xmipp3/convert 2026-03-01T18:02:10,679 creating build/bdist.linux-armv7l/wheel/xmipp3/tests 2026-03-01T18:02:10,680 copying build/lib/xmipp3/tests/test_protocols_fso.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T18:02:10,683 copying build/lib/xmipp3/tests/test_protocols_xmipp_movie_resize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T18:02:10,685 copying build/lib/xmipp3/tests/test_protocols_xmipp_2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T18:02:10,689 copying build/lib/xmipp3/tests/test_protocol_angular_graph_consistency.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T18:02:10,691 copying build/lib/xmipp3/tests/test_protocols_local_defocus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T18:02:10,693 copying build/lib/xmipp3/tests/test_protocols_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T18:02:10,696 copying build/lib/xmipp3/tests/test_protocols_monores.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T18:02:10,699 copying build/lib/xmipp3/tests/test_protocol_multiple_fsc.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T18:02:10,701 copying build/lib/xmipp3/tests/test_protocol_consensus_classes3D.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T18:02:10,703 copying build/lib/xmipp3/tests/test_protocols_realignment_classes.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T18:02:10,705 copying build/lib/xmipp3/tests/test_protocols_xmipp_3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T18:02:10,709 copying build/lib/xmipp3/tests/test_protocol_ctf_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T18:02:10,712 copying build/lib/xmipp3/tests/test_protocol_extract_asymmetric_unit.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T18:02:10,714 copying build/lib/xmipp3/tests/test_protocols_deepres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T18:02:10,716 copying build/lib/xmipp3/tests/test_protocols_continuousflex.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T18:02:10,719 copying build/lib/xmipp3/tests/test_protocol_likelihood.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T18:02:10,721 copying build/lib/xmipp3/tests/test_protocols_localdeblur.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T18:02:10,723 copying build/lib/xmipp3/tests/test_protocol_validate_fscq.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T18:02:10,725 copying build/lib/xmipp3/tests/test_protocol_split_frames.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T18:02:10,727 copying build/lib/xmipp3/tests/test_protocols_xmipp_movies.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T18:02:10,731 copying build/lib/xmipp3/tests/test_protocols_add_noise.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T18:02:10,733 copying build/lib/xmipp3/tests/test_protocol_compare_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T18:02:10,736 copying build/lib/xmipp3/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T18:02:10,737 copying build/lib/xmipp3/tests/test_protocols_deepVolPostprocessing.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T18:02:10,739 copying build/lib/xmipp3/tests/test_protocol_apply_transformation_matrix.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T18:02:10,742 copying build/lib/xmipp3/tests/test_protocols_deepcenter_predict.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T18:02:10,744 copying build/lib/xmipp3/tests/test_protocol_screen_deepConsensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T18:02:10,746 copying build/lib/xmipp3/tests/test_convert_xmipp.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T18:02:10,749 copying build/lib/xmipp3/tests/test_protocol_monodir.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T18:02:10,751 copying build/lib/xmipp3/tests/test_protocol_reconstruct_fourier.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T18:02:10,752 copying build/lib/xmipp3/tests/test_protocol_validate_overfitting.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T18:02:10,754 copying build/lib/xmipp3/tests/test_protocols_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T18:02:10,756 copying build/lib/xmipp3/tests/test_protocol_multireference_alignability.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T18:02:10,758 copying build/lib/xmipp3/tests/test_protocol_simulate_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T18:02:10,760 copying build/lib/xmipp3/tests/test_protocols_xmipp_mics.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-03-01T18:02:10,763 copying build/lib/xmipp3/protocolsCollectInfo.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-03-01T18:02:10,766 copying build/lib/xmipp3/bibtex.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-03-01T18:02:10,768 copying build/lib/xmipp3/xmipp_logo_devel.png -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-03-01T18:02:10,781 copying build/lib/xmipp3/base.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-03-01T18:02:10,785 creating build/bdist.linux-armv7l/wheel/xmipp3/viewers 2026-03-01T18:02:10,786 copying build/lib/xmipp3/viewers/viewer_volume_deform_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T18:02:10,789 copying build/lib/xmipp3/viewers/viewer_deepEMHancer.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T18:02:10,792 copying build/lib/xmipp3/viewers/viewer_apply_tilt_to_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T18:02:10,794 copying build/lib/xmipp3/viewers/viewer_volume_subtraction.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T18:02:10,797 copying build/lib/xmipp3/viewers/viewer_pdb_deform_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T18:02:10,799 copying build/lib/xmipp3/viewers/viewer_normalize_strain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T18:02:10,802 copying build/lib/xmipp3/viewers/viewer_movie_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T18:02:10,804 copying build/lib/xmipp3/viewers/viewer_subtract_projection.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T18:02:10,807 copying build/lib/xmipp3/viewers/viewer_consensus_classes.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T18:02:10,809 copying build/lib/xmipp3/viewers/viewer_cl2d_clustering.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T18:02:10,811 copying build/lib/xmipp3/viewers/viewer_ctf_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T18:02:10,814 copying build/lib/xmipp3/viewers/viewer_ml2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T18:02:10,816 copying build/lib/xmipp3/viewers/viewer_resolution_bfactor.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T18:02:10,818 copying build/lib/xmipp3/viewers/viewer_volume_strain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T18:02:10,820 copying build/lib/xmipp3/viewers/plotter.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T18:02:10,822 copying build/lib/xmipp3/viewers/viewer_resolution_monogenic_signal.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T18:02:10,825 copying build/lib/xmipp3/viewers/viewer_validate_fscq.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T18:02:10,827 copying build/lib/xmipp3/viewers/viewer_analyze_local_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T18:02:10,830 copying build/lib/xmipp3/viewers/viewer_dose_analysis.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T18:02:10,832 copying build/lib/xmipp3/viewers/viewer.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T18:02:10,834 copying build/lib/xmipp3/viewers/viewer_projmatch.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T18:02:10,837 copying build/lib/xmipp3/viewers/viewer_swarm.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T18:02:10,839 copying build/lib/xmipp3/viewers/viewer_resolution_deepres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T18:02:10,841 copying build/lib/xmipp3/viewers/viewer_reconstruct_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T18:02:10,843 copying build/lib/xmipp3/viewers/viewer_eliminate_empty_images.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T18:02:10,845 copying build/lib/xmipp3/viewers/viewer_ransac.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T18:02:10,847 copying build/lib/xmipp3/viewers/viewer_local_sharpening.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T18:02:10,849 copying build/lib/xmipp3/viewers/viewer_validate_overfitting.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T18:02:10,851 copying build/lib/xmipp3/viewers/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T18:02:10,853 copying build/lib/xmipp3/viewers/viewer_resolution_directional.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T18:02:10,856 copying build/lib/xmipp3/viewers/viewer_volume_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T18:02:10,858 copying build/lib/xmipp3/viewers/viewer_validate_nontilt.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T18:02:10,860 copying build/lib/xmipp3/viewers/viewer_structure_map.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T18:02:10,862 copying build/lib/xmipp3/viewers/viewer_cl2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T18:02:10,864 copying build/lib/xmipp3/viewers/viewer_deep_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T18:02:10,866 copying build/lib/xmipp3/viewers/viewer_LL_matrix.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T18:02:10,869 copying build/lib/xmipp3/viewers/viewer_resolution3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T18:02:10,872 copying build/lib/xmipp3/viewers/viewer_resolution_fso.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T18:02:10,874 copying build/lib/xmipp3/viewers/viewer_extract_asymmetric_unit.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T18:02:10,876 copying build/lib/xmipp3/viewers/viewer_deep_micrograph_cleaner.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-03-01T18:02:10,878 copying build/lib/xmipp3/protocols.conf -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-03-01T18:02:10,881 copying build/lib/xmipp3/wizards.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-03-01T18:02:10,883 copying build/lib/xmipp3/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-03-01T18:02:10,887 creating build/bdist.linux-armv7l/wheel/xmipp3/legacy 2026-03-01T18:02:10,888 creating build/bdist.linux-armv7l/wheel/xmipp3/legacy/tests 2026-03-01T18:02:10,889 copying build/lib/xmipp3/legacy/tests/test_protocols_angular_resolution_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-03-01T18:02:10,891 copying build/lib/xmipp3/legacy/tests/test_protocols_metaprotocol_heterogeneity.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-03-01T18:02:10,893 copying build/lib/xmipp3/legacy/tests/test_protocols_metaprotocol_golden_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-03-01T18:02:10,895 copying build/lib/xmipp3/legacy/tests/test_protocols_xmipp_movies.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-03-01T18:02:10,898 copying build/lib/xmipp3/legacy/tests/test_protocols_mixed_movies.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-03-01T18:02:10,900 copying build/lib/xmipp3/legacy/tests/test_protocol_deep_denoising.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-03-01T18:02:10,902 copying build/lib/xmipp3/legacy/tests/test_protocols_solid_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-03-01T18:02:10,904 copying build/lib/xmipp3/legacy/tests/test_protocols_gpuCorr_semiStreaming.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-03-01T18:02:10,906 copying build/lib/xmipp3/legacy/tests/test_protocols_subtract_projection.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-03-01T18:02:10,909 copying build/lib/xmipp3/legacy/tests/test_protocols_gpuCorr_classifier.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-03-01T18:02:10,911 copying build/lib/xmipp3/legacy/tests/test_protocols_gpuCorr_fullStreaming.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-03-01T18:02:10,914 creating build/bdist.linux-armv7l/wheel/xmipp3/legacy/viewers 2026-03-01T18:02:10,915 copying build/lib/xmipp3/legacy/viewers/viewer_deep_align.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers 2026-03-01T18:02:10,918 copying build/lib/xmipp3/legacy/viewers/viewer_metaprotocol_golden_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers 2026-03-01T18:02:10,920 copying build/lib/xmipp3/legacy/viewers/viewer_split_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers 2026-03-01T18:02:10,922 copying build/lib/xmipp3/legacy/viewers/viewer_solid_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers 2026-03-01T18:02:10,924 copying build/lib/xmipp3/legacy/viewers/viewer_mltomo.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers 2026-03-01T18:02:10,926 copying build/lib/xmipp3/legacy/viewers/viewer_angular_resolution_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers 2026-03-01T18:02:10,928 copying build/lib/xmipp3/legacy/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy 2026-03-01T18:02:10,931 creating build/bdist.linux-armv7l/wheel/xmipp3/legacy/protocols 2026-03-01T18:02:10,932 copying build/lib/xmipp3/legacy/protocols/protocol_metaprotocol_golden_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T18:02:10,935 copying build/lib/xmipp3/legacy/protocols/protocol_classification_gpuCorr.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T18:02:10,938 copying build/lib/xmipp3/legacy/protocols/protocol_angular_resolution_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T18:02:10,940 copying build/lib/xmipp3/legacy/protocols/protocol_split_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T18:02:10,942 copying build/lib/xmipp3/legacy/protocols/protocol_apply_deformation_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T18:02:10,944 copying build/lib/xmipp3/legacy/protocols/protocol_reconstruct_heterogeneous.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T18:02:10,947 copying build/lib/xmipp3/legacy/protocols/protocol_metaprotocol_create_output.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T18:02:10,950 copying build/lib/xmipp3/legacy/protocols/protocol_extract_particles_movies.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T18:02:10,953 copying build/lib/xmipp3/legacy/protocols/protocol_movie_opticalflow.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T18:02:10,955 copying build/lib/xmipp3/legacy/protocols/protocol_subtract_projection.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T18:02:10,958 copying build/lib/xmipp3/legacy/protocols/protocol_deep_center_predict.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T18:02:10,960 copying build/lib/xmipp3/legacy/protocols/protocol_classify_kmeans2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T18:02:10,963 copying build/lib/xmipp3/legacy/protocols/protocol_deep_denoising.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T18:02:10,966 copying build/lib/xmipp3/legacy/protocols/protocol_screen_deeplearning.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T18:02:10,968 copying build/lib/xmipp3/legacy/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T18:02:10,970 copying build/lib/xmipp3/legacy/protocols/protocol_movie_average.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T18:02:10,972 copying build/lib/xmipp3/legacy/protocols/protocol_metaprotocol_create_subset.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T18:02:10,974 copying build/lib/xmipp3/legacy/protocols/protocol_metaprotocol_discrete_heterogeneity_scheduler.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T18:02:10,977 copying build/lib/xmipp3/legacy/protocols/protocol_rotational_spectra.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T18:02:10,979 copying build/lib/xmipp3/legacy/protocols/protocol_split_volume_hierarchical_cluster.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T18:02:10,982 copying build/lib/xmipp3/legacy/protocols/protocol_mltomo.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T18:02:10,985 copying build/lib/xmipp3/legacy/protocols/protocol_solid_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T18:02:10,988 copying build/lib/xmipp3/legacy/protocols/protocol_kmeans_clustering.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T18:02:10,990 copying build/lib/xmipp3/legacy/protocols/protocol_classification_gpuCorr_full.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T18:02:10,993 copying build/lib/xmipp3/legacy/protocols/protocol_particle_boxsize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T18:02:10,996 copying build/lib/xmipp3/legacy/protocols/protocol_deep_align.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T18:02:10,998 copying build/lib/xmipp3/legacy/protocols/protocol_enrich.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T18:02:11,001 copying build/lib/xmipp3/legacy/protocols/protocol_classification_gpuCorr_semi.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T18:02:11,004 copying build/lib/xmipp3/legacy/protocols/protocol_deep_center.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-03-01T18:02:11,006 copying build/lib/xmipp3/constants.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-03-01T18:02:11,008 copying build/lib/xmipp3/version.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-03-01T18:02:11,010 copying build/lib/xmipp3/logParser.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-03-01T18:02:11,014 creating build/bdist.linux-armv7l/wheel/xmipp3/protocols 2026-03-01T18:02:11,015 copying build/lib/xmipp3/protocols/protocol_compute_likelihood.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,018 copying build/lib/xmipp3/protocols/protocol_resolution_fso.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,020 copying build/lib/xmipp3/protocols/protocol_deep_micrograph_screen.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,023 copying build/lib/xmipp3/protocols/protocol_validate_fscq.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,026 copying build/lib/xmipp3/protocols/protocol_random_conical_tilt.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,028 copying build/lib/xmipp3/protocols/protocol_movie_gain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,031 copying build/lib/xmipp3/protocols/protocol_eliminate_empty_images.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,034 copying build/lib/xmipp3/protocols/protocol_compare_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,036 copying build/lib/xmipp3/protocols/protocol_resolution3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,038 copying build/lib/xmipp3/protocols/protocol_assignment_tilt_pair.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,040 copying build/lib/xmipp3/protocols/protocol_particle_pick_pairs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,043 copying build/lib/xmipp3/protocols/protocol_consensus_local_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,045 copying build/lib/xmipp3/protocols/protocol_cl2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,048 copying build/lib/xmipp3/protocols/protocol_create_gallery.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,050 copying build/lib/xmipp3/protocols/protocol_apply_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,052 copying build/lib/xmipp3/protocols/protocol_volume_adjust_sub.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,055 creating build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_projmatch 2026-03-01T18:02:11,056 copying build/lib/xmipp3/protocols/protocol_projmatch/projmatch_steps.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch 2026-03-01T18:02:11,059 copying build/lib/xmipp3/protocols/protocol_projmatch/protocol_projmatch.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch 2026-03-01T18:02:11,061 copying build/lib/xmipp3/protocols/protocol_projmatch/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch 2026-03-01T18:02:11,063 copying build/lib/xmipp3/protocols/protocol_projmatch/projmatch_form.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch 2026-03-01T18:02:11,066 copying build/lib/xmipp3/protocols/protocol_projmatch/projmatch_initialize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch 2026-03-01T18:02:11,068 copying build/lib/xmipp3/protocols/protocol_particle_pick_automatic.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,071 copying build/lib/xmipp3/protocols/protocol_normalize_strain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,073 copying build/lib/xmipp3/protocols/protocol_screen_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,076 copying build/lib/xmipp3/protocols/protocol_multireference_alignability.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,078 copying build/lib/xmipp3/protocols/protocol_classes_2d_mapping.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,081 copying build/lib/xmipp3/protocols/protocol_reconstruct_significant.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,084 copying build/lib/xmipp3/protocols/protocol_volume_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,086 copying build/lib/xmipp3/protocols/protocol_consensus_classes.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,089 copying build/lib/xmipp3/protocols/protocol_cl2d_clustering.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,092 copying build/lib/xmipp3/protocols/protocol_structure_map.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,094 copying build/lib/xmipp3/protocols/protocol_volume_local_adjust.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,097 copying build/lib/xmipp3/protocols/protocol_particle_pick_remove_duplicates.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,099 copying build/lib/xmipp3/protocols/protocol_multiple_fscs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,101 copying build/lib/xmipp3/protocols/protocol_align_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,104 copying build/lib/xmipp3/protocols/protocol_ctf_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,107 copying build/lib/xmipp3/protocols/protocol_shift_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,109 copying build/lib/xmipp3/protocols/protocol_apply_tilt_to_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,111 copying build/lib/xmipp3/protocols/protocol_apply_transformation_matrix.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,113 copying build/lib/xmipp3/protocols/protocol_movie_max_shift.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,116 copying build/lib/xmipp3/protocols/protocol_mics_defocus_balancer.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,119 copying build/lib/xmipp3/protocols/protocol_extract_asymmetric_unit.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,121 copying build/lib/xmipp3/protocols/protocol_alignPCA_2D.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,124 copying build/lib/xmipp3/protocols/protocol_movie_dose_analysis.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,127 creating build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_preprocess 2026-03-01T18:02:11,128 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_process.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-03-01T18:02:11,131 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_filter.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-03-01T18:02:11,133 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_mask.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-03-01T18:02:11,136 copying build/lib/xmipp3/protocols/protocol_preprocess/geometrical_mask.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-03-01T18:02:11,138 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_create_mask3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-03-01T18:02:11,141 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_add_noise.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-03-01T18:02:11,144 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_preprocess.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-03-01T18:02:11,146 copying build/lib/xmipp3/protocols/protocol_preprocess/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-03-01T18:02:11,148 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_create_mask2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-03-01T18:02:11,151 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_crop_resize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-03-01T18:02:11,153 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_image_operate.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-03-01T18:02:11,156 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_movie_resize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-03-01T18:02:11,159 copying build/lib/xmipp3/protocols/protocol_resolution_deepres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,161 copying build/lib/xmipp3/protocols/protocol_particle_pick.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,164 copying build/lib/xmipp3/protocols/protocol_analyze_local_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,166 copying build/lib/xmipp3/protocols/protocol_structure_map_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,168 copying build/lib/xmipp3/protocols/protocol_angular_graph_consistency.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,171 copying build/lib/xmipp3/protocols/protocol_subtract_projection.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,174 copying build/lib/xmipp3/protocols/protocol_rotate_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,176 copying build/lib/xmipp3/protocols/protocol_validate_overfitting.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,178 copying build/lib/xmipp3/protocols/protocol_denoise_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,180 copying build/lib/xmipp3/protocols/protocol_cl2d_align.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,182 copying build/lib/xmipp3/protocols/protocol_reconstruct_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,186 copying build/lib/xmipp3/protocols/protocol_volume_local_sharpening.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,189 copying build/lib/xmipp3/protocols/protocol_resolution_monogenic_signal.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,191 copying build/lib/xmipp3/protocols/protocol_ctf_micrographs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,194 copying build/lib/xmipp3/protocols/protocol_ctf_correct_wiener2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,196 copying build/lib/xmipp3/protocols/protocol_extract_particles_pairs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,199 copying build/lib/xmipp3/protocols/protocol_phantom_create.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,201 copying build/lib/xmipp3/protocols/protocol_shift_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,203 copying build/lib/xmipp3/protocols/protocol_validate_nontilt.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,206 copying build/lib/xmipp3/protocols/protocol_kerdensom.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,208 copying build/lib/xmipp3/protocols/protocol_reconstruct_fourier.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,211 copying build/lib/xmipp3/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,213 copying build/lib/xmipp3/protocols/protocol_volume_deform_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,216 copying build/lib/xmipp3/protocols/protocol_compare_reprojections.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,218 copying build/lib/xmipp3/protocols/protocol_preprocess_micrographs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,221 copying build/lib/xmipp3/protocols/protocol_extract_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,224 copying build/lib/xmipp3/protocols/protocol_simulate_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,226 copying build/lib/xmipp3/protocols/protocol_convert_pdb.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,228 copying build/lib/xmipp3/protocols/protocol_screen_deepConsensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,233 copying build/lib/xmipp3/protocols/protocol_flexalign.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,236 copying build/lib/xmipp3/protocols/protocol_particle_pick_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,238 copying build/lib/xmipp3/protocols/protocol_trigger_data.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,241 copying build/lib/xmipp3/protocols/protocol_pick_noise.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,243 copying build/lib/xmipp3/protocols/protocol_core_analysis.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,246 copying build/lib/xmipp3/protocols/protocol_align_volume_and_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,248 copying build/lib/xmipp3/protocols/protocol_helical_parameters.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,250 copying build/lib/xmipp3/protocols/protocol_generate_reprojections.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,253 copying build/lib/xmipp3/protocols/protocol_deep_hand.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,255 copying build/lib/xmipp3/protocols/protocol_postProcessing_deepPostProcessing.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,257 copying build/lib/xmipp3/protocols/protocol_ransac.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,260 copying build/lib/xmipp3/protocols/protocol_movie_alignment_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,263 copying build/lib/xmipp3/protocols/protocol_apply_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,266 copying build/lib/xmipp3/protocols/protocol_resolution_bfactor.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,269 copying build/lib/xmipp3/protocols/protocol_ml2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,272 copying build/lib/xmipp3/protocols/protocol_write_testC.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,275 copying build/lib/xmipp3/protocols/protocol_ctf_defocus_group.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,278 copying build/lib/xmipp3/protocols/protocol_break_symmetry.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,281 copying build/lib/xmipp3/protocols/protocol_center_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,284 copying build/lib/xmipp3/protocols/protocol_reconstruct_swarm.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,287 copying build/lib/xmipp3/protocols/protocol_tilt_analysis.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,290 copying build/lib/xmipp3/protocols/protocol_write_testP.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,293 copying build/lib/xmipp3/protocols/protocol_volume_strain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,296 copying build/lib/xmipp3/protocols/protocol_movie_split_frames.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,299 copying build/lib/xmipp3/protocols/protocol_local_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,301 copying build/lib/xmipp3/protocols/protocol_resolution_directional.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,304 copying build/lib/xmipp3/protocols/protocol_ctf_correct_phase.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,307 copying build/lib/xmipp3/protocols/protocol_rotational_symmetry.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-03-01T18:02:11,310 copying build/lib/xmipp3/programs.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-03-01T18:02:11,313 copying build/lib/xmipp3/checkProtocolsConf.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-03-01T18:02:11,315 running install_egg_info 2026-03-01T18:02:11,323 Copying scipion_em_xmipp.egg-info to build/bdist.linux-armv7l/wheel/./scipion_em_xmipp-28.0.1-py3.11.egg-info 2026-03-01T18:02:11,338 running install_scripts 2026-03-01T18:02:11,355 creating build/bdist.linux-armv7l/wheel/scipion_em_xmipp-28.0.1.dist-info/WHEEL 2026-03-01T18:02:11,359 creating '/tmp/pip-wheel-34igqts5/.tmp-b6bmywrc/scipion_em_xmipp-28.0.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-03-01T18:02:11,368 adding 'scipion_em_xmipp-28.0.1.dist-info/licenses/LICENSE' 2026-03-01T18:02:11,371 adding 'xmipp3/__init__.py' 2026-03-01T18:02:11,374 adding 'xmipp3/base.py' 2026-03-01T18:02:11,378 adding 'xmipp3/bibtex.py' 2026-03-01T18:02:11,379 adding 'xmipp3/checkProtocolsConf.py' 2026-03-01T18:02:11,381 adding 'xmipp3/constants.py' 2026-03-01T18:02:11,382 adding 'xmipp3/logParser.py' 2026-03-01T18:02:11,384 adding 'xmipp3/programs.py' 2026-03-01T18:02:11,386 adding 'xmipp3/protocols.conf' 2026-03-01T18:02:11,388 adding 'xmipp3/protocolsCollectInfo.py' 2026-03-01T18:02:11,390 adding 'xmipp3/utils.py' 2026-03-01T18:02:11,392 adding 'xmipp3/version.py' 2026-03-01T18:02:11,394 adding 'xmipp3/wizards.py' 2026-03-01T18:02:11,405 adding 'xmipp3/xmipp_logo.png' 2026-03-01T18:02:11,496 adding 'xmipp3/xmipp_logo_devel.png' 2026-03-01T18:02:11,502 adding 'xmipp3/convert/__init__.py' 2026-03-01T18:02:11,510 adding 'xmipp3/convert/convert.py' 2026-03-01T18:02:11,513 adding 'xmipp3/convert/dataimport.py' 2026-03-01T18:02:11,514 adding 'xmipp3/convert/io_coordinates.py' 2026-03-01T18:02:11,516 adding 'xmipp3/legacy/__init__.py' 2026-03-01T18:02:11,518 adding 'xmipp3/legacy/protocols/__init__.py' 2026-03-01T18:02:11,520 adding 'xmipp3/legacy/protocols/protocol_angular_resolution_alignment.py' 2026-03-01T18:02:11,521 adding 'xmipp3/legacy/protocols/protocol_apply_deformation_zernike3d.py' 2026-03-01T18:02:11,525 adding 'xmipp3/legacy/protocols/protocol_classification_gpuCorr.py' 2026-03-01T18:02:11,529 adding 'xmipp3/legacy/protocols/protocol_classification_gpuCorr_full.py' 2026-03-01T18:02:11,532 adding 'xmipp3/legacy/protocols/protocol_classification_gpuCorr_semi.py' 2026-03-01T18:02:11,534 adding 'xmipp3/legacy/protocols/protocol_classify_kmeans2d.py' 2026-03-01T18:02:11,538 adding 'xmipp3/legacy/protocols/protocol_deep_align.py' 2026-03-01T18:02:11,540 adding 'xmipp3/legacy/protocols/protocol_deep_center.py' 2026-03-01T18:02:11,542 adding 'xmipp3/legacy/protocols/protocol_deep_center_predict.py' 2026-03-01T18:02:11,544 adding 'xmipp3/legacy/protocols/protocol_deep_denoising.py' 2026-03-01T18:02:11,547 adding 'xmipp3/legacy/protocols/protocol_enrich.py' 2026-03-01T18:02:11,550 adding 'xmipp3/legacy/protocols/protocol_extract_particles_movies.py' 2026-03-01T18:02:11,552 adding 'xmipp3/legacy/protocols/protocol_kmeans_clustering.py' 2026-03-01T18:02:11,553 adding 'xmipp3/legacy/protocols/protocol_metaprotocol_create_output.py' 2026-03-01T18:02:11,555 adding 'xmipp3/legacy/protocols/protocol_metaprotocol_create_subset.py' 2026-03-01T18:02:11,557 adding 'xmipp3/legacy/protocols/protocol_metaprotocol_discrete_heterogeneity_scheduler.py' 2026-03-01T18:02:11,561 adding 'xmipp3/legacy/protocols/protocol_metaprotocol_golden_highres.py' 2026-03-01T18:02:11,564 adding 'xmipp3/legacy/protocols/protocol_mltomo.py' 2026-03-01T18:02:11,566 adding 'xmipp3/legacy/protocols/protocol_movie_average.py' 2026-03-01T18:02:11,569 adding 'xmipp3/legacy/protocols/protocol_movie_opticalflow.py' 2026-03-01T18:02:11,570 adding 'xmipp3/legacy/protocols/protocol_particle_boxsize.py' 2026-03-01T18:02:11,575 adding 'xmipp3/legacy/protocols/protocol_reconstruct_heterogeneous.py' 2026-03-01T18:02:11,577 adding 'xmipp3/legacy/protocols/protocol_rotational_spectra.py' 2026-03-01T18:02:11,579 adding 'xmipp3/legacy/protocols/protocol_screen_deeplearning.py' 2026-03-01T18:02:11,583 adding 'xmipp3/legacy/protocols/protocol_solid_angles.py' 2026-03-01T18:02:11,585 adding 'xmipp3/legacy/protocols/protocol_split_volume.py' 2026-03-01T18:02:11,589 adding 'xmipp3/legacy/protocols/protocol_split_volume_hierarchical_cluster.py' 2026-03-01T18:02:11,591 adding 'xmipp3/legacy/protocols/protocol_subtract_projection.py' 2026-03-01T18:02:11,593 adding 'xmipp3/legacy/tests/test_protocol_deep_denoising.py' 2026-03-01T18:02:11,595 adding 'xmipp3/legacy/tests/test_protocols_angular_resolution_alignment.py' 2026-03-01T18:02:11,596 adding 'xmipp3/legacy/tests/test_protocols_gpuCorr_classifier.py' 2026-03-01T18:02:11,598 adding 'xmipp3/legacy/tests/test_protocols_gpuCorr_fullStreaming.py' 2026-03-01T18:02:11,599 adding 'xmipp3/legacy/tests/test_protocols_gpuCorr_semiStreaming.py' 2026-03-01T18:02:11,600 adding 'xmipp3/legacy/tests/test_protocols_metaprotocol_golden_highres.py' 2026-03-01T18:02:11,602 adding 'xmipp3/legacy/tests/test_protocols_metaprotocol_heterogeneity.py' 2026-03-01T18:02:11,603 adding 'xmipp3/legacy/tests/test_protocols_mixed_movies.py' 2026-03-01T18:02:11,605 adding 'xmipp3/legacy/tests/test_protocols_solid_angles.py' 2026-03-01T18:02:11,611 adding 'xmipp3/legacy/tests/test_protocols_subtract_projection.py' 2026-03-01T18:02:11,613 adding 'xmipp3/legacy/tests/test_protocols_xmipp_movies.py' 2026-03-01T18:02:11,615 adding 'xmipp3/legacy/viewers/viewer_angular_resolution_alignment.py' 2026-03-01T18:02:11,616 adding 'xmipp3/legacy/viewers/viewer_deep_align.py' 2026-03-01T18:02:11,618 adding 'xmipp3/legacy/viewers/viewer_metaprotocol_golden_highres.py' 2026-03-01T18:02:11,620 adding 'xmipp3/legacy/viewers/viewer_mltomo.py' 2026-03-01T18:02:11,621 adding 'xmipp3/legacy/viewers/viewer_solid_angles.py' 2026-03-01T18:02:11,622 adding 'xmipp3/legacy/viewers/viewer_split_volume.py' 2026-03-01T18:02:11,627 adding 'xmipp3/protocols/__init__.py' 2026-03-01T18:02:11,630 adding 'xmipp3/protocols/protocol_alignPCA_2D.py' 2026-03-01T18:02:11,633 adding 'xmipp3/protocols/protocol_align_volume.py' 2026-03-01T18:02:11,635 adding 'xmipp3/protocols/protocol_align_volume_and_particles.py' 2026-03-01T18:02:11,637 adding 'xmipp3/protocols/protocol_analyze_local_ctf.py' 2026-03-01T18:02:11,640 adding 'xmipp3/protocols/protocol_angular_graph_consistency.py' 2026-03-01T18:02:11,642 adding 'xmipp3/protocols/protocol_apply_alignment.py' 2026-03-01T18:02:11,643 adding 'xmipp3/protocols/protocol_apply_tilt_to_ctf.py' 2026-03-01T18:02:11,645 adding 'xmipp3/protocols/protocol_apply_transformation_matrix.py' 2026-03-01T18:02:11,647 adding 'xmipp3/protocols/protocol_apply_zernike3d.py' 2026-03-01T18:02:11,649 adding 'xmipp3/protocols/protocol_assignment_tilt_pair.py' 2026-03-01T18:02:11,650 adding 'xmipp3/protocols/protocol_break_symmetry.py' 2026-03-01T18:02:11,652 adding 'xmipp3/protocols/protocol_center_particles.py' 2026-03-01T18:02:11,655 adding 'xmipp3/protocols/protocol_cl2d.py' 2026-03-01T18:02:11,657 adding 'xmipp3/protocols/protocol_cl2d_align.py' 2026-03-01T18:02:11,659 adding 'xmipp3/protocols/protocol_cl2d_clustering.py' 2026-03-01T18:02:11,662 adding 'xmipp3/protocols/protocol_classes_2d_mapping.py' 2026-03-01T18:02:11,664 adding 'xmipp3/protocols/protocol_compare_angles.py' 2026-03-01T18:02:11,667 adding 'xmipp3/protocols/protocol_compare_reprojections.py' 2026-03-01T18:02:11,670 adding 'xmipp3/protocols/protocol_compute_likelihood.py' 2026-03-01T18:02:11,673 adding 'xmipp3/protocols/protocol_consensus_classes.py' 2026-03-01T18:02:11,675 adding 'xmipp3/protocols/protocol_consensus_local_ctf.py' 2026-03-01T18:02:11,677 adding 'xmipp3/protocols/protocol_convert_pdb.py' 2026-03-01T18:02:11,679 adding 'xmipp3/protocols/protocol_core_analysis.py' 2026-03-01T18:02:11,681 adding 'xmipp3/protocols/protocol_create_gallery.py' 2026-03-01T18:02:11,685 adding 'xmipp3/protocols/protocol_ctf_consensus.py' 2026-03-01T18:02:11,687 adding 'xmipp3/protocols/protocol_ctf_correct_phase.py' 2026-03-01T18:02:11,689 adding 'xmipp3/protocols/protocol_ctf_correct_wiener2d.py' 2026-03-01T18:02:11,691 adding 'xmipp3/protocols/protocol_ctf_defocus_group.py' 2026-03-01T18:02:11,694 adding 'xmipp3/protocols/protocol_ctf_micrographs.py' 2026-03-01T18:02:11,695 adding 'xmipp3/protocols/protocol_deep_hand.py' 2026-03-01T18:02:11,699 adding 'xmipp3/protocols/protocol_deep_micrograph_screen.py' 2026-03-01T18:02:11,701 adding 'xmipp3/protocols/protocol_denoise_particles.py' 2026-03-01T18:02:11,703 adding 'xmipp3/protocols/protocol_eliminate_empty_images.py' 2026-03-01T18:02:11,705 adding 'xmipp3/protocols/protocol_extract_asymmetric_unit.py' 2026-03-01T18:02:11,708 adding 'xmipp3/protocols/protocol_extract_particles.py' 2026-03-01T18:02:11,712 adding 'xmipp3/protocols/protocol_extract_particles_pairs.py' 2026-03-01T18:02:11,714 adding 'xmipp3/protocols/protocol_flexalign.py' 2026-03-01T18:02:11,716 adding 'xmipp3/protocols/protocol_generate_reprojections.py' 2026-03-01T18:02:11,718 adding 'xmipp3/protocols/protocol_helical_parameters.py' 2026-03-01T18:02:11,720 adding 'xmipp3/protocols/protocol_kerdensom.py' 2026-03-01T18:02:11,722 adding 'xmipp3/protocols/protocol_local_ctf.py' 2026-03-01T18:02:11,724 adding 'xmipp3/protocols/protocol_mics_defocus_balancer.py' 2026-03-01T18:02:11,726 adding 'xmipp3/protocols/protocol_ml2d.py' 2026-03-01T18:02:11,730 adding 'xmipp3/protocols/protocol_movie_alignment_consensus.py' 2026-03-01T18:02:11,733 adding 'xmipp3/protocols/protocol_movie_dose_analysis.py' 2026-03-01T18:02:11,736 adding 'xmipp3/protocols/protocol_movie_gain.py' 2026-03-01T18:02:11,739 adding 'xmipp3/protocols/protocol_movie_max_shift.py' 2026-03-01T18:02:11,741 adding 'xmipp3/protocols/protocol_movie_split_frames.py' 2026-03-01T18:02:11,742 adding 'xmipp3/protocols/protocol_multiple_fscs.py' 2026-03-01T18:02:11,745 adding 'xmipp3/protocols/protocol_multireference_alignability.py' 2026-03-01T18:02:11,747 adding 'xmipp3/protocols/protocol_normalize_strain.py' 2026-03-01T18:02:11,749 adding 'xmipp3/protocols/protocol_particle_pick.py' 2026-03-01T18:02:11,751 adding 'xmipp3/protocols/protocol_particle_pick_automatic.py' 2026-03-01T18:02:11,753 adding 'xmipp3/protocols/protocol_particle_pick_consensus.py' 2026-03-01T18:02:11,755 adding 'xmipp3/protocols/protocol_particle_pick_pairs.py' 2026-03-01T18:02:11,756 adding 'xmipp3/protocols/protocol_particle_pick_remove_duplicates.py' 2026-03-01T18:02:11,758 adding 'xmipp3/protocols/protocol_phantom_create.py' 2026-03-01T18:02:11,760 adding 'xmipp3/protocols/protocol_pick_noise.py' 2026-03-01T18:02:11,762 adding 'xmipp3/protocols/protocol_postProcessing_deepPostProcessing.py' 2026-03-01T18:02:11,765 adding 'xmipp3/protocols/protocol_preprocess_micrographs.py' 2026-03-01T18:02:11,767 adding 'xmipp3/protocols/protocol_random_conical_tilt.py' 2026-03-01T18:02:11,770 adding 'xmipp3/protocols/protocol_ransac.py' 2026-03-01T18:02:11,773 adding 'xmipp3/protocols/protocol_reconstruct_fourier.py' 2026-03-01T18:02:11,783 adding 'xmipp3/protocols/protocol_reconstruct_highres.py' 2026-03-01T18:02:11,786 adding 'xmipp3/protocols/protocol_reconstruct_significant.py' 2026-03-01T18:02:11,789 adding 'xmipp3/protocols/protocol_reconstruct_swarm.py' 2026-03-01T18:02:11,792 adding 'xmipp3/protocols/protocol_resolution3d.py' 2026-03-01T18:02:11,793 adding 'xmipp3/protocols/protocol_resolution_bfactor.py' 2026-03-01T18:02:11,796 adding 'xmipp3/protocols/protocol_resolution_deepres.py' 2026-03-01T18:02:11,798 adding 'xmipp3/protocols/protocol_resolution_directional.py' 2026-03-01T18:02:11,800 adding 'xmipp3/protocols/protocol_resolution_fso.py' 2026-03-01T18:02:11,802 adding 'xmipp3/protocols/protocol_resolution_monogenic_signal.py' 2026-03-01T18:02:11,803 adding 'xmipp3/protocols/protocol_rotate_volume.py' 2026-03-01T18:02:11,805 adding 'xmipp3/protocols/protocol_rotational_symmetry.py' 2026-03-01T18:02:11,815 adding 'xmipp3/protocols/protocol_screen_deepConsensus.py' 2026-03-01T18:02:11,818 adding 'xmipp3/protocols/protocol_screen_particles.py' 2026-03-01T18:02:11,820 adding 'xmipp3/protocols/protocol_shift_particles.py' 2026-03-01T18:02:11,822 adding 'xmipp3/protocols/protocol_shift_volume.py' 2026-03-01T18:02:11,824 adding 'xmipp3/protocols/protocol_simulate_ctf.py' 2026-03-01T18:02:11,825 adding 'xmipp3/protocols/protocol_structure_map.py' 2026-03-01T18:02:11,828 adding 'xmipp3/protocols/protocol_structure_map_zernike3d.py' 2026-03-01T18:02:11,830 adding 'xmipp3/protocols/protocol_subtract_projection.py' 2026-03-01T18:02:11,833 adding 'xmipp3/protocols/protocol_tilt_analysis.py' 2026-03-01T18:02:11,836 adding 'xmipp3/protocols/protocol_trigger_data.py' 2026-03-01T18:02:11,839 adding 'xmipp3/protocols/protocol_validate_fscq.py' 2026-03-01T18:02:11,841 adding 'xmipp3/protocols/protocol_validate_nontilt.py' 2026-03-01T18:02:11,844 adding 'xmipp3/protocols/protocol_validate_overfitting.py' 2026-03-01T18:02:11,846 adding 'xmipp3/protocols/protocol_volume_adjust_sub.py' 2026-03-01T18:02:11,848 adding 'xmipp3/protocols/protocol_volume_consensus.py' 2026-03-01T18:02:11,849 adding 'xmipp3/protocols/protocol_volume_deform_zernike3d.py' 2026-03-01T18:02:11,851 adding 'xmipp3/protocols/protocol_volume_local_adjust.py' 2026-03-01T18:02:11,853 adding 'xmipp3/protocols/protocol_volume_local_sharpening.py' 2026-03-01T18:02:11,855 adding 'xmipp3/protocols/protocol_volume_strain.py' 2026-03-01T18:02:11,856 adding 'xmipp3/protocols/protocol_write_testC.py' 2026-03-01T18:02:11,858 adding 'xmipp3/protocols/protocol_write_testP.py' 2026-03-01T18:02:11,860 adding 'xmipp3/protocols/protocol_preprocess/__init__.py' 2026-03-01T18:02:11,862 adding 'xmipp3/protocols/protocol_preprocess/geometrical_mask.py' 2026-03-01T18:02:11,864 adding 'xmipp3/protocols/protocol_preprocess/protocol_add_noise.py' 2026-03-01T18:02:11,865 adding 'xmipp3/protocols/protocol_preprocess/protocol_create_mask2d.py' 2026-03-01T18:02:11,867 adding 'xmipp3/protocols/protocol_preprocess/protocol_create_mask3d.py' 2026-03-01T18:02:11,870 adding 'xmipp3/protocols/protocol_preprocess/protocol_crop_resize.py' 2026-03-01T18:02:11,873 adding 'xmipp3/protocols/protocol_preprocess/protocol_filter.py' 2026-03-01T18:02:11,875 adding 'xmipp3/protocols/protocol_preprocess/protocol_image_operate.py' 2026-03-01T18:02:11,877 adding 'xmipp3/protocols/protocol_preprocess/protocol_mask.py' 2026-03-01T18:02:11,879 adding 'xmipp3/protocols/protocol_preprocess/protocol_movie_resize.py' 2026-03-01T18:02:11,883 adding 'xmipp3/protocols/protocol_preprocess/protocol_preprocess.py' 2026-03-01T18:02:11,885 adding 'xmipp3/protocols/protocol_preprocess/protocol_process.py' 2026-03-01T18:02:11,888 adding 'xmipp3/protocols/protocol_projmatch/__init__.py' 2026-03-01T18:02:11,891 adding 'xmipp3/protocols/protocol_projmatch/projmatch_form.py' 2026-03-01T18:02:11,894 adding 'xmipp3/protocols/protocol_projmatch/projmatch_initialize.py' 2026-03-01T18:02:11,898 adding 'xmipp3/protocols/protocol_projmatch/projmatch_steps.py' 2026-03-01T18:02:11,901 adding 'xmipp3/protocols/protocol_projmatch/protocol_projmatch.py' 2026-03-01T18:02:11,903 adding 'xmipp3/tests/__init__.py' 2026-03-01T18:02:11,907 adding 'xmipp3/tests/test_convert_xmipp.py' 2026-03-01T18:02:11,909 adding 'xmipp3/tests/test_protocol_angular_graph_consistency.py' 2026-03-01T18:02:11,910 adding 'xmipp3/tests/test_protocol_apply_transformation_matrix.py' 2026-03-01T18:02:11,912 adding 'xmipp3/tests/test_protocol_compare_angles.py' 2026-03-01T18:02:11,913 adding 'xmipp3/tests/test_protocol_consensus_classes3D.py' 2026-03-01T18:02:11,915 adding 'xmipp3/tests/test_protocol_ctf_consensus.py' 2026-03-01T18:02:11,918 adding 'xmipp3/tests/test_protocol_extract_asymmetric_unit.py' 2026-03-01T18:02:11,920 adding 'xmipp3/tests/test_protocol_likelihood.py' 2026-03-01T18:02:11,921 adding 'xmipp3/tests/test_protocol_monodir.py' 2026-03-01T18:02:11,923 adding 'xmipp3/tests/test_protocol_multiple_fsc.py' 2026-03-01T18:02:11,924 adding 'xmipp3/tests/test_protocol_multireference_alignability.py' 2026-03-01T18:02:11,926 adding 'xmipp3/tests/test_protocol_reconstruct_fourier.py' 2026-03-01T18:02:11,928 adding 'xmipp3/tests/test_protocol_screen_deepConsensus.py' 2026-03-01T18:02:11,929 adding 'xmipp3/tests/test_protocol_simulate_ctf.py' 2026-03-01T18:02:11,931 adding 'xmipp3/tests/test_protocol_split_frames.py' 2026-03-01T18:02:11,932 adding 'xmipp3/tests/test_protocol_validate_fscq.py' 2026-03-01T18:02:11,933 adding 'xmipp3/tests/test_protocol_validate_overfitting.py' 2026-03-01T18:02:11,935 adding 'xmipp3/tests/test_protocols_add_noise.py' 2026-03-01T18:02:11,936 adding 'xmipp3/tests/test_protocols_continuousflex.py' 2026-03-01T18:02:11,938 adding 'xmipp3/tests/test_protocols_deepVolPostprocessing.py' 2026-03-01T18:02:11,939 adding 'xmipp3/tests/test_protocols_deepcenter_predict.py' 2026-03-01T18:02:11,941 adding 'xmipp3/tests/test_protocols_deepres.py' 2026-03-01T18:02:11,942 adding 'xmipp3/tests/test_protocols_fso.py' 2026-03-01T18:02:11,944 adding 'xmipp3/tests/test_protocols_highres.py' 2026-03-01T18:02:11,945 adding 'xmipp3/tests/test_protocols_local_defocus.py' 2026-03-01T18:02:11,947 adding 'xmipp3/tests/test_protocols_localdeblur.py' 2026-03-01T18:02:11,949 adding 'xmipp3/tests/test_protocols_monores.py' 2026-03-01T18:02:11,950 adding 'xmipp3/tests/test_protocols_realignment_classes.py' 2026-03-01T18:02:11,957 adding 'xmipp3/tests/test_protocols_xmipp_2d.py' 2026-03-01T18:02:11,966 adding 'xmipp3/tests/test_protocols_xmipp_3d.py' 2026-03-01T18:02:11,971 adding 'xmipp3/tests/test_protocols_xmipp_mics.py' 2026-03-01T18:02:11,973 adding 'xmipp3/tests/test_protocols_xmipp_movie_resize.py' 2026-03-01T18:02:11,976 adding 'xmipp3/tests/test_protocols_xmipp_movies.py' 2026-03-01T18:02:11,978 adding 'xmipp3/tests/test_protocols_zernike3d.py' 2026-03-01T18:02:11,981 adding 'xmipp3/viewers/__init__.py' 2026-03-01T18:02:11,983 adding 'xmipp3/viewers/plotter.py' 2026-03-01T18:02:11,985 adding 'xmipp3/viewers/viewer.py' 2026-03-01T18:02:11,987 adding 'xmipp3/viewers/viewer_LL_matrix.py' 2026-03-01T18:02:11,989 adding 'xmipp3/viewers/viewer_analyze_local_ctf.py' 2026-03-01T18:02:11,990 adding 'xmipp3/viewers/viewer_apply_tilt_to_ctf.py' 2026-03-01T18:02:11,992 adding 'xmipp3/viewers/viewer_cl2d.py' 2026-03-01T18:02:11,993 adding 'xmipp3/viewers/viewer_cl2d_clustering.py' 2026-03-01T18:02:11,995 adding 'xmipp3/viewers/viewer_consensus_classes.py' 2026-03-01T18:02:11,997 adding 'xmipp3/viewers/viewer_ctf_consensus.py' 2026-03-01T18:02:11,998 adding 'xmipp3/viewers/viewer_deepEMHancer.py' 2026-03-01T18:02:12,000 adding 'xmipp3/viewers/viewer_deep_consensus.py' 2026-03-01T18:02:12,002 adding 'xmipp3/viewers/viewer_deep_micrograph_cleaner.py' 2026-03-01T18:02:12,003 adding 'xmipp3/viewers/viewer_dose_analysis.py' 2026-03-01T18:02:12,005 adding 'xmipp3/viewers/viewer_eliminate_empty_images.py' 2026-03-01T18:02:12,006 adding 'xmipp3/viewers/viewer_extract_asymmetric_unit.py' 2026-03-01T18:02:12,008 adding 'xmipp3/viewers/viewer_local_sharpening.py' 2026-03-01T18:02:12,010 adding 'xmipp3/viewers/viewer_ml2d.py' 2026-03-01T18:02:12,011 adding 'xmipp3/viewers/viewer_movie_alignment.py' 2026-03-01T18:02:12,013 adding 'xmipp3/viewers/viewer_normalize_strain.py' 2026-03-01T18:02:12,014 adding 'xmipp3/viewers/viewer_pdb_deform_zernike3d.py' 2026-03-01T18:02:12,018 adding 'xmipp3/viewers/viewer_projmatch.py' 2026-03-01T18:02:12,020 adding 'xmipp3/viewers/viewer_ransac.py' 2026-03-01T18:02:12,022 adding 'xmipp3/viewers/viewer_reconstruct_highres.py' 2026-03-01T18:02:12,024 adding 'xmipp3/viewers/viewer_resolution3d.py' 2026-03-01T18:02:12,025 adding 'xmipp3/viewers/viewer_resolution_bfactor.py' 2026-03-01T18:02:12,027 adding 'xmipp3/viewers/viewer_resolution_deepres.py' 2026-03-01T18:02:12,030 adding 'xmipp3/viewers/viewer_resolution_directional.py' 2026-03-01T18:02:12,032 adding 'xmipp3/viewers/viewer_resolution_fso.py' 2026-03-01T18:02:12,034 adding 'xmipp3/viewers/viewer_resolution_monogenic_signal.py' 2026-03-01T18:02:12,037 adding 'xmipp3/viewers/viewer_structure_map.py' 2026-03-01T18:02:12,039 adding 'xmipp3/viewers/viewer_subtract_projection.py' 2026-03-01T18:02:12,040 adding 'xmipp3/viewers/viewer_swarm.py' 2026-03-01T18:02:12,042 adding 'xmipp3/viewers/viewer_validate_fscq.py' 2026-03-01T18:02:12,044 adding 'xmipp3/viewers/viewer_validate_nontilt.py' 2026-03-01T18:02:12,045 adding 'xmipp3/viewers/viewer_validate_overfitting.py' 2026-03-01T18:02:12,046 adding 'xmipp3/viewers/viewer_volume_consensus.py' 2026-03-01T18:02:12,048 adding 'xmipp3/viewers/viewer_volume_deform_zernike3d.py' 2026-03-01T18:02:12,049 adding 'xmipp3/viewers/viewer_volume_strain.py' 2026-03-01T18:02:12,051 adding 'xmipp3/viewers/viewer_volume_subtraction.py' 2026-03-01T18:02:12,052 adding 'scipion_em_xmipp-28.0.1.dist-info/METADATA' 2026-03-01T18:02:12,053 adding 'scipion_em_xmipp-28.0.1.dist-info/WHEEL' 2026-03-01T18:02:12,054 adding 'scipion_em_xmipp-28.0.1.dist-info/entry_points.txt' 2026-03-01T18:02:12,055 adding 'scipion_em_xmipp-28.0.1.dist-info/top_level.txt' 2026-03-01T18:02:12,059 adding 'scipion_em_xmipp-28.0.1.dist-info/RECORD' 2026-03-01T18:02:12,081 removing build/bdist.linux-armv7l/wheel 2026-03-01T18:02:12,239 Building wheel for scipion-em-xmipp (pyproject.toml): finished with status 'done' 2026-03-01T18:02:12,285 Created wheel for scipion-em-xmipp: filename=scipion_em_xmipp-28.0.1-py3-none-any.whl size=1804965 sha256=5116c4bb32679b0cdfc412b9eb65b0d07ddc1456b3aa7553790a39d955825630 2026-03-01T18:02:12,286 Stored in directory: /tmp/pip-ephem-wheel-cache-34elyhoi/wheels/17/48/f2/f0f84d2c3a3b5c6d4debc7d72eae4e338f90a69cbaa7bc7618 2026-03-01T18:02:12,306 Successfully built scipion-em-xmipp 2026-03-01T18:02:12,353 Removed build tracker: '/tmp/pip-build-tracker-zlk0h134'