2026-03-04T19:42:38,176 Created temporary directory: /tmp/pip-ephem-wheel-cache-0zp2_3xa 2026-03-04T19:42:38,178 Created temporary directory: /tmp/pip-build-tracker-_nd9g5o7 2026-03-04T19:42:38,179 Initialized build tracking at /tmp/pip-build-tracker-_nd9g5o7 2026-03-04T19:42:38,179 Created build tracker: /tmp/pip-build-tracker-_nd9g5o7 2026-03-04T19:42:38,180 Entered build tracker: /tmp/pip-build-tracker-_nd9g5o7 2026-03-04T19:42:38,180 Created temporary directory: /tmp/pip-wheel-_gn37e75 2026-03-04T19:42:38,183 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-04T19:42:38,186 Created temporary directory: /tmp/pip-ephem-wheel-cache-8_s76e68 2026-03-04T19:42:38,207 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-04T19:42:38,211 2 location(s) to search for versions of pyboolnet: 2026-03-04T19:42:38,211 * https://pypi.org/simple/pyboolnet/ 2026-03-04T19:42:38,211 * https://www.piwheels.org/simple/pyboolnet/ 2026-03-04T19:42:38,212 Fetching project page and analyzing links: https://pypi.org/simple/pyboolnet/ 2026-03-04T19:42:38,213 Getting page https://pypi.org/simple/pyboolnet/ 2026-03-04T19:42:38,214 Found index url https://pypi.org/simple 2026-03-04T19:42:38,432 Fetched page https://pypi.org/simple/pyboolnet/ as application/vnd.pypi.simple.v1+json 2026-03-04T19:42:38,433 Skipping link: No binaries permitted for pyboolnet: https://files.pythonhosted.org/packages/e0/7c/dd17afd558a94fe210593249a8818ce89d69dca94b7bbb1380e403c892c0/pyboolnet-3.0.16-py3-none-any.whl (from https://pypi.org/simple/pyboolnet/) 2026-03-04T19:42:38,434 Found link https://files.pythonhosted.org/packages/7c/31/ac5cad0adfefc3082a10680363c11c76a225ba7e6b61813b771a7bf2bac8/pyboolnet-3.0.16.tar.gz (from https://pypi.org/simple/pyboolnet/), version: 3.0.16 2026-03-04T19:42:38,434 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyboolnet/ 2026-03-04T19:42:38,435 Getting page https://www.piwheels.org/simple/pyboolnet/ 2026-03-04T19:42:38,436 Found index url https://www.piwheels.org/simple 2026-03-04T19:42:38,592 Fetched page https://www.piwheels.org/simple/pyboolnet/ as text/html 2026-03-04T19:42:38,593 Skipping link: not a file: https://www.piwheels.org/simple/pyboolnet/ 2026-03-04T19:42:38,594 Skipping link: not a file: https://pypi.org/simple/pyboolnet/ 2026-03-04T19:42:38,612 Given no hashes to check 1 links for project 'pyboolnet': discarding no candidates 2026-03-04T19:42:38,630 Collecting pyboolnet==3.0.16 2026-03-04T19:42:38,632 Created temporary directory: /tmp/pip-unpack-3e5z1i40 2026-03-04T19:42:38,771 Downloading pyboolnet-3.0.16.tar.gz (18.4 MB) 2026-03-04T19:42:43,308 Added pyboolnet==3.0.16 from https://files.pythonhosted.org/packages/7c/31/ac5cad0adfefc3082a10680363c11c76a225ba7e6b61813b771a7bf2bac8/pyboolnet-3.0.16.tar.gz to build tracker '/tmp/pip-build-tracker-_nd9g5o7' 2026-03-04T19:42:43,309 Running setup.py (path:/tmp/pip-wheel-_gn37e75/pyboolnet_7485689bbea44067a0458a56e6e9bd19/setup.py) egg_info for package pyboolnet 2026-03-04T19:42:43,310 Created temporary directory: /tmp/pip-pip-egg-info-qek4i3sy 2026-03-04T19:42:43,311 Preparing metadata (setup.py): started 2026-03-04T19:42:43,312 Running command python setup.py egg_info 2026-03-04T19:42:43,826 Executable dot not found in system PATH 2026-03-04T19:42:43,828 Executable neato not found in system PATH 2026-03-04T19:42:43,829 Executable fdp not found in system PATH 2026-03-04T19:42:43,831 Executable sfdp not found in system PATH 2026-03-04T19:42:43,832 Executable circo not found in system PATH 2026-03-04T19:42:43,833 Executable twopi not found in system PATH 2026-03-04T19:42:43,834 Executable convert not found in system PATH 2026-03-04T19:42:44,242 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-03-04T19:42:44,243 !! 2026-03-04T19:42:44,244 ******************************************************************************** 2026-03-04T19:42:44,244 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-03-04T19:42:44,245 License :: OSI Approved :: GNU Library or Lesser General Public License (LGPL) 2026-03-04T19:42:44,246 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-04T19:42:44,247 ******************************************************************************** 2026-03-04T19:42:44,248 !! 2026-03-04T19:42:44,248 self._finalize_license_expression() 2026-03-04T19:42:44,273 INFO running egg_info 2026-03-04T19:42:44,301 INFO creating /tmp/pip-pip-egg-info-qek4i3sy/pyboolnet.egg-info 2026-03-04T19:42:44,302 INFO writing /tmp/pip-pip-egg-info-qek4i3sy/pyboolnet.egg-info/PKG-INFO 2026-03-04T19:42:44,305 INFO writing dependency_links to /tmp/pip-pip-egg-info-qek4i3sy/pyboolnet.egg-info/dependency_links.txt 2026-03-04T19:42:44,306 INFO writing entry points to /tmp/pip-pip-egg-info-qek4i3sy/pyboolnet.egg-info/entry_points.txt 2026-03-04T19:42:44,308 INFO writing requirements to /tmp/pip-pip-egg-info-qek4i3sy/pyboolnet.egg-info/requires.txt 2026-03-04T19:42:44,309 INFO writing top-level names to /tmp/pip-pip-egg-info-qek4i3sy/pyboolnet.egg-info/top_level.txt 2026-03-04T19:42:44,310 INFO writing manifest file '/tmp/pip-pip-egg-info-qek4i3sy/pyboolnet.egg-info/SOURCES.txt' 2026-03-04T19:42:44,556 INFO reading manifest file '/tmp/pip-pip-egg-info-qek4i3sy/pyboolnet.egg-info/SOURCES.txt' 2026-03-04T19:42:44,558 INFO reading manifest template 'MANIFEST.in' 2026-03-04T19:42:44,560 WARNING warning: no previously-included files matching '*~' found anywhere in distribution 2026-03-04T19:42:44,736 INFO writing manifest file '/tmp/pip-pip-egg-info-qek4i3sy/pyboolnet.egg-info/SOURCES.txt' 2026-03-04T19:42:44,843 Preparing metadata (setup.py): finished with status 'done' 2026-03-04T19:42:44,847 Source in /tmp/pip-wheel-_gn37e75/pyboolnet_7485689bbea44067a0458a56e6e9bd19 has version 3.0.16, which satisfies requirement pyboolnet==3.0.16 from https://files.pythonhosted.org/packages/7c/31/ac5cad0adfefc3082a10680363c11c76a225ba7e6b61813b771a7bf2bac8/pyboolnet-3.0.16.tar.gz 2026-03-04T19:42:44,848 Removed pyboolnet==3.0.16 from https://files.pythonhosted.org/packages/7c/31/ac5cad0adfefc3082a10680363c11c76a225ba7e6b61813b771a7bf2bac8/pyboolnet-3.0.16.tar.gz from build tracker '/tmp/pip-build-tracker-_nd9g5o7' 2026-03-04T19:42:44,853 Created temporary directory: /tmp/pip-unpack-tp4j68_h 2026-03-04T19:42:44,853 Building wheels for collected packages: pyboolnet 2026-03-04T19:42:44,858 Created temporary directory: /tmp/pip-wheel-g2a4hlh7 2026-03-04T19:42:44,858 Building wheel for pyboolnet (setup.py): started 2026-03-04T19:42:44,860 Destination directory: /tmp/pip-wheel-g2a4hlh7 2026-03-04T19:42:44,860 Running command python setup.py bdist_wheel 2026-03-04T19:42:45,351 Executable dot not found in system PATH 2026-03-04T19:42:45,351 Executable neato not found in system PATH 2026-03-04T19:42:45,351 Executable fdp not found in system PATH 2026-03-04T19:42:45,352 Executable sfdp not found in system PATH 2026-03-04T19:42:45,353 Executable circo not found in system PATH 2026-03-04T19:42:45,353 Executable twopi not found in system PATH 2026-03-04T19:42:45,354 Executable convert not found in system PATH 2026-03-04T19:42:45,713 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-03-04T19:42:45,713 !! 2026-03-04T19:42:45,714 ******************************************************************************** 2026-03-04T19:42:45,715 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-03-04T19:42:45,717 License :: OSI Approved :: GNU Library or Lesser General Public License (LGPL) 2026-03-04T19:42:45,718 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-04T19:42:45,718 ******************************************************************************** 2026-03-04T19:42:45,719 !! 2026-03-04T19:42:45,719 self._finalize_license_expression() 2026-03-04T19:42:45,720 INFO running bdist_wheel 2026-03-04T19:42:45,847 INFO running build 2026-03-04T19:42:45,847 INFO running build_py 2026-03-04T19:42:45,878 INFO creating build/lib/pyboolnet 2026-03-04T19:42:45,880 INFO copying pyboolnet/version.py -> build/lib/pyboolnet 2026-03-04T19:42:45,882 INFO copying pyboolnet/trap_spaces.py -> build/lib/pyboolnet 2026-03-04T19:42:45,885 INFO copying pyboolnet/state_space.py -> build/lib/pyboolnet 2026-03-04T19:42:45,888 INFO copying pyboolnet/helpers.py -> build/lib/pyboolnet 2026-03-04T19:42:45,890 INFO copying pyboolnet/interaction_graphs.py -> build/lib/pyboolnet 2026-03-04T19:42:45,892 INFO copying pyboolnet/phenotypes.py -> build/lib/pyboolnet 2026-03-04T19:42:45,895 INFO copying pyboolnet/file_exchange.py -> build/lib/pyboolnet 2026-03-04T19:42:45,897 INFO copying pyboolnet/temporal_logic.py -> build/lib/pyboolnet 2026-03-04T19:42:45,900 INFO copying pyboolnet/model_checking.py -> build/lib/pyboolnet 2026-03-04T19:42:45,902 INFO copying pyboolnet/boolean_normal_forms.py -> build/lib/pyboolnet 2026-03-04T19:42:45,904 INFO copying pyboolnet/commitment_diagrams.py -> build/lib/pyboolnet 2026-03-04T19:42:45,907 INFO copying pyboolnet/network_generators.py -> build/lib/pyboolnet 2026-03-04T19:42:45,909 INFO copying pyboolnet/state_transition_graphs.py -> build/lib/pyboolnet 2026-03-04T19:42:45,912 INFO copying pyboolnet/basins_of_attraction.py -> build/lib/pyboolnet 2026-03-04T19:42:45,914 INFO copying pyboolnet/digraphs.py -> build/lib/pyboolnet 2026-03-04T19:42:45,917 INFO copying pyboolnet/attractors.py -> build/lib/pyboolnet 2026-03-04T19:42:45,919 INFO copying pyboolnet/__init__.py -> build/lib/pyboolnet 2026-03-04T19:42:45,921 INFO copying pyboolnet/boolean_logic.py -> build/lib/pyboolnet 2026-03-04T19:42:45,923 INFO copying pyboolnet/prime_implicants.py -> build/lib/pyboolnet 2026-03-04T19:42:45,927 INFO creating build/lib/tests 2026-03-04T19:42:45,928 INFO copying tests/test_state_transition_graphs.py -> build/lib/tests 2026-03-04T19:42:45,930 INFO copying tests/helpers.py -> build/lib/tests 2026-03-04T19:42:45,932 INFO copying tests/test_percolation.py -> build/lib/tests 2026-03-04T19:42:45,934 INFO copying tests/test_phenotypes.py -> build/lib/tests 2026-03-04T19:42:45,936 INFO copying tests/test_helpers.py -> build/lib/tests 2026-03-04T19:42:45,938 INFO copying tests/test_commitment_diagram.py -> build/lib/tests 2026-03-04T19:42:45,940 INFO copying tests/test_external_bnet2primes.py -> build/lib/tests 2026-03-04T19:42:45,942 INFO copying tests/test_boolean_normal_forms.py -> build/lib/tests 2026-03-04T19:42:45,943 INFO copying tests/test_trap_spaces.py -> build/lib/tests 2026-03-04T19:42:45,946 INFO copying tests/test_attractors.py -> build/lib/tests 2026-03-04T19:42:45,948 INFO copying tests/test_model_checking.py -> build/lib/tests 2026-03-04T19:42:45,950 INFO copying tests/test_file_exchange.py -> build/lib/tests 2026-03-04T19:42:45,952 INFO copying tests/test_boolean_logic.py -> build/lib/tests 2026-03-04T19:42:45,954 INFO copying tests/test_state_space.py -> build/lib/tests 2026-03-04T19:42:45,956 INFO copying tests/test_basins_of_attraction.py -> build/lib/tests 2026-03-04T19:42:45,958 INFO copying tests/test_temporal_queries.py -> build/lib/tests 2026-03-04T19:42:45,960 INFO copying tests/test_prime_implicants.py -> build/lib/tests 2026-03-04T19:42:45,962 INFO copying tests/__init__.py -> build/lib/tests 2026-03-04T19:42:45,963 INFO copying tests/test_network_generators.py -> build/lib/tests 2026-03-04T19:42:45,965 INFO copying tests/test_interaction_graphs.py -> build/lib/tests 2026-03-04T19:42:45,968 INFO creating build/lib/pyboolnet/repository 2026-03-04T19:42:45,969 INFO copying pyboolnet/repository/jobs.py -> build/lib/pyboolnet/repository 2026-03-04T19:42:45,971 INFO copying pyboolnet/repository/__init__.py -> build/lib/pyboolnet/repository 2026-03-04T19:42:45,974 INFO creating build/lib/pyboolnet/external 2026-03-04T19:42:45,975 INFO copying pyboolnet/external/potassco.py -> build/lib/pyboolnet/external 2026-03-04T19:42:45,977 INFO copying pyboolnet/external/bnet2primes.py -> build/lib/pyboolnet/external 2026-03-04T19:42:45,979 INFO copying pyboolnet/external/__init__.py -> build/lib/pyboolnet/external 2026-03-04T19:42:45,982 INFO creating build/lib/pyboolnet/cli 2026-03-04T19:42:45,982 INFO copying pyboolnet/cli/helpers.py -> build/lib/pyboolnet/cli 2026-03-04T19:42:45,984 INFO copying pyboolnet/cli/main.py -> build/lib/pyboolnet/cli 2026-03-04T19:42:45,986 INFO copying pyboolnet/cli/check_dependencies.py -> build/lib/pyboolnet/cli 2026-03-04T19:42:45,988 INFO copying pyboolnet/cli/__init__.py -> build/lib/pyboolnet/cli 2026-03-04T19:42:45,990 INFO creating build/lib/pyboolnet/cli/commands 2026-03-04T19:42:45,991 INFO copying pyboolnet/cli/commands/trap_spaces.py -> build/lib/pyboolnet/cli/commands 2026-03-04T19:42:45,993 INFO copying pyboolnet/cli/commands/check_dependencies.py -> build/lib/pyboolnet/cli/commands 2026-03-04T19:42:45,995 INFO copying pyboolnet/cli/commands/__init__.py -> build/lib/pyboolnet/cli/commands 2026-03-04T19:42:45,997 INFO creating build/lib/tests/command_line_tool 2026-03-04T19:42:45,998 INFO copying tests/command_line_tool/trap_spaces.py -> build/lib/tests/command_line_tool 2026-03-04T19:42:45,999 INFO copying tests/command_line_tool/__init__.py -> build/lib/tests/command_line_tool 2026-03-04T19:42:46,001 INFO running egg_info 2026-03-04T19:42:46,028 INFO writing pyboolnet.egg-info/PKG-INFO 2026-03-04T19:42:46,031 INFO writing dependency_links to pyboolnet.egg-info/dependency_links.txt 2026-03-04T19:42:46,033 INFO writing entry points to pyboolnet.egg-info/entry_points.txt 2026-03-04T19:42:46,034 INFO writing requirements to pyboolnet.egg-info/requires.txt 2026-03-04T19:42:46,035 INFO writing top-level names to pyboolnet.egg-info/top_level.txt 2026-03-04T19:42:46,113 INFO reading manifest file 'pyboolnet.egg-info/SOURCES.txt' 2026-03-04T19:42:46,130 INFO reading manifest template 'MANIFEST.in' 2026-03-04T19:42:46,133 WARNING warning: no previously-included files matching '*~' found anywhere in distribution 2026-03-04T19:42:46,270 INFO writing manifest file 'pyboolnet.egg-info/SOURCES.txt' 2026-03-04T19:42:46,273 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyboolnet.binaries.conda' is absent from the `packages` configuration. 2026-03-04T19:42:46,274 !! 2026-03-04T19:42:46,275 ******************************************************************************** 2026-03-04T19:42:46,276 ############################ 2026-03-04T19:42:46,276 # Package would be ignored # 2026-03-04T19:42:46,277 ############################ 2026-03-04T19:42:46,277 Python recognizes 'pyboolnet.binaries.conda' as an importable package[^1], 2026-03-04T19:42:46,278 but it is absent from setuptools' `packages` configuration. 2026-03-04T19:42:46,279 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-04T19:42:46,280 package, please make sure that 'pyboolnet.binaries.conda' is explicitly added 2026-03-04T19:42:46,280 to the `packages` configuration field. 2026-03-04T19:42:46,281 Alternatively, you can also rely on setuptools' discovery methods 2026-03-04T19:42:46,282 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-04T19:42:46,283 instead of `find_packages(...)`/`find:`). 2026-03-04T19:42:46,284 You can read more about "package discovery" on setuptools documentation page: 2026-03-04T19:42:46,285 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-04T19:42:46,286 If you don't want 'pyboolnet.binaries.conda' to be distributed and are 2026-03-04T19:42:46,286 already explicitly excluding 'pyboolnet.binaries.conda' via 2026-03-04T19:42:46,286 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-04T19:42:46,287 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-04T19:42:46,287 combination with a more fine grained `package-data` configuration. 2026-03-04T19:42:46,288 You can read more about "package data files" on setuptools documentation page: 2026-03-04T19:42:46,289 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-04T19:42:46,290 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-04T19:42:46,291 even if it does not contain any `.py` files. 2026-03-04T19:42:46,291 On the other hand, currently there is no concept of package data 2026-03-04T19:42:46,291 directory, all directories are treated like packages. 2026-03-04T19:42:46,292 ******************************************************************************** 2026-03-04T19:42:46,292 !! 2026-03-04T19:42:46,293 check.warn(importable) 2026-03-04T19:42:46,293 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyboolnet.binaries.linux64' is absent from the `packages` configuration. 2026-03-04T19:42:46,294 !! 2026-03-04T19:42:46,295 ******************************************************************************** 2026-03-04T19:42:46,295 ############################ 2026-03-04T19:42:46,296 # Package would be ignored # 2026-03-04T19:42:46,297 ############################ 2026-03-04T19:42:46,297 Python recognizes 'pyboolnet.binaries.linux64' as an importable package[^1], 2026-03-04T19:42:46,298 but it is absent from setuptools' `packages` configuration. 2026-03-04T19:42:46,299 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-04T19:42:46,299 package, please make sure that 'pyboolnet.binaries.linux64' is explicitly added 2026-03-04T19:42:46,300 to the `packages` configuration field. 2026-03-04T19:42:46,300 Alternatively, you can also rely on setuptools' discovery methods 2026-03-04T19:42:46,301 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-04T19:42:46,301 instead of `find_packages(...)`/`find:`). 2026-03-04T19:42:46,303 You can read more about "package discovery" on setuptools documentation page: 2026-03-04T19:42:46,303 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-04T19:42:46,304 If you don't want 'pyboolnet.binaries.linux64' to be distributed and are 2026-03-04T19:42:46,305 already explicitly excluding 'pyboolnet.binaries.linux64' via 2026-03-04T19:42:46,305 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-04T19:42:46,306 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-04T19:42:46,306 combination with a more fine grained `package-data` configuration. 2026-03-04T19:42:46,307 You can read more about "package data files" on setuptools documentation page: 2026-03-04T19:42:46,308 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-04T19:42:46,310 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-04T19:42:46,310 even if it does not contain any `.py` files. 2026-03-04T19:42:46,311 On the other hand, currently there is no concept of package data 2026-03-04T19:42:46,311 directory, all directories are treated like packages. 2026-03-04T19:42:46,312 ******************************************************************************** 2026-03-04T19:42:46,313 !! 2026-03-04T19:42:46,313 check.warn(importable) 2026-03-04T19:42:46,313 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyboolnet.binaries.linux64.BNetToPrime' is absent from the `packages` configuration. 2026-03-04T19:42:46,314 !! 2026-03-04T19:42:46,314 ******************************************************************************** 2026-03-04T19:42:46,315 ############################ 2026-03-04T19:42:46,315 # Package would be ignored # 2026-03-04T19:42:46,316 ############################ 2026-03-04T19:42:46,316 Python recognizes 'pyboolnet.binaries.linux64.BNetToPrime' as an importable package[^1], 2026-03-04T19:42:46,316 but it is absent from setuptools' `packages` configuration. 2026-03-04T19:42:46,317 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-04T19:42:46,317 package, please make sure that 'pyboolnet.binaries.linux64.BNetToPrime' is explicitly added 2026-03-04T19:42:46,318 to the `packages` configuration field. 2026-03-04T19:42:46,318 Alternatively, you can also rely on setuptools' discovery methods 2026-03-04T19:42:46,319 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-04T19:42:46,319 instead of `find_packages(...)`/`find:`). 2026-03-04T19:42:46,320 You can read more about "package discovery" on setuptools documentation page: 2026-03-04T19:42:46,321 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-04T19:42:46,322 If you don't want 'pyboolnet.binaries.linux64.BNetToPrime' to be distributed and are 2026-03-04T19:42:46,322 already explicitly excluding 'pyboolnet.binaries.linux64.BNetToPrime' via 2026-03-04T19:42:46,323 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-04T19:42:46,323 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-04T19:42:46,324 combination with a more fine grained `package-data` configuration. 2026-03-04T19:42:46,324 You can read more about "package data files" on setuptools documentation page: 2026-03-04T19:42:46,325 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-04T19:42:46,327 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-04T19:42:46,327 even if it does not contain any `.py` files. 2026-03-04T19:42:46,328 On the other hand, currently there is no concept of package data 2026-03-04T19:42:46,328 directory, all directories are treated like packages. 2026-03-04T19:42:46,329 ******************************************************************************** 2026-03-04T19:42:46,329 !! 2026-03-04T19:42:46,330 check.warn(importable) 2026-03-04T19:42:46,330 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyboolnet.binaries.linux64.eqntott' is absent from the `packages` configuration. 2026-03-04T19:42:46,331 !! 2026-03-04T19:42:46,332 ******************************************************************************** 2026-03-04T19:42:46,332 ############################ 2026-03-04T19:42:46,333 # Package would be ignored # 2026-03-04T19:42:46,333 ############################ 2026-03-04T19:42:46,334 Python recognizes 'pyboolnet.binaries.linux64.eqntott' as an importable package[^1], 2026-03-04T19:42:46,334 but it is absent from setuptools' `packages` configuration. 2026-03-04T19:42:46,335 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-04T19:42:46,336 package, please make sure that 'pyboolnet.binaries.linux64.eqntott' is explicitly added 2026-03-04T19:42:46,336 to the `packages` configuration field. 2026-03-04T19:42:46,337 Alternatively, you can also rely on setuptools' discovery methods 2026-03-04T19:42:46,338 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-04T19:42:46,338 instead of `find_packages(...)`/`find:`). 2026-03-04T19:42:46,339 You can read more about "package discovery" on setuptools documentation page: 2026-03-04T19:42:46,339 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-04T19:42:46,340 If you don't want 'pyboolnet.binaries.linux64.eqntott' to be distributed and are 2026-03-04T19:42:46,340 already explicitly excluding 'pyboolnet.binaries.linux64.eqntott' via 2026-03-04T19:42:46,341 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-04T19:42:46,341 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-04T19:42:46,342 combination with a more fine grained `package-data` configuration. 2026-03-04T19:42:46,342 You can read more about "package data files" on setuptools documentation page: 2026-03-04T19:42:46,343 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-04T19:42:46,344 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-04T19:42:46,345 even if it does not contain any `.py` files. 2026-03-04T19:42:46,345 On the other hand, currently there is no concept of package data 2026-03-04T19:42:46,345 directory, all directories are treated like packages. 2026-03-04T19:42:46,346 ******************************************************************************** 2026-03-04T19:42:46,346 !! 2026-03-04T19:42:46,347 check.warn(importable) 2026-03-04T19:42:46,347 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyboolnet.binaries.linux64.espresso' is absent from the `packages` configuration. 2026-03-04T19:42:46,348 !! 2026-03-04T19:42:46,349 ******************************************************************************** 2026-03-04T19:42:46,349 ############################ 2026-03-04T19:42:46,350 # Package would be ignored # 2026-03-04T19:42:46,351 ############################ 2026-03-04T19:42:46,351 Python recognizes 'pyboolnet.binaries.linux64.espresso' as an importable package[^1], 2026-03-04T19:42:46,351 but it is absent from setuptools' `packages` configuration. 2026-03-04T19:42:46,352 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-04T19:42:46,353 package, please make sure that 'pyboolnet.binaries.linux64.espresso' is explicitly added 2026-03-04T19:42:46,353 to the `packages` configuration field. 2026-03-04T19:42:46,354 Alternatively, you can also rely on setuptools' discovery methods 2026-03-04T19:42:46,355 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-04T19:42:46,355 instead of `find_packages(...)`/`find:`). 2026-03-04T19:42:46,356 You can read more about "package discovery" on setuptools documentation page: 2026-03-04T19:42:46,357 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-04T19:42:46,358 If you don't want 'pyboolnet.binaries.linux64.espresso' to be distributed and are 2026-03-04T19:42:46,359 already explicitly excluding 'pyboolnet.binaries.linux64.espresso' via 2026-03-04T19:42:46,359 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-04T19:42:46,360 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-04T19:42:46,360 combination with a more fine grained `package-data` configuration. 2026-03-04T19:42:46,362 You can read more about "package data files" on setuptools documentation page: 2026-03-04T19:42:46,362 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-04T19:42:46,363 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-04T19:42:46,364 even if it does not contain any `.py` files. 2026-03-04T19:42:46,364 On the other hand, currently there is no concept of package data 2026-03-04T19:42:46,365 directory, all directories are treated like packages. 2026-03-04T19:42:46,365 ******************************************************************************** 2026-03-04T19:42:46,366 !! 2026-03-04T19:42:46,367 check.warn(importable) 2026-03-04T19:42:46,367 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyboolnet.binaries.mac64' is absent from the `packages` configuration. 2026-03-04T19:42:46,367 !! 2026-03-04T19:42:46,368 ******************************************************************************** 2026-03-04T19:42:46,369 ############################ 2026-03-04T19:42:46,369 # Package would be ignored # 2026-03-04T19:42:46,369 ############################ 2026-03-04T19:42:46,370 Python recognizes 'pyboolnet.binaries.mac64' as an importable package[^1], 2026-03-04T19:42:46,370 but it is absent from setuptools' `packages` configuration. 2026-03-04T19:42:46,371 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-04T19:42:46,371 package, please make sure that 'pyboolnet.binaries.mac64' is explicitly added 2026-03-04T19:42:46,372 to the `packages` configuration field. 2026-03-04T19:42:46,372 Alternatively, you can also rely on setuptools' discovery methods 2026-03-04T19:42:46,373 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-04T19:42:46,373 instead of `find_packages(...)`/`find:`). 2026-03-04T19:42:46,374 You can read more about "package discovery" on setuptools documentation page: 2026-03-04T19:42:46,375 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-04T19:42:46,376 If you don't want 'pyboolnet.binaries.mac64' to be distributed and are 2026-03-04T19:42:46,376 already explicitly excluding 'pyboolnet.binaries.mac64' via 2026-03-04T19:42:46,377 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-04T19:42:46,378 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-04T19:42:46,378 combination with a more fine grained `package-data` configuration. 2026-03-04T19:42:46,379 You can read more about "package data files" on setuptools documentation page: 2026-03-04T19:42:46,380 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-04T19:42:46,381 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-04T19:42:46,382 even if it does not contain any `.py` files. 2026-03-04T19:42:46,382 On the other hand, currently there is no concept of package data 2026-03-04T19:42:46,383 directory, all directories are treated like packages. 2026-03-04T19:42:46,383 ******************************************************************************** 2026-03-04T19:42:46,384 !! 2026-03-04T19:42:46,385 check.warn(importable) 2026-03-04T19:42:46,385 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyboolnet.binaries.mac64.BNetToPrime' is absent from the `packages` configuration. 2026-03-04T19:42:46,386 !! 2026-03-04T19:42:46,387 ******************************************************************************** 2026-03-04T19:42:46,388 ############################ 2026-03-04T19:42:46,388 # Package would be ignored # 2026-03-04T19:42:46,389 ############################ 2026-03-04T19:42:46,390 Python recognizes 'pyboolnet.binaries.mac64.BNetToPrime' as an importable package[^1], 2026-03-04T19:42:46,390 but it is absent from setuptools' `packages` configuration. 2026-03-04T19:42:46,391 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-04T19:42:46,391 package, please make sure that 'pyboolnet.binaries.mac64.BNetToPrime' is explicitly added 2026-03-04T19:42:46,392 to the `packages` configuration field. 2026-03-04T19:42:46,392 Alternatively, you can also rely on setuptools' discovery methods 2026-03-04T19:42:46,393 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-04T19:42:46,393 instead of `find_packages(...)`/`find:`). 2026-03-04T19:42:46,394 You can read more about "package discovery" on setuptools documentation page: 2026-03-04T19:42:46,395 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-04T19:42:46,396 If you don't want 'pyboolnet.binaries.mac64.BNetToPrime' to be distributed and are 2026-03-04T19:42:46,396 already explicitly excluding 'pyboolnet.binaries.mac64.BNetToPrime' via 2026-03-04T19:42:46,396 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-04T19:42:46,397 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-04T19:42:46,397 combination with a more fine grained `package-data` configuration. 2026-03-04T19:42:46,398 You can read more about "package data files" on setuptools documentation page: 2026-03-04T19:42:46,399 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-04T19:42:46,400 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-04T19:42:46,401 even if it does not contain any `.py` files. 2026-03-04T19:42:46,401 On the other hand, currently there is no concept of package data 2026-03-04T19:42:46,402 directory, all directories are treated like packages. 2026-03-04T19:42:46,402 ******************************************************************************** 2026-03-04T19:42:46,403 !! 2026-03-04T19:42:46,404 check.warn(importable) 2026-03-04T19:42:46,404 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyboolnet.binaries.mac64.eqntott' is absent from the `packages` configuration. 2026-03-04T19:42:46,405 !! 2026-03-04T19:42:46,406 ******************************************************************************** 2026-03-04T19:42:46,407 ############################ 2026-03-04T19:42:46,407 # Package would be ignored # 2026-03-04T19:42:46,408 ############################ 2026-03-04T19:42:46,408 Python recognizes 'pyboolnet.binaries.mac64.eqntott' as an importable package[^1], 2026-03-04T19:42:46,409 but it is absent from setuptools' `packages` configuration. 2026-03-04T19:42:46,410 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-04T19:42:46,410 package, please make sure that 'pyboolnet.binaries.mac64.eqntott' is explicitly added 2026-03-04T19:42:46,411 to the `packages` configuration field. 2026-03-04T19:42:46,412 Alternatively, you can also rely on setuptools' discovery methods 2026-03-04T19:42:46,412 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-04T19:42:46,413 instead of `find_packages(...)`/`find:`). 2026-03-04T19:42:46,414 You can read more about "package discovery" on setuptools documentation page: 2026-03-04T19:42:46,415 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-04T19:42:46,416 If you don't want 'pyboolnet.binaries.mac64.eqntott' to be distributed and are 2026-03-04T19:42:46,417 already explicitly excluding 'pyboolnet.binaries.mac64.eqntott' via 2026-03-04T19:42:46,418 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-04T19:42:46,418 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-04T19:42:46,418 combination with a more fine grained `package-data` configuration. 2026-03-04T19:42:46,419 You can read more about "package data files" on setuptools documentation page: 2026-03-04T19:42:46,420 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-04T19:42:46,421 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-04T19:42:46,421 even if it does not contain any `.py` files. 2026-03-04T19:42:46,422 On the other hand, currently there is no concept of package data 2026-03-04T19:42:46,422 directory, all directories are treated like packages. 2026-03-04T19:42:46,422 ******************************************************************************** 2026-03-04T19:42:46,423 !! 2026-03-04T19:42:46,424 check.warn(importable) 2026-03-04T19:42:46,424 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyboolnet.binaries.mac64.espresso' is absent from the `packages` configuration. 2026-03-04T19:42:46,424 !! 2026-03-04T19:42:46,425 ******************************************************************************** 2026-03-04T19:42:46,426 ############################ 2026-03-04T19:42:46,426 # Package would be ignored # 2026-03-04T19:42:46,427 ############################ 2026-03-04T19:42:46,427 Python recognizes 'pyboolnet.binaries.mac64.espresso' as an importable package[^1], 2026-03-04T19:42:46,427 but it is absent from setuptools' `packages` configuration. 2026-03-04T19:42:46,428 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-04T19:42:46,429 package, please make sure that 'pyboolnet.binaries.mac64.espresso' is explicitly added 2026-03-04T19:42:46,430 to the `packages` configuration field. 2026-03-04T19:42:46,431 Alternatively, you can also rely on setuptools' discovery methods 2026-03-04T19:42:46,431 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-04T19:42:46,432 instead of `find_packages(...)`/`find:`). 2026-03-04T19:42:46,433 You can read more about "package discovery" on setuptools documentation page: 2026-03-04T19:42:46,434 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-04T19:42:46,435 If you don't want 'pyboolnet.binaries.mac64.espresso' to be distributed and are 2026-03-04T19:42:46,436 already explicitly excluding 'pyboolnet.binaries.mac64.espresso' via 2026-03-04T19:42:46,436 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-04T19:42:46,437 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-04T19:42:46,437 combination with a more fine grained `package-data` configuration. 2026-03-04T19:42:46,438 You can read more about "package data files" on setuptools documentation page: 2026-03-04T19:42:46,439 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-04T19:42:46,441 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-04T19:42:46,442 even if it does not contain any `.py` files. 2026-03-04T19:42:46,442 On the other hand, currently there is no concept of package data 2026-03-04T19:42:46,443 directory, all directories are treated like packages. 2026-03-04T19:42:46,443 ******************************************************************************** 2026-03-04T19:42:46,445 !! 2026-03-04T19:42:46,445 check.warn(importable) 2026-03-04T19:42:46,445 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyboolnet.binaries.win64' is absent from the `packages` configuration. 2026-03-04T19:42:46,446 !! 2026-03-04T19:42:46,446 ******************************************************************************** 2026-03-04T19:42:46,447 ############################ 2026-03-04T19:42:46,447 # Package would be ignored # 2026-03-04T19:42:46,447 ############################ 2026-03-04T19:42:46,448 Python recognizes 'pyboolnet.binaries.win64' as an importable package[^1], 2026-03-04T19:42:46,448 but it is absent from setuptools' `packages` configuration. 2026-03-04T19:42:46,449 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-04T19:42:46,449 package, please make sure that 'pyboolnet.binaries.win64' is explicitly added 2026-03-04T19:42:46,450 to the `packages` configuration field. 2026-03-04T19:42:46,450 Alternatively, you can also rely on setuptools' discovery methods 2026-03-04T19:42:46,451 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-04T19:42:46,451 instead of `find_packages(...)`/`find:`). 2026-03-04T19:42:46,452 You can read more about "package discovery" on setuptools documentation page: 2026-03-04T19:42:46,453 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-04T19:42:46,454 If you don't want 'pyboolnet.binaries.win64' to be distributed and are 2026-03-04T19:42:46,454 already explicitly excluding 'pyboolnet.binaries.win64' via 2026-03-04T19:42:46,455 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-04T19:42:46,455 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-04T19:42:46,456 combination with a more fine grained `package-data` configuration. 2026-03-04T19:42:46,456 You can read more about "package data files" on setuptools documentation page: 2026-03-04T19:42:46,457 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-04T19:42:46,459 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-04T19:42:46,460 even if it does not contain any `.py` files. 2026-03-04T19:42:46,460 On the other hand, currently there is no concept of package data 2026-03-04T19:42:46,460 directory, all directories are treated like packages. 2026-03-04T19:42:46,461 ******************************************************************************** 2026-03-04T19:42:46,462 !! 2026-03-04T19:42:46,463 check.warn(importable) 2026-03-04T19:42:46,463 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyboolnet.binaries.win64.BNetToPrime' is absent from the `packages` configuration. 2026-03-04T19:42:46,464 !! 2026-03-04T19:42:46,465 ******************************************************************************** 2026-03-04T19:42:46,465 ############################ 2026-03-04T19:42:46,466 # Package would be ignored # 2026-03-04T19:42:46,466 ############################ 2026-03-04T19:42:46,467 Python recognizes 'pyboolnet.binaries.win64.BNetToPrime' as an importable package[^1], 2026-03-04T19:42:46,467 but it is absent from setuptools' `packages` configuration. 2026-03-04T19:42:46,468 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-04T19:42:46,469 package, please make sure that 'pyboolnet.binaries.win64.BNetToPrime' is explicitly added 2026-03-04T19:42:46,469 to the `packages` configuration field. 2026-03-04T19:42:46,470 Alternatively, you can also rely on setuptools' discovery methods 2026-03-04T19:42:46,471 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-04T19:42:46,472 instead of `find_packages(...)`/`find:`). 2026-03-04T19:42:46,473 You can read more about "package discovery" on setuptools documentation page: 2026-03-04T19:42:46,473 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-04T19:42:46,474 If you don't want 'pyboolnet.binaries.win64.BNetToPrime' to be distributed and are 2026-03-04T19:42:46,474 already explicitly excluding 'pyboolnet.binaries.win64.BNetToPrime' via 2026-03-04T19:42:46,475 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-04T19:42:46,475 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-04T19:42:46,476 combination with a more fine grained `package-data` configuration. 2026-03-04T19:42:46,476 You can read more about "package data files" on setuptools documentation page: 2026-03-04T19:42:46,477 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-04T19:42:46,478 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-04T19:42:46,479 even if it does not contain any `.py` files. 2026-03-04T19:42:46,479 On the other hand, currently there is no concept of package data 2026-03-04T19:42:46,480 directory, all directories are treated like packages. 2026-03-04T19:42:46,480 ******************************************************************************** 2026-03-04T19:42:46,481 !! 2026-03-04T19:42:46,481 check.warn(importable) 2026-03-04T19:42:46,482 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyboolnet.binaries.win64.eqntott' is absent from the `packages` configuration. 2026-03-04T19:42:46,482 !! 2026-03-04T19:42:46,483 ******************************************************************************** 2026-03-04T19:42:46,484 ############################ 2026-03-04T19:42:46,484 # Package would be ignored # 2026-03-04T19:42:46,485 ############################ 2026-03-04T19:42:46,485 Python recognizes 'pyboolnet.binaries.win64.eqntott' as an importable package[^1], 2026-03-04T19:42:46,486 but it is absent from setuptools' `packages` configuration. 2026-03-04T19:42:46,487 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-04T19:42:46,487 package, please make sure that 'pyboolnet.binaries.win64.eqntott' is explicitly added 2026-03-04T19:42:46,488 to the `packages` configuration field. 2026-03-04T19:42:46,489 Alternatively, you can also rely on setuptools' discovery methods 2026-03-04T19:42:46,489 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-04T19:42:46,490 instead of `find_packages(...)`/`find:`). 2026-03-04T19:42:46,491 You can read more about "package discovery" on setuptools documentation page: 2026-03-04T19:42:46,492 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-04T19:42:46,493 If you don't want 'pyboolnet.binaries.win64.eqntott' to be distributed and are 2026-03-04T19:42:46,493 already explicitly excluding 'pyboolnet.binaries.win64.eqntott' via 2026-03-04T19:42:46,494 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-04T19:42:46,494 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-04T19:42:46,495 combination with a more fine grained `package-data` configuration. 2026-03-04T19:42:46,496 You can read more about "package data files" on setuptools documentation page: 2026-03-04T19:42:46,497 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-04T19:42:46,498 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-04T19:42:46,499 even if it does not contain any `.py` files. 2026-03-04T19:42:46,500 On the other hand, currently there is no concept of package data 2026-03-04T19:42:46,500 directory, all directories are treated like packages. 2026-03-04T19:42:46,500 ******************************************************************************** 2026-03-04T19:42:46,501 !! 2026-03-04T19:42:46,501 check.warn(importable) 2026-03-04T19:42:46,502 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyboolnet.binaries.win64.espresso' is absent from the `packages` configuration. 2026-03-04T19:42:46,502 !! 2026-03-04T19:42:46,503 ******************************************************************************** 2026-03-04T19:42:46,503 ############################ 2026-03-04T19:42:46,504 # Package would be ignored # 2026-03-04T19:42:46,504 ############################ 2026-03-04T19:42:46,505 Python recognizes 'pyboolnet.binaries.win64.espresso' as an importable package[^1], 2026-03-04T19:42:46,505 but it is absent from setuptools' `packages` configuration. 2026-03-04T19:42:46,506 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-04T19:42:46,506 package, please make sure that 'pyboolnet.binaries.win64.espresso' is explicitly added 2026-03-04T19:42:46,507 to the `packages` configuration field. 2026-03-04T19:42:46,507 Alternatively, you can also rely on setuptools' discovery methods 2026-03-04T19:42:46,508 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-04T19:42:46,508 instead of `find_packages(...)`/`find:`). 2026-03-04T19:42:46,509 You can read more about "package discovery" on setuptools documentation page: 2026-03-04T19:42:46,510 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-04T19:42:46,511 If you don't want 'pyboolnet.binaries.win64.espresso' to be distributed and are 2026-03-04T19:42:46,512 already explicitly excluding 'pyboolnet.binaries.win64.espresso' via 2026-03-04T19:42:46,512 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-04T19:42:46,513 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-04T19:42:46,513 combination with a more fine grained `package-data` configuration. 2026-03-04T19:42:46,514 You can read more about "package data files" on setuptools documentation page: 2026-03-04T19:42:46,516 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-04T19:42:46,517 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-04T19:42:46,517 even if it does not contain any `.py` files. 2026-03-04T19:42:46,518 On the other hand, currently there is no concept of package data 2026-03-04T19:42:46,518 directory, all directories are treated like packages. 2026-03-04T19:42:46,519 ******************************************************************************** 2026-03-04T19:42:46,520 !! 2026-03-04T19:42:46,520 check.warn(importable) 2026-03-04T19:42:46,521 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyboolnet.repository.__pycache__' is absent from the `packages` configuration. 2026-03-04T19:42:46,521 !! 2026-03-04T19:42:46,522 ******************************************************************************** 2026-03-04T19:42:46,523 ############################ 2026-03-04T19:42:46,523 # Package would be ignored # 2026-03-04T19:42:46,524 ############################ 2026-03-04T19:42:46,524 Python recognizes 'pyboolnet.repository.__pycache__' as an importable package[^1], 2026-03-04T19:42:46,525 but it is absent from setuptools' `packages` configuration. 2026-03-04T19:42:46,526 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-04T19:42:46,526 package, please make sure that 'pyboolnet.repository.__pycache__' is explicitly added 2026-03-04T19:42:46,527 to the `packages` configuration field. 2026-03-04T19:42:46,527 Alternatively, you can also rely on setuptools' discovery methods 2026-03-04T19:42:46,528 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-04T19:42:46,528 instead of `find_packages(...)`/`find:`). 2026-03-04T19:42:46,529 You can read more about "package discovery" on setuptools documentation page: 2026-03-04T19:42:46,530 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-04T19:42:46,530 If you don't want 'pyboolnet.repository.__pycache__' to be distributed and are 2026-03-04T19:42:46,531 already explicitly excluding 'pyboolnet.repository.__pycache__' via 2026-03-04T19:42:46,531 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-04T19:42:46,532 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-04T19:42:46,532 combination with a more fine grained `package-data` configuration. 2026-03-04T19:42:46,533 You can read more about "package data files" on setuptools documentation page: 2026-03-04T19:42:46,533 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-04T19:42:46,535 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-04T19:42:46,535 even if it does not contain any `.py` files. 2026-03-04T19:42:46,536 On the other hand, currently there is no concept of package data 2026-03-04T19:42:46,536 directory, all directories are treated like packages. 2026-03-04T19:42:46,537 ******************************************************************************** 2026-03-04T19:42:46,538 !! 2026-03-04T19:42:46,539 check.warn(importable) 2026-03-04T19:42:46,539 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyboolnet.repository.arellano_rootstem' is absent from the `packages` configuration. 2026-03-04T19:42:46,540 !! 2026-03-04T19:42:46,541 ******************************************************************************** 2026-03-04T19:42:46,541 ############################ 2026-03-04T19:42:46,542 # Package would be ignored # 2026-03-04T19:42:46,543 ############################ 2026-03-04T19:42:46,543 Python recognizes 'pyboolnet.repository.arellano_rootstem' as an importable package[^1], 2026-03-04T19:42:46,544 but it is absent from setuptools' `packages` configuration. 2026-03-04T19:42:46,545 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-04T19:42:46,545 package, please make sure that 'pyboolnet.repository.arellano_rootstem' is explicitly added 2026-03-04T19:42:46,546 to the `packages` configuration field. 2026-03-04T19:42:46,547 Alternatively, you can also rely on setuptools' discovery methods 2026-03-04T19:42:46,547 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-04T19:42:46,548 instead of `find_packages(...)`/`find:`). 2026-03-04T19:42:46,548 You can read more about "package discovery" on setuptools documentation page: 2026-03-04T19:42:46,550 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-04T19:42:46,551 If you don't want 'pyboolnet.repository.arellano_rootstem' to be distributed and are 2026-03-04T19:42:46,551 already explicitly excluding 'pyboolnet.repository.arellano_rootstem' via 2026-03-04T19:42:46,552 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-04T19:42:46,552 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-04T19:42:46,553 combination with a more fine grained `package-data` configuration. 2026-03-04T19:42:46,554 You can read more about "package data files" on setuptools documentation page: 2026-03-04T19:42:46,555 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-04T19:42:46,556 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-04T19:42:46,556 even if it does not contain any `.py` files. 2026-03-04T19:42:46,556 On the other hand, currently there is no concept of package data 2026-03-04T19:42:46,557 directory, all directories are treated like packages. 2026-03-04T19:42:46,557 ******************************************************************************** 2026-03-04T19:42:46,558 !! 2026-03-04T19:42:46,558 check.warn(importable) 2026-03-04T19:42:46,559 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyboolnet.repository.calzone_cellfate' is absent from the `packages` configuration. 2026-03-04T19:42:46,559 !! 2026-03-04T19:42:46,560 ******************************************************************************** 2026-03-04T19:42:46,560 ############################ 2026-03-04T19:42:46,561 # Package would be ignored # 2026-03-04T19:42:46,561 ############################ 2026-03-04T19:42:46,561 Python recognizes 'pyboolnet.repository.calzone_cellfate' as an importable package[^1], 2026-03-04T19:42:46,562 but it is absent from setuptools' `packages` configuration. 2026-03-04T19:42:46,563 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-04T19:42:46,563 package, please make sure that 'pyboolnet.repository.calzone_cellfate' is explicitly added 2026-03-04T19:42:46,564 to the `packages` configuration field. 2026-03-04T19:42:46,564 Alternatively, you can also rely on setuptools' discovery methods 2026-03-04T19:42:46,565 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-04T19:42:46,565 instead of `find_packages(...)`/`find:`). 2026-03-04T19:42:46,566 You can read more about "package discovery" on setuptools documentation page: 2026-03-04T19:42:46,567 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-04T19:42:46,569 If you don't want 'pyboolnet.repository.calzone_cellfate' to be distributed and are 2026-03-04T19:42:46,569 already explicitly excluding 'pyboolnet.repository.calzone_cellfate' via 2026-03-04T19:42:46,570 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-04T19:42:46,570 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-04T19:42:46,571 combination with a more fine grained `package-data` configuration. 2026-03-04T19:42:46,572 You can read more about "package data files" on setuptools documentation page: 2026-03-04T19:42:46,573 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-04T19:42:46,574 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-04T19:42:46,575 even if it does not contain any `.py` files. 2026-03-04T19:42:46,575 On the other hand, currently there is no concept of package data 2026-03-04T19:42:46,576 directory, all directories are treated like packages. 2026-03-04T19:42:46,576 ******************************************************************************** 2026-03-04T19:42:46,577 !! 2026-03-04T19:42:46,578 check.warn(importable) 2026-03-04T19:42:46,579 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyboolnet.repository.dahlhaus_neuroplastoma' is absent from the `packages` configuration. 2026-03-04T19:42:46,579 !! 2026-03-04T19:42:46,580 ******************************************************************************** 2026-03-04T19:42:46,581 ############################ 2026-03-04T19:42:46,581 # Package would be ignored # 2026-03-04T19:42:46,581 ############################ 2026-03-04T19:42:46,582 Python recognizes 'pyboolnet.repository.dahlhaus_neuroplastoma' as an importable package[^1], 2026-03-04T19:42:46,582 but it is absent from setuptools' `packages` configuration. 2026-03-04T19:42:46,583 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-04T19:42:46,583 package, please make sure that 'pyboolnet.repository.dahlhaus_neuroplastoma' is explicitly added 2026-03-04T19:42:46,583 to the `packages` configuration field. 2026-03-04T19:42:46,584 Alternatively, you can also rely on setuptools' discovery methods 2026-03-04T19:42:46,585 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-04T19:42:46,585 instead of `find_packages(...)`/`find:`). 2026-03-04T19:42:46,586 You can read more about "package discovery" on setuptools documentation page: 2026-03-04T19:42:46,587 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-04T19:42:46,588 If you don't want 'pyboolnet.repository.dahlhaus_neuroplastoma' to be distributed and are 2026-03-04T19:42:46,588 already explicitly excluding 'pyboolnet.repository.dahlhaus_neuroplastoma' via 2026-03-04T19:42:46,589 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-04T19:42:46,589 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-04T19:42:46,590 combination with a more fine grained `package-data` configuration. 2026-03-04T19:42:46,591 You can read more about "package data files" on setuptools documentation page: 2026-03-04T19:42:46,592 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-04T19:42:46,593 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-04T19:42:46,593 even if it does not contain any `.py` files. 2026-03-04T19:42:46,594 On the other hand, currently there is no concept of package data 2026-03-04T19:42:46,595 directory, all directories are treated like packages. 2026-03-04T19:42:46,595 ******************************************************************************** 2026-03-04T19:42:46,596 !! 2026-03-04T19:42:46,597 check.warn(importable) 2026-03-04T19:42:46,597 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyboolnet.repository.davidich_yeast' is absent from the `packages` configuration. 2026-03-04T19:42:46,598 !! 2026-03-04T19:42:46,599 ******************************************************************************** 2026-03-04T19:42:46,599 ############################ 2026-03-04T19:42:46,600 # Package would be ignored # 2026-03-04T19:42:46,600 ############################ 2026-03-04T19:42:46,600 Python recognizes 'pyboolnet.repository.davidich_yeast' as an importable package[^1], 2026-03-04T19:42:46,601 but it is absent from setuptools' `packages` configuration. 2026-03-04T19:42:46,602 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-04T19:42:46,602 package, please make sure that 'pyboolnet.repository.davidich_yeast' is explicitly added 2026-03-04T19:42:46,603 to the `packages` configuration field. 2026-03-04T19:42:46,604 Alternatively, you can also rely on setuptools' discovery methods 2026-03-04T19:42:46,605 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-04T19:42:46,605 instead of `find_packages(...)`/`find:`). 2026-03-04T19:42:46,606 You can read more about "package discovery" on setuptools documentation page: 2026-03-04T19:42:46,607 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-04T19:42:46,608 If you don't want 'pyboolnet.repository.davidich_yeast' to be distributed and are 2026-03-04T19:42:46,608 already explicitly excluding 'pyboolnet.repository.davidich_yeast' via 2026-03-04T19:42:46,608 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-04T19:42:46,609 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-04T19:42:46,609 combination with a more fine grained `package-data` configuration. 2026-03-04T19:42:46,610 You can read more about "package data files" on setuptools documentation page: 2026-03-04T19:42:46,611 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-04T19:42:46,612 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-04T19:42:46,612 even if it does not contain any `.py` files. 2026-03-04T19:42:46,612 On the other hand, currently there is no concept of package data 2026-03-04T19:42:46,613 directory, all directories are treated like packages. 2026-03-04T19:42:46,613 ******************************************************************************** 2026-03-04T19:42:46,614 !! 2026-03-04T19:42:46,614 check.warn(importable) 2026-03-04T19:42:46,615 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyboolnet.repository.dinwoodie_life' is absent from the `packages` configuration. 2026-03-04T19:42:46,615 !! 2026-03-04T19:42:46,616 ******************************************************************************** 2026-03-04T19:42:46,616 ############################ 2026-03-04T19:42:46,617 # Package would be ignored # 2026-03-04T19:42:46,617 ############################ 2026-03-04T19:42:46,618 Python recognizes 'pyboolnet.repository.dinwoodie_life' as an importable package[^1], 2026-03-04T19:42:46,618 but it is absent from setuptools' `packages` configuration. 2026-03-04T19:42:46,619 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-04T19:42:46,620 package, please make sure that 'pyboolnet.repository.dinwoodie_life' is explicitly added 2026-03-04T19:42:46,620 to the `packages` configuration field. 2026-03-04T19:42:46,622 Alternatively, you can also rely on setuptools' discovery methods 2026-03-04T19:42:46,622 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-04T19:42:46,623 instead of `find_packages(...)`/`find:`). 2026-03-04T19:42:46,624 You can read more about "package discovery" on setuptools documentation page: 2026-03-04T19:42:46,625 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-04T19:42:46,626 If you don't want 'pyboolnet.repository.dinwoodie_life' to be distributed and are 2026-03-04T19:42:46,626 already explicitly excluding 'pyboolnet.repository.dinwoodie_life' via 2026-03-04T19:42:46,627 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-04T19:42:46,627 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-04T19:42:46,628 combination with a more fine grained `package-data` configuration. 2026-03-04T19:42:46,629 You can read more about "package data files" on setuptools documentation page: 2026-03-04T19:42:46,630 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-04T19:42:46,631 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-04T19:42:46,632 even if it does not contain any `.py` files. 2026-03-04T19:42:46,632 On the other hand, currently there is no concept of package data 2026-03-04T19:42:46,633 directory, all directories are treated like packages. 2026-03-04T19:42:46,633 ******************************************************************************** 2026-03-04T19:42:46,634 !! 2026-03-04T19:42:46,634 check.warn(importable) 2026-03-04T19:42:46,634 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyboolnet.repository.dinwoodie_stomatal' is absent from the `packages` configuration. 2026-03-04T19:42:46,635 !! 2026-03-04T19:42:46,636 ******************************************************************************** 2026-03-04T19:42:46,636 ############################ 2026-03-04T19:42:46,636 # Package would be ignored # 2026-03-04T19:42:46,637 ############################ 2026-03-04T19:42:46,637 Python recognizes 'pyboolnet.repository.dinwoodie_stomatal' as an importable package[^1], 2026-03-04T19:42:46,637 but it is absent from setuptools' `packages` configuration. 2026-03-04T19:42:46,638 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-04T19:42:46,639 package, please make sure that 'pyboolnet.repository.dinwoodie_stomatal' is explicitly added 2026-03-04T19:42:46,639 to the `packages` configuration field. 2026-03-04T19:42:46,640 Alternatively, you can also rely on setuptools' discovery methods 2026-03-04T19:42:46,640 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-04T19:42:46,641 instead of `find_packages(...)`/`find:`). 2026-03-04T19:42:46,642 You can read more about "package discovery" on setuptools documentation page: 2026-03-04T19:42:46,643 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-04T19:42:46,644 If you don't want 'pyboolnet.repository.dinwoodie_stomatal' to be distributed and are 2026-03-04T19:42:46,644 already explicitly excluding 'pyboolnet.repository.dinwoodie_stomatal' via 2026-03-04T19:42:46,645 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-04T19:42:46,645 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-04T19:42:46,646 combination with a more fine grained `package-data` configuration. 2026-03-04T19:42:46,647 You can read more about "package data files" on setuptools documentation page: 2026-03-04T19:42:46,648 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-04T19:42:46,649 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-04T19:42:46,650 even if it does not contain any `.py` files. 2026-03-04T19:42:46,650 On the other hand, currently there is no concept of package data 2026-03-04T19:42:46,651 directory, all directories are treated like packages. 2026-03-04T19:42:46,651 ******************************************************************************** 2026-03-04T19:42:46,652 !! 2026-03-04T19:42:46,653 check.warn(importable) 2026-03-04T19:42:46,653 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyboolnet.repository.faure_cellcycle' is absent from the `packages` configuration. 2026-03-04T19:42:46,654 !! 2026-03-04T19:42:46,655 ******************************************************************************** 2026-03-04T19:42:46,655 ############################ 2026-03-04T19:42:46,656 # Package would be ignored # 2026-03-04T19:42:46,656 ############################ 2026-03-04T19:42:46,657 Python recognizes 'pyboolnet.repository.faure_cellcycle' as an importable package[^1], 2026-03-04T19:42:46,657 but it is absent from setuptools' `packages` configuration. 2026-03-04T19:42:46,659 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-04T19:42:46,659 package, please make sure that 'pyboolnet.repository.faure_cellcycle' is explicitly added 2026-03-04T19:42:46,659 to the `packages` configuration field. 2026-03-04T19:42:46,660 Alternatively, you can also rely on setuptools' discovery methods 2026-03-04T19:42:46,661 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-04T19:42:46,661 instead of `find_packages(...)`/`find:`). 2026-03-04T19:42:46,662 You can read more about "package discovery" on setuptools documentation page: 2026-03-04T19:42:46,663 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-04T19:42:46,663 If you don't want 'pyboolnet.repository.faure_cellcycle' to be distributed and are 2026-03-04T19:42:46,664 already explicitly excluding 'pyboolnet.repository.faure_cellcycle' via 2026-03-04T19:42:46,664 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-04T19:42:46,665 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-04T19:42:46,665 combination with a more fine grained `package-data` configuration. 2026-03-04T19:42:46,666 You can read more about "package data files" on setuptools documentation page: 2026-03-04T19:42:46,666 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-04T19:42:46,668 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-04T19:42:46,668 even if it does not contain any `.py` files. 2026-03-04T19:42:46,669 On the other hand, currently there is no concept of package data 2026-03-04T19:42:46,669 directory, all directories are treated like packages. 2026-03-04T19:42:46,670 ******************************************************************************** 2026-03-04T19:42:46,671 !! 2026-03-04T19:42:46,671 check.warn(importable) 2026-03-04T19:42:46,671 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyboolnet.repository.grieco_mapk' is absent from the `packages` configuration. 2026-03-04T19:42:46,672 !! 2026-03-04T19:42:46,673 ******************************************************************************** 2026-03-04T19:42:46,673 ############################ 2026-03-04T19:42:46,674 # Package would be ignored # 2026-03-04T19:42:46,675 ############################ 2026-03-04T19:42:46,675 Python recognizes 'pyboolnet.repository.grieco_mapk' as an importable package[^1], 2026-03-04T19:42:46,676 but it is absent from setuptools' `packages` configuration. 2026-03-04T19:42:46,676 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-04T19:42:46,677 package, please make sure that 'pyboolnet.repository.grieco_mapk' is explicitly added 2026-03-04T19:42:46,677 to the `packages` configuration field. 2026-03-04T19:42:46,678 Alternatively, you can also rely on setuptools' discovery methods 2026-03-04T19:42:46,679 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-04T19:42:46,679 instead of `find_packages(...)`/`find:`). 2026-03-04T19:42:46,680 You can read more about "package discovery" on setuptools documentation page: 2026-03-04T19:42:46,681 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-04T19:42:46,683 If you don't want 'pyboolnet.repository.grieco_mapk' to be distributed and are 2026-03-04T19:42:46,683 already explicitly excluding 'pyboolnet.repository.grieco_mapk' via 2026-03-04T19:42:46,684 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-04T19:42:46,684 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-04T19:42:46,685 combination with a more fine grained `package-data` configuration. 2026-03-04T19:42:46,686 You can read more about "package data files" on setuptools documentation page: 2026-03-04T19:42:46,687 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-04T19:42:46,688 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-04T19:42:46,688 even if it does not contain any `.py` files. 2026-03-04T19:42:46,688 On the other hand, currently there is no concept of package data 2026-03-04T19:42:46,689 directory, all directories are treated like packages. 2026-03-04T19:42:46,689 ******************************************************************************** 2026-03-04T19:42:46,690 !! 2026-03-04T19:42:46,690 check.warn(importable) 2026-03-04T19:42:46,691 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyboolnet.repository.irons_yeast' is absent from the `packages` configuration. 2026-03-04T19:42:46,691 !! 2026-03-04T19:42:46,692 ******************************************************************************** 2026-03-04T19:42:46,692 ############################ 2026-03-04T19:42:46,692 # Package would be ignored # 2026-03-04T19:42:46,693 ############################ 2026-03-04T19:42:46,693 Python recognizes 'pyboolnet.repository.irons_yeast' as an importable package[^1], 2026-03-04T19:42:46,693 but it is absent from setuptools' `packages` configuration. 2026-03-04T19:42:46,694 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-04T19:42:46,695 package, please make sure that 'pyboolnet.repository.irons_yeast' is explicitly added 2026-03-04T19:42:46,695 to the `packages` configuration field. 2026-03-04T19:42:46,696 Alternatively, you can also rely on setuptools' discovery methods 2026-03-04T19:42:46,697 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-04T19:42:46,697 instead of `find_packages(...)`/`find:`). 2026-03-04T19:42:46,698 You can read more about "package discovery" on setuptools documentation page: 2026-03-04T19:42:46,699 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-04T19:42:46,700 If you don't want 'pyboolnet.repository.irons_yeast' to be distributed and are 2026-03-04T19:42:46,701 already explicitly excluding 'pyboolnet.repository.irons_yeast' via 2026-03-04T19:42:46,701 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-04T19:42:46,702 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-04T19:42:46,703 combination with a more fine grained `package-data` configuration. 2026-03-04T19:42:46,703 You can read more about "package data files" on setuptools documentation page: 2026-03-04T19:42:46,705 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-04T19:42:46,706 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-04T19:42:46,707 even if it does not contain any `.py` files. 2026-03-04T19:42:46,707 On the other hand, currently there is no concept of package data 2026-03-04T19:42:46,707 directory, all directories are treated like packages. 2026-03-04T19:42:46,708 ******************************************************************************** 2026-03-04T19:42:46,709 !! 2026-03-04T19:42:46,710 check.warn(importable) 2026-03-04T19:42:46,710 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyboolnet.repository.jaoude_thdiff' is absent from the `packages` configuration. 2026-03-04T19:42:46,711 !! 2026-03-04T19:42:46,712 ******************************************************************************** 2026-03-04T19:42:46,712 ############################ 2026-03-04T19:42:46,713 # Package would be ignored # 2026-03-04T19:42:46,713 ############################ 2026-03-04T19:42:46,713 Python recognizes 'pyboolnet.repository.jaoude_thdiff' as an importable package[^1], 2026-03-04T19:42:46,714 but it is absent from setuptools' `packages` configuration. 2026-03-04T19:42:46,714 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-04T19:42:46,715 package, please make sure that 'pyboolnet.repository.jaoude_thdiff' is explicitly added 2026-03-04T19:42:46,715 to the `packages` configuration field. 2026-03-04T19:42:46,716 Alternatively, you can also rely on setuptools' discovery methods 2026-03-04T19:42:46,716 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-04T19:42:46,717 instead of `find_packages(...)`/`find:`). 2026-03-04T19:42:46,717 You can read more about "package discovery" on setuptools documentation page: 2026-03-04T19:42:46,718 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-04T19:42:46,719 If you don't want 'pyboolnet.repository.jaoude_thdiff' to be distributed and are 2026-03-04T19:42:46,719 already explicitly excluding 'pyboolnet.repository.jaoude_thdiff' via 2026-03-04T19:42:46,720 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-04T19:42:46,720 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-04T19:42:46,721 combination with a more fine grained `package-data` configuration. 2026-03-04T19:42:46,722 You can read more about "package data files" on setuptools documentation page: 2026-03-04T19:42:46,723 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-04T19:42:46,724 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-04T19:42:46,725 even if it does not contain any `.py` files. 2026-03-04T19:42:46,726 On the other hand, currently there is no concept of package data 2026-03-04T19:42:46,726 directory, all directories are treated like packages. 2026-03-04T19:42:46,727 ******************************************************************************** 2026-03-04T19:42:46,728 !! 2026-03-04T19:42:46,728 check.warn(importable) 2026-03-04T19:42:46,729 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyboolnet.repository.klamt_tcr' is absent from the `packages` configuration. 2026-03-04T19:42:46,730 !! 2026-03-04T19:42:46,730 ******************************************************************************** 2026-03-04T19:42:46,731 ############################ 2026-03-04T19:42:46,732 # Package would be ignored # 2026-03-04T19:42:46,732 ############################ 2026-03-04T19:42:46,733 Python recognizes 'pyboolnet.repository.klamt_tcr' as an importable package[^1], 2026-03-04T19:42:46,733 but it is absent from setuptools' `packages` configuration. 2026-03-04T19:42:46,734 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-04T19:42:46,735 package, please make sure that 'pyboolnet.repository.klamt_tcr' is explicitly added 2026-03-04T19:42:46,735 to the `packages` configuration field. 2026-03-04T19:42:46,736 Alternatively, you can also rely on setuptools' discovery methods 2026-03-04T19:42:46,737 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-04T19:42:46,738 instead of `find_packages(...)`/`find:`). 2026-03-04T19:42:46,739 You can read more about "package discovery" on setuptools documentation page: 2026-03-04T19:42:46,740 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-04T19:42:46,740 If you don't want 'pyboolnet.repository.klamt_tcr' to be distributed and are 2026-03-04T19:42:46,741 already explicitly excluding 'pyboolnet.repository.klamt_tcr' via 2026-03-04T19:42:46,741 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-04T19:42:46,742 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-04T19:42:46,742 combination with a more fine grained `package-data` configuration. 2026-03-04T19:42:46,743 You can read more about "package data files" on setuptools documentation page: 2026-03-04T19:42:46,744 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-04T19:42:46,745 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-04T19:42:46,745 even if it does not contain any `.py` files. 2026-03-04T19:42:46,746 On the other hand, currently there is no concept of package data 2026-03-04T19:42:46,746 directory, all directories are treated like packages. 2026-03-04T19:42:46,746 ******************************************************************************** 2026-03-04T19:42:46,747 !! 2026-03-04T19:42:46,748 check.warn(importable) 2026-03-04T19:42:46,748 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyboolnet.repository.krumsiek_myeloid' is absent from the `packages` configuration. 2026-03-04T19:42:46,749 !! 2026-03-04T19:42:46,749 ******************************************************************************** 2026-03-04T19:42:46,750 ############################ 2026-03-04T19:42:46,750 # Package would be ignored # 2026-03-04T19:42:46,751 ############################ 2026-03-04T19:42:46,751 Python recognizes 'pyboolnet.repository.krumsiek_myeloid' as an importable package[^1], 2026-03-04T19:42:46,752 but it is absent from setuptools' `packages` configuration. 2026-03-04T19:42:46,753 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-04T19:42:46,753 package, please make sure that 'pyboolnet.repository.krumsiek_myeloid' is explicitly added 2026-03-04T19:42:46,754 to the `packages` configuration field. 2026-03-04T19:42:46,755 Alternatively, you can also rely on setuptools' discovery methods 2026-03-04T19:42:46,755 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-04T19:42:46,755 instead of `find_packages(...)`/`find:`). 2026-03-04T19:42:46,756 You can read more about "package discovery" on setuptools documentation page: 2026-03-04T19:42:46,757 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-04T19:42:46,758 If you don't want 'pyboolnet.repository.krumsiek_myeloid' to be distributed and are 2026-03-04T19:42:46,759 already explicitly excluding 'pyboolnet.repository.krumsiek_myeloid' via 2026-03-04T19:42:46,759 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-04T19:42:46,760 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-04T19:42:46,760 combination with a more fine grained `package-data` configuration. 2026-03-04T19:42:46,761 You can read more about "package data files" on setuptools documentation page: 2026-03-04T19:42:46,762 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-04T19:42:46,765 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-04T19:42:46,765 even if it does not contain any `.py` files. 2026-03-04T19:42:46,766 On the other hand, currently there is no concept of package data 2026-03-04T19:42:46,767 directory, all directories are treated like packages. 2026-03-04T19:42:46,767 ******************************************************************************** 2026-03-04T19:42:46,768 !! 2026-03-04T19:42:46,769 check.warn(importable) 2026-03-04T19:42:46,770 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyboolnet.repository.multivalued' is absent from the `packages` configuration. 2026-03-04T19:42:46,770 !! 2026-03-04T19:42:46,771 ******************************************************************************** 2026-03-04T19:42:46,772 ############################ 2026-03-04T19:42:46,772 # Package would be ignored # 2026-03-04T19:42:46,773 ############################ 2026-03-04T19:42:46,773 Python recognizes 'pyboolnet.repository.multivalued' as an importable package[^1], 2026-03-04T19:42:46,774 but it is absent from setuptools' `packages` configuration. 2026-03-04T19:42:46,775 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-04T19:42:46,775 package, please make sure that 'pyboolnet.repository.multivalued' is explicitly added 2026-03-04T19:42:46,776 to the `packages` configuration field. 2026-03-04T19:42:46,777 Alternatively, you can also rely on setuptools' discovery methods 2026-03-04T19:42:46,778 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-04T19:42:46,778 instead of `find_packages(...)`/`find:`). 2026-03-04T19:42:46,779 You can read more about "package discovery" on setuptools documentation page: 2026-03-04T19:42:46,781 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-04T19:42:46,782 If you don't want 'pyboolnet.repository.multivalued' to be distributed and are 2026-03-04T19:42:46,783 already explicitly excluding 'pyboolnet.repository.multivalued' via 2026-03-04T19:42:46,783 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-04T19:42:46,784 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-04T19:42:46,785 combination with a more fine grained `package-data` configuration. 2026-03-04T19:42:46,786 You can read more about "package data files" on setuptools documentation page: 2026-03-04T19:42:46,787 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-04T19:42:46,789 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-04T19:42:46,790 even if it does not contain any `.py` files. 2026-03-04T19:42:46,791 On the other hand, currently there is no concept of package data 2026-03-04T19:42:46,791 directory, all directories are treated like packages. 2026-03-04T19:42:46,792 ******************************************************************************** 2026-03-04T19:42:46,794 !! 2026-03-04T19:42:46,794 check.warn(importable) 2026-03-04T19:42:46,795 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyboolnet.repository.n12c5' is absent from the `packages` configuration. 2026-03-04T19:42:46,796 !! 2026-03-04T19:42:46,797 ******************************************************************************** 2026-03-04T19:42:46,798 ############################ 2026-03-04T19:42:46,798 # Package would be ignored # 2026-03-04T19:42:46,799 ############################ 2026-03-04T19:42:46,800 Python recognizes 'pyboolnet.repository.n12c5' as an importable package[^1], 2026-03-04T19:42:46,801 but it is absent from setuptools' `packages` configuration. 2026-03-04T19:42:46,802 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-04T19:42:46,803 package, please make sure that 'pyboolnet.repository.n12c5' is explicitly added 2026-03-04T19:42:46,804 to the `packages` configuration field. 2026-03-04T19:42:46,805 Alternatively, you can also rely on setuptools' discovery methods 2026-03-04T19:42:46,805 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-04T19:42:46,806 instead of `find_packages(...)`/`find:`). 2026-03-04T19:42:46,807 You can read more about "package discovery" on setuptools documentation page: 2026-03-04T19:42:46,808 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-04T19:42:46,810 If you don't want 'pyboolnet.repository.n12c5' to be distributed and are 2026-03-04T19:42:46,810 already explicitly excluding 'pyboolnet.repository.n12c5' via 2026-03-04T19:42:46,811 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-04T19:42:46,812 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-04T19:42:46,812 combination with a more fine grained `package-data` configuration. 2026-03-04T19:42:46,813 You can read more about "package data files" on setuptools documentation page: 2026-03-04T19:42:46,815 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-04T19:42:46,817 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-04T19:42:46,817 even if it does not contain any `.py` files. 2026-03-04T19:42:46,818 On the other hand, currently there is no concept of package data 2026-03-04T19:42:46,819 directory, all directories are treated like packages. 2026-03-04T19:42:46,819 ******************************************************************************** 2026-03-04T19:42:46,821 !! 2026-03-04T19:42:46,821 check.warn(importable) 2026-03-04T19:42:46,822 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyboolnet.repository.n3s1c1a' is absent from the `packages` configuration. 2026-03-04T19:42:46,823 !! 2026-03-04T19:42:46,825 ******************************************************************************** 2026-03-04T19:42:46,825 ############################ 2026-03-04T19:42:46,826 # Package would be ignored # 2026-03-04T19:42:46,827 ############################ 2026-03-04T19:42:46,827 Python recognizes 'pyboolnet.repository.n3s1c1a' as an importable package[^1], 2026-03-04T19:42:46,828 but it is absent from setuptools' `packages` configuration. 2026-03-04T19:42:46,832 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-04T19:42:46,833 package, please make sure that 'pyboolnet.repository.n3s1c1a' is explicitly added 2026-03-04T19:42:46,834 to the `packages` configuration field. 2026-03-04T19:42:46,836 Alternatively, you can also rely on setuptools' discovery methods 2026-03-04T19:42:46,837 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-04T19:42:46,837 instead of `find_packages(...)`/`find:`). 2026-03-04T19:42:46,839 You can read more about "package discovery" on setuptools documentation page: 2026-03-04T19:42:46,841 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-04T19:42:46,842 If you don't want 'pyboolnet.repository.n3s1c1a' to be distributed and are 2026-03-04T19:42:46,843 already explicitly excluding 'pyboolnet.repository.n3s1c1a' via 2026-03-04T19:42:46,844 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-04T19:42:46,844 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-04T19:42:46,845 combination with a more fine grained `package-data` configuration. 2026-03-04T19:42:46,847 You can read more about "package data files" on setuptools documentation page: 2026-03-04T19:42:46,848 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-04T19:42:46,850 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-04T19:42:46,850 even if it does not contain any `.py` files. 2026-03-04T19:42:46,851 On the other hand, currently there is no concept of package data 2026-03-04T19:42:46,852 directory, all directories are treated like packages. 2026-03-04T19:42:46,852 ******************************************************************************** 2026-03-04T19:42:46,853 !! 2026-03-04T19:42:46,854 check.warn(importable) 2026-03-04T19:42:46,855 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyboolnet.repository.n3s1c1b' is absent from the `packages` configuration. 2026-03-04T19:42:46,855 !! 2026-03-04T19:42:46,857 ******************************************************************************** 2026-03-04T19:42:46,857 ############################ 2026-03-04T19:42:46,858 # Package would be ignored # 2026-03-04T19:42:46,858 ############################ 2026-03-04T19:42:46,859 Python recognizes 'pyboolnet.repository.n3s1c1b' as an importable package[^1], 2026-03-04T19:42:46,860 but it is absent from setuptools' `packages` configuration. 2026-03-04T19:42:46,861 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-04T19:42:46,862 package, please make sure that 'pyboolnet.repository.n3s1c1b' is explicitly added 2026-03-04T19:42:46,862 to the `packages` configuration field. 2026-03-04T19:42:46,864 Alternatively, you can also rely on setuptools' discovery methods 2026-03-04T19:42:46,864 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-04T19:42:46,865 instead of `find_packages(...)`/`find:`). 2026-03-04T19:42:46,866 You can read more about "package discovery" on setuptools documentation page: 2026-03-04T19:42:46,867 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-04T19:42:46,869 If you don't want 'pyboolnet.repository.n3s1c1b' to be distributed and are 2026-03-04T19:42:46,869 already explicitly excluding 'pyboolnet.repository.n3s1c1b' via 2026-03-04T19:42:46,870 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-04T19:42:46,871 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-04T19:42:46,871 combination with a more fine grained `package-data` configuration. 2026-03-04T19:42:46,873 You can read more about "package data files" on setuptools documentation page: 2026-03-04T19:42:46,874 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-04T19:42:46,878 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-04T19:42:46,884 even if it does not contain any `.py` files. 2026-03-04T19:42:46,890 On the other hand, currently there is no concept of package data 2026-03-04T19:42:46,905 directory, all directories are treated like packages. 2026-03-04T19:42:46,916 ******************************************************************************** 2026-03-04T19:42:46,917 !! 2026-03-04T19:42:46,918 check.warn(importable) 2026-03-04T19:42:46,918 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyboolnet.repository.n5s3' is absent from the `packages` configuration. 2026-03-04T19:42:46,919 !! 2026-03-04T19:42:46,923 ******************************************************************************** 2026-03-04T19:42:46,924 ############################ 2026-03-04T19:42:46,925 # Package would be ignored # 2026-03-04T19:42:46,927 ############################ 2026-03-04T19:42:46,928 Python recognizes 'pyboolnet.repository.n5s3' as an importable package[^1], 2026-03-04T19:42:46,928 but it is absent from setuptools' `packages` configuration. 2026-03-04T19:42:46,930 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-04T19:42:46,930 package, please make sure that 'pyboolnet.repository.n5s3' is explicitly added 2026-03-04T19:42:46,937 to the `packages` configuration field. 2026-03-04T19:42:46,938 Alternatively, you can also rely on setuptools' discovery methods 2026-03-04T19:42:46,939 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-04T19:42:46,939 instead of `find_packages(...)`/`find:`). 2026-03-04T19:42:46,940 You can read more about "package discovery" on setuptools documentation page: 2026-03-04T19:42:46,941 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-04T19:42:46,942 If you don't want 'pyboolnet.repository.n5s3' to be distributed and are 2026-03-04T19:42:46,942 already explicitly excluding 'pyboolnet.repository.n5s3' via 2026-03-04T19:42:46,943 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-04T19:42:46,943 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-04T19:42:46,944 combination with a more fine grained `package-data` configuration. 2026-03-04T19:42:46,945 You can read more about "package data files" on setuptools documentation page: 2026-03-04T19:42:46,946 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-04T19:42:46,947 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-04T19:42:46,950 even if it does not contain any `.py` files. 2026-03-04T19:42:46,954 On the other hand, currently there is no concept of package data 2026-03-04T19:42:46,965 directory, all directories are treated like packages. 2026-03-04T19:42:46,981 ******************************************************************************** 2026-03-04T19:42:46,988 !! 2026-03-04T19:42:46,991 check.warn(importable) 2026-03-04T19:42:46,993 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyboolnet.repository.n6s1c2' is absent from the `packages` configuration. 2026-03-04T19:42:46,996 !! 2026-03-04T19:42:47,040 ******************************************************************************** 2026-03-04T19:42:47,041 ############################ 2026-03-04T19:42:47,042 # Package would be ignored # 2026-03-04T19:42:47,044 ############################ 2026-03-04T19:42:47,046 Python recognizes 'pyboolnet.repository.n6s1c2' as an importable package[^1], 2026-03-04T19:42:47,047 but it is absent from setuptools' `packages` configuration. 2026-03-04T19:42:47,052 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-04T19:42:47,055 package, please make sure that 'pyboolnet.repository.n6s1c2' is explicitly added 2026-03-04T19:42:47,056 to the `packages` configuration field. 2026-03-04T19:42:47,057 Alternatively, you can also rely on setuptools' discovery methods 2026-03-04T19:42:47,058 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-04T19:42:47,058 instead of `find_packages(...)`/`find:`). 2026-03-04T19:42:47,060 You can read more about "package discovery" on setuptools documentation page: 2026-03-04T19:42:47,066 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-04T19:42:47,068 If you don't want 'pyboolnet.repository.n6s1c2' to be distributed and are 2026-03-04T19:42:47,069 already explicitly excluding 'pyboolnet.repository.n6s1c2' via 2026-03-04T19:42:47,070 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-04T19:42:47,074 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-04T19:42:47,076 combination with a more fine grained `package-data` configuration. 2026-03-04T19:42:47,078 You can read more about "package data files" on setuptools documentation page: 2026-03-04T19:42:47,088 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-04T19:42:47,096 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-04T19:42:47,097 even if it does not contain any `.py` files. 2026-03-04T19:42:47,100 On the other hand, currently there is no concept of package data 2026-03-04T19:42:47,102 directory, all directories are treated like packages. 2026-03-04T19:42:47,103 ******************************************************************************** 2026-03-04T19:42:47,118 !! 2026-03-04T19:42:47,119 check.warn(importable) 2026-03-04T19:42:47,119 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyboolnet.repository.n7s3' is absent from the `packages` configuration. 2026-03-04T19:42:47,124 !! 2026-03-04T19:42:47,130 ******************************************************************************** 2026-03-04T19:42:47,140 ############################ 2026-03-04T19:42:47,141 # Package would be ignored # 2026-03-04T19:42:47,142 ############################ 2026-03-04T19:42:47,142 Python recognizes 'pyboolnet.repository.n7s3' as an importable package[^1], 2026-03-04T19:42:47,144 but it is absent from setuptools' `packages` configuration. 2026-03-04T19:42:47,155 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-04T19:42:47,162 package, please make sure that 'pyboolnet.repository.n7s3' is explicitly added 2026-03-04T19:42:47,163 to the `packages` configuration field. 2026-03-04T19:42:47,164 Alternatively, you can also rely on setuptools' discovery methods 2026-03-04T19:42:47,165 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-04T19:42:47,165 instead of `find_packages(...)`/`find:`). 2026-03-04T19:42:47,166 You can read more about "package discovery" on setuptools documentation page: 2026-03-04T19:42:47,168 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-04T19:42:47,170 If you don't want 'pyboolnet.repository.n7s3' to be distributed and are 2026-03-04T19:42:47,170 already explicitly excluding 'pyboolnet.repository.n7s3' via 2026-03-04T19:42:47,171 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-04T19:42:47,172 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-04T19:42:47,172 combination with a more fine grained `package-data` configuration. 2026-03-04T19:42:47,173 You can read more about "package data files" on setuptools documentation page: 2026-03-04T19:42:47,175 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-04T19:42:47,176 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-04T19:42:47,177 even if it does not contain any `.py` files. 2026-03-04T19:42:47,179 On the other hand, currently there is no concept of package data 2026-03-04T19:42:47,180 directory, all directories are treated like packages. 2026-03-04T19:42:47,181 ******************************************************************************** 2026-03-04T19:42:47,185 !! 2026-03-04T19:42:47,186 check.warn(importable) 2026-03-04T19:42:47,186 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyboolnet.repository.raf' is absent from the `packages` configuration. 2026-03-04T19:42:47,189 !! 2026-03-04T19:42:47,194 ******************************************************************************** 2026-03-04T19:42:47,194 ############################ 2026-03-04T19:42:47,195 # Package would be ignored # 2026-03-04T19:42:47,195 ############################ 2026-03-04T19:42:47,196 Python recognizes 'pyboolnet.repository.raf' as an importable package[^1], 2026-03-04T19:42:47,197 but it is absent from setuptools' `packages` configuration. 2026-03-04T19:42:47,198 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-04T19:42:47,199 package, please make sure that 'pyboolnet.repository.raf' is explicitly added 2026-03-04T19:42:47,199 to the `packages` configuration field. 2026-03-04T19:42:47,200 Alternatively, you can also rely on setuptools' discovery methods 2026-03-04T19:42:47,201 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-04T19:42:47,201 instead of `find_packages(...)`/`find:`). 2026-03-04T19:42:47,202 You can read more about "package discovery" on setuptools documentation page: 2026-03-04T19:42:47,203 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-04T19:42:47,204 If you don't want 'pyboolnet.repository.raf' to be distributed and are 2026-03-04T19:42:47,205 already explicitly excluding 'pyboolnet.repository.raf' via 2026-03-04T19:42:47,205 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-04T19:42:47,206 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-04T19:42:47,207 combination with a more fine grained `package-data` configuration. 2026-03-04T19:42:47,208 You can read more about "package data files" on setuptools documentation page: 2026-03-04T19:42:47,209 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-04T19:42:47,212 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-04T19:42:47,217 even if it does not contain any `.py` files. 2026-03-04T19:42:47,219 On the other hand, currently there is no concept of package data 2026-03-04T19:42:47,228 directory, all directories are treated like packages. 2026-03-04T19:42:47,234 ******************************************************************************** 2026-03-04T19:42:47,240 !! 2026-03-04T19:42:47,240 check.warn(importable) 2026-03-04T19:42:47,241 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyboolnet.repository.randomnet_n15k3' is absent from the `packages` configuration. 2026-03-04T19:42:47,242 !! 2026-03-04T19:42:47,243 ******************************************************************************** 2026-03-04T19:42:47,243 ############################ 2026-03-04T19:42:47,244 # Package would be ignored # 2026-03-04T19:42:47,245 ############################ 2026-03-04T19:42:47,245 Python recognizes 'pyboolnet.repository.randomnet_n15k3' as an importable package[^1], 2026-03-04T19:42:47,246 but it is absent from setuptools' `packages` configuration. 2026-03-04T19:42:47,249 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-04T19:42:47,251 package, please make sure that 'pyboolnet.repository.randomnet_n15k3' is explicitly added 2026-03-04T19:42:47,251 to the `packages` configuration field. 2026-03-04T19:42:47,253 Alternatively, you can also rely on setuptools' discovery methods 2026-03-04T19:42:47,253 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-04T19:42:47,254 instead of `find_packages(...)`/`find:`). 2026-03-04T19:42:47,255 You can read more about "package discovery" on setuptools documentation page: 2026-03-04T19:42:47,256 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-04T19:42:47,256 If you don't want 'pyboolnet.repository.randomnet_n15k3' to be distributed and are 2026-03-04T19:42:47,257 already explicitly excluding 'pyboolnet.repository.randomnet_n15k3' via 2026-03-04T19:42:47,257 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-04T19:42:47,258 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-04T19:42:47,258 combination with a more fine grained `package-data` configuration. 2026-03-04T19:42:47,259 You can read more about "package data files" on setuptools documentation page: 2026-03-04T19:42:47,260 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-04T19:42:47,261 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-04T19:42:47,262 even if it does not contain any `.py` files. 2026-03-04T19:42:47,262 On the other hand, currently there is no concept of package data 2026-03-04T19:42:47,263 directory, all directories are treated like packages. 2026-03-04T19:42:47,263 ******************************************************************************** 2026-03-04T19:42:47,264 !! 2026-03-04T19:42:47,265 check.warn(importable) 2026-03-04T19:42:47,265 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyboolnet.repository.randomnet_n7k3' is absent from the `packages` configuration. 2026-03-04T19:42:47,266 !! 2026-03-04T19:42:47,267 ******************************************************************************** 2026-03-04T19:42:47,268 ############################ 2026-03-04T19:42:47,268 # Package would be ignored # 2026-03-04T19:42:47,269 ############################ 2026-03-04T19:42:47,269 Python recognizes 'pyboolnet.repository.randomnet_n7k3' as an importable package[^1], 2026-03-04T19:42:47,270 but it is absent from setuptools' `packages` configuration. 2026-03-04T19:42:47,271 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-04T19:42:47,272 package, please make sure that 'pyboolnet.repository.randomnet_n7k3' is explicitly added 2026-03-04T19:42:47,273 to the `packages` configuration field. 2026-03-04T19:42:47,274 Alternatively, you can also rely on setuptools' discovery methods 2026-03-04T19:42:47,275 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-04T19:42:47,276 instead of `find_packages(...)`/`find:`). 2026-03-04T19:42:47,277 You can read more about "package discovery" on setuptools documentation page: 2026-03-04T19:42:47,278 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-04T19:42:47,280 If you don't want 'pyboolnet.repository.randomnet_n7k3' to be distributed and are 2026-03-04T19:42:47,280 already explicitly excluding 'pyboolnet.repository.randomnet_n7k3' via 2026-03-04T19:42:47,281 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-04T19:42:47,282 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-04T19:42:47,282 combination with a more fine grained `package-data` configuration. 2026-03-04T19:42:47,283 You can read more about "package data files" on setuptools documentation page: 2026-03-04T19:42:47,285 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-04T19:42:47,286 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-04T19:42:47,287 even if it does not contain any `.py` files. 2026-03-04T19:42:47,288 On the other hand, currently there is no concept of package data 2026-03-04T19:42:47,289 directory, all directories are treated like packages. 2026-03-04T19:42:47,290 ******************************************************************************** 2026-03-04T19:42:47,291 !! 2026-03-04T19:42:47,291 check.warn(importable) 2026-03-04T19:42:47,292 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyboolnet.repository.remy_tumorigenesis' is absent from the `packages` configuration. 2026-03-04T19:42:47,292 !! 2026-03-04T19:42:47,293 ******************************************************************************** 2026-03-04T19:42:47,294 ############################ 2026-03-04T19:42:47,294 # Package would be ignored # 2026-03-04T19:42:47,295 ############################ 2026-03-04T19:42:47,300 Python recognizes 'pyboolnet.repository.remy_tumorigenesis' as an importable package[^1], 2026-03-04T19:42:47,301 but it is absent from setuptools' `packages` configuration. 2026-03-04T19:42:47,318 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-04T19:42:47,328 package, please make sure that 'pyboolnet.repository.remy_tumorigenesis' is explicitly added 2026-03-04T19:42:47,329 to the `packages` configuration field. 2026-03-04T19:42:47,329 Alternatively, you can also rely on setuptools' discovery methods 2026-03-04T19:42:47,330 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-04T19:42:47,330 instead of `find_packages(...)`/`find:`). 2026-03-04T19:42:47,331 You can read more about "package discovery" on setuptools documentation page: 2026-03-04T19:42:47,332 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-04T19:42:47,334 If you don't want 'pyboolnet.repository.remy_tumorigenesis' to be distributed and are 2026-03-04T19:42:47,334 already explicitly excluding 'pyboolnet.repository.remy_tumorigenesis' via 2026-03-04T19:42:47,335 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-04T19:42:47,336 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-04T19:42:47,336 combination with a more fine grained `package-data` configuration. 2026-03-04T19:42:47,337 You can read more about "package data files" on setuptools documentation page: 2026-03-04T19:42:47,339 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-04T19:42:47,341 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-04T19:42:47,341 even if it does not contain any `.py` files. 2026-03-04T19:42:47,342 On the other hand, currently there is no concept of package data 2026-03-04T19:42:47,342 directory, all directories are treated like packages. 2026-03-04T19:42:47,343 ******************************************************************************** 2026-03-04T19:42:47,344 !! 2026-03-04T19:42:47,345 check.warn(importable) 2026-03-04T19:42:47,345 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyboolnet.repository.saadatpour_guardcell' is absent from the `packages` configuration. 2026-03-04T19:42:47,348 !! 2026-03-04T19:42:47,351 ******************************************************************************** 2026-03-04T19:42:47,353 ############################ 2026-03-04T19:42:47,358 # Package would be ignored # 2026-03-04T19:42:47,368 ############################ 2026-03-04T19:42:47,382 Python recognizes 'pyboolnet.repository.saadatpour_guardcell' as an importable package[^1], 2026-03-04T19:42:47,382 but it is absent from setuptools' `packages` configuration. 2026-03-04T19:42:47,384 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-04T19:42:47,384 package, please make sure that 'pyboolnet.repository.saadatpour_guardcell' is explicitly added 2026-03-04T19:42:47,384 to the `packages` configuration field. 2026-03-04T19:42:47,385 Alternatively, you can also rely on setuptools' discovery methods 2026-03-04T19:42:47,386 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-04T19:42:47,387 instead of `find_packages(...)`/`find:`). 2026-03-04T19:42:47,388 You can read more about "package discovery" on setuptools documentation page: 2026-03-04T19:42:47,389 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-04T19:42:47,390 If you don't want 'pyboolnet.repository.saadatpour_guardcell' to be distributed and are 2026-03-04T19:42:47,390 already explicitly excluding 'pyboolnet.repository.saadatpour_guardcell' via 2026-03-04T19:42:47,391 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-04T19:42:47,392 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-04T19:42:47,392 combination with a more fine grained `package-data` configuration. 2026-03-04T19:42:47,393 You can read more about "package data files" on setuptools documentation page: 2026-03-04T19:42:47,394 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-04T19:42:47,396 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-04T19:42:47,396 even if it does not contain any `.py` files. 2026-03-04T19:42:47,397 On the other hand, currently there is no concept of package data 2026-03-04T19:42:47,397 directory, all directories are treated like packages. 2026-03-04T19:42:47,398 ******************************************************************************** 2026-03-04T19:42:47,400 !! 2026-03-04T19:42:47,400 check.warn(importable) 2026-03-04T19:42:47,401 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyboolnet.repository.selvaggio_emt' is absent from the `packages` configuration. 2026-03-04T19:42:47,401 !! 2026-03-04T19:42:47,403 ******************************************************************************** 2026-03-04T19:42:47,404 ############################ 2026-03-04T19:42:47,404 # Package would be ignored # 2026-03-04T19:42:47,405 ############################ 2026-03-04T19:42:47,406 Python recognizes 'pyboolnet.repository.selvaggio_emt' as an importable package[^1], 2026-03-04T19:42:47,407 but it is absent from setuptools' `packages` configuration. 2026-03-04T19:42:47,412 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-04T19:42:47,432 package, please make sure that 'pyboolnet.repository.selvaggio_emt' is explicitly added 2026-03-04T19:42:47,458 to the `packages` configuration field. 2026-03-04T19:42:47,459 Alternatively, you can also rely on setuptools' discovery methods 2026-03-04T19:42:47,460 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-04T19:42:47,461 instead of `find_packages(...)`/`find:`). 2026-03-04T19:42:47,463 You can read more about "package discovery" on setuptools documentation page: 2026-03-04T19:42:47,464 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-04T19:42:47,466 If you don't want 'pyboolnet.repository.selvaggio_emt' to be distributed and are 2026-03-04T19:42:47,467 already explicitly excluding 'pyboolnet.repository.selvaggio_emt' via 2026-03-04T19:42:47,469 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-04T19:42:47,469 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-04T19:42:47,471 combination with a more fine grained `package-data` configuration. 2026-03-04T19:42:47,472 You can read more about "package data files" on setuptools documentation page: 2026-03-04T19:42:47,474 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-04T19:42:47,476 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-04T19:42:47,477 even if it does not contain any `.py` files. 2026-03-04T19:42:47,479 On the other hand, currently there is no concept of package data 2026-03-04T19:42:47,539 directory, all directories are treated like packages. 2026-03-04T19:42:47,540 ******************************************************************************** 2026-03-04T19:42:47,541 !! 2026-03-04T19:42:47,542 check.warn(importable) 2026-03-04T19:42:47,543 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyboolnet.repository.tournier_apoptosis' is absent from the `packages` configuration. 2026-03-04T19:42:47,543 !! 2026-03-04T19:42:47,545 ******************************************************************************** 2026-03-04T19:42:47,546 ############################ 2026-03-04T19:42:47,547 # Package would be ignored # 2026-03-04T19:42:47,548 ############################ 2026-03-04T19:42:47,548 Python recognizes 'pyboolnet.repository.tournier_apoptosis' as an importable package[^1], 2026-03-04T19:42:47,549 but it is absent from setuptools' `packages` configuration. 2026-03-04T19:42:47,551 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-04T19:42:47,588 package, please make sure that 'pyboolnet.repository.tournier_apoptosis' is explicitly added 2026-03-04T19:42:47,589 to the `packages` configuration field. 2026-03-04T19:42:47,591 Alternatively, you can also rely on setuptools' discovery methods 2026-03-04T19:42:47,591 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-04T19:42:47,592 instead of `find_packages(...)`/`find:`). 2026-03-04T19:42:47,593 You can read more about "package discovery" on setuptools documentation page: 2026-03-04T19:42:47,594 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-04T19:42:47,596 If you don't want 'pyboolnet.repository.tournier_apoptosis' to be distributed and are 2026-03-04T19:42:47,596 already explicitly excluding 'pyboolnet.repository.tournier_apoptosis' via 2026-03-04T19:42:47,597 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-04T19:42:47,598 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-04T19:42:47,599 combination with a more fine grained `package-data` configuration. 2026-03-04T19:42:47,600 You can read more about "package data files" on setuptools documentation page: 2026-03-04T19:42:47,602 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-04T19:42:47,604 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-04T19:42:47,604 even if it does not contain any `.py` files. 2026-03-04T19:42:47,605 On the other hand, currently there is no concept of package data 2026-03-04T19:42:47,606 directory, all directories are treated like packages. 2026-03-04T19:42:47,607 ******************************************************************************** 2026-03-04T19:42:47,608 !! 2026-03-04T19:42:47,609 check.warn(importable) 2026-03-04T19:42:47,610 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyboolnet.repository.xiao_wnt5a' is absent from the `packages` configuration. 2026-03-04T19:42:47,610 !! 2026-03-04T19:42:47,612 ******************************************************************************** 2026-03-04T19:42:47,613 ############################ 2026-03-04T19:42:47,613 # Package would be ignored # 2026-03-04T19:42:47,614 ############################ 2026-03-04T19:42:47,614 Python recognizes 'pyboolnet.repository.xiao_wnt5a' as an importable package[^1], 2026-03-04T19:42:47,615 but it is absent from setuptools' `packages` configuration. 2026-03-04T19:42:47,616 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-04T19:42:47,617 package, please make sure that 'pyboolnet.repository.xiao_wnt5a' is explicitly added 2026-03-04T19:42:47,617 to the `packages` configuration field. 2026-03-04T19:42:47,618 Alternatively, you can also rely on setuptools' discovery methods 2026-03-04T19:42:47,619 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-04T19:42:47,620 instead of `find_packages(...)`/`find:`). 2026-03-04T19:42:47,621 You can read more about "package discovery" on setuptools documentation page: 2026-03-04T19:42:47,622 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-04T19:42:47,623 If you don't want 'pyboolnet.repository.xiao_wnt5a' to be distributed and are 2026-03-04T19:42:47,624 already explicitly excluding 'pyboolnet.repository.xiao_wnt5a' via 2026-03-04T19:42:47,625 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-04T19:42:47,626 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-04T19:42:47,627 combination with a more fine grained `package-data` configuration. 2026-03-04T19:42:47,628 You can read more about "package data files" on setuptools documentation page: 2026-03-04T19:42:47,630 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-04T19:42:47,632 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-04T19:42:47,633 even if it does not contain any `.py` files. 2026-03-04T19:42:47,634 On the other hand, currently there is no concept of package data 2026-03-04T19:42:47,634 directory, all directories are treated like packages. 2026-03-04T19:42:47,635 ******************************************************************************** 2026-03-04T19:42:47,636 !! 2026-03-04T19:42:47,637 check.warn(importable) 2026-03-04T19:42:47,638 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyboolnet.repository.zhang_tlgl' is absent from the `packages` configuration. 2026-03-04T19:42:47,639 !! 2026-03-04T19:42:47,640 ******************************************************************************** 2026-03-04T19:42:47,641 ############################ 2026-03-04T19:42:47,653 # Package would be ignored # 2026-03-04T19:42:47,663 ############################ 2026-03-04T19:42:47,672 Python recognizes 'pyboolnet.repository.zhang_tlgl' as an importable package[^1], 2026-03-04T19:42:47,673 but it is absent from setuptools' `packages` configuration. 2026-03-04T19:42:47,675 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-04T19:42:47,675 package, please make sure that 'pyboolnet.repository.zhang_tlgl' is explicitly added 2026-03-04T19:42:47,676 to the `packages` configuration field. 2026-03-04T19:42:47,677 Alternatively, you can also rely on setuptools' discovery methods 2026-03-04T19:42:47,677 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-04T19:42:47,678 instead of `find_packages(...)`/`find:`). 2026-03-04T19:42:47,679 You can read more about "package discovery" on setuptools documentation page: 2026-03-04T19:42:47,680 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-04T19:42:47,681 If you don't want 'pyboolnet.repository.zhang_tlgl' to be distributed and are 2026-03-04T19:42:47,681 already explicitly excluding 'pyboolnet.repository.zhang_tlgl' via 2026-03-04T19:42:47,682 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-04T19:42:47,682 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-04T19:42:47,683 combination with a more fine grained `package-data` configuration. 2026-03-04T19:42:47,683 You can read more about "package data files" on setuptools documentation page: 2026-03-04T19:42:47,684 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-04T19:42:47,686 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-04T19:42:47,686 even if it does not contain any `.py` files. 2026-03-04T19:42:47,687 On the other hand, currently there is no concept of package data 2026-03-04T19:42:47,687 directory, all directories are treated like packages. 2026-03-04T19:42:47,688 ******************************************************************************** 2026-03-04T19:42:47,689 !! 2026-03-04T19:42:47,689 check.warn(importable) 2026-03-04T19:42:47,690 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyboolnet.repository.zhang_tlgl_v2' is absent from the `packages` configuration. 2026-03-04T19:42:47,690 !! 2026-03-04T19:42:47,691 ******************************************************************************** 2026-03-04T19:42:47,692 ############################ 2026-03-04T19:42:47,692 # Package would be ignored # 2026-03-04T19:42:47,693 ############################ 2026-03-04T19:42:47,696 Python recognizes 'pyboolnet.repository.zhang_tlgl_v2' as an importable package[^1], 2026-03-04T19:42:47,698 but it is absent from setuptools' `packages` configuration. 2026-03-04T19:42:47,703 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-04T19:42:47,707 package, please make sure that 'pyboolnet.repository.zhang_tlgl_v2' is explicitly added 2026-03-04T19:42:47,710 to the `packages` configuration field. 2026-03-04T19:42:47,711 Alternatively, you can also rely on setuptools' discovery methods 2026-03-04T19:42:47,711 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-04T19:42:47,712 instead of `find_packages(...)`/`find:`). 2026-03-04T19:42:47,713 You can read more about "package discovery" on setuptools documentation page: 2026-03-04T19:42:47,714 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-04T19:42:47,715 If you don't want 'pyboolnet.repository.zhang_tlgl_v2' to be distributed and are 2026-03-04T19:42:47,716 already explicitly excluding 'pyboolnet.repository.zhang_tlgl_v2' via 2026-03-04T19:42:47,717 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-04T19:42:47,717 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-04T19:42:47,718 combination with a more fine grained `package-data` configuration. 2026-03-04T19:42:47,719 You can read more about "package data files" on setuptools documentation page: 2026-03-04T19:42:47,731 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-04T19:42:47,733 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-04T19:42:47,734 even if it does not contain any `.py` files. 2026-03-04T19:42:47,735 On the other hand, currently there is no concept of package data 2026-03-04T19:42:47,736 directory, all directories are treated like packages. 2026-03-04T19:42:47,737 ******************************************************************************** 2026-03-04T19:42:47,749 !! 2026-03-04T19:42:47,756 check.warn(importable) 2026-03-04T19:42:47,757 INFO copying pyboolnet/version.txt -> build/lib/pyboolnet 2026-03-04T19:42:47,758 INFO creating build/lib/pyboolnet/binaries/conda 2026-03-04T19:42:47,758 INFO copying pyboolnet/binaries/conda/settings.cfg -> build/lib/pyboolnet/binaries/conda 2026-03-04T19:42:47,759 INFO creating build/lib/pyboolnet/binaries/linux64 2026-03-04T19:42:47,759 INFO copying pyboolnet/binaries/linux64/settings.cfg -> build/lib/pyboolnet/binaries/linux64 2026-03-04T19:42:47,760 INFO creating build/lib/pyboolnet/binaries/linux64/BNetToPrime 2026-03-04T19:42:47,760 INFO copying pyboolnet/binaries/linux64/BNetToPrime/BNetToPrime_linux64 -> build/lib/pyboolnet/binaries/linux64/BNetToPrime 2026-03-04T19:42:47,760 INFO copying pyboolnet/binaries/linux64/BNetToPrime/CMakeLists.txt -> build/lib/pyboolnet/binaries/linux64/BNetToPrime 2026-03-04T19:42:47,761 INFO copying pyboolnet/binaries/linux64/BNetToPrime/README.md -> build/lib/pyboolnet/binaries/linux64/BNetToPrime 2026-03-04T19:42:47,761 INFO copying pyboolnet/binaries/linux64/BNetToPrime/main.cpp -> build/lib/pyboolnet/binaries/linux64/BNetToPrime 2026-03-04T19:42:47,762 INFO creating build/lib/pyboolnet/binaries/linux64/NuSMV-a 2026-03-04T19:42:47,762 INFO copying pyboolnet/binaries/linux64/NuSMV-a/NuSMVa_linux64 -> build/lib/pyboolnet/binaries/linux64/NuSMV-a 2026-03-04T19:42:47,763 INFO copying pyboolnet/binaries/linux64/NuSMV-a/libreadline.so.6 -> build/lib/pyboolnet/binaries/linux64/NuSMV-a 2026-03-04T19:42:47,763 INFO copying pyboolnet/binaries/linux64/NuSMV-a/ltl2smv -> build/lib/pyboolnet/binaries/linux64/NuSMV-a 2026-03-04T19:42:47,764 INFO creating build/lib/pyboolnet/binaries/linux64/clasp-3.1.1 2026-03-04T19:42:47,764 INFO copying pyboolnet/binaries/linux64/clasp-3.1.1/clasp-3.1.1-x86-linux -> build/lib/pyboolnet/binaries/linux64/clasp-3.1.1 2026-03-04T19:42:47,765 INFO creating build/lib/pyboolnet/binaries/linux64/eqntott 2026-03-04T19:42:47,766 INFO copying pyboolnet/binaries/linux64/eqntott/eqntott_linux64 -> build/lib/pyboolnet/binaries/linux64/eqntott 2026-03-04T19:42:47,766 INFO creating build/lib/pyboolnet/binaries/linux64/espresso 2026-03-04T19:42:47,766 INFO copying pyboolnet/binaries/linux64/espresso/espresso_linux64 -> build/lib/pyboolnet/binaries/linux64/espresso 2026-03-04T19:42:47,767 INFO creating build/lib/pyboolnet/binaries/linux64/gringo-4.4.0 2026-03-04T19:42:47,767 INFO copying pyboolnet/binaries/linux64/gringo-4.4.0/gringo -> build/lib/pyboolnet/binaries/linux64/gringo-4.4.0 2026-03-04T19:42:47,768 INFO creating build/lib/pyboolnet/binaries/mac64 2026-03-04T19:42:47,768 INFO copying pyboolnet/binaries/mac64/settings.cfg -> build/lib/pyboolnet/binaries/mac64 2026-03-04T19:42:47,769 INFO creating build/lib/pyboolnet/binaries/mac64/BNetToPrime 2026-03-04T19:42:47,769 INFO copying pyboolnet/binaries/mac64/BNetToPrime/BNetToPrime_mac64 -> build/lib/pyboolnet/binaries/mac64/BNetToPrime 2026-03-04T19:42:47,770 INFO creating build/lib/pyboolnet/binaries/mac64/NuSMV-a 2026-03-04T19:42:47,770 INFO copying pyboolnet/binaries/mac64/NuSMV-a/NuSMVa_mac64 -> build/lib/pyboolnet/binaries/mac64/NuSMV-a 2026-03-04T19:42:47,771 INFO copying pyboolnet/binaries/mac64/NuSMV-a/ltl2smv -> build/lib/pyboolnet/binaries/mac64/NuSMV-a 2026-03-04T19:42:47,771 INFO creating build/lib/pyboolnet/binaries/mac64/clasp-3.2.0 2026-03-04T19:42:47,772 INFO copying pyboolnet/binaries/mac64/clasp-3.2.0/CHANGES -> build/lib/pyboolnet/binaries/mac64/clasp-3.2.0 2026-03-04T19:42:47,772 INFO copying pyboolnet/binaries/mac64/clasp-3.2.0/COPYING -> build/lib/pyboolnet/binaries/mac64/clasp-3.2.0 2026-03-04T19:42:47,773 INFO copying pyboolnet/binaries/mac64/clasp-3.2.0/README -> build/lib/pyboolnet/binaries/mac64/clasp-3.2.0 2026-03-04T19:42:47,773 INFO copying pyboolnet/binaries/mac64/clasp-3.2.0/clasp-3.2.0_mac64 -> build/lib/pyboolnet/binaries/mac64/clasp-3.2.0 2026-03-04T19:42:47,774 INFO creating build/lib/pyboolnet/binaries/mac64/eqntott 2026-03-04T19:42:47,775 INFO copying pyboolnet/binaries/mac64/eqntott/eqntott_mac64 -> build/lib/pyboolnet/binaries/mac64/eqntott 2026-03-04T19:42:47,775 INFO creating build/lib/pyboolnet/binaries/mac64/espresso 2026-03-04T19:42:47,775 INFO copying pyboolnet/binaries/mac64/espresso/espresso_mac64 -> build/lib/pyboolnet/binaries/mac64/espresso 2026-03-04T19:42:47,776 INFO creating build/lib/pyboolnet/binaries/mac64/gringo-4.4.0 2026-03-04T19:42:47,776 INFO copying pyboolnet/binaries/mac64/gringo-4.4.0/CHANGES -> build/lib/pyboolnet/binaries/mac64/gringo-4.4.0 2026-03-04T19:42:47,777 INFO copying pyboolnet/binaries/mac64/gringo-4.4.0/COPYING -> build/lib/pyboolnet/binaries/mac64/gringo-4.4.0 2026-03-04T19:42:47,777 INFO copying pyboolnet/binaries/mac64/gringo-4.4.0/INSTALL -> build/lib/pyboolnet/binaries/mac64/gringo-4.4.0 2026-03-04T19:42:47,777 INFO copying pyboolnet/binaries/mac64/gringo-4.4.0/NOTES -> build/lib/pyboolnet/binaries/mac64/gringo-4.4.0 2026-03-04T19:42:47,778 INFO copying pyboolnet/binaries/mac64/gringo-4.4.0/README -> build/lib/pyboolnet/binaries/mac64/gringo-4.4.0 2026-03-04T19:42:47,778 INFO copying pyboolnet/binaries/mac64/gringo-4.4.0/gringo_mac64 -> build/lib/pyboolnet/binaries/mac64/gringo-4.4.0 2026-03-04T19:42:47,779 INFO creating build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie 2026-03-04T19:42:47,779 INFO copying pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie/README -> build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie 2026-03-04T19:42:47,780 INFO copying pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie/gbie1.lp -> build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie 2026-03-04T19:42:47,780 INFO copying pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie/gbie2.lp -> build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie 2026-03-04T19:42:47,781 INFO creating build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie/instances 2026-03-04T19:42:47,781 INFO copying pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie/instances/sat_01.lp -> build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie/instances 2026-03-04T19:42:47,782 INFO copying pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie/instances/sat_02.lp -> build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie/instances 2026-03-04T19:42:47,782 INFO copying pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie/instances/sat_03.lp -> build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie/instances 2026-03-04T19:42:47,783 INFO copying pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie/instances/unsat_01.lp -> build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie/instances 2026-03-04T19:42:47,783 INFO copying pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie/instances/unsat_02.lp -> build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie/instances 2026-03-04T19:42:47,784 INFO creating build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/examples/queens 2026-03-04T19:42:47,784 INFO copying pyboolnet/binaries/mac64/gringo-4.4.0/examples/queens/README -> build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/examples/queens 2026-03-04T19:42:47,785 INFO copying pyboolnet/binaries/mac64/gringo-4.4.0/examples/queens/queens1.lp -> build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/examples/queens 2026-03-04T19:42:47,785 INFO copying pyboolnet/binaries/mac64/gringo-4.4.0/examples/queens/queens2.lp -> build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/examples/queens 2026-03-04T19:42:47,786 INFO creating build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/examples/rec-cond 2026-03-04T19:42:47,786 INFO copying pyboolnet/binaries/mac64/gringo-4.4.0/examples/rec-cond/README -> build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/examples/rec-cond 2026-03-04T19:42:47,787 INFO copying pyboolnet/binaries/mac64/gringo-4.4.0/examples/rec-cond/encoding.lp -> build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/examples/rec-cond 2026-03-04T19:42:47,788 INFO copying pyboolnet/binaries/mac64/gringo-4.4.0/examples/rec-cond/instance.lp -> build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/examples/rec-cond 2026-03-04T19:42:47,788 INFO creating build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/examples/toh 2026-03-04T19:42:47,789 INFO copying pyboolnet/binaries/mac64/gringo-4.4.0/examples/toh/README -> build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/examples/toh 2026-03-04T19:42:47,789 INFO copying pyboolnet/binaries/mac64/gringo-4.4.0/examples/toh/tohE.lp -> build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/examples/toh 2026-03-04T19:42:47,789 INFO copying pyboolnet/binaries/mac64/gringo-4.4.0/examples/toh/tohI.lp -> build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/examples/toh 2026-03-04T19:42:47,790 INFO creating build/lib/pyboolnet/binaries/win64 2026-03-04T19:42:47,790 INFO copying pyboolnet/binaries/win64/settings.cfg -> build/lib/pyboolnet/binaries/win64 2026-03-04T19:42:47,791 INFO creating build/lib/pyboolnet/binaries/win64/BNetToPrime 2026-03-04T19:42:47,791 INFO copying pyboolnet/binaries/win64/BNetToPrime/BNetToPrime_win64.exe -> build/lib/pyboolnet/binaries/win64/BNetToPrime 2026-03-04T19:42:47,799 INFO copying pyboolnet/binaries/win64/BNetToPrime/libgcc_s_dw2-1.dll -> build/lib/pyboolnet/binaries/win64/BNetToPrime 2026-03-04T19:42:47,803 INFO copying pyboolnet/binaries/win64/BNetToPrime/libstdc++-6.dll -> build/lib/pyboolnet/binaries/win64/BNetToPrime 2026-03-04T19:42:47,883 INFO creating build/lib/pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:47,885 INFO copying pyboolnet/binaries/win64/NuSMV-a/NuSMVa_win32.exe -> build/lib/pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:48,060 INFO copying pyboolnet/binaries/win64/NuSMV-a/libatomic-1.dll -> build/lib/pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:48,063 INFO copying pyboolnet/binaries/win64/NuSMV-a/libcharset-1.dll -> build/lib/pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:48,068 INFO copying pyboolnet/binaries/win64/NuSMV-a/libexpat-1.dll -> build/lib/pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:48,082 INFO copying pyboolnet/binaries/win64/NuSMV-a/libgcc_s_dw2-1.dll -> build/lib/pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:48,086 INFO copying pyboolnet/binaries/win64/NuSMV-a/libgettextlib-0-18-3.dll -> build/lib/pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:48,153 INFO copying pyboolnet/binaries/win64/NuSMV-a/libgettextpo-0.dll -> build/lib/pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:48,175 INFO copying pyboolnet/binaries/win64/NuSMV-a/libgettextsrc-0-18-3.dll -> build/lib/pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:48,186 INFO copying pyboolnet/binaries/win64/NuSMV-a/libgmp-10.dll -> build/lib/pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:48,239 INFO copying pyboolnet/binaries/win64/NuSMV-a/libgmpxx-4.dll -> build/lib/pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:48,243 INFO copying pyboolnet/binaries/win64/NuSMV-a/libgomp-1.dll -> build/lib/pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:48,249 INFO copying pyboolnet/binaries/win64/NuSMV-a/libiconv-2.dll -> build/lib/pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:48,319 INFO copying pyboolnet/binaries/win64/NuSMV-a/libintl-8.dll -> build/lib/pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:48,340 INFO copying pyboolnet/binaries/win64/NuSMV-a/libltdl-7.dll -> build/lib/pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:48,343 INFO copying pyboolnet/binaries/win64/NuSMV-a/libmpc-3.dll -> build/lib/pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:48,349 INFO copying pyboolnet/binaries/win64/NuSMV-a/libmpfr-4.dll -> build/lib/pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:48,366 INFO copying pyboolnet/binaries/win64/NuSMV-a/libquadmath-0.dll -> build/lib/pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:48,379 INFO copying pyboolnet/binaries/win64/NuSMV-a/libssp-0.dll -> build/lib/pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:48,381 INFO copying pyboolnet/binaries/win64/NuSMV-a/libstdc++-6.dll -> build/lib/pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:48,446 INFO copying pyboolnet/binaries/win64/NuSMV-a/mingwm10.dll -> build/lib/pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:48,448 INFO copying pyboolnet/binaries/win64/NuSMV-a/pthreadGC-3.dll -> build/lib/pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:48,455 INFO copying pyboolnet/binaries/win64/NuSMV-a/zlib1.dll -> build/lib/pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:48,459 INFO creating build/lib/pyboolnet/binaries/win64/clasp-3.1.1 2026-03-04T19:42:48,460 INFO copying pyboolnet/binaries/win64/clasp-3.1.1/CHANGES -> build/lib/pyboolnet/binaries/win64/clasp-3.1.1 2026-03-04T19:42:48,463 INFO copying pyboolnet/binaries/win64/clasp-3.1.1/COPYING -> build/lib/pyboolnet/binaries/win64/clasp-3.1.1 2026-03-04T19:42:48,466 INFO copying pyboolnet/binaries/win64/clasp-3.1.1/README -> build/lib/pyboolnet/binaries/win64/clasp-3.1.1 2026-03-04T19:42:48,469 INFO copying pyboolnet/binaries/win64/clasp-3.1.1/clasp-3.1.1_win64.exe -> build/lib/pyboolnet/binaries/win64/clasp-3.1.1 2026-03-04T19:42:48,516 INFO creating build/lib/pyboolnet/binaries/win64/eqntott 2026-03-04T19:42:48,517 INFO copying pyboolnet/binaries/win64/eqntott/eqntott_win64.exe -> build/lib/pyboolnet/binaries/win64/eqntott 2026-03-04T19:42:48,571 INFO creating build/lib/pyboolnet/binaries/win64/espresso 2026-03-04T19:42:48,572 INFO copying pyboolnet/binaries/win64/espresso/espresso_win64.exe -> build/lib/pyboolnet/binaries/win64/espresso 2026-03-04T19:42:48,600 INFO creating build/lib/pyboolnet/binaries/win64/gringo-4.4.0 2026-03-04T19:42:48,601 INFO copying pyboolnet/binaries/win64/gringo-4.4.0/CHANGES -> build/lib/pyboolnet/binaries/win64/gringo-4.4.0 2026-03-04T19:42:48,603 INFO copying pyboolnet/binaries/win64/gringo-4.4.0/COPYING -> build/lib/pyboolnet/binaries/win64/gringo-4.4.0 2026-03-04T19:42:48,606 INFO copying pyboolnet/binaries/win64/gringo-4.4.0/INSTALL -> build/lib/pyboolnet/binaries/win64/gringo-4.4.0 2026-03-04T19:42:48,609 INFO copying pyboolnet/binaries/win64/gringo-4.4.0/NOTES -> build/lib/pyboolnet/binaries/win64/gringo-4.4.0 2026-03-04T19:42:48,612 INFO copying pyboolnet/binaries/win64/gringo-4.4.0/README -> build/lib/pyboolnet/binaries/win64/gringo-4.4.0 2026-03-04T19:42:48,614 INFO copying pyboolnet/binaries/win64/gringo-4.4.0/gringo_win64.exe -> build/lib/pyboolnet/binaries/win64/gringo-4.4.0 2026-03-04T19:42:48,706 INFO creating build/lib/pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie 2026-03-04T19:42:48,708 INFO copying pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie/README -> build/lib/pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie 2026-03-04T19:42:48,710 INFO copying pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie/gbie1.lp -> build/lib/pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie 2026-03-04T19:42:48,712 INFO copying pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie/gbie2.lp -> build/lib/pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie 2026-03-04T19:42:48,714 INFO creating build/lib/pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie/instances 2026-03-04T19:42:48,715 INFO copying pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie/instances/sat_01.lp -> build/lib/pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie/instances 2026-03-04T19:42:48,718 INFO copying pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie/instances/sat_02.lp -> build/lib/pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie/instances 2026-03-04T19:42:48,742 INFO copying pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie/instances/sat_03.lp -> build/lib/pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie/instances 2026-03-04T19:42:48,764 INFO copying pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie/instances/unsat_01.lp -> build/lib/pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie/instances 2026-03-04T19:42:48,766 INFO copying pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie/instances/unsat_02.lp -> build/lib/pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie/instances 2026-03-04T19:42:48,795 INFO creating build/lib/pyboolnet/binaries/win64/gringo-4.4.0/examples/queens 2026-03-04T19:42:48,796 INFO copying pyboolnet/binaries/win64/gringo-4.4.0/examples/queens/README -> build/lib/pyboolnet/binaries/win64/gringo-4.4.0/examples/queens 2026-03-04T19:42:48,798 INFO copying pyboolnet/binaries/win64/gringo-4.4.0/examples/queens/queens1.lp -> build/lib/pyboolnet/binaries/win64/gringo-4.4.0/examples/queens 2026-03-04T19:42:48,800 INFO copying pyboolnet/binaries/win64/gringo-4.4.0/examples/queens/queens2.lp -> build/lib/pyboolnet/binaries/win64/gringo-4.4.0/examples/queens 2026-03-04T19:42:48,802 INFO creating build/lib/pyboolnet/binaries/win64/gringo-4.4.0/examples/rec-cond 2026-03-04T19:42:48,803 INFO copying pyboolnet/binaries/win64/gringo-4.4.0/examples/rec-cond/README -> build/lib/pyboolnet/binaries/win64/gringo-4.4.0/examples/rec-cond 2026-03-04T19:42:48,806 INFO copying pyboolnet/binaries/win64/gringo-4.4.0/examples/rec-cond/encoding.lp -> build/lib/pyboolnet/binaries/win64/gringo-4.4.0/examples/rec-cond 2026-03-04T19:42:48,808 INFO copying pyboolnet/binaries/win64/gringo-4.4.0/examples/rec-cond/instance.lp -> build/lib/pyboolnet/binaries/win64/gringo-4.4.0/examples/rec-cond 2026-03-04T19:42:48,810 INFO creating build/lib/pyboolnet/binaries/win64/gringo-4.4.0/examples/toh 2026-03-04T19:42:48,811 INFO copying pyboolnet/binaries/win64/gringo-4.4.0/examples/toh/README -> build/lib/pyboolnet/binaries/win64/gringo-4.4.0/examples/toh 2026-03-04T19:42:48,813 INFO copying pyboolnet/binaries/win64/gringo-4.4.0/examples/toh/tohE.lp -> build/lib/pyboolnet/binaries/win64/gringo-4.4.0/examples/toh 2026-03-04T19:42:48,815 INFO copying pyboolnet/binaries/win64/gringo-4.4.0/examples/toh/tohI.lp -> build/lib/pyboolnet/binaries/win64/gringo-4.4.0/examples/toh 2026-03-04T19:42:48,817 INFO copying pyboolnet/repository/README.md -> build/lib/pyboolnet/repository 2026-03-04T19:42:48,820 INFO creating build/lib/pyboolnet/repository/davidich_yeast 2026-03-04T19:42:48,821 INFO copying pyboolnet/repository/davidich_yeast/davidich_yeast_commitment_pie.pdf -> build/lib/pyboolnet/repository/davidich_yeast 2026-03-04T19:42:48,824 INFO copying pyboolnet/repository/davidich_yeast/davidich_yeast.bnet -> build/lib/pyboolnet/repository/davidich_yeast 2026-03-04T19:42:48,827 INFO copying pyboolnet/repository/davidich_yeast/davidich_yeast_attractors.md -> build/lib/pyboolnet/repository/davidich_yeast 2026-03-04T19:42:48,829 INFO copying pyboolnet/repository/davidich_yeast/davidich_yeast_all_basins.pdf -> build/lib/pyboolnet/repository/davidich_yeast 2026-03-04T19:42:48,832 INFO copying pyboolnet/repository/davidich_yeast/davidich_yeast_strong_basins.pdf -> build/lib/pyboolnet/repository/davidich_yeast 2026-03-04T19:42:48,835 INFO copying pyboolnet/repository/davidich_yeast/davidich_yeast_igraph.pdf -> build/lib/pyboolnet/repository/davidich_yeast 2026-03-04T19:42:48,838 INFO copying pyboolnet/repository/davidich_yeast/davidich_yeast_commitment_diagram.pdf -> build/lib/pyboolnet/repository/davidich_yeast 2026-03-04T19:42:48,841 INFO creating build/lib/pyboolnet/repository/arellano_rootstem 2026-03-04T19:42:48,842 INFO copying pyboolnet/repository/arellano_rootstem/arellano_rootstem_attractors.md -> build/lib/pyboolnet/repository/arellano_rootstem 2026-03-04T19:42:48,844 INFO copying pyboolnet/repository/arellano_rootstem/arellano_rootstem_strong_basins.pdf -> build/lib/pyboolnet/repository/arellano_rootstem 2026-03-04T19:42:48,847 INFO copying pyboolnet/repository/arellano_rootstem/arellano_rootstem.bnet -> build/lib/pyboolnet/repository/arellano_rootstem 2026-03-04T19:42:48,849 INFO copying pyboolnet/repository/arellano_rootstem/arellano_rootstem_all_basins.pdf -> build/lib/pyboolnet/repository/arellano_rootstem 2026-03-04T19:42:48,852 INFO copying pyboolnet/repository/arellano_rootstem/arellano_rootstem_commitment_diagram.pdf -> build/lib/pyboolnet/repository/arellano_rootstem 2026-03-04T19:42:48,855 INFO copying pyboolnet/repository/arellano_rootstem/arellano_rootstem_commitment_pie.pdf -> build/lib/pyboolnet/repository/arellano_rootstem 2026-03-04T19:42:48,857 INFO copying pyboolnet/repository/arellano_rootstem/arellano_rootstem_igraph.pdf -> build/lib/pyboolnet/repository/arellano_rootstem 2026-03-04T19:42:48,861 INFO creating build/lib/pyboolnet/repository/selvaggio_emt 2026-03-04T19:42:48,862 INFO copying pyboolnet/repository/selvaggio_emt/selvaggio_emt.bnet -> build/lib/pyboolnet/repository/selvaggio_emt 2026-03-04T19:42:48,864 INFO creating build/lib/pyboolnet/repository/remy_tumorigenesis 2026-03-04T19:42:48,866 INFO copying pyboolnet/repository/remy_tumorigenesis/remy_tumorigenesis.bnet -> build/lib/pyboolnet/repository/remy_tumorigenesis 2026-03-04T19:42:48,868 INFO copying pyboolnet/repository/remy_tumorigenesis/remy_tumorigenesis_myversion.bnet -> build/lib/pyboolnet/repository/remy_tumorigenesis 2026-03-04T19:42:48,872 INFO creating build/lib/pyboolnet/repository/raf 2026-03-04T19:42:48,873 INFO copying pyboolnet/repository/raf/raf_igraph.pdf -> build/lib/pyboolnet/repository/raf 2026-03-04T19:42:48,875 INFO copying pyboolnet/repository/raf/raf_attractors.md -> build/lib/pyboolnet/repository/raf 2026-03-04T19:42:48,877 INFO copying pyboolnet/repository/raf/raf_commitment_diagram.pdf -> build/lib/pyboolnet/repository/raf 2026-03-04T19:42:48,881 INFO copying pyboolnet/repository/raf/raf_all_basins.pdf -> build/lib/pyboolnet/repository/raf 2026-03-04T19:42:48,884 INFO copying pyboolnet/repository/raf/raf.bnet -> build/lib/pyboolnet/repository/raf 2026-03-04T19:42:48,886 INFO copying pyboolnet/repository/raf/raf_commitment_pie.pdf -> build/lib/pyboolnet/repository/raf 2026-03-04T19:42:48,889 INFO copying pyboolnet/repository/raf/raf_strong_basins.pdf -> build/lib/pyboolnet/repository/raf 2026-03-04T19:42:48,892 INFO creating build/lib/pyboolnet/repository/n6s1c2 2026-03-04T19:42:48,893 INFO copying pyboolnet/repository/n6s1c2/n6s1c2_commitment_pie.pdf -> build/lib/pyboolnet/repository/n6s1c2 2026-03-04T19:42:48,896 INFO copying pyboolnet/repository/n6s1c2/n6s1c2.bnet -> build/lib/pyboolnet/repository/n6s1c2 2026-03-04T19:42:48,899 INFO copying pyboolnet/repository/n6s1c2/n6s1c2_commitment_diagram.pdf -> build/lib/pyboolnet/repository/n6s1c2 2026-03-04T19:42:48,902 INFO copying pyboolnet/repository/n6s1c2/n6s1c2_strong_basins.pdf -> build/lib/pyboolnet/repository/n6s1c2 2026-03-04T19:42:48,905 INFO copying pyboolnet/repository/n6s1c2/n6s1c2_all_basins.pdf -> build/lib/pyboolnet/repository/n6s1c2 2026-03-04T19:42:48,908 INFO copying pyboolnet/repository/n6s1c2/n6s1c2_attractors.md -> build/lib/pyboolnet/repository/n6s1c2 2026-03-04T19:42:48,910 INFO copying pyboolnet/repository/n6s1c2/n6s1c2_igraph.pdf -> build/lib/pyboolnet/repository/n6s1c2 2026-03-04T19:42:48,913 INFO creating build/lib/pyboolnet/repository/n3s1c1a 2026-03-04T19:42:48,915 INFO copying pyboolnet/repository/n3s1c1a/n3s1c1a_strong_basins.pdf -> build/lib/pyboolnet/repository/n3s1c1a 2026-03-04T19:42:48,918 INFO copying pyboolnet/repository/n3s1c1a/n3s1c1a.bnet -> build/lib/pyboolnet/repository/n3s1c1a 2026-03-04T19:42:48,921 INFO copying pyboolnet/repository/n3s1c1a/n3s1c1a_attractors.md -> build/lib/pyboolnet/repository/n3s1c1a 2026-03-04T19:42:48,923 INFO copying pyboolnet/repository/n3s1c1a/n3s1c1a_igraph.pdf -> build/lib/pyboolnet/repository/n3s1c1a 2026-03-04T19:42:48,926 INFO copying pyboolnet/repository/n3s1c1a/n3s1c1a_commitment_pie.pdf -> build/lib/pyboolnet/repository/n3s1c1a 2026-03-04T19:42:48,929 INFO copying pyboolnet/repository/n3s1c1a/n3s1c1a_all_basins.pdf -> build/lib/pyboolnet/repository/n3s1c1a 2026-03-04T19:42:48,932 INFO copying pyboolnet/repository/n3s1c1a/n3s1c1a_commitment_diagram.pdf -> build/lib/pyboolnet/repository/n3s1c1a 2026-03-04T19:42:48,936 INFO creating build/lib/pyboolnet/repository/klamt_tcr 2026-03-04T19:42:48,937 INFO copying pyboolnet/repository/klamt_tcr/klamt_tcr_attractors.md -> build/lib/pyboolnet/repository/klamt_tcr 2026-03-04T19:42:48,940 INFO copying pyboolnet/repository/klamt_tcr/klamt_tcr.bnet -> build/lib/pyboolnet/repository/klamt_tcr 2026-03-04T19:42:48,943 INFO copying pyboolnet/repository/klamt_tcr/klamt_tcr_igraph.pdf -> build/lib/pyboolnet/repository/klamt_tcr 2026-03-04T19:42:48,946 INFO creating build/lib/pyboolnet/repository/n7s3 2026-03-04T19:42:48,947 INFO copying pyboolnet/repository/n7s3/n7s3_strong_basins.pdf -> build/lib/pyboolnet/repository/n7s3 2026-03-04T19:42:48,950 INFO copying pyboolnet/repository/n7s3/n7s3_attractors.md -> build/lib/pyboolnet/repository/n7s3 2026-03-04T19:42:48,953 INFO copying pyboolnet/repository/n7s3/n7s3_commitment_pie.pdf -> build/lib/pyboolnet/repository/n7s3 2026-03-04T19:42:48,955 INFO copying pyboolnet/repository/n7s3/n7s3.bnet -> build/lib/pyboolnet/repository/n7s3 2026-03-04T19:42:48,958 INFO copying pyboolnet/repository/n7s3/n7s3_commitment_diagram.pdf -> build/lib/pyboolnet/repository/n7s3 2026-03-04T19:42:48,962 INFO copying pyboolnet/repository/n7s3/n7s3_all_basins.pdf -> build/lib/pyboolnet/repository/n7s3 2026-03-04T19:42:48,966 INFO copying pyboolnet/repository/n7s3/n7s3_igraph.pdf -> build/lib/pyboolnet/repository/n7s3 2026-03-04T19:42:48,969 INFO creating build/lib/pyboolnet/repository/n3s1c1b 2026-03-04T19:42:48,970 INFO copying pyboolnet/repository/n3s1c1b/n3s1c1b_igraph.pdf -> build/lib/pyboolnet/repository/n3s1c1b 2026-03-04T19:42:48,973 INFO copying pyboolnet/repository/n3s1c1b/n3s1c1b_commitment_diagram.pdf -> build/lib/pyboolnet/repository/n3s1c1b 2026-03-04T19:42:48,976 INFO copying pyboolnet/repository/n3s1c1b/n3s1c1b_commitment_pie.pdf -> build/lib/pyboolnet/repository/n3s1c1b 2026-03-04T19:42:48,979 INFO copying pyboolnet/repository/n3s1c1b/n3s1c1b_all_basins.pdf -> build/lib/pyboolnet/repository/n3s1c1b 2026-03-04T19:42:48,982 INFO copying pyboolnet/repository/n3s1c1b/n3s1c1b.bnet -> build/lib/pyboolnet/repository/n3s1c1b 2026-03-04T19:42:48,984 INFO copying pyboolnet/repository/n3s1c1b/n3s1c1b_strong_basins.pdf -> build/lib/pyboolnet/repository/n3s1c1b 2026-03-04T19:42:48,987 INFO copying pyboolnet/repository/n3s1c1b/n3s1c1b_attractors.md -> build/lib/pyboolnet/repository/n3s1c1b 2026-03-04T19:42:48,989 INFO creating build/lib/pyboolnet/repository/n5s3 2026-03-04T19:42:48,990 INFO copying pyboolnet/repository/n5s3/n5s3_attractors.md -> build/lib/pyboolnet/repository/n5s3 2026-03-04T19:42:48,993 INFO copying pyboolnet/repository/n5s3/n5s3_igraph.pdf -> build/lib/pyboolnet/repository/n5s3 2026-03-04T19:42:48,995 INFO copying pyboolnet/repository/n5s3/n5s3_commitment_pie.pdf -> build/lib/pyboolnet/repository/n5s3 2026-03-04T19:42:48,998 INFO copying pyboolnet/repository/n5s3/n5s3.bnet -> build/lib/pyboolnet/repository/n5s3 2026-03-04T19:42:49,001 INFO copying pyboolnet/repository/n5s3/n5s3_strong_basins.pdf -> build/lib/pyboolnet/repository/n5s3 2026-03-04T19:42:49,004 INFO copying pyboolnet/repository/n5s3/n5s3_commitment_diagram.pdf -> build/lib/pyboolnet/repository/n5s3 2026-03-04T19:42:49,007 INFO copying pyboolnet/repository/n5s3/n5s3_all_basins.pdf -> build/lib/pyboolnet/repository/n5s3 2026-03-04T19:42:49,010 INFO creating build/lib/pyboolnet/repository/jaoude_thdiff 2026-03-04T19:42:49,011 INFO copying pyboolnet/repository/jaoude_thdiff/jaoude_thdiff_igraph.pdf -> build/lib/pyboolnet/repository/jaoude_thdiff 2026-03-04T19:42:49,015 INFO copying pyboolnet/repository/jaoude_thdiff/jaoude_thdiff.bnet -> build/lib/pyboolnet/repository/jaoude_thdiff 2026-03-04T19:42:49,017 INFO creating build/lib/pyboolnet/repository/dinwoodie_life 2026-03-04T19:42:49,019 INFO copying pyboolnet/repository/dinwoodie_life/dinwoodie_life_igraph.pdf -> build/lib/pyboolnet/repository/dinwoodie_life 2026-03-04T19:42:49,022 INFO copying pyboolnet/repository/dinwoodie_life/dinwoodie_life_commitment_diagram.pdf -> build/lib/pyboolnet/repository/dinwoodie_life 2026-03-04T19:42:49,025 INFO copying pyboolnet/repository/dinwoodie_life/dinwoodie_life_strong_basins.pdf -> build/lib/pyboolnet/repository/dinwoodie_life 2026-03-04T19:42:49,028 INFO copying pyboolnet/repository/dinwoodie_life/dinwoodie_life.bnet -> build/lib/pyboolnet/repository/dinwoodie_life 2026-03-04T19:42:49,031 INFO copying pyboolnet/repository/dinwoodie_life/dinwoodie_life_all_basins.pdf -> build/lib/pyboolnet/repository/dinwoodie_life 2026-03-04T19:42:49,037 INFO copying pyboolnet/repository/dinwoodie_life/dinwoodie_life_attractors.md -> build/lib/pyboolnet/repository/dinwoodie_life 2026-03-04T19:42:49,042 INFO copying pyboolnet/repository/dinwoodie_life/dinwoodie_life_commitment_pie.pdf -> build/lib/pyboolnet/repository/dinwoodie_life 2026-03-04T19:42:49,045 INFO creating build/lib/pyboolnet/repository/irons_yeast 2026-03-04T19:42:49,046 INFO copying pyboolnet/repository/irons_yeast/irons_yeast_all_basins.pdf -> build/lib/pyboolnet/repository/irons_yeast 2026-03-04T19:42:49,049 INFO copying pyboolnet/repository/irons_yeast/irons_yeast_attractors.md -> build/lib/pyboolnet/repository/irons_yeast 2026-03-04T19:42:49,051 INFO copying pyboolnet/repository/irons_yeast/irons_yeast_strong_basins.pdf -> build/lib/pyboolnet/repository/irons_yeast 2026-03-04T19:42:49,053 INFO copying pyboolnet/repository/irons_yeast/irons_yeast_commitment_diagram.pdf -> build/lib/pyboolnet/repository/irons_yeast 2026-03-04T19:42:49,056 INFO copying pyboolnet/repository/irons_yeast/irons_yeast.bnet -> build/lib/pyboolnet/repository/irons_yeast 2026-03-04T19:42:49,058 INFO copying pyboolnet/repository/irons_yeast/irons_yeast_commitment_pie.pdf -> build/lib/pyboolnet/repository/irons_yeast 2026-03-04T19:42:49,060 INFO copying pyboolnet/repository/irons_yeast/irons_yeast_igraph.pdf -> build/lib/pyboolnet/repository/irons_yeast 2026-03-04T19:42:49,063 INFO creating build/lib/pyboolnet/repository/multivalued 2026-03-04T19:42:49,064 INFO copying pyboolnet/repository/multivalued/multivalued.bnet -> build/lib/pyboolnet/repository/multivalued 2026-03-04T19:42:49,066 INFO creating build/lib/pyboolnet/repository/faure_cellcycle 2026-03-04T19:42:49,067 INFO copying pyboolnet/repository/faure_cellcycle/faure_cellcycle_strong_basins.pdf -> build/lib/pyboolnet/repository/faure_cellcycle 2026-03-04T19:42:49,070 INFO copying pyboolnet/repository/faure_cellcycle/faure_cellcycle_attractors.md -> build/lib/pyboolnet/repository/faure_cellcycle 2026-03-04T19:42:49,072 INFO copying pyboolnet/repository/faure_cellcycle/faure_cellcycle_all_basins.pdf -> build/lib/pyboolnet/repository/faure_cellcycle 2026-03-04T19:42:49,074 INFO copying pyboolnet/repository/faure_cellcycle/faure_cellcycle_igraph.pdf -> build/lib/pyboolnet/repository/faure_cellcycle 2026-03-04T19:42:49,077 INFO copying pyboolnet/repository/faure_cellcycle/faure_cellcycle_commitment_pie.pdf -> build/lib/pyboolnet/repository/faure_cellcycle 2026-03-04T19:42:49,080 INFO copying pyboolnet/repository/faure_cellcycle/faure_cellcycle.bnet -> build/lib/pyboolnet/repository/faure_cellcycle 2026-03-04T19:42:49,083 INFO copying pyboolnet/repository/faure_cellcycle/faure_cellcycle_commitment_diagram.pdf -> build/lib/pyboolnet/repository/faure_cellcycle 2026-03-04T19:42:49,086 INFO creating build/lib/pyboolnet/repository/tournier_apoptosis 2026-03-04T19:42:49,087 INFO copying pyboolnet/repository/tournier_apoptosis/tournier_apoptosis_attrs_mixed.json -> build/lib/pyboolnet/repository/tournier_apoptosis 2026-03-04T19:42:49,090 INFO copying pyboolnet/repository/tournier_apoptosis/tournier_apoptosis_all_basins.pdf -> build/lib/pyboolnet/repository/tournier_apoptosis 2026-03-04T19:42:49,093 INFO copying pyboolnet/repository/tournier_apoptosis/tournier_apoptosis_attrs_async.json -> build/lib/pyboolnet/repository/tournier_apoptosis 2026-03-04T19:42:49,096 INFO copying pyboolnet/repository/tournier_apoptosis/tournier_apoptosis_igraph.pdf -> build/lib/pyboolnet/repository/tournier_apoptosis 2026-03-04T19:42:49,100 INFO copying pyboolnet/repository/tournier_apoptosis/tournier_apoptosis_commitment_pie.pdf -> build/lib/pyboolnet/repository/tournier_apoptosis 2026-03-04T19:42:49,103 INFO copying pyboolnet/repository/tournier_apoptosis/tournier_apoptosis_attractors.md -> build/lib/pyboolnet/repository/tournier_apoptosis 2026-03-04T19:42:49,106 INFO copying pyboolnet/repository/tournier_apoptosis/tournier_apoptosis_strong_basins.pdf -> build/lib/pyboolnet/repository/tournier_apoptosis 2026-03-04T19:42:49,109 INFO copying pyboolnet/repository/tournier_apoptosis/tournier_apoptosis_attrs_sync.json -> build/lib/pyboolnet/repository/tournier_apoptosis 2026-03-04T19:42:49,112 INFO copying pyboolnet/repository/tournier_apoptosis/tournier_apoptosis.bnet -> build/lib/pyboolnet/repository/tournier_apoptosis 2026-03-04T19:42:49,115 INFO copying pyboolnet/repository/tournier_apoptosis/tournier_apoptosis_commitment_diagram.pdf -> build/lib/pyboolnet/repository/tournier_apoptosis 2026-03-04T19:42:49,118 INFO creating build/lib/pyboolnet/repository/randomnet_n15k3 2026-03-04T19:42:49,119 INFO copying pyboolnet/repository/randomnet_n15k3/randomnet_n15k3_commitment_diagram.pdf -> build/lib/pyboolnet/repository/randomnet_n15k3 2026-03-04T19:42:49,123 INFO copying pyboolnet/repository/randomnet_n15k3/randomnet_n15k3_attractors.md -> build/lib/pyboolnet/repository/randomnet_n15k3 2026-03-04T19:42:49,125 INFO copying pyboolnet/repository/randomnet_n15k3/randomnet_n15k3_strong_basins.pdf -> build/lib/pyboolnet/repository/randomnet_n15k3 2026-03-04T19:42:49,129 INFO copying pyboolnet/repository/randomnet_n15k3/randomnet_n15k3_commitment_pie.pdf -> build/lib/pyboolnet/repository/randomnet_n15k3 2026-03-04T19:42:49,132 INFO copying pyboolnet/repository/randomnet_n15k3/randomnet_n15k3.bnet -> build/lib/pyboolnet/repository/randomnet_n15k3 2026-03-04T19:42:49,135 INFO copying pyboolnet/repository/randomnet_n15k3/randomnet_n15k3_igraph.pdf -> build/lib/pyboolnet/repository/randomnet_n15k3 2026-03-04T19:42:49,138 INFO copying pyboolnet/repository/randomnet_n15k3/randomnet_n15k3_all_basins.pdf -> build/lib/pyboolnet/repository/randomnet_n15k3 2026-03-04T19:42:49,141 INFO creating build/lib/pyboolnet/repository/grieco_mapk 2026-03-04T19:42:49,143 INFO copying pyboolnet/repository/grieco_mapk/grieco_mapk_igraph.pdf -> build/lib/pyboolnet/repository/grieco_mapk 2026-03-04T19:42:49,147 INFO copying pyboolnet/repository/grieco_mapk/grieco_mapk.bnet -> build/lib/pyboolnet/repository/grieco_mapk 2026-03-04T19:42:49,149 INFO copying pyboolnet/repository/grieco_mapk/grieco_mapk_attrs_sync.json -> build/lib/pyboolnet/repository/grieco_mapk 2026-03-04T19:42:49,155 INFO copying pyboolnet/repository/grieco_mapk/grieco_mapk_attrs_async.json -> build/lib/pyboolnet/repository/grieco_mapk 2026-03-04T19:42:49,160 INFO creating build/lib/pyboolnet/repository/krumsiek_myeloid 2026-03-04T19:42:49,162 INFO copying pyboolnet/repository/krumsiek_myeloid/krumsiek_myeloid.bnet -> build/lib/pyboolnet/repository/krumsiek_myeloid 2026-03-04T19:42:49,165 INFO creating build/lib/pyboolnet/repository/randomnet_n7k3 2026-03-04T19:42:49,166 INFO copying pyboolnet/repository/randomnet_n7k3/randomnet_n7k3_igraph.pdf -> build/lib/pyboolnet/repository/randomnet_n7k3 2026-03-04T19:42:49,170 INFO copying pyboolnet/repository/randomnet_n7k3/randomnet_n7k3_commitment_pie.pdf -> build/lib/pyboolnet/repository/randomnet_n7k3 2026-03-04T19:42:49,174 INFO copying pyboolnet/repository/randomnet_n7k3/randomnet_n7k3_strong_basins.pdf -> build/lib/pyboolnet/repository/randomnet_n7k3 2026-03-04T19:42:49,177 INFO copying pyboolnet/repository/randomnet_n7k3/randomnet_n7k3_attractors.md -> build/lib/pyboolnet/repository/randomnet_n7k3 2026-03-04T19:42:49,180 INFO copying pyboolnet/repository/randomnet_n7k3/randomnet_n7k3_commitment_diagram.pdf -> build/lib/pyboolnet/repository/randomnet_n7k3 2026-03-04T19:42:49,184 INFO copying pyboolnet/repository/randomnet_n7k3/randomnet_n7k3_all_basins.pdf -> build/lib/pyboolnet/repository/randomnet_n7k3 2026-03-04T19:42:49,187 INFO copying pyboolnet/repository/randomnet_n7k3/randomnet_n7k3.bnet -> build/lib/pyboolnet/repository/randomnet_n7k3 2026-03-04T19:42:49,190 INFO creating build/lib/pyboolnet/repository/calzone_cellfate 2026-03-04T19:42:49,191 INFO copying pyboolnet/repository/calzone_cellfate/calzone_cellfate.bnet -> build/lib/pyboolnet/repository/calzone_cellfate 2026-03-04T19:42:49,193 INFO creating build/lib/pyboolnet/repository/dahlhaus_neuroplastoma 2026-03-04T19:42:49,195 INFO copying pyboolnet/repository/dahlhaus_neuroplastoma/dahlhaus_neuroplastoma_igraph.pdf -> build/lib/pyboolnet/repository/dahlhaus_neuroplastoma 2026-03-04T19:42:49,198 INFO copying pyboolnet/repository/dahlhaus_neuroplastoma/dahlhaus_neuroplastoma.bnet -> build/lib/pyboolnet/repository/dahlhaus_neuroplastoma 2026-03-04T19:42:49,201 INFO copying pyboolnet/repository/dahlhaus_neuroplastoma/dahlhaus_neuroplastoma_strong_basins.pdf -> build/lib/pyboolnet/repository/dahlhaus_neuroplastoma 2026-03-04T19:42:49,204 INFO copying pyboolnet/repository/dahlhaus_neuroplastoma/dahlhaus_neuroplastoma_attrs_async.json -> build/lib/pyboolnet/repository/dahlhaus_neuroplastoma 2026-03-04T19:42:49,209 INFO copying pyboolnet/repository/dahlhaus_neuroplastoma/dahlhaus_neuroplastoma_all_basins.pdf -> build/lib/pyboolnet/repository/dahlhaus_neuroplastoma 2026-03-04T19:42:49,211 INFO copying pyboolnet/repository/dahlhaus_neuroplastoma/dahlhaus_neuroplastoma_commitment_diagram.pdf -> build/lib/pyboolnet/repository/dahlhaus_neuroplastoma 2026-03-04T19:42:49,215 INFO copying pyboolnet/repository/dahlhaus_neuroplastoma/dahlhaus_neuroplastoma_attractors.md -> build/lib/pyboolnet/repository/dahlhaus_neuroplastoma 2026-03-04T19:42:49,217 INFO copying pyboolnet/repository/dahlhaus_neuroplastoma/dahlhaus_neuroplastoma_commitment_pie.pdf -> build/lib/pyboolnet/repository/dahlhaus_neuroplastoma 2026-03-04T19:42:49,221 INFO creating build/lib/pyboolnet/repository/__pycache__ 2026-03-04T19:42:49,222 INFO copying pyboolnet/repository/__pycache__/__init__.cpython-312.pyc -> build/lib/pyboolnet/repository/__pycache__ 2026-03-04T19:42:49,225 INFO creating build/lib/pyboolnet/repository/saadatpour_guardcell 2026-03-04T19:42:49,226 INFO copying pyboolnet/repository/saadatpour_guardcell/saadatpour_guardcell.bnet -> build/lib/pyboolnet/repository/saadatpour_guardcell 2026-03-04T19:42:49,229 INFO copying pyboolnet/repository/saadatpour_guardcell/saadatpour_guardcell_all_basins.pdf -> build/lib/pyboolnet/repository/saadatpour_guardcell 2026-03-04T19:42:49,232 INFO copying pyboolnet/repository/saadatpour_guardcell/saadatpour_guardcell_attractors.md -> build/lib/pyboolnet/repository/saadatpour_guardcell 2026-03-04T19:42:49,234 INFO copying pyboolnet/repository/saadatpour_guardcell/saadatpour_guardcell_commitment_diagram.pdf -> build/lib/pyboolnet/repository/saadatpour_guardcell 2026-03-04T19:42:49,238 INFO copying pyboolnet/repository/saadatpour_guardcell/saadatpour_guardcell_strong_basins.pdf -> build/lib/pyboolnet/repository/saadatpour_guardcell 2026-03-04T19:42:49,240 INFO copying pyboolnet/repository/saadatpour_guardcell/saadatpour_guardcell_commitment_pie.pdf -> build/lib/pyboolnet/repository/saadatpour_guardcell 2026-03-04T19:42:49,244 INFO copying pyboolnet/repository/saadatpour_guardcell/saadatpour_guardcell_igraph.pdf -> build/lib/pyboolnet/repository/saadatpour_guardcell 2026-03-04T19:42:49,247 INFO creating build/lib/pyboolnet/repository/n12c5 2026-03-04T19:42:49,248 INFO copying pyboolnet/repository/n12c5/n12c5_attractors.md -> build/lib/pyboolnet/repository/n12c5 2026-03-04T19:42:49,250 INFO copying pyboolnet/repository/n12c5/n12c5_igraph.pdf -> build/lib/pyboolnet/repository/n12c5 2026-03-04T19:42:49,253 INFO copying pyboolnet/repository/n12c5/n12c5.bnet -> build/lib/pyboolnet/repository/n12c5 2026-03-04T19:42:49,255 INFO creating build/lib/pyboolnet/repository/zhang_tlgl_v2 2026-03-04T19:42:49,256 INFO copying pyboolnet/repository/zhang_tlgl_v2/zhang_tlgl_v2.bnet -> build/lib/pyboolnet/repository/zhang_tlgl_v2 2026-03-04T19:42:49,258 INFO creating build/lib/pyboolnet/repository/xiao_wnt5a 2026-03-04T19:42:49,260 INFO copying pyboolnet/repository/xiao_wnt5a/xiao_wnt5a_commitment_diagram.pdf -> build/lib/pyboolnet/repository/xiao_wnt5a 2026-03-04T19:42:49,263 INFO copying pyboolnet/repository/xiao_wnt5a/xiao_wnt5a_attractors.md -> build/lib/pyboolnet/repository/xiao_wnt5a 2026-03-04T19:42:49,266 INFO copying pyboolnet/repository/xiao_wnt5a/xiao_wnt5a_strong_basins.pdf -> build/lib/pyboolnet/repository/xiao_wnt5a 2026-03-04T19:42:49,269 INFO copying pyboolnet/repository/xiao_wnt5a/xiao_wnt5a_all_basins.pdf -> build/lib/pyboolnet/repository/xiao_wnt5a 2026-03-04T19:42:49,272 INFO copying pyboolnet/repository/xiao_wnt5a/xiao_wnt5a.bnet -> build/lib/pyboolnet/repository/xiao_wnt5a 2026-03-04T19:42:49,274 INFO copying pyboolnet/repository/xiao_wnt5a/xiao_wnt5a_igraph.pdf -> build/lib/pyboolnet/repository/xiao_wnt5a 2026-03-04T19:42:49,277 INFO copying pyboolnet/repository/xiao_wnt5a/xiao_wnt5a_commitment_pie.pdf -> build/lib/pyboolnet/repository/xiao_wnt5a 2026-03-04T19:42:49,280 INFO creating build/lib/pyboolnet/repository/zhang_tlgl 2026-03-04T19:42:49,280 INFO copying pyboolnet/repository/zhang_tlgl/zhang_tlgl.bnet -> build/lib/pyboolnet/repository/zhang_tlgl 2026-03-04T19:42:49,283 INFO creating build/lib/pyboolnet/repository/dinwoodie_stomatal 2026-03-04T19:42:49,284 INFO copying pyboolnet/repository/dinwoodie_stomatal/dinwoodie_stomatal.bnet -> build/lib/pyboolnet/repository/dinwoodie_stomatal 2026-03-04T19:42:49,286 INFO copying pyboolnet/repository/dinwoodie_stomatal/dinwoodie_stomatal_commitment_pie.pdf -> build/lib/pyboolnet/repository/dinwoodie_stomatal 2026-03-04T19:42:49,289 INFO copying pyboolnet/repository/dinwoodie_stomatal/dinwoodie_stomatal_all_basins.pdf -> build/lib/pyboolnet/repository/dinwoodie_stomatal 2026-03-04T19:42:49,292 INFO copying pyboolnet/repository/dinwoodie_stomatal/dinwoodie_stomatal_igraph.pdf -> build/lib/pyboolnet/repository/dinwoodie_stomatal 2026-03-04T19:42:49,296 INFO copying pyboolnet/repository/dinwoodie_stomatal/dinwoodie_stomatal_strong_basins.pdf -> build/lib/pyboolnet/repository/dinwoodie_stomatal 2026-03-04T19:42:49,298 INFO copying pyboolnet/repository/dinwoodie_stomatal/dinwoodie_stomatal_commitment_diagram.pdf -> build/lib/pyboolnet/repository/dinwoodie_stomatal 2026-03-04T19:42:49,302 INFO copying pyboolnet/repository/dinwoodie_stomatal/dinwoodie_stomatal_attractors.md -> build/lib/pyboolnet/repository/dinwoodie_stomatal 2026-03-04T19:42:49,395 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2026-03-04T19:42:49,396 !! 2026-03-04T19:42:49,397 ******************************************************************************** 2026-03-04T19:42:49,397 Please avoid running ``setup.py`` directly. 2026-03-04T19:42:49,398 Instead, use pypa/build, pypa/installer or other 2026-03-04T19:42:49,399 standards-based tools. 2026-03-04T19:42:49,400 This deprecation is overdue, please update your project and remove deprecated 2026-03-04T19:42:49,400 calls to avoid build errors in the future. 2026-03-04T19:42:49,402 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2026-03-04T19:42:49,402 ******************************************************************************** 2026-03-04T19:42:49,403 !! 2026-03-04T19:42:49,404 self.initialize_options() 2026-03-04T19:42:49,423 INFO installing to build/bdist.linux-armv7l/wheel 2026-03-04T19:42:49,424 INFO running install 2026-03-04T19:42:49,447 INFO running install_lib 2026-03-04T19:42:49,474 INFO creating build/bdist.linux-armv7l/wheel 2026-03-04T19:42:49,477 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet 2026-03-04T19:42:49,478 INFO copying build/lib/pyboolnet/version.py -> build/bdist.linux-armv7l/wheel/./pyboolnet 2026-03-04T19:42:49,480 INFO copying build/lib/pyboolnet/version.txt -> build/bdist.linux-armv7l/wheel/./pyboolnet 2026-03-04T19:42:49,482 INFO copying build/lib/pyboolnet/trap_spaces.py -> build/bdist.linux-armv7l/wheel/./pyboolnet 2026-03-04T19:42:49,485 INFO copying build/lib/pyboolnet/state_space.py -> build/bdist.linux-armv7l/wheel/./pyboolnet 2026-03-04T19:42:49,488 INFO copying build/lib/pyboolnet/helpers.py -> build/bdist.linux-armv7l/wheel/./pyboolnet 2026-03-04T19:42:49,491 INFO copying build/lib/pyboolnet/interaction_graphs.py -> build/bdist.linux-armv7l/wheel/./pyboolnet 2026-03-04T19:42:49,493 INFO copying build/lib/pyboolnet/phenotypes.py -> build/bdist.linux-armv7l/wheel/./pyboolnet 2026-03-04T19:42:49,497 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/repository 2026-03-04T19:42:49,498 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/repository/davidich_yeast 2026-03-04T19:42:49,500 INFO copying build/lib/pyboolnet/repository/davidich_yeast/davidich_yeast_commitment_pie.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/davidich_yeast 2026-03-04T19:42:49,502 INFO copying build/lib/pyboolnet/repository/davidich_yeast/davidich_yeast.bnet -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/davidich_yeast 2026-03-04T19:42:49,504 INFO copying build/lib/pyboolnet/repository/davidich_yeast/davidich_yeast_attractors.md -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/davidich_yeast 2026-03-04T19:42:49,506 INFO copying build/lib/pyboolnet/repository/davidich_yeast/davidich_yeast_all_basins.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/davidich_yeast 2026-03-04T19:42:49,509 INFO copying build/lib/pyboolnet/repository/davidich_yeast/davidich_yeast_strong_basins.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/davidich_yeast 2026-03-04T19:42:49,511 INFO copying build/lib/pyboolnet/repository/davidich_yeast/davidich_yeast_igraph.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/davidich_yeast 2026-03-04T19:42:49,514 INFO copying build/lib/pyboolnet/repository/davidich_yeast/davidich_yeast_commitment_diagram.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/davidich_yeast 2026-03-04T19:42:49,517 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/repository/arellano_rootstem 2026-03-04T19:42:49,519 INFO copying build/lib/pyboolnet/repository/arellano_rootstem/arellano_rootstem_attractors.md -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/arellano_rootstem 2026-03-04T19:42:49,521 INFO copying build/lib/pyboolnet/repository/arellano_rootstem/arellano_rootstem_strong_basins.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/arellano_rootstem 2026-03-04T19:42:49,524 INFO copying build/lib/pyboolnet/repository/arellano_rootstem/arellano_rootstem.bnet -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/arellano_rootstem 2026-03-04T19:42:49,526 INFO copying build/lib/pyboolnet/repository/arellano_rootstem/arellano_rootstem_all_basins.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/arellano_rootstem 2026-03-04T19:42:49,529 INFO copying build/lib/pyboolnet/repository/arellano_rootstem/arellano_rootstem_commitment_diagram.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/arellano_rootstem 2026-03-04T19:42:49,532 INFO copying build/lib/pyboolnet/repository/arellano_rootstem/arellano_rootstem_commitment_pie.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/arellano_rootstem 2026-03-04T19:42:49,534 INFO copying build/lib/pyboolnet/repository/arellano_rootstem/arellano_rootstem_igraph.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/arellano_rootstem 2026-03-04T19:42:49,537 INFO copying build/lib/pyboolnet/repository/README.md -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository 2026-03-04T19:42:49,539 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/repository/selvaggio_emt 2026-03-04T19:42:49,541 INFO copying build/lib/pyboolnet/repository/selvaggio_emt/selvaggio_emt.bnet -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/selvaggio_emt 2026-03-04T19:42:49,543 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/repository/remy_tumorigenesis 2026-03-04T19:42:49,544 INFO copying build/lib/pyboolnet/repository/remy_tumorigenesis/remy_tumorigenesis.bnet -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/remy_tumorigenesis 2026-03-04T19:42:49,547 INFO copying build/lib/pyboolnet/repository/remy_tumorigenesis/remy_tumorigenesis_myversion.bnet -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/remy_tumorigenesis 2026-03-04T19:42:49,550 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/repository/raf 2026-03-04T19:42:49,551 INFO copying build/lib/pyboolnet/repository/raf/raf_igraph.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/raf 2026-03-04T19:42:49,553 INFO copying build/lib/pyboolnet/repository/raf/raf_attractors.md -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/raf 2026-03-04T19:42:49,555 INFO copying build/lib/pyboolnet/repository/raf/raf_commitment_diagram.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/raf 2026-03-04T19:42:49,558 INFO copying build/lib/pyboolnet/repository/raf/raf_all_basins.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/raf 2026-03-04T19:42:49,560 INFO copying build/lib/pyboolnet/repository/raf/raf.bnet -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/raf 2026-03-04T19:42:49,562 INFO copying build/lib/pyboolnet/repository/raf/raf_commitment_pie.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/raf 2026-03-04T19:42:49,565 INFO copying build/lib/pyboolnet/repository/raf/raf_strong_basins.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/raf 2026-03-04T19:42:49,569 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/repository/n6s1c2 2026-03-04T19:42:49,570 INFO copying build/lib/pyboolnet/repository/n6s1c2/n6s1c2_commitment_pie.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/n6s1c2 2026-03-04T19:42:49,572 INFO copying build/lib/pyboolnet/repository/n6s1c2/n6s1c2.bnet -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/n6s1c2 2026-03-04T19:42:49,574 INFO copying build/lib/pyboolnet/repository/n6s1c2/n6s1c2_commitment_diagram.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/n6s1c2 2026-03-04T19:42:49,577 INFO copying build/lib/pyboolnet/repository/n6s1c2/n6s1c2_strong_basins.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/n6s1c2 2026-03-04T19:42:49,580 INFO copying build/lib/pyboolnet/repository/n6s1c2/n6s1c2_all_basins.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/n6s1c2 2026-03-04T19:42:49,582 INFO copying build/lib/pyboolnet/repository/n6s1c2/n6s1c2_attractors.md -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/n6s1c2 2026-03-04T19:42:49,584 INFO copying build/lib/pyboolnet/repository/n6s1c2/n6s1c2_igraph.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/n6s1c2 2026-03-04T19:42:49,587 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/repository/n3s1c1a 2026-03-04T19:42:49,588 INFO copying build/lib/pyboolnet/repository/n3s1c1a/n3s1c1a_strong_basins.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/n3s1c1a 2026-03-04T19:42:49,591 INFO copying build/lib/pyboolnet/repository/n3s1c1a/n3s1c1a.bnet -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/n3s1c1a 2026-03-04T19:42:49,593 INFO copying build/lib/pyboolnet/repository/n3s1c1a/n3s1c1a_attractors.md -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/n3s1c1a 2026-03-04T19:42:49,595 INFO copying build/lib/pyboolnet/repository/n3s1c1a/n3s1c1a_igraph.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/n3s1c1a 2026-03-04T19:42:49,597 INFO copying build/lib/pyboolnet/repository/n3s1c1a/n3s1c1a_commitment_pie.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/n3s1c1a 2026-03-04T19:42:49,601 INFO copying build/lib/pyboolnet/repository/n3s1c1a/n3s1c1a_all_basins.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/n3s1c1a 2026-03-04T19:42:49,641 INFO copying build/lib/pyboolnet/repository/n3s1c1a/n3s1c1a_commitment_diagram.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/n3s1c1a 2026-03-04T19:42:49,647 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/repository/klamt_tcr 2026-03-04T19:42:49,649 INFO copying build/lib/pyboolnet/repository/klamt_tcr/klamt_tcr_attractors.md -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/klamt_tcr 2026-03-04T19:42:49,655 INFO copying build/lib/pyboolnet/repository/klamt_tcr/klamt_tcr.bnet -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/klamt_tcr 2026-03-04T19:42:49,659 INFO copying build/lib/pyboolnet/repository/klamt_tcr/klamt_tcr_igraph.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/klamt_tcr 2026-03-04T19:42:49,662 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/repository/n7s3 2026-03-04T19:42:49,663 INFO copying build/lib/pyboolnet/repository/n7s3/n7s3_strong_basins.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/n7s3 2026-03-04T19:42:49,665 INFO copying build/lib/pyboolnet/repository/n7s3/n7s3_attractors.md -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/n7s3 2026-03-04T19:42:49,667 INFO copying build/lib/pyboolnet/repository/n7s3/n7s3_commitment_pie.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/n7s3 2026-03-04T19:42:49,669 INFO copying build/lib/pyboolnet/repository/n7s3/n7s3.bnet -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/n7s3 2026-03-04T19:42:49,671 INFO copying build/lib/pyboolnet/repository/n7s3/n7s3_commitment_diagram.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/n7s3 2026-03-04T19:42:49,674 INFO copying build/lib/pyboolnet/repository/n7s3/n7s3_all_basins.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/n7s3 2026-03-04T19:42:49,677 INFO copying build/lib/pyboolnet/repository/n7s3/n7s3_igraph.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/n7s3 2026-03-04T19:42:49,680 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/repository/n3s1c1b 2026-03-04T19:42:49,681 INFO copying build/lib/pyboolnet/repository/n3s1c1b/n3s1c1b_igraph.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/n3s1c1b 2026-03-04T19:42:49,684 INFO copying build/lib/pyboolnet/repository/n3s1c1b/n3s1c1b_commitment_diagram.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/n3s1c1b 2026-03-04T19:42:49,687 INFO copying build/lib/pyboolnet/repository/n3s1c1b/n3s1c1b_commitment_pie.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/n3s1c1b 2026-03-04T19:42:49,689 INFO copying build/lib/pyboolnet/repository/n3s1c1b/n3s1c1b_all_basins.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/n3s1c1b 2026-03-04T19:42:49,692 INFO copying build/lib/pyboolnet/repository/n3s1c1b/n3s1c1b.bnet -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/n3s1c1b 2026-03-04T19:42:49,694 INFO copying build/lib/pyboolnet/repository/n3s1c1b/n3s1c1b_strong_basins.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/n3s1c1b 2026-03-04T19:42:49,696 INFO copying build/lib/pyboolnet/repository/n3s1c1b/n3s1c1b_attractors.md -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/n3s1c1b 2026-03-04T19:42:49,699 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/repository/n5s3 2026-03-04T19:42:49,700 INFO copying build/lib/pyboolnet/repository/n5s3/n5s3_attractors.md -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/n5s3 2026-03-04T19:42:49,702 INFO copying build/lib/pyboolnet/repository/n5s3/n5s3_igraph.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/n5s3 2026-03-04T19:42:49,704 INFO copying build/lib/pyboolnet/repository/n5s3/n5s3_commitment_pie.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/n5s3 2026-03-04T19:42:49,707 INFO copying build/lib/pyboolnet/repository/n5s3/n5s3.bnet -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/n5s3 2026-03-04T19:42:49,709 INFO copying build/lib/pyboolnet/repository/n5s3/n5s3_strong_basins.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/n5s3 2026-03-04T19:42:49,711 INFO copying build/lib/pyboolnet/repository/n5s3/n5s3_commitment_diagram.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/n5s3 2026-03-04T19:42:49,714 INFO copying build/lib/pyboolnet/repository/n5s3/n5s3_all_basins.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/n5s3 2026-03-04T19:42:49,717 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/repository/jaoude_thdiff 2026-03-04T19:42:49,718 INFO copying build/lib/pyboolnet/repository/jaoude_thdiff/jaoude_thdiff_igraph.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/jaoude_thdiff 2026-03-04T19:42:49,721 INFO copying build/lib/pyboolnet/repository/jaoude_thdiff/jaoude_thdiff.bnet -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/jaoude_thdiff 2026-03-04T19:42:49,724 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/repository/dinwoodie_life 2026-03-04T19:42:49,725 INFO copying build/lib/pyboolnet/repository/dinwoodie_life/dinwoodie_life_igraph.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/dinwoodie_life 2026-03-04T19:42:49,728 INFO copying build/lib/pyboolnet/repository/dinwoodie_life/dinwoodie_life_commitment_diagram.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/dinwoodie_life 2026-03-04T19:42:49,731 INFO copying build/lib/pyboolnet/repository/dinwoodie_life/dinwoodie_life_strong_basins.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/dinwoodie_life 2026-03-04T19:42:49,733 INFO copying build/lib/pyboolnet/repository/dinwoodie_life/dinwoodie_life.bnet -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/dinwoodie_life 2026-03-04T19:42:49,735 INFO copying build/lib/pyboolnet/repository/dinwoodie_life/dinwoodie_life_all_basins.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/dinwoodie_life 2026-03-04T19:42:49,738 INFO copying build/lib/pyboolnet/repository/dinwoodie_life/dinwoodie_life_attractors.md -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/dinwoodie_life 2026-03-04T19:42:49,740 INFO copying build/lib/pyboolnet/repository/dinwoodie_life/dinwoodie_life_commitment_pie.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/dinwoodie_life 2026-03-04T19:42:49,745 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/repository/irons_yeast 2026-03-04T19:42:49,746 INFO copying build/lib/pyboolnet/repository/irons_yeast/irons_yeast_all_basins.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/irons_yeast 2026-03-04T19:42:49,749 INFO copying build/lib/pyboolnet/repository/irons_yeast/irons_yeast_attractors.md -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/irons_yeast 2026-03-04T19:42:49,753 INFO copying build/lib/pyboolnet/repository/irons_yeast/irons_yeast_strong_basins.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/irons_yeast 2026-03-04T19:42:49,757 INFO copying build/lib/pyboolnet/repository/irons_yeast/irons_yeast_commitment_diagram.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/irons_yeast 2026-03-04T19:42:49,759 INFO copying build/lib/pyboolnet/repository/irons_yeast/irons_yeast.bnet -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/irons_yeast 2026-03-04T19:42:49,761 INFO copying build/lib/pyboolnet/repository/irons_yeast/irons_yeast_commitment_pie.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/irons_yeast 2026-03-04T19:42:49,764 INFO copying build/lib/pyboolnet/repository/irons_yeast/irons_yeast_igraph.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/irons_yeast 2026-03-04T19:42:49,767 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/repository/multivalued 2026-03-04T19:42:49,768 INFO copying build/lib/pyboolnet/repository/multivalued/multivalued.bnet -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/multivalued 2026-03-04T19:42:49,770 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/repository/faure_cellcycle 2026-03-04T19:42:49,772 INFO copying build/lib/pyboolnet/repository/faure_cellcycle/faure_cellcycle_strong_basins.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/faure_cellcycle 2026-03-04T19:42:49,774 INFO copying build/lib/pyboolnet/repository/faure_cellcycle/faure_cellcycle_attractors.md -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/faure_cellcycle 2026-03-04T19:42:49,776 INFO copying build/lib/pyboolnet/repository/faure_cellcycle/faure_cellcycle_all_basins.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/faure_cellcycle 2026-03-04T19:42:49,779 INFO copying build/lib/pyboolnet/repository/faure_cellcycle/faure_cellcycle_igraph.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/faure_cellcycle 2026-03-04T19:42:49,781 INFO copying build/lib/pyboolnet/repository/faure_cellcycle/faure_cellcycle_commitment_pie.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/faure_cellcycle 2026-03-04T19:42:49,784 INFO copying build/lib/pyboolnet/repository/faure_cellcycle/faure_cellcycle.bnet -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/faure_cellcycle 2026-03-04T19:42:49,786 INFO copying build/lib/pyboolnet/repository/faure_cellcycle/faure_cellcycle_commitment_diagram.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/faure_cellcycle 2026-03-04T19:42:49,788 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/repository/tournier_apoptosis 2026-03-04T19:42:49,789 INFO copying build/lib/pyboolnet/repository/tournier_apoptosis/tournier_apoptosis_attrs_mixed.json -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/tournier_apoptosis 2026-03-04T19:42:49,792 INFO copying build/lib/pyboolnet/repository/tournier_apoptosis/tournier_apoptosis_all_basins.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/tournier_apoptosis 2026-03-04T19:42:49,794 INFO copying build/lib/pyboolnet/repository/tournier_apoptosis/tournier_apoptosis_attrs_async.json -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/tournier_apoptosis 2026-03-04T19:42:49,796 INFO copying build/lib/pyboolnet/repository/tournier_apoptosis/tournier_apoptosis_igraph.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/tournier_apoptosis 2026-03-04T19:42:49,798 INFO copying build/lib/pyboolnet/repository/tournier_apoptosis/tournier_apoptosis_commitment_pie.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/tournier_apoptosis 2026-03-04T19:42:49,801 INFO copying build/lib/pyboolnet/repository/tournier_apoptosis/tournier_apoptosis_attractors.md -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/tournier_apoptosis 2026-03-04T19:42:49,803 INFO copying build/lib/pyboolnet/repository/tournier_apoptosis/tournier_apoptosis_strong_basins.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/tournier_apoptosis 2026-03-04T19:42:49,805 INFO copying build/lib/pyboolnet/repository/tournier_apoptosis/tournier_apoptosis_attrs_sync.json -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/tournier_apoptosis 2026-03-04T19:42:49,807 INFO copying build/lib/pyboolnet/repository/tournier_apoptosis/tournier_apoptosis.bnet -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/tournier_apoptosis 2026-03-04T19:42:49,809 INFO copying build/lib/pyboolnet/repository/tournier_apoptosis/tournier_apoptosis_commitment_diagram.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/tournier_apoptosis 2026-03-04T19:42:49,812 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/repository/randomnet_n15k3 2026-03-04T19:42:49,813 INFO copying build/lib/pyboolnet/repository/randomnet_n15k3/randomnet_n15k3_commitment_diagram.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/randomnet_n15k3 2026-03-04T19:42:49,816 INFO copying build/lib/pyboolnet/repository/randomnet_n15k3/randomnet_n15k3_attractors.md -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/randomnet_n15k3 2026-03-04T19:42:49,817 INFO copying build/lib/pyboolnet/repository/randomnet_n15k3/randomnet_n15k3_strong_basins.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/randomnet_n15k3 2026-03-04T19:42:49,820 INFO copying build/lib/pyboolnet/repository/randomnet_n15k3/randomnet_n15k3_commitment_pie.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/randomnet_n15k3 2026-03-04T19:42:49,822 INFO copying build/lib/pyboolnet/repository/randomnet_n15k3/randomnet_n15k3.bnet -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/randomnet_n15k3 2026-03-04T19:42:49,824 INFO copying build/lib/pyboolnet/repository/randomnet_n15k3/randomnet_n15k3_igraph.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/randomnet_n15k3 2026-03-04T19:42:49,827 INFO copying build/lib/pyboolnet/repository/randomnet_n15k3/randomnet_n15k3_all_basins.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/randomnet_n15k3 2026-03-04T19:42:49,829 INFO copying build/lib/pyboolnet/repository/jobs.py -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository 2026-03-04T19:42:49,831 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/repository/grieco_mapk 2026-03-04T19:42:49,832 INFO copying build/lib/pyboolnet/repository/grieco_mapk/grieco_mapk_igraph.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/grieco_mapk 2026-03-04T19:42:49,835 INFO copying build/lib/pyboolnet/repository/grieco_mapk/grieco_mapk.bnet -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/grieco_mapk 2026-03-04T19:42:49,837 INFO copying build/lib/pyboolnet/repository/grieco_mapk/grieco_mapk_attrs_sync.json -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/grieco_mapk 2026-03-04T19:42:49,841 INFO copying build/lib/pyboolnet/repository/grieco_mapk/grieco_mapk_attrs_async.json -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/grieco_mapk 2026-03-04T19:42:49,845 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/repository/krumsiek_myeloid 2026-03-04T19:42:49,846 INFO copying build/lib/pyboolnet/repository/krumsiek_myeloid/krumsiek_myeloid.bnet -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/krumsiek_myeloid 2026-03-04T19:42:49,848 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/repository/randomnet_n7k3 2026-03-04T19:42:49,849 INFO copying build/lib/pyboolnet/repository/randomnet_n7k3/randomnet_n7k3_igraph.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/randomnet_n7k3 2026-03-04T19:42:49,852 INFO copying build/lib/pyboolnet/repository/randomnet_n7k3/randomnet_n7k3_commitment_pie.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/randomnet_n7k3 2026-03-04T19:42:49,854 INFO copying build/lib/pyboolnet/repository/randomnet_n7k3/randomnet_n7k3_strong_basins.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/randomnet_n7k3 2026-03-04T19:42:49,857 INFO copying build/lib/pyboolnet/repository/randomnet_n7k3/randomnet_n7k3_attractors.md -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/randomnet_n7k3 2026-03-04T19:42:49,859 INFO copying build/lib/pyboolnet/repository/randomnet_n7k3/randomnet_n7k3_commitment_diagram.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/randomnet_n7k3 2026-03-04T19:42:49,861 INFO copying build/lib/pyboolnet/repository/randomnet_n7k3/randomnet_n7k3_all_basins.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/randomnet_n7k3 2026-03-04T19:42:49,863 INFO copying build/lib/pyboolnet/repository/randomnet_n7k3/randomnet_n7k3.bnet -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/randomnet_n7k3 2026-03-04T19:42:49,866 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/repository/calzone_cellfate 2026-03-04T19:42:49,867 INFO copying build/lib/pyboolnet/repository/calzone_cellfate/calzone_cellfate.bnet -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/calzone_cellfate 2026-03-04T19:42:49,870 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/repository/dahlhaus_neuroplastoma 2026-03-04T19:42:49,871 INFO copying build/lib/pyboolnet/repository/dahlhaus_neuroplastoma/dahlhaus_neuroplastoma_igraph.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/dahlhaus_neuroplastoma 2026-03-04T19:42:49,873 INFO copying build/lib/pyboolnet/repository/dahlhaus_neuroplastoma/dahlhaus_neuroplastoma.bnet -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/dahlhaus_neuroplastoma 2026-03-04T19:42:49,876 INFO copying build/lib/pyboolnet/repository/dahlhaus_neuroplastoma/dahlhaus_neuroplastoma_strong_basins.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/dahlhaus_neuroplastoma 2026-03-04T19:42:49,878 INFO copying build/lib/pyboolnet/repository/dahlhaus_neuroplastoma/dahlhaus_neuroplastoma_attrs_async.json -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/dahlhaus_neuroplastoma 2026-03-04T19:42:49,882 INFO copying build/lib/pyboolnet/repository/dahlhaus_neuroplastoma/dahlhaus_neuroplastoma_all_basins.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/dahlhaus_neuroplastoma 2026-03-04T19:42:49,885 INFO copying build/lib/pyboolnet/repository/dahlhaus_neuroplastoma/dahlhaus_neuroplastoma_commitment_diagram.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/dahlhaus_neuroplastoma 2026-03-04T19:42:49,887 INFO copying build/lib/pyboolnet/repository/dahlhaus_neuroplastoma/dahlhaus_neuroplastoma_attractors.md -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/dahlhaus_neuroplastoma 2026-03-04T19:42:49,890 INFO copying build/lib/pyboolnet/repository/dahlhaus_neuroplastoma/dahlhaus_neuroplastoma_commitment_pie.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/dahlhaus_neuroplastoma 2026-03-04T19:42:49,893 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/repository/__pycache__ 2026-03-04T19:42:49,894 INFO copying build/lib/pyboolnet/repository/__pycache__/__init__.cpython-312.pyc -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/__pycache__ 2026-03-04T19:42:49,897 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/repository/saadatpour_guardcell 2026-03-04T19:42:49,898 INFO copying build/lib/pyboolnet/repository/saadatpour_guardcell/saadatpour_guardcell.bnet -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/saadatpour_guardcell 2026-03-04T19:42:49,900 INFO copying build/lib/pyboolnet/repository/saadatpour_guardcell/saadatpour_guardcell_all_basins.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/saadatpour_guardcell 2026-03-04T19:42:49,902 INFO copying build/lib/pyboolnet/repository/saadatpour_guardcell/saadatpour_guardcell_attractors.md -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/saadatpour_guardcell 2026-03-04T19:42:49,904 INFO copying build/lib/pyboolnet/repository/saadatpour_guardcell/saadatpour_guardcell_commitment_diagram.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/saadatpour_guardcell 2026-03-04T19:42:49,906 INFO copying build/lib/pyboolnet/repository/saadatpour_guardcell/saadatpour_guardcell_strong_basins.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/saadatpour_guardcell 2026-03-04T19:42:49,909 INFO copying build/lib/pyboolnet/repository/saadatpour_guardcell/saadatpour_guardcell_commitment_pie.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/saadatpour_guardcell 2026-03-04T19:42:49,911 INFO copying build/lib/pyboolnet/repository/saadatpour_guardcell/saadatpour_guardcell_igraph.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/saadatpour_guardcell 2026-03-04T19:42:49,914 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/repository/n12c5 2026-03-04T19:42:49,915 INFO copying build/lib/pyboolnet/repository/n12c5/n12c5_attractors.md -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/n12c5 2026-03-04T19:42:49,917 INFO copying build/lib/pyboolnet/repository/n12c5/n12c5_igraph.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/n12c5 2026-03-04T19:42:49,920 INFO copying build/lib/pyboolnet/repository/n12c5/n12c5.bnet -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/n12c5 2026-03-04T19:42:49,923 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/repository/zhang_tlgl_v2 2026-03-04T19:42:49,924 INFO copying build/lib/pyboolnet/repository/zhang_tlgl_v2/zhang_tlgl_v2.bnet -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/zhang_tlgl_v2 2026-03-04T19:42:49,927 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/repository/xiao_wnt5a 2026-03-04T19:42:49,928 INFO copying build/lib/pyboolnet/repository/xiao_wnt5a/xiao_wnt5a_commitment_diagram.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/xiao_wnt5a 2026-03-04T19:42:49,933 INFO copying build/lib/pyboolnet/repository/xiao_wnt5a/xiao_wnt5a_attractors.md -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/xiao_wnt5a 2026-03-04T19:42:49,938 INFO copying build/lib/pyboolnet/repository/xiao_wnt5a/xiao_wnt5a_strong_basins.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/xiao_wnt5a 2026-03-04T19:42:49,941 INFO copying build/lib/pyboolnet/repository/xiao_wnt5a/xiao_wnt5a_all_basins.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/xiao_wnt5a 2026-03-04T19:42:49,944 INFO copying build/lib/pyboolnet/repository/xiao_wnt5a/xiao_wnt5a.bnet -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/xiao_wnt5a 2026-03-04T19:42:49,945 INFO copying build/lib/pyboolnet/repository/xiao_wnt5a/xiao_wnt5a_igraph.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/xiao_wnt5a 2026-03-04T19:42:49,947 INFO copying build/lib/pyboolnet/repository/xiao_wnt5a/xiao_wnt5a_commitment_pie.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/xiao_wnt5a 2026-03-04T19:42:49,950 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/repository/zhang_tlgl 2026-03-04T19:42:49,951 INFO copying build/lib/pyboolnet/repository/zhang_tlgl/zhang_tlgl.bnet -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/zhang_tlgl 2026-03-04T19:42:49,954 INFO copying build/lib/pyboolnet/repository/__init__.py -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository 2026-03-04T19:42:49,956 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/repository/dinwoodie_stomatal 2026-03-04T19:42:49,957 INFO copying build/lib/pyboolnet/repository/dinwoodie_stomatal/dinwoodie_stomatal.bnet -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/dinwoodie_stomatal 2026-03-04T19:42:49,960 INFO copying build/lib/pyboolnet/repository/dinwoodie_stomatal/dinwoodie_stomatal_commitment_pie.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/dinwoodie_stomatal 2026-03-04T19:42:49,962 INFO copying build/lib/pyboolnet/repository/dinwoodie_stomatal/dinwoodie_stomatal_all_basins.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/dinwoodie_stomatal 2026-03-04T19:42:49,964 INFO copying build/lib/pyboolnet/repository/dinwoodie_stomatal/dinwoodie_stomatal_igraph.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/dinwoodie_stomatal 2026-03-04T19:42:49,967 INFO copying build/lib/pyboolnet/repository/dinwoodie_stomatal/dinwoodie_stomatal_strong_basins.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/dinwoodie_stomatal 2026-03-04T19:42:49,969 INFO copying build/lib/pyboolnet/repository/dinwoodie_stomatal/dinwoodie_stomatal_commitment_diagram.pdf -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/dinwoodie_stomatal 2026-03-04T19:42:49,971 INFO copying build/lib/pyboolnet/repository/dinwoodie_stomatal/dinwoodie_stomatal_attractors.md -> build/bdist.linux-armv7l/wheel/./pyboolnet/repository/dinwoodie_stomatal 2026-03-04T19:42:49,973 INFO copying build/lib/pyboolnet/file_exchange.py -> build/bdist.linux-armv7l/wheel/./pyboolnet 2026-03-04T19:42:49,976 INFO copying build/lib/pyboolnet/temporal_logic.py -> build/bdist.linux-armv7l/wheel/./pyboolnet 2026-03-04T19:42:49,978 INFO copying build/lib/pyboolnet/model_checking.py -> build/bdist.linux-armv7l/wheel/./pyboolnet 2026-03-04T19:42:49,980 INFO copying build/lib/pyboolnet/boolean_normal_forms.py -> build/bdist.linux-armv7l/wheel/./pyboolnet 2026-03-04T19:42:49,983 INFO copying build/lib/pyboolnet/commitment_diagrams.py -> build/bdist.linux-armv7l/wheel/./pyboolnet 2026-03-04T19:42:49,985 INFO copying build/lib/pyboolnet/network_generators.py -> build/bdist.linux-armv7l/wheel/./pyboolnet 2026-03-04T19:42:49,987 INFO copying build/lib/pyboolnet/state_transition_graphs.py -> build/bdist.linux-armv7l/wheel/./pyboolnet 2026-03-04T19:42:49,990 INFO copying build/lib/pyboolnet/basins_of_attraction.py -> build/bdist.linux-armv7l/wheel/./pyboolnet 2026-03-04T19:42:49,992 INFO copying build/lib/pyboolnet/digraphs.py -> build/bdist.linux-armv7l/wheel/./pyboolnet 2026-03-04T19:42:49,996 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/external 2026-03-04T19:42:49,996 INFO copying build/lib/pyboolnet/external/potassco.py -> build/bdist.linux-armv7l/wheel/./pyboolnet/external 2026-03-04T19:42:49,999 INFO copying build/lib/pyboolnet/external/bnet2primes.py -> build/bdist.linux-armv7l/wheel/./pyboolnet/external 2026-03-04T19:42:50,001 INFO copying build/lib/pyboolnet/external/__init__.py -> build/bdist.linux-armv7l/wheel/./pyboolnet/external 2026-03-04T19:42:50,003 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/cli 2026-03-04T19:42:50,004 INFO copying build/lib/pyboolnet/cli/helpers.py -> build/bdist.linux-armv7l/wheel/./pyboolnet/cli 2026-03-04T19:42:50,006 INFO copying build/lib/pyboolnet/cli/main.py -> build/bdist.linux-armv7l/wheel/./pyboolnet/cli 2026-03-04T19:42:50,007 INFO copying build/lib/pyboolnet/cli/check_dependencies.py -> build/bdist.linux-armv7l/wheel/./pyboolnet/cli 2026-03-04T19:42:50,010 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/cli/commands 2026-03-04T19:42:50,011 INFO copying build/lib/pyboolnet/cli/commands/trap_spaces.py -> build/bdist.linux-armv7l/wheel/./pyboolnet/cli/commands 2026-03-04T19:42:50,013 INFO copying build/lib/pyboolnet/cli/commands/check_dependencies.py -> build/bdist.linux-armv7l/wheel/./pyboolnet/cli/commands 2026-03-04T19:42:50,014 INFO copying build/lib/pyboolnet/cli/commands/__init__.py -> build/bdist.linux-armv7l/wheel/./pyboolnet/cli/commands 2026-03-04T19:42:50,016 INFO copying build/lib/pyboolnet/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./pyboolnet/cli 2026-03-04T19:42:50,017 INFO copying build/lib/pyboolnet/attractors.py -> build/bdist.linux-armv7l/wheel/./pyboolnet 2026-03-04T19:42:50,020 INFO copying build/lib/pyboolnet/__init__.py -> build/bdist.linux-armv7l/wheel/./pyboolnet 2026-03-04T19:42:50,023 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/binaries 2026-03-04T19:42:50,024 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/binaries/win64 2026-03-04T19:42:50,026 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/binaries/win64/BNetToPrime 2026-03-04T19:42:50,027 INFO copying build/lib/pyboolnet/binaries/win64/BNetToPrime/libgcc_s_dw2-1.dll -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/BNetToPrime 2026-03-04T19:42:50,050 INFO copying build/lib/pyboolnet/binaries/win64/BNetToPrime/libstdc++-6.dll -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/BNetToPrime 2026-03-04T19:42:50,082 INFO copying build/lib/pyboolnet/binaries/win64/BNetToPrime/BNetToPrime_win64.exe -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/BNetToPrime 2026-03-04T19:42:50,094 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/binaries/win64/espresso 2026-03-04T19:42:50,094 INFO copying build/lib/pyboolnet/binaries/win64/espresso/espresso_win64.exe -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/espresso 2026-03-04T19:42:50,111 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/binaries/win64/eqntott 2026-03-04T19:42:50,112 INFO copying build/lib/pyboolnet/binaries/win64/eqntott/eqntott_win64.exe -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/eqntott 2026-03-04T19:42:50,118 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:50,119 INFO copying build/lib/pyboolnet/binaries/win64/NuSMV-a/libmpc-3.dll -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:50,123 INFO copying build/lib/pyboolnet/binaries/win64/NuSMV-a/libmpfr-4.dll -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:50,138 INFO copying build/lib/pyboolnet/binaries/win64/NuSMV-a/libgettextlib-0-18-3.dll -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:50,161 INFO copying build/lib/pyboolnet/binaries/win64/NuSMV-a/libgcc_s_dw2-1.dll -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:50,169 INFO copying build/lib/pyboolnet/binaries/win64/NuSMV-a/libiconv-2.dll -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:50,191 INFO copying build/lib/pyboolnet/binaries/win64/NuSMV-a/libatomic-1.dll -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:50,194 INFO copying build/lib/pyboolnet/binaries/win64/NuSMV-a/libexpat-1.dll -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:50,202 INFO copying build/lib/pyboolnet/binaries/win64/NuSMV-a/libcharset-1.dll -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:50,208 INFO copying build/lib/pyboolnet/binaries/win64/NuSMV-a/libintl-8.dll -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:50,217 INFO copying build/lib/pyboolnet/binaries/win64/NuSMV-a/libssp-0.dll -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:50,220 INFO copying build/lib/pyboolnet/binaries/win64/NuSMV-a/libltdl-7.dll -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:50,222 INFO copying build/lib/pyboolnet/binaries/win64/NuSMV-a/libgettextsrc-0-18-3.dll -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:50,229 INFO copying build/lib/pyboolnet/binaries/win64/NuSMV-a/libgomp-1.dll -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:50,233 INFO copying build/lib/pyboolnet/binaries/win64/NuSMV-a/zlib1.dll -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:50,237 INFO copying build/lib/pyboolnet/binaries/win64/NuSMV-a/libgmpxx-4.dll -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:50,242 INFO copying build/lib/pyboolnet/binaries/win64/NuSMV-a/libgmp-10.dll -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:50,254 INFO copying build/lib/pyboolnet/binaries/win64/NuSMV-a/pthreadGC-3.dll -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:50,268 INFO copying build/lib/pyboolnet/binaries/win64/NuSMV-a/libstdc++-6.dll -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:50,291 INFO copying build/lib/pyboolnet/binaries/win64/NuSMV-a/libquadmath-0.dll -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:50,301 INFO copying build/lib/pyboolnet/binaries/win64/NuSMV-a/libgettextpo-0.dll -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:50,309 INFO copying build/lib/pyboolnet/binaries/win64/NuSMV-a/mingwm10.dll -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:50,352 INFO copying build/lib/pyboolnet/binaries/win64/NuSMV-a/NuSMVa_win32.exe -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/NuSMV-a 2026-03-04T19:42:50,405 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/binaries/win64/gringo-4.4.0 2026-03-04T19:42:50,407 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/binaries/win64/gringo-4.4.0/examples 2026-03-04T19:42:50,409 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/binaries/win64/gringo-4.4.0/examples/queens 2026-03-04T19:42:50,410 INFO copying build/lib/pyboolnet/binaries/win64/gringo-4.4.0/examples/queens/queens2.lp -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/gringo-4.4.0/examples/queens 2026-03-04T19:42:50,412 INFO copying build/lib/pyboolnet/binaries/win64/gringo-4.4.0/examples/queens/README -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/gringo-4.4.0/examples/queens 2026-03-04T19:42:50,413 INFO copying build/lib/pyboolnet/binaries/win64/gringo-4.4.0/examples/queens/queens1.lp -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/gringo-4.4.0/examples/queens 2026-03-04T19:42:50,416 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/binaries/win64/gringo-4.4.0/examples/rec-cond 2026-03-04T19:42:50,417 INFO copying build/lib/pyboolnet/binaries/win64/gringo-4.4.0/examples/rec-cond/instance.lp -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/gringo-4.4.0/examples/rec-cond 2026-03-04T19:42:50,419 INFO copying build/lib/pyboolnet/binaries/win64/gringo-4.4.0/examples/rec-cond/encoding.lp -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/gringo-4.4.0/examples/rec-cond 2026-03-04T19:42:50,421 INFO copying build/lib/pyboolnet/binaries/win64/gringo-4.4.0/examples/rec-cond/README -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/gringo-4.4.0/examples/rec-cond 2026-03-04T19:42:50,423 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie 2026-03-04T19:42:50,424 INFO copying build/lib/pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie/README -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie 2026-03-04T19:42:50,426 INFO copying build/lib/pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie/gbie1.lp -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie 2026-03-04T19:42:50,428 INFO copying build/lib/pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie/gbie2.lp -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie 2026-03-04T19:42:50,430 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie/instances 2026-03-04T19:42:50,431 INFO copying build/lib/pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie/instances/sat_02.lp -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie/instances 2026-03-04T19:42:50,454 INFO copying build/lib/pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie/instances/sat_01.lp -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie/instances 2026-03-04T19:42:50,455 INFO copying build/lib/pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie/instances/unsat_02.lp -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie/instances 2026-03-04T19:42:50,482 INFO copying build/lib/pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie/instances/sat_03.lp -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie/instances 2026-03-04T19:42:50,502 INFO copying build/lib/pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie/instances/unsat_01.lp -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie/instances 2026-03-04T19:42:50,504 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/binaries/win64/gringo-4.4.0/examples/toh 2026-03-04T19:42:50,505 INFO copying build/lib/pyboolnet/binaries/win64/gringo-4.4.0/examples/toh/tohE.lp -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/gringo-4.4.0/examples/toh 2026-03-04T19:42:50,507 INFO copying build/lib/pyboolnet/binaries/win64/gringo-4.4.0/examples/toh/README -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/gringo-4.4.0/examples/toh 2026-03-04T19:42:50,509 INFO copying build/lib/pyboolnet/binaries/win64/gringo-4.4.0/examples/toh/tohI.lp -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/gringo-4.4.0/examples/toh 2026-03-04T19:42:50,510 INFO copying build/lib/pyboolnet/binaries/win64/gringo-4.4.0/INSTALL -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/gringo-4.4.0 2026-03-04T19:42:50,513 INFO copying build/lib/pyboolnet/binaries/win64/gringo-4.4.0/README -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/gringo-4.4.0 2026-03-04T19:42:50,514 INFO copying build/lib/pyboolnet/binaries/win64/gringo-4.4.0/COPYING -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/gringo-4.4.0 2026-03-04T19:42:50,517 INFO copying build/lib/pyboolnet/binaries/win64/gringo-4.4.0/gringo_win64.exe -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/gringo-4.4.0 2026-03-04T19:42:50,554 INFO copying build/lib/pyboolnet/binaries/win64/gringo-4.4.0/NOTES -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/gringo-4.4.0 2026-03-04T19:42:50,556 INFO copying build/lib/pyboolnet/binaries/win64/gringo-4.4.0/CHANGES -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/gringo-4.4.0 2026-03-04T19:42:50,558 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/binaries/win64/clasp-3.1.1 2026-03-04T19:42:50,559 INFO copying build/lib/pyboolnet/binaries/win64/clasp-3.1.1/README -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/clasp-3.1.1 2026-03-04T19:42:50,562 INFO copying build/lib/pyboolnet/binaries/win64/clasp-3.1.1/COPYING -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/clasp-3.1.1 2026-03-04T19:42:50,571 INFO copying build/lib/pyboolnet/binaries/win64/clasp-3.1.1/clasp-3.1.1_win64.exe -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/clasp-3.1.1 2026-03-04T19:42:50,591 INFO copying build/lib/pyboolnet/binaries/win64/clasp-3.1.1/CHANGES -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64/clasp-3.1.1 2026-03-04T19:42:50,594 INFO copying build/lib/pyboolnet/binaries/win64/settings.cfg -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/win64 2026-03-04T19:42:50,597 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/binaries/conda 2026-03-04T19:42:50,598 INFO copying build/lib/pyboolnet/binaries/conda/settings.cfg -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/conda 2026-03-04T19:42:50,601 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/binaries/linux64 2026-03-04T19:42:50,603 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/binaries/linux64/BNetToPrime 2026-03-04T19:42:50,604 INFO copying build/lib/pyboolnet/binaries/linux64/BNetToPrime/README.md -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/linux64/BNetToPrime 2026-03-04T19:42:50,607 INFO copying build/lib/pyboolnet/binaries/linux64/BNetToPrime/CMakeLists.txt -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/linux64/BNetToPrime 2026-03-04T19:42:50,609 INFO copying build/lib/pyboolnet/binaries/linux64/BNetToPrime/main.cpp -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/linux64/BNetToPrime 2026-03-04T19:42:50,611 INFO copying build/lib/pyboolnet/binaries/linux64/BNetToPrime/BNetToPrime_linux64 -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/linux64/BNetToPrime 2026-03-04T19:42:50,619 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/binaries/linux64/espresso 2026-03-04T19:42:50,620 INFO copying build/lib/pyboolnet/binaries/linux64/espresso/espresso_linux64 -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/linux64/espresso 2026-03-04T19:42:50,639 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/binaries/linux64/eqntott 2026-03-04T19:42:50,641 INFO copying build/lib/pyboolnet/binaries/linux64/eqntott/eqntott_linux64 -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/linux64/eqntott 2026-03-04T19:42:50,648 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/binaries/linux64/NuSMV-a 2026-03-04T19:42:50,649 INFO copying build/lib/pyboolnet/binaries/linux64/NuSMV-a/NuSMVa_linux64 -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/linux64/NuSMV-a 2026-03-04T19:42:50,744 INFO copying build/lib/pyboolnet/binaries/linux64/NuSMV-a/ltl2smv -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/linux64/NuSMV-a 2026-03-04T19:42:50,808 INFO copying build/lib/pyboolnet/binaries/linux64/NuSMV-a/libreadline.so.6 -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/linux64/NuSMV-a 2026-03-04T19:42:50,815 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/binaries/linux64/gringo-4.4.0 2026-03-04T19:42:50,817 INFO copying build/lib/pyboolnet/binaries/linux64/gringo-4.4.0/gringo -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/linux64/gringo-4.4.0 2026-03-04T19:42:50,861 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/binaries/linux64/clasp-3.1.1 2026-03-04T19:42:50,881 INFO copying build/lib/pyboolnet/binaries/linux64/clasp-3.1.1/clasp-3.1.1-x86-linux -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/linux64/clasp-3.1.1 2026-03-04T19:42:50,946 INFO copying build/lib/pyboolnet/binaries/linux64/settings.cfg -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/linux64 2026-03-04T19:42:50,948 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/binaries/mac64 2026-03-04T19:42:50,950 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/binaries/mac64/BNetToPrime 2026-03-04T19:42:50,951 INFO copying build/lib/pyboolnet/binaries/mac64/BNetToPrime/BNetToPrime_mac64 -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/mac64/BNetToPrime 2026-03-04T19:42:50,960 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/binaries/mac64/clasp-3.2.0 2026-03-04T19:42:50,961 INFO copying build/lib/pyboolnet/binaries/mac64/clasp-3.2.0/README -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/mac64/clasp-3.2.0 2026-03-04T19:42:50,963 INFO copying build/lib/pyboolnet/binaries/mac64/clasp-3.2.0/clasp-3.2.0_mac64 -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/mac64/clasp-3.2.0 2026-03-04T19:42:51,003 INFO copying build/lib/pyboolnet/binaries/mac64/clasp-3.2.0/COPYING -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/mac64/clasp-3.2.0 2026-03-04T19:42:51,006 INFO copying build/lib/pyboolnet/binaries/mac64/clasp-3.2.0/CHANGES -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/mac64/clasp-3.2.0 2026-03-04T19:42:51,010 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/binaries/mac64/espresso 2026-03-04T19:42:51,011 INFO copying build/lib/pyboolnet/binaries/mac64/espresso/espresso_mac64 -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/mac64/espresso 2026-03-04T19:42:51,019 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/binaries/mac64/eqntott 2026-03-04T19:42:51,020 INFO copying build/lib/pyboolnet/binaries/mac64/eqntott/eqntott_mac64 -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/mac64/eqntott 2026-03-04T19:42:51,024 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/binaries/mac64/NuSMV-a 2026-03-04T19:42:51,026 INFO copying build/lib/pyboolnet/binaries/mac64/NuSMV-a/ltl2smv -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/mac64/NuSMV-a 2026-03-04T19:42:51,085 INFO copying build/lib/pyboolnet/binaries/mac64/NuSMV-a/NuSMVa_mac64 -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/mac64/NuSMV-a 2026-03-04T19:42:51,142 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/binaries/mac64/gringo-4.4.0 2026-03-04T19:42:51,143 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/binaries/mac64/gringo-4.4.0/examples 2026-03-04T19:42:51,145 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/binaries/mac64/gringo-4.4.0/examples/queens 2026-03-04T19:42:51,146 INFO copying build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/examples/queens/queens2.lp -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/mac64/gringo-4.4.0/examples/queens 2026-03-04T19:42:51,148 INFO copying build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/examples/queens/README -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/mac64/gringo-4.4.0/examples/queens 2026-03-04T19:42:51,150 INFO copying build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/examples/queens/queens1.lp -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/mac64/gringo-4.4.0/examples/queens 2026-03-04T19:42:51,152 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/binaries/mac64/gringo-4.4.0/examples/rec-cond 2026-03-04T19:42:51,153 INFO copying build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/examples/rec-cond/instance.lp -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/mac64/gringo-4.4.0/examples/rec-cond 2026-03-04T19:42:51,155 INFO copying build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/examples/rec-cond/encoding.lp -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/mac64/gringo-4.4.0/examples/rec-cond 2026-03-04T19:42:51,157 INFO copying build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/examples/rec-cond/README -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/mac64/gringo-4.4.0/examples/rec-cond 2026-03-04T19:42:51,160 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie 2026-03-04T19:42:51,161 INFO copying build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie/README -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie 2026-03-04T19:42:51,163 INFO copying build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie/gbie1.lp -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie 2026-03-04T19:42:51,165 INFO copying build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie/gbie2.lp -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie 2026-03-04T19:42:51,167 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie/instances 2026-03-04T19:42:51,168 INFO copying build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie/instances/sat_02.lp -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie/instances 2026-03-04T19:42:51,192 INFO copying build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie/instances/sat_01.lp -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie/instances 2026-03-04T19:42:51,193 INFO copying build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie/instances/unsat_02.lp -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie/instances 2026-03-04T19:42:51,214 INFO copying build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie/instances/sat_03.lp -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie/instances 2026-03-04T19:42:51,236 INFO copying build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie/instances/unsat_01.lp -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie/instances 2026-03-04T19:42:51,238 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet/binaries/mac64/gringo-4.4.0/examples/toh 2026-03-04T19:42:51,239 INFO copying build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/examples/toh/tohE.lp -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/mac64/gringo-4.4.0/examples/toh 2026-03-04T19:42:51,241 INFO copying build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/examples/toh/README -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/mac64/gringo-4.4.0/examples/toh 2026-03-04T19:42:51,242 INFO copying build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/examples/toh/tohI.lp -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/mac64/gringo-4.4.0/examples/toh 2026-03-04T19:42:51,244 INFO copying build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/INSTALL -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/mac64/gringo-4.4.0 2026-03-04T19:42:51,247 INFO copying build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/README -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/mac64/gringo-4.4.0 2026-03-04T19:42:51,248 INFO copying build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/COPYING -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/mac64/gringo-4.4.0 2026-03-04T19:42:51,251 INFO copying build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/gringo_mac64 -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/mac64/gringo-4.4.0 2026-03-04T19:42:51,290 INFO copying build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/NOTES -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/mac64/gringo-4.4.0 2026-03-04T19:42:51,292 INFO copying build/lib/pyboolnet/binaries/mac64/gringo-4.4.0/CHANGES -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/mac64/gringo-4.4.0 2026-03-04T19:42:51,294 INFO copying build/lib/pyboolnet/binaries/mac64/settings.cfg -> build/bdist.linux-armv7l/wheel/./pyboolnet/binaries/mac64 2026-03-04T19:42:51,296 INFO copying build/lib/pyboolnet/boolean_logic.py -> build/bdist.linux-armv7l/wheel/./pyboolnet 2026-03-04T19:42:51,298 INFO copying build/lib/pyboolnet/prime_implicants.py -> build/bdist.linux-armv7l/wheel/./pyboolnet 2026-03-04T19:42:51,301 INFO creating build/bdist.linux-armv7l/wheel/tests 2026-03-04T19:42:51,303 INFO copying build/lib/tests/test_state_transition_graphs.py -> build/bdist.linux-armv7l/wheel/./tests 2026-03-04T19:42:51,305 INFO copying build/lib/tests/helpers.py -> build/bdist.linux-armv7l/wheel/./tests 2026-03-04T19:42:51,307 INFO copying build/lib/tests/test_percolation.py -> build/bdist.linux-armv7l/wheel/./tests 2026-03-04T19:42:51,308 INFO copying build/lib/tests/test_phenotypes.py -> build/bdist.linux-armv7l/wheel/./tests 2026-03-04T19:42:51,310 INFO copying build/lib/tests/test_helpers.py -> build/bdist.linux-armv7l/wheel/./tests 2026-03-04T19:42:51,312 INFO copying build/lib/tests/test_commitment_diagram.py -> build/bdist.linux-armv7l/wheel/./tests 2026-03-04T19:42:51,314 INFO copying build/lib/tests/test_external_bnet2primes.py -> build/bdist.linux-armv7l/wheel/./tests 2026-03-04T19:42:51,316 INFO copying build/lib/tests/test_boolean_normal_forms.py -> build/bdist.linux-armv7l/wheel/./tests 2026-03-04T19:42:51,317 INFO copying build/lib/tests/test_trap_spaces.py -> build/bdist.linux-armv7l/wheel/./tests 2026-03-04T19:42:51,320 INFO copying build/lib/tests/test_attractors.py -> build/bdist.linux-armv7l/wheel/./tests 2026-03-04T19:42:51,322 INFO copying build/lib/tests/test_model_checking.py -> build/bdist.linux-armv7l/wheel/./tests 2026-03-04T19:42:51,324 INFO copying build/lib/tests/test_file_exchange.py -> build/bdist.linux-armv7l/wheel/./tests 2026-03-04T19:42:51,326 INFO copying build/lib/tests/test_boolean_logic.py -> build/bdist.linux-armv7l/wheel/./tests 2026-03-04T19:42:51,328 INFO copying build/lib/tests/test_state_space.py -> build/bdist.linux-armv7l/wheel/./tests 2026-03-04T19:42:51,330 INFO copying build/lib/tests/test_basins_of_attraction.py -> build/bdist.linux-armv7l/wheel/./tests 2026-03-04T19:42:51,331 INFO copying build/lib/tests/test_temporal_queries.py -> build/bdist.linux-armv7l/wheel/./tests 2026-03-04T19:42:51,333 INFO copying build/lib/tests/test_prime_implicants.py -> build/bdist.linux-armv7l/wheel/./tests 2026-03-04T19:42:51,336 INFO creating build/bdist.linux-armv7l/wheel/tests/command_line_tool 2026-03-04T19:42:51,337 INFO copying build/lib/tests/command_line_tool/trap_spaces.py -> build/bdist.linux-armv7l/wheel/./tests/command_line_tool 2026-03-04T19:42:51,339 INFO copying build/lib/tests/command_line_tool/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/command_line_tool 2026-03-04T19:42:51,341 INFO copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./tests 2026-03-04T19:42:51,342 INFO copying build/lib/tests/test_network_generators.py -> build/bdist.linux-armv7l/wheel/./tests 2026-03-04T19:42:51,344 INFO copying build/lib/tests/test_interaction_graphs.py -> build/bdist.linux-armv7l/wheel/./tests 2026-03-04T19:42:51,346 INFO running install_egg_info 2026-03-04T19:42:51,382 INFO Copying pyboolnet.egg-info to build/bdist.linux-armv7l/wheel/./pyboolnet-3.0.16-py3.11.egg-info 2026-03-04T19:42:51,395 INFO running install_scripts 2026-03-04T19:42:51,406 INFO creating build/bdist.linux-armv7l/wheel/pyboolnet-3.0.16.dist-info/WHEEL 2026-03-04T19:42:51,408 INFO creating '/tmp/pip-wheel-g2a4hlh7/pyboolnet-3.0.16-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-03-04T19:42:51,411 INFO adding 'pyboolnet/__init__.py' 2026-03-04T19:42:51,415 INFO adding 'pyboolnet/attractors.py' 2026-03-04T19:42:51,417 INFO adding 'pyboolnet/basins_of_attraction.py' 2026-03-04T19:42:51,419 INFO adding 'pyboolnet/boolean_logic.py' 2026-03-04T19:42:51,421 INFO adding 'pyboolnet/boolean_normal_forms.py' 2026-03-04T19:42:51,424 INFO adding 'pyboolnet/commitment_diagrams.py' 2026-03-04T19:42:51,427 INFO adding 'pyboolnet/digraphs.py' 2026-03-04T19:42:51,429 INFO adding 'pyboolnet/file_exchange.py' 2026-03-04T19:42:51,430 INFO adding 'pyboolnet/helpers.py' 2026-03-04T19:42:51,433 INFO adding 'pyboolnet/interaction_graphs.py' 2026-03-04T19:42:51,436 INFO adding 'pyboolnet/model_checking.py' 2026-03-04T19:42:51,437 INFO adding 'pyboolnet/network_generators.py' 2026-03-04T19:42:51,440 INFO adding 'pyboolnet/phenotypes.py' 2026-03-04T19:42:51,442 INFO adding 'pyboolnet/prime_implicants.py' 2026-03-04T19:42:51,444 INFO adding 'pyboolnet/state_space.py' 2026-03-04T19:42:51,449 INFO adding 'pyboolnet/state_transition_graphs.py' 2026-03-04T19:42:51,450 INFO adding 'pyboolnet/temporal_logic.py' 2026-03-04T19:42:51,452 INFO adding 'pyboolnet/trap_spaces.py' 2026-03-04T19:42:51,454 INFO adding 'pyboolnet/version.py' 2026-03-04T19:42:51,455 INFO adding 'pyboolnet/version.txt' 2026-03-04T19:42:51,457 INFO adding 'pyboolnet/binaries/conda/settings.cfg' 2026-03-04T19:42:51,458 INFO adding 'pyboolnet/binaries/linux64/settings.cfg' 2026-03-04T19:42:51,487 INFO adding 'pyboolnet/binaries/linux64/BNetToPrime/BNetToPrime_linux64' 2026-03-04T19:42:51,490 INFO adding 'pyboolnet/binaries/linux64/BNetToPrime/CMakeLists.txt' 2026-03-04T19:42:51,491 INFO adding 'pyboolnet/binaries/linux64/BNetToPrime/README.md' 2026-03-04T19:42:51,493 INFO adding 'pyboolnet/binaries/linux64/BNetToPrime/main.cpp' 2026-03-04T19:42:52,290 INFO adding 'pyboolnet/binaries/linux64/NuSMV-a/NuSMVa_linux64' 2026-03-04T19:42:52,368 INFO adding 'pyboolnet/binaries/linux64/NuSMV-a/libreadline.so.6' 2026-03-04T19:42:53,007 INFO adding 'pyboolnet/binaries/linux64/NuSMV-a/ltl2smv' 2026-03-04T19:42:53,476 INFO adding 'pyboolnet/binaries/linux64/clasp-3.1.1/clasp-3.1.1-x86-linux' 2026-03-04T19:42:53,513 INFO adding 'pyboolnet/binaries/linux64/eqntott/eqntott_linux64' 2026-03-04T19:42:53,625 INFO adding 'pyboolnet/binaries/linux64/espresso/espresso_linux64' 2026-03-04T19:42:54,123 INFO adding 'pyboolnet/binaries/linux64/gringo-4.4.0/gringo' 2026-03-04T19:42:54,143 INFO adding 'pyboolnet/binaries/mac64/settings.cfg' 2026-03-04T19:42:54,202 INFO adding 'pyboolnet/binaries/mac64/BNetToPrime/BNetToPrime_mac64' 2026-03-04T19:42:54,920 INFO adding 'pyboolnet/binaries/mac64/NuSMV-a/NuSMVa_mac64' 2026-03-04T19:42:55,542 INFO adding 'pyboolnet/binaries/mac64/NuSMV-a/ltl2smv' 2026-03-04T19:42:55,568 INFO adding 'pyboolnet/binaries/mac64/clasp-3.2.0/CHANGES' 2026-03-04T19:42:55,572 INFO adding 'pyboolnet/binaries/mac64/clasp-3.2.0/COPYING' 2026-03-04T19:42:55,573 INFO adding 'pyboolnet/binaries/mac64/clasp-3.2.0/README' 2026-03-04T19:42:55,819 INFO adding 'pyboolnet/binaries/mac64/clasp-3.2.0/clasp-3.2.0_mac64' 2026-03-04T19:42:55,837 INFO adding 'pyboolnet/binaries/mac64/eqntott/eqntott_mac64' 2026-03-04T19:42:55,890 INFO adding 'pyboolnet/binaries/mac64/espresso/espresso_mac64' 2026-03-04T19:42:55,894 INFO adding 'pyboolnet/binaries/mac64/gringo-4.4.0/CHANGES' 2026-03-04T19:42:55,900 INFO adding 'pyboolnet/binaries/mac64/gringo-4.4.0/COPYING' 2026-03-04T19:42:55,902 INFO adding 'pyboolnet/binaries/mac64/gringo-4.4.0/INSTALL' 2026-03-04T19:42:55,903 INFO adding 'pyboolnet/binaries/mac64/gringo-4.4.0/NOTES' 2026-03-04T19:42:55,904 INFO adding 'pyboolnet/binaries/mac64/gringo-4.4.0/README' 2026-03-04T19:42:56,227 INFO adding 'pyboolnet/binaries/mac64/gringo-4.4.0/gringo_mac64' 2026-03-04T19:42:56,244 INFO adding 'pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie/README' 2026-03-04T19:42:56,245 INFO adding 'pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie/gbie1.lp' 2026-03-04T19:42:56,247 INFO adding 'pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie/gbie2.lp' 2026-03-04T19:42:56,249 INFO adding 'pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie/instances/sat_01.lp' 2026-03-04T19:42:56,420 INFO adding 'pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie/instances/sat_02.lp' 2026-03-04T19:42:56,576 INFO adding 'pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie/instances/sat_03.lp' 2026-03-04T19:42:56,585 INFO adding 'pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie/instances/unsat_01.lp' 2026-03-04T19:42:56,738 INFO adding 'pyboolnet/binaries/mac64/gringo-4.4.0/examples/gbie/instances/unsat_02.lp' 2026-03-04T19:42:56,747 INFO adding 'pyboolnet/binaries/mac64/gringo-4.4.0/examples/queens/README' 2026-03-04T19:42:56,748 INFO adding 'pyboolnet/binaries/mac64/gringo-4.4.0/examples/queens/queens1.lp' 2026-03-04T19:42:56,749 INFO adding 'pyboolnet/binaries/mac64/gringo-4.4.0/examples/queens/queens2.lp' 2026-03-04T19:42:56,751 INFO adding 'pyboolnet/binaries/mac64/gringo-4.4.0/examples/rec-cond/README' 2026-03-04T19:42:56,752 INFO adding 'pyboolnet/binaries/mac64/gringo-4.4.0/examples/rec-cond/encoding.lp' 2026-03-04T19:42:56,754 INFO adding 'pyboolnet/binaries/mac64/gringo-4.4.0/examples/rec-cond/instance.lp' 2026-03-04T19:42:56,755 INFO adding 'pyboolnet/binaries/mac64/gringo-4.4.0/examples/toh/README' 2026-03-04T19:42:56,757 INFO adding 'pyboolnet/binaries/mac64/gringo-4.4.0/examples/toh/tohE.lp' 2026-03-04T19:42:56,758 INFO adding 'pyboolnet/binaries/mac64/gringo-4.4.0/examples/toh/tohI.lp' 2026-03-04T19:42:56,760 INFO adding 'pyboolnet/binaries/win64/settings.cfg' 2026-03-04T19:42:56,806 INFO adding 'pyboolnet/binaries/win64/BNetToPrime/BNetToPrime_win64.exe' 2026-03-04T19:42:56,831 INFO adding 'pyboolnet/binaries/win64/BNetToPrime/libgcc_s_dw2-1.dll' 2026-03-04T19:42:56,991 INFO adding 'pyboolnet/binaries/win64/BNetToPrime/libstdc++-6.dll' 2026-03-04T19:42:57,550 INFO adding 'pyboolnet/binaries/win64/NuSMV-a/NuSMVa_win32.exe' 2026-03-04T19:42:57,574 INFO adding 'pyboolnet/binaries/win64/NuSMV-a/libatomic-1.dll' 2026-03-04T19:42:57,599 INFO adding 'pyboolnet/binaries/win64/NuSMV-a/libcharset-1.dll' 2026-03-04T19:42:57,675 INFO adding 'pyboolnet/binaries/win64/NuSMV-a/libexpat-1.dll' 2026-03-04T19:42:57,700 INFO adding 'pyboolnet/binaries/win64/NuSMV-a/libgcc_s_dw2-1.dll' 2026-03-04T19:42:58,005 INFO adding 'pyboolnet/binaries/win64/NuSMV-a/libgettextlib-0-18-3.dll' 2026-03-04T19:42:58,069 INFO adding 'pyboolnet/binaries/win64/NuSMV-a/libgettextpo-0.dll' 2026-03-04T19:42:58,119 INFO adding 'pyboolnet/binaries/win64/NuSMV-a/libgettextsrc-0-18-3.dll' 2026-03-04T19:42:58,246 INFO adding 'pyboolnet/binaries/win64/NuSMV-a/libgmp-10.dll' 2026-03-04T19:42:58,259 INFO adding 'pyboolnet/binaries/win64/NuSMV-a/libgmpxx-4.dll' 2026-03-04T19:42:58,283 INFO adding 'pyboolnet/binaries/win64/NuSMV-a/libgomp-1.dll' 2026-03-04T19:42:58,494 INFO adding 'pyboolnet/binaries/win64/NuSMV-a/libiconv-2.dll' 2026-03-04T19:42:58,589 INFO adding 'pyboolnet/binaries/win64/NuSMV-a/libintl-8.dll' 2026-03-04T19:42:58,602 INFO adding 'pyboolnet/binaries/win64/NuSMV-a/libltdl-7.dll' 2026-03-04T19:42:58,623 INFO adding 'pyboolnet/binaries/win64/NuSMV-a/libmpc-3.dll' 2026-03-04T19:42:58,715 INFO adding 'pyboolnet/binaries/win64/NuSMV-a/libmpfr-4.dll' 2026-03-04T19:42:58,815 INFO adding 'pyboolnet/binaries/win64/NuSMV-a/libquadmath-0.dll' 2026-03-04T19:42:58,821 INFO adding 'pyboolnet/binaries/win64/NuSMV-a/libssp-0.dll' 2026-03-04T19:42:58,980 INFO adding 'pyboolnet/binaries/win64/NuSMV-a/libstdc++-6.dll' 2026-03-04T19:42:58,992 INFO adding 'pyboolnet/binaries/win64/NuSMV-a/mingwm10.dll' 2026-03-04T19:42:59,017 INFO adding 'pyboolnet/binaries/win64/NuSMV-a/pthreadGC-3.dll' 2026-03-04T19:42:59,042 INFO adding 'pyboolnet/binaries/win64/NuSMV-a/zlib1.dll' 2026-03-04T19:42:59,049 INFO adding 'pyboolnet/binaries/win64/clasp-3.1.1/CHANGES' 2026-03-04T19:42:59,052 INFO adding 'pyboolnet/binaries/win64/clasp-3.1.1/COPYING' 2026-03-04T19:42:59,054 INFO adding 'pyboolnet/binaries/win64/clasp-3.1.1/README' 2026-03-04T19:42:59,252 INFO adding 'pyboolnet/binaries/win64/clasp-3.1.1/clasp-3.1.1_win64.exe' 2026-03-04T19:42:59,285 INFO adding 'pyboolnet/binaries/win64/eqntott/eqntott_win64.exe' 2026-03-04T19:42:59,411 INFO adding 'pyboolnet/binaries/win64/espresso/espresso_win64.exe' 2026-03-04T19:42:59,418 INFO adding 'pyboolnet/binaries/win64/gringo-4.4.0/CHANGES' 2026-03-04T19:42:59,424 INFO adding 'pyboolnet/binaries/win64/gringo-4.4.0/COPYING' 2026-03-04T19:42:59,426 INFO adding 'pyboolnet/binaries/win64/gringo-4.4.0/INSTALL' 2026-03-04T19:42:59,428 INFO adding 'pyboolnet/binaries/win64/gringo-4.4.0/NOTES' 2026-03-04T19:42:59,430 INFO adding 'pyboolnet/binaries/win64/gringo-4.4.0/README' 2026-03-04T19:42:59,775 INFO adding 'pyboolnet/binaries/win64/gringo-4.4.0/gringo_win64.exe' 2026-03-04T19:42:59,790 INFO adding 'pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie/README' 2026-03-04T19:42:59,792 INFO adding 'pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie/gbie1.lp' 2026-03-04T19:42:59,793 INFO adding 'pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie/gbie2.lp' 2026-03-04T19:42:59,794 INFO adding 'pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie/instances/sat_01.lp' 2026-03-04T19:42:59,965 INFO adding 'pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie/instances/sat_02.lp' 2026-03-04T19:43:00,122 INFO adding 'pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie/instances/sat_03.lp' 2026-03-04T19:43:00,131 INFO adding 'pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie/instances/unsat_01.lp' 2026-03-04T19:43:00,281 INFO adding 'pyboolnet/binaries/win64/gringo-4.4.0/examples/gbie/instances/unsat_02.lp' 2026-03-04T19:43:00,291 INFO adding 'pyboolnet/binaries/win64/gringo-4.4.0/examples/queens/README' 2026-03-04T19:43:00,292 INFO adding 'pyboolnet/binaries/win64/gringo-4.4.0/examples/queens/queens1.lp' 2026-03-04T19:43:00,293 INFO adding 'pyboolnet/binaries/win64/gringo-4.4.0/examples/queens/queens2.lp' 2026-03-04T19:43:00,295 INFO adding 'pyboolnet/binaries/win64/gringo-4.4.0/examples/rec-cond/README' 2026-03-04T19:43:00,296 INFO adding 'pyboolnet/binaries/win64/gringo-4.4.0/examples/rec-cond/encoding.lp' 2026-03-04T19:43:00,297 INFO adding 'pyboolnet/binaries/win64/gringo-4.4.0/examples/rec-cond/instance.lp' 2026-03-04T19:43:00,299 INFO adding 'pyboolnet/binaries/win64/gringo-4.4.0/examples/toh/README' 2026-03-04T19:43:00,301 INFO adding 'pyboolnet/binaries/win64/gringo-4.4.0/examples/toh/tohE.lp' 2026-03-04T19:43:00,302 INFO adding 'pyboolnet/binaries/win64/gringo-4.4.0/examples/toh/tohI.lp' 2026-03-04T19:43:00,305 INFO adding 'pyboolnet/cli/__init__.py' 2026-03-04T19:43:00,306 INFO adding 'pyboolnet/cli/check_dependencies.py' 2026-03-04T19:43:00,308 INFO adding 'pyboolnet/cli/helpers.py' 2026-03-04T19:43:00,309 INFO adding 'pyboolnet/cli/main.py' 2026-03-04T19:43:00,311 INFO adding 'pyboolnet/cli/commands/__init__.py' 2026-03-04T19:43:00,312 INFO adding 'pyboolnet/cli/commands/check_dependencies.py' 2026-03-04T19:43:00,313 INFO adding 'pyboolnet/cli/commands/trap_spaces.py' 2026-03-04T19:43:00,315 INFO adding 'pyboolnet/external/__init__.py' 2026-03-04T19:43:00,316 INFO adding 'pyboolnet/external/bnet2primes.py' 2026-03-04T19:43:00,318 INFO adding 'pyboolnet/external/potassco.py' 2026-03-04T19:43:00,321 INFO adding 'pyboolnet/repository/README.md' 2026-03-04T19:43:00,323 INFO adding 'pyboolnet/repository/__init__.py' 2026-03-04T19:43:00,324 INFO adding 'pyboolnet/repository/jobs.py' 2026-03-04T19:43:00,327 INFO adding 'pyboolnet/repository/__pycache__/__init__.cpython-312.pyc' 2026-03-04T19:43:00,329 INFO adding 'pyboolnet/repository/arellano_rootstem/arellano_rootstem.bnet' 2026-03-04T19:43:00,331 INFO adding 'pyboolnet/repository/arellano_rootstem/arellano_rootstem_all_basins.pdf' 2026-03-04T19:43:00,333 INFO adding 'pyboolnet/repository/arellano_rootstem/arellano_rootstem_attractors.md' 2026-03-04T19:43:00,335 INFO adding 'pyboolnet/repository/arellano_rootstem/arellano_rootstem_commitment_diagram.pdf' 2026-03-04T19:43:00,338 INFO adding 'pyboolnet/repository/arellano_rootstem/arellano_rootstem_commitment_pie.pdf' 2026-03-04T19:43:00,340 INFO adding 'pyboolnet/repository/arellano_rootstem/arellano_rootstem_igraph.pdf' 2026-03-04T19:43:00,342 INFO adding 'pyboolnet/repository/arellano_rootstem/arellano_rootstem_strong_basins.pdf' 2026-03-04T19:43:00,344 INFO adding 'pyboolnet/repository/calzone_cellfate/calzone_cellfate.bnet' 2026-03-04T19:43:00,346 INFO adding 'pyboolnet/repository/dahlhaus_neuroplastoma/dahlhaus_neuroplastoma.bnet' 2026-03-04T19:43:00,348 INFO adding 'pyboolnet/repository/dahlhaus_neuroplastoma/dahlhaus_neuroplastoma_all_basins.pdf' 2026-03-04T19:43:00,350 INFO adding 'pyboolnet/repository/dahlhaus_neuroplastoma/dahlhaus_neuroplastoma_attractors.md' 2026-03-04T19:43:00,354 INFO adding 'pyboolnet/repository/dahlhaus_neuroplastoma/dahlhaus_neuroplastoma_attrs_async.json' 2026-03-04T19:43:00,357 INFO adding 'pyboolnet/repository/dahlhaus_neuroplastoma/dahlhaus_neuroplastoma_commitment_diagram.pdf' 2026-03-04T19:43:00,360 INFO adding 'pyboolnet/repository/dahlhaus_neuroplastoma/dahlhaus_neuroplastoma_commitment_pie.pdf' 2026-03-04T19:43:00,363 INFO adding 'pyboolnet/repository/dahlhaus_neuroplastoma/dahlhaus_neuroplastoma_igraph.pdf' 2026-03-04T19:43:00,366 INFO adding 'pyboolnet/repository/dahlhaus_neuroplastoma/dahlhaus_neuroplastoma_strong_basins.pdf' 2026-03-04T19:43:00,368 INFO adding 'pyboolnet/repository/davidich_yeast/davidich_yeast.bnet' 2026-03-04T19:43:00,370 INFO adding 'pyboolnet/repository/davidich_yeast/davidich_yeast_all_basins.pdf' 2026-03-04T19:43:00,372 INFO adding 'pyboolnet/repository/davidich_yeast/davidich_yeast_attractors.md' 2026-03-04T19:43:00,375 INFO adding 'pyboolnet/repository/davidich_yeast/davidich_yeast_commitment_diagram.pdf' 2026-03-04T19:43:00,378 INFO adding 'pyboolnet/repository/davidich_yeast/davidich_yeast_commitment_pie.pdf' 2026-03-04T19:43:00,380 INFO adding 'pyboolnet/repository/davidich_yeast/davidich_yeast_igraph.pdf' 2026-03-04T19:43:00,383 INFO adding 'pyboolnet/repository/davidich_yeast/davidich_yeast_strong_basins.pdf' 2026-03-04T19:43:00,385 INFO adding 'pyboolnet/repository/dinwoodie_life/dinwoodie_life.bnet' 2026-03-04T19:43:00,387 INFO adding 'pyboolnet/repository/dinwoodie_life/dinwoodie_life_all_basins.pdf' 2026-03-04T19:43:00,388 INFO adding 'pyboolnet/repository/dinwoodie_life/dinwoodie_life_attractors.md' 2026-03-04T19:43:00,392 INFO adding 'pyboolnet/repository/dinwoodie_life/dinwoodie_life_commitment_diagram.pdf' 2026-03-04T19:43:00,394 INFO adding 'pyboolnet/repository/dinwoodie_life/dinwoodie_life_commitment_pie.pdf' 2026-03-04T19:43:00,397 INFO adding 'pyboolnet/repository/dinwoodie_life/dinwoodie_life_igraph.pdf' 2026-03-04T19:43:00,399 INFO adding 'pyboolnet/repository/dinwoodie_life/dinwoodie_life_strong_basins.pdf' 2026-03-04T19:43:00,401 INFO adding 'pyboolnet/repository/dinwoodie_stomatal/dinwoodie_stomatal.bnet' 2026-03-04T19:43:00,403 INFO adding 'pyboolnet/repository/dinwoodie_stomatal/dinwoodie_stomatal_all_basins.pdf' 2026-03-04T19:43:00,405 INFO adding 'pyboolnet/repository/dinwoodie_stomatal/dinwoodie_stomatal_attractors.md' 2026-03-04T19:43:00,407 INFO adding 'pyboolnet/repository/dinwoodie_stomatal/dinwoodie_stomatal_commitment_diagram.pdf' 2026-03-04T19:43:00,409 INFO adding 'pyboolnet/repository/dinwoodie_stomatal/dinwoodie_stomatal_commitment_pie.pdf' 2026-03-04T19:43:00,411 INFO adding 'pyboolnet/repository/dinwoodie_stomatal/dinwoodie_stomatal_igraph.pdf' 2026-03-04T19:43:00,413 INFO adding 'pyboolnet/repository/dinwoodie_stomatal/dinwoodie_stomatal_strong_basins.pdf' 2026-03-04T19:43:00,415 INFO adding 'pyboolnet/repository/faure_cellcycle/faure_cellcycle.bnet' 2026-03-04T19:43:00,417 INFO adding 'pyboolnet/repository/faure_cellcycle/faure_cellcycle_all_basins.pdf' 2026-03-04T19:43:00,418 INFO adding 'pyboolnet/repository/faure_cellcycle/faure_cellcycle_attractors.md' 2026-03-04T19:43:00,421 INFO adding 'pyboolnet/repository/faure_cellcycle/faure_cellcycle_commitment_diagram.pdf' 2026-03-04T19:43:00,423 INFO adding 'pyboolnet/repository/faure_cellcycle/faure_cellcycle_commitment_pie.pdf' 2026-03-04T19:43:00,425 INFO adding 'pyboolnet/repository/faure_cellcycle/faure_cellcycle_igraph.pdf' 2026-03-04T19:43:00,427 INFO adding 'pyboolnet/repository/faure_cellcycle/faure_cellcycle_strong_basins.pdf' 2026-03-04T19:43:00,430 INFO adding 'pyboolnet/repository/grieco_mapk/grieco_mapk.bnet' 2026-03-04T19:43:00,434 INFO adding 'pyboolnet/repository/grieco_mapk/grieco_mapk_attrs_async.json' 2026-03-04T19:43:00,439 INFO adding 'pyboolnet/repository/grieco_mapk/grieco_mapk_attrs_sync.json' 2026-03-04T19:43:00,443 INFO adding 'pyboolnet/repository/grieco_mapk/grieco_mapk_igraph.pdf' 2026-03-04T19:43:00,445 INFO adding 'pyboolnet/repository/irons_yeast/irons_yeast.bnet' 2026-03-04T19:43:00,447 INFO adding 'pyboolnet/repository/irons_yeast/irons_yeast_all_basins.pdf' 2026-03-04T19:43:00,449 INFO adding 'pyboolnet/repository/irons_yeast/irons_yeast_attractors.md' 2026-03-04T19:43:00,451 INFO adding 'pyboolnet/repository/irons_yeast/irons_yeast_commitment_diagram.pdf' 2026-03-04T19:43:00,453 INFO adding 'pyboolnet/repository/irons_yeast/irons_yeast_commitment_pie.pdf' 2026-03-04T19:43:00,456 INFO adding 'pyboolnet/repository/irons_yeast/irons_yeast_igraph.pdf' 2026-03-04T19:43:00,458 INFO adding 'pyboolnet/repository/irons_yeast/irons_yeast_strong_basins.pdf' 2026-03-04T19:43:00,460 INFO adding 'pyboolnet/repository/jaoude_thdiff/jaoude_thdiff.bnet' 2026-03-04T19:43:00,465 INFO adding 'pyboolnet/repository/jaoude_thdiff/jaoude_thdiff_igraph.pdf' 2026-03-04T19:43:00,467 INFO adding 'pyboolnet/repository/klamt_tcr/klamt_tcr.bnet' 2026-03-04T19:43:00,469 INFO adding 'pyboolnet/repository/klamt_tcr/klamt_tcr_attractors.md' 2026-03-04T19:43:00,472 INFO adding 'pyboolnet/repository/klamt_tcr/klamt_tcr_igraph.pdf' 2026-03-04T19:43:00,474 INFO adding 'pyboolnet/repository/krumsiek_myeloid/krumsiek_myeloid.bnet' 2026-03-04T19:43:00,476 INFO adding 'pyboolnet/repository/multivalued/multivalued.bnet' 2026-03-04T19:43:00,477 INFO adding 'pyboolnet/repository/n12c5/n12c5.bnet' 2026-03-04T19:43:00,478 INFO adding 'pyboolnet/repository/n12c5/n12c5_attractors.md' 2026-03-04T19:43:00,481 INFO adding 'pyboolnet/repository/n12c5/n12c5_igraph.pdf' 2026-03-04T19:43:00,483 INFO adding 'pyboolnet/repository/n3s1c1a/n3s1c1a.bnet' 2026-03-04T19:43:00,485 INFO adding 'pyboolnet/repository/n3s1c1a/n3s1c1a_all_basins.pdf' 2026-03-04T19:43:00,486 INFO adding 'pyboolnet/repository/n3s1c1a/n3s1c1a_attractors.md' 2026-03-04T19:43:00,488 INFO adding 'pyboolnet/repository/n3s1c1a/n3s1c1a_commitment_diagram.pdf' 2026-03-04T19:43:00,490 INFO adding 'pyboolnet/repository/n3s1c1a/n3s1c1a_commitment_pie.pdf' 2026-03-04T19:43:00,492 INFO adding 'pyboolnet/repository/n3s1c1a/n3s1c1a_igraph.pdf' 2026-03-04T19:43:00,494 INFO adding 'pyboolnet/repository/n3s1c1a/n3s1c1a_strong_basins.pdf' 2026-03-04T19:43:00,497 INFO adding 'pyboolnet/repository/n3s1c1b/n3s1c1b.bnet' 2026-03-04T19:43:00,499 INFO adding 'pyboolnet/repository/n3s1c1b/n3s1c1b_all_basins.pdf' 2026-03-04T19:43:00,500 INFO adding 'pyboolnet/repository/n3s1c1b/n3s1c1b_attractors.md' 2026-03-04T19:43:00,503 INFO adding 'pyboolnet/repository/n3s1c1b/n3s1c1b_commitment_diagram.pdf' 2026-03-04T19:43:00,505 INFO adding 'pyboolnet/repository/n3s1c1b/n3s1c1b_commitment_pie.pdf' 2026-03-04T19:43:00,507 INFO adding 'pyboolnet/repository/n3s1c1b/n3s1c1b_igraph.pdf' 2026-03-04T19:43:00,509 INFO adding 'pyboolnet/repository/n3s1c1b/n3s1c1b_strong_basins.pdf' 2026-03-04T19:43:00,511 INFO adding 'pyboolnet/repository/n5s3/n5s3.bnet' 2026-03-04T19:43:00,513 INFO adding 'pyboolnet/repository/n5s3/n5s3_all_basins.pdf' 2026-03-04T19:43:00,514 INFO adding 'pyboolnet/repository/n5s3/n5s3_attractors.md' 2026-03-04T19:43:00,516 INFO adding 'pyboolnet/repository/n5s3/n5s3_commitment_diagram.pdf' 2026-03-04T19:43:00,519 INFO adding 'pyboolnet/repository/n5s3/n5s3_commitment_pie.pdf' 2026-03-04T19:43:00,521 INFO adding 'pyboolnet/repository/n5s3/n5s3_igraph.pdf' 2026-03-04T19:43:00,523 INFO adding 'pyboolnet/repository/n5s3/n5s3_strong_basins.pdf' 2026-03-04T19:43:00,525 INFO adding 'pyboolnet/repository/n6s1c2/n6s1c2.bnet' 2026-03-04T19:43:00,527 INFO adding 'pyboolnet/repository/n6s1c2/n6s1c2_all_basins.pdf' 2026-03-04T19:43:00,528 INFO adding 'pyboolnet/repository/n6s1c2/n6s1c2_attractors.md' 2026-03-04T19:43:00,531 INFO adding 'pyboolnet/repository/n6s1c2/n6s1c2_commitment_diagram.pdf' 2026-03-04T19:43:00,533 INFO adding 'pyboolnet/repository/n6s1c2/n6s1c2_commitment_pie.pdf' 2026-03-04T19:43:00,535 INFO adding 'pyboolnet/repository/n6s1c2/n6s1c2_igraph.pdf' 2026-03-04T19:43:00,537 INFO adding 'pyboolnet/repository/n6s1c2/n6s1c2_strong_basins.pdf' 2026-03-04T19:43:00,539 INFO adding 'pyboolnet/repository/n7s3/n7s3.bnet' 2026-03-04T19:43:00,541 INFO adding 'pyboolnet/repository/n7s3/n7s3_all_basins.pdf' 2026-03-04T19:43:00,542 INFO adding 'pyboolnet/repository/n7s3/n7s3_attractors.md' 2026-03-04T19:43:00,545 INFO adding 'pyboolnet/repository/n7s3/n7s3_commitment_diagram.pdf' 2026-03-04T19:43:00,547 INFO adding 'pyboolnet/repository/n7s3/n7s3_commitment_pie.pdf' 2026-03-04T19:43:00,549 INFO adding 'pyboolnet/repository/n7s3/n7s3_igraph.pdf' 2026-03-04T19:43:00,551 INFO adding 'pyboolnet/repository/n7s3/n7s3_strong_basins.pdf' 2026-03-04T19:43:00,553 INFO adding 'pyboolnet/repository/raf/raf.bnet' 2026-03-04T19:43:00,555 INFO adding 'pyboolnet/repository/raf/raf_all_basins.pdf' 2026-03-04T19:43:00,556 INFO adding 'pyboolnet/repository/raf/raf_attractors.md' 2026-03-04T19:43:00,558 INFO adding 'pyboolnet/repository/raf/raf_commitment_diagram.pdf' 2026-03-04T19:43:00,560 INFO adding 'pyboolnet/repository/raf/raf_commitment_pie.pdf' 2026-03-04T19:43:00,562 INFO adding 'pyboolnet/repository/raf/raf_igraph.pdf' 2026-03-04T19:43:00,564 INFO adding 'pyboolnet/repository/raf/raf_strong_basins.pdf' 2026-03-04T19:43:00,566 INFO adding 'pyboolnet/repository/randomnet_n15k3/randomnet_n15k3.bnet' 2026-03-04T19:43:00,568 INFO adding 'pyboolnet/repository/randomnet_n15k3/randomnet_n15k3_all_basins.pdf' 2026-03-04T19:43:00,569 INFO adding 'pyboolnet/repository/randomnet_n15k3/randomnet_n15k3_attractors.md' 2026-03-04T19:43:00,572 INFO adding 'pyboolnet/repository/randomnet_n15k3/randomnet_n15k3_commitment_diagram.pdf' 2026-03-04T19:43:00,574 INFO adding 'pyboolnet/repository/randomnet_n15k3/randomnet_n15k3_commitment_pie.pdf' 2026-03-04T19:43:00,576 INFO adding 'pyboolnet/repository/randomnet_n15k3/randomnet_n15k3_igraph.pdf' 2026-03-04T19:43:00,578 INFO adding 'pyboolnet/repository/randomnet_n15k3/randomnet_n15k3_strong_basins.pdf' 2026-03-04T19:43:00,580 INFO adding 'pyboolnet/repository/randomnet_n7k3/randomnet_n7k3.bnet' 2026-03-04T19:43:00,582 INFO adding 'pyboolnet/repository/randomnet_n7k3/randomnet_n7k3_all_basins.pdf' 2026-03-04T19:43:00,583 INFO adding 'pyboolnet/repository/randomnet_n7k3/randomnet_n7k3_attractors.md' 2026-03-04T19:43:00,586 INFO adding 'pyboolnet/repository/randomnet_n7k3/randomnet_n7k3_commitment_diagram.pdf' 2026-03-04T19:43:00,588 INFO adding 'pyboolnet/repository/randomnet_n7k3/randomnet_n7k3_commitment_pie.pdf' 2026-03-04T19:43:00,590 INFO adding 'pyboolnet/repository/randomnet_n7k3/randomnet_n7k3_igraph.pdf' 2026-03-04T19:43:00,593 INFO adding 'pyboolnet/repository/randomnet_n7k3/randomnet_n7k3_strong_basins.pdf' 2026-03-04T19:43:00,594 INFO adding 'pyboolnet/repository/remy_tumorigenesis/remy_tumorigenesis.bnet' 2026-03-04T19:43:00,596 INFO adding 'pyboolnet/repository/remy_tumorigenesis/remy_tumorigenesis_myversion.bnet' 2026-03-04T19:43:00,598 INFO adding 'pyboolnet/repository/saadatpour_guardcell/saadatpour_guardcell.bnet' 2026-03-04T19:43:00,600 INFO adding 'pyboolnet/repository/saadatpour_guardcell/saadatpour_guardcell_all_basins.pdf' 2026-03-04T19:43:00,602 INFO adding 'pyboolnet/repository/saadatpour_guardcell/saadatpour_guardcell_attractors.md' 2026-03-04T19:43:00,604 INFO adding 'pyboolnet/repository/saadatpour_guardcell/saadatpour_guardcell_commitment_diagram.pdf' 2026-03-04T19:43:00,606 INFO adding 'pyboolnet/repository/saadatpour_guardcell/saadatpour_guardcell_commitment_pie.pdf' 2026-03-04T19:43:00,608 INFO adding 'pyboolnet/repository/saadatpour_guardcell/saadatpour_guardcell_igraph.pdf' 2026-03-04T19:43:00,611 INFO adding 'pyboolnet/repository/saadatpour_guardcell/saadatpour_guardcell_strong_basins.pdf' 2026-03-04T19:43:00,613 INFO adding 'pyboolnet/repository/selvaggio_emt/selvaggio_emt.bnet' 2026-03-04T19:43:00,614 INFO adding 'pyboolnet/repository/tournier_apoptosis/tournier_apoptosis.bnet' 2026-03-04T19:43:00,617 INFO adding 'pyboolnet/repository/tournier_apoptosis/tournier_apoptosis_all_basins.pdf' 2026-03-04T19:43:00,618 INFO adding 'pyboolnet/repository/tournier_apoptosis/tournier_apoptosis_attractors.md' 2026-03-04T19:43:00,619 INFO adding 'pyboolnet/repository/tournier_apoptosis/tournier_apoptosis_attrs_async.json' 2026-03-04T19:43:00,621 INFO adding 'pyboolnet/repository/tournier_apoptosis/tournier_apoptosis_attrs_mixed.json' 2026-03-04T19:43:00,622 INFO adding 'pyboolnet/repository/tournier_apoptosis/tournier_apoptosis_attrs_sync.json' 2026-03-04T19:43:00,625 INFO adding 'pyboolnet/repository/tournier_apoptosis/tournier_apoptosis_commitment_diagram.pdf' 2026-03-04T19:43:00,627 INFO adding 'pyboolnet/repository/tournier_apoptosis/tournier_apoptosis_commitment_pie.pdf' 2026-03-04T19:43:00,629 INFO adding 'pyboolnet/repository/tournier_apoptosis/tournier_apoptosis_igraph.pdf' 2026-03-04T19:43:00,631 INFO adding 'pyboolnet/repository/tournier_apoptosis/tournier_apoptosis_strong_basins.pdf' 2026-03-04T19:43:00,633 INFO adding 'pyboolnet/repository/xiao_wnt5a/xiao_wnt5a.bnet' 2026-03-04T19:43:00,635 INFO adding 'pyboolnet/repository/xiao_wnt5a/xiao_wnt5a_all_basins.pdf' 2026-03-04T19:43:00,637 INFO adding 'pyboolnet/repository/xiao_wnt5a/xiao_wnt5a_attractors.md' 2026-03-04T19:43:00,639 INFO adding 'pyboolnet/repository/xiao_wnt5a/xiao_wnt5a_commitment_diagram.pdf' 2026-03-04T19:43:00,641 INFO adding 'pyboolnet/repository/xiao_wnt5a/xiao_wnt5a_commitment_pie.pdf' 2026-03-04T19:43:00,643 INFO adding 'pyboolnet/repository/xiao_wnt5a/xiao_wnt5a_igraph.pdf' 2026-03-04T19:43:00,645 INFO adding 'pyboolnet/repository/xiao_wnt5a/xiao_wnt5a_strong_basins.pdf' 2026-03-04T19:43:00,647 INFO adding 'pyboolnet/repository/zhang_tlgl/zhang_tlgl.bnet' 2026-03-04T19:43:00,649 INFO adding 'pyboolnet/repository/zhang_tlgl_v2/zhang_tlgl_v2.bnet' 2026-03-04T19:43:00,652 INFO adding 'tests/__init__.py' 2026-03-04T19:43:00,653 INFO adding 'tests/helpers.py' 2026-03-04T19:43:00,654 INFO adding 'tests/test_attractors.py' 2026-03-04T19:43:00,655 INFO adding 'tests/test_basins_of_attraction.py' 2026-03-04T19:43:00,657 INFO adding 'tests/test_boolean_logic.py' 2026-03-04T19:43:00,658 INFO adding 'tests/test_boolean_normal_forms.py' 2026-03-04T19:43:00,659 INFO adding 'tests/test_commitment_diagram.py' 2026-03-04T19:43:00,660 INFO adding 'tests/test_external_bnet2primes.py' 2026-03-04T19:43:00,661 INFO adding 'tests/test_file_exchange.py' 2026-03-04T19:43:00,663 INFO adding 'tests/test_helpers.py' 2026-03-04T19:43:00,664 INFO adding 'tests/test_interaction_graphs.py' 2026-03-04T19:43:00,665 INFO adding 'tests/test_model_checking.py' 2026-03-04T19:43:00,667 INFO adding 'tests/test_network_generators.py' 2026-03-04T19:43:00,668 INFO adding 'tests/test_percolation.py' 2026-03-04T19:43:00,669 INFO adding 'tests/test_phenotypes.py' 2026-03-04T19:43:00,671 INFO adding 'tests/test_prime_implicants.py' 2026-03-04T19:43:00,672 INFO adding 'tests/test_state_space.py' 2026-03-04T19:43:00,674 INFO adding 'tests/test_state_transition_graphs.py' 2026-03-04T19:43:00,675 INFO adding 'tests/test_temporal_queries.py' 2026-03-04T19:43:00,677 INFO adding 'tests/test_trap_spaces.py' 2026-03-04T19:43:00,679 INFO adding 'tests/command_line_tool/__init__.py' 2026-03-04T19:43:00,680 INFO adding 'tests/command_line_tool/trap_spaces.py' 2026-03-04T19:43:00,681 INFO adding 'pyboolnet-3.0.16.dist-info/METADATA' 2026-03-04T19:43:00,682 INFO adding 'pyboolnet-3.0.16.dist-info/WHEEL' 2026-03-04T19:43:00,683 INFO adding 'pyboolnet-3.0.16.dist-info/entry_points.txt' 2026-03-04T19:43:00,684 INFO adding 'pyboolnet-3.0.16.dist-info/top_level.txt' 2026-03-04T19:43:00,689 INFO adding 'pyboolnet-3.0.16.dist-info/RECORD' 2026-03-04T19:43:00,882 INFO removing build/bdist.linux-armv7l/wheel 2026-03-04T19:43:01,099 Building wheel for pyboolnet (setup.py): finished with status 'done' 2026-03-04T19:43:01,540 Created wheel for pyboolnet: filename=pyboolnet-3.0.16-py3-none-any.whl size=18671212 sha256=ea61198aebb573fbd28397c85d108038b27499e68bc15567baccb90f35e1b17a 2026-03-04T19:43:01,541 Stored in directory: /tmp/pip-ephem-wheel-cache-8_s76e68/wheels/ae/93/9e/8c0b9f96fa71379d7fa716e20a3fdf7b974b80255dad716ab9 2026-03-04T19:43:01,577 Successfully built pyboolnet 2026-03-04T19:43:02,029 Removed build tracker: '/tmp/pip-build-tracker-_nd9g5o7'