2026-03-04T20:29:22,996 Created temporary directory: /tmp/pip-ephem-wheel-cache-by8y_lap 2026-03-04T20:29:22,998 Created temporary directory: /tmp/pip-build-tracker-cyu0ffod 2026-03-04T20:29:22,999 Initialized build tracking at /tmp/pip-build-tracker-cyu0ffod 2026-03-04T20:29:22,999 Created build tracker: /tmp/pip-build-tracker-cyu0ffod 2026-03-04T20:29:23,000 Entered build tracker: /tmp/pip-build-tracker-cyu0ffod 2026-03-04T20:29:23,001 Created temporary directory: /tmp/pip-wheel-ltojzo8a 2026-03-04T20:29:23,003 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-04T20:29:23,006 Created temporary directory: /tmp/pip-ephem-wheel-cache-j9g6jmkw 2026-03-04T20:29:23,027 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-04T20:29:23,031 2 location(s) to search for versions of seqmat: 2026-03-04T20:29:23,031 * https://pypi.org/simple/seqmat/ 2026-03-04T20:29:23,031 * https://www.piwheels.org/simple/seqmat/ 2026-03-04T20:29:23,032 Fetching project page and analyzing links: https://pypi.org/simple/seqmat/ 2026-03-04T20:29:23,032 Getting page https://pypi.org/simple/seqmat/ 2026-03-04T20:29:23,034 Found index url https://pypi.org/simple 2026-03-04T20:29:23,184 Fetched page https://pypi.org/simple/seqmat/ as application/vnd.pypi.simple.v1+json 2026-03-04T20:29:23,205 Skipping link: No binaries permitted for seqmat: 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2026-03-04T20:29:23,225 Skipping link: No binaries permitted for seqmat: https://files.pythonhosted.org/packages/7d/78/24bb0de5b5156807a5c53a57f58ffeb0d8650c8a49941cebf82f8f391434/seqmat-0.1.12-py3-none-any.whl (from https://pypi.org/simple/seqmat/) (requires-python:>=3.10) 2026-03-04T20:29:23,226 Found link https://files.pythonhosted.org/packages/97/36/6d5ae7021375224d55fb5c5bb9d00b0ec08e1d2a0ae02a7ce7c60255c76d/seqmat-0.1.12.tar.gz (from https://pypi.org/simple/seqmat/) (requires-python:>=3.10), version: 0.1.12 2026-03-04T20:29:23,226 Skipping link: No binaries permitted for seqmat: https://files.pythonhosted.org/packages/50/8e/f6c0423aa6dd717823fb15b08002eb8227ef8a9b4da1e1d452d0e8eff2ac/seqmat-0.1.13-py3-none-any.whl (from https://pypi.org/simple/seqmat/) (requires-python:>=3.10) 2026-03-04T20:29:23,227 Found link https://files.pythonhosted.org/packages/c0/18/6aea9f02e6dc225e6a29802dc4623dc886b4a7ef20cca314e5fde45d75d5/seqmat-0.1.13.tar.gz (from https://pypi.org/simple/seqmat/) 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https://archive1.piwheels.org/simple/seqmat/seqmat-0.1.5-py3-none-any.whl#sha256=e4c725f88a3261b2b46ec7b7b75572964a9efc8712c42c8567ec608f2c9a08a8 (from https://www.piwheels.org/simple/seqmat/) (requires-python:>=3.8) 2026-03-04T20:29:23,530 Skipping link: No binaries permitted for seqmat: https://archive1.piwheels.org/simple/seqmat/seqmat-0.1.4-py3-none-any.whl#sha256=3ef0f2e02286de255d1731e64a08bc235c5085bf689f7918396b4a8982a14195 (from https://www.piwheels.org/simple/seqmat/) (requires-python:>=3.8) 2026-03-04T20:29:23,531 Skipping link: No binaries permitted for seqmat: https://archive1.piwheels.org/simple/seqmat/seqmat-0.1.2-py3-none-any.whl#sha256=81d72023993394f9a800b27d16616149672b2ea3c504ac8400b47c96ffa5d7e2 (from https://www.piwheels.org/simple/seqmat/) (requires-python:>=3.8) 2026-03-04T20:29:23,531 Skipping link: No binaries permitted for seqmat: https://archive1.piwheels.org/simple/seqmat/seqmat-0.1.1-py3-none-any.whl#sha256=fa42a4e0b266ac1e13c73a66c7885b3d1c3972eca867f81c739bc3583744f2d8 (from https://www.piwheels.org/simple/seqmat/) (requires-python:>=3.8) 2026-03-04T20:29:23,532 Skipping link: No binaries permitted for seqmat: https://archive1.piwheels.org/simple/seqmat/seqmat-0.1.0-py3-none-any.whl#sha256=4aac50f8ae8811ac5c12742f14fc069bb3f1181c8175af2941a4a8a1c96bb424 (from https://www.piwheels.org/simple/seqmat/) (requires-python:>=3.8) 2026-03-04T20:29:23,533 Skipping link: not a file: https://www.piwheels.org/simple/seqmat/ 2026-03-04T20:29:23,534 Skipping link: not a file: https://pypi.org/simple/seqmat/ 2026-03-04T20:29:23,559 Given no hashes to check 1 links for project 'seqmat': discarding no candidates 2026-03-04T20:29:23,577 Collecting seqmat==1.1.0 2026-03-04T20:29:23,580 Created temporary directory: /tmp/pip-unpack-8wsea6sn 2026-03-04T20:29:23,807 Downloading seqmat-1.1.0.tar.gz (59 kB) 2026-03-04T20:29:23,910 Added seqmat==1.1.0 from https://files.pythonhosted.org/packages/03/32/f9e88000dc1882cbeea77025c55e8650d6f52e6f2acd0a4e9737ea70ebde/seqmat-1.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-cyu0ffod' 2026-03-04T20:29:23,912 Running setup.py (path:/tmp/pip-wheel-ltojzo8a/seqmat_ff4090b18ad64d9da9016a5e23a6299c/setup.py) egg_info for package seqmat 2026-03-04T20:29:23,913 Created temporary directory: /tmp/pip-pip-egg-info-iqyvq9hy 2026-03-04T20:29:23,913 Preparing metadata (setup.py): started 2026-03-04T20:29:23,914 Running command python setup.py egg_info 2026-03-04T20:29:24,825 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-03-04T20:29:24,825 !! 2026-03-04T20:29:24,826 ******************************************************************************** 2026-03-04T20:29:24,827 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-03-04T20:29:24,828 License :: OSI Approved :: MIT License 2026-03-04T20:29:24,829 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-04T20:29:24,829 ******************************************************************************** 2026-03-04T20:29:24,831 !! 2026-03-04T20:29:24,831 self._finalize_license_expression() 2026-03-04T20:29:24,859 running egg_info 2026-03-04T20:29:24,887 creating /tmp/pip-pip-egg-info-iqyvq9hy/seqmat.egg-info 2026-03-04T20:29:24,888 writing /tmp/pip-pip-egg-info-iqyvq9hy/seqmat.egg-info/PKG-INFO 2026-03-04T20:29:24,895 writing dependency_links to /tmp/pip-pip-egg-info-iqyvq9hy/seqmat.egg-info/dependency_links.txt 2026-03-04T20:29:24,897 writing entry points to /tmp/pip-pip-egg-info-iqyvq9hy/seqmat.egg-info/entry_points.txt 2026-03-04T20:29:24,900 writing requirements to /tmp/pip-pip-egg-info-iqyvq9hy/seqmat.egg-info/requires.txt 2026-03-04T20:29:24,902 writing top-level names to /tmp/pip-pip-egg-info-iqyvq9hy/seqmat.egg-info/top_level.txt 2026-03-04T20:29:24,904 writing manifest file '/tmp/pip-pip-egg-info-iqyvq9hy/seqmat.egg-info/SOURCES.txt' 2026-03-04T20:29:24,996 reading manifest file '/tmp/pip-pip-egg-info-iqyvq9hy/seqmat.egg-info/SOURCES.txt' 2026-03-04T20:29:24,998 reading manifest template 'MANIFEST.in' 2026-03-04T20:29:25,007 adding license file 'LICENSE' 2026-03-04T20:29:25,010 writing manifest file '/tmp/pip-pip-egg-info-iqyvq9hy/seqmat.egg-info/SOURCES.txt' 2026-03-04T20:29:25,118 Preparing metadata (setup.py): finished with status 'done' 2026-03-04T20:29:25,124 Source in /tmp/pip-wheel-ltojzo8a/seqmat_ff4090b18ad64d9da9016a5e23a6299c has version 1.1.0, which satisfies requirement seqmat==1.1.0 from https://files.pythonhosted.org/packages/03/32/f9e88000dc1882cbeea77025c55e8650d6f52e6f2acd0a4e9737ea70ebde/seqmat-1.1.0.tar.gz 2026-03-04T20:29:25,125 Removed seqmat==1.1.0 from https://files.pythonhosted.org/packages/03/32/f9e88000dc1882cbeea77025c55e8650d6f52e6f2acd0a4e9737ea70ebde/seqmat-1.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-cyu0ffod' 2026-03-04T20:29:25,135 Created temporary directory: /tmp/pip-unpack-f8ommir7 2026-03-04T20:29:25,136 Building wheels for collected packages: seqmat 2026-03-04T20:29:25,141 Created temporary directory: /tmp/pip-wheel-yq19b_nd 2026-03-04T20:29:25,142 Building wheel for seqmat (setup.py): started 2026-03-04T20:29:25,143 Destination directory: /tmp/pip-wheel-yq19b_nd 2026-03-04T20:29:25,143 Running command python setup.py bdist_wheel 2026-03-04T20:29:26,215 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-03-04T20:29:26,216 !! 2026-03-04T20:29:26,217 ******************************************************************************** 2026-03-04T20:29:26,217 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-03-04T20:29:26,218 License :: OSI Approved :: MIT License 2026-03-04T20:29:26,219 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-04T20:29:26,219 ******************************************************************************** 2026-03-04T20:29:26,220 !! 2026-03-04T20:29:26,221 self._finalize_license_expression() 2026-03-04T20:29:26,221 running bdist_wheel 2026-03-04T20:29:26,349 running build 2026-03-04T20:29:26,350 running build_py 2026-03-04T20:29:26,382 creating build/lib/seqmat 2026-03-04T20:29:26,384 copying seqmat/utils.py -> build/lib/seqmat 2026-03-04T20:29:26,387 copying seqmat/cli.py -> build/lib/seqmat 2026-03-04T20:29:26,389 copying seqmat/lmdb_store.py -> build/lib/seqmat 2026-03-04T20:29:26,392 copying seqmat/seqmat.py -> build/lib/seqmat 2026-03-04T20:29:26,394 copying seqmat/__init__.py -> build/lib/seqmat 2026-03-04T20:29:26,396 copying seqmat/config.py -> build/lib/seqmat 2026-03-04T20:29:26,398 copying seqmat/gene.py -> build/lib/seqmat 2026-03-04T20:29:26,400 copying seqmat/sqlite_store.py -> build/lib/seqmat 2026-03-04T20:29:26,402 copying seqmat/transcript.py -> build/lib/seqmat 2026-03-04T20:29:26,405 creating build/lib/tests 2026-03-04T20:29:26,406 copying tests/test_seqmat.py -> build/lib/tests 2026-03-04T20:29:26,408 copying tests/test_gene.py -> build/lib/tests 2026-03-04T20:29:26,410 copying tests/__init__.py -> build/lib/tests 2026-03-04T20:29:26,411 running egg_info 2026-03-04T20:29:26,438 writing seqmat.egg-info/PKG-INFO 2026-03-04T20:29:26,444 writing dependency_links to seqmat.egg-info/dependency_links.txt 2026-03-04T20:29:26,445 writing entry points to seqmat.egg-info/entry_points.txt 2026-03-04T20:29:26,448 writing requirements to seqmat.egg-info/requires.txt 2026-03-04T20:29:26,449 writing top-level names to seqmat.egg-info/top_level.txt 2026-03-04T20:29:26,482 reading manifest file 'seqmat.egg-info/SOURCES.txt' 2026-03-04T20:29:26,485 reading manifest template 'MANIFEST.in' 2026-03-04T20:29:26,492 adding license file 'LICENSE' 2026-03-04T20:29:26,496 writing manifest file 'seqmat.egg-info/SOURCES.txt' 2026-03-04T20:29:26,526 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2026-03-04T20:29:26,526 !! 2026-03-04T20:29:26,527 ******************************************************************************** 2026-03-04T20:29:26,528 Please avoid running ``setup.py`` directly. 2026-03-04T20:29:26,529 Instead, use pypa/build, pypa/installer or other 2026-03-04T20:29:26,529 standards-based tools. 2026-03-04T20:29:26,530 This deprecation is overdue, please update your project and remove deprecated 2026-03-04T20:29:26,531 calls to avoid build errors in the future. 2026-03-04T20:29:26,532 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2026-03-04T20:29:26,533 ******************************************************************************** 2026-03-04T20:29:26,534 !! 2026-03-04T20:29:26,535 self.initialize_options() 2026-03-04T20:29:26,554 installing to build/bdist.linux-armv7l/wheel 2026-03-04T20:29:26,554 running install 2026-03-04T20:29:26,579 running install_lib 2026-03-04T20:29:26,605 creating build/bdist.linux-armv7l/wheel 2026-03-04T20:29:26,607 creating build/bdist.linux-armv7l/wheel/seqmat 2026-03-04T20:29:26,608 copying build/lib/seqmat/utils.py -> build/bdist.linux-armv7l/wheel/./seqmat 2026-03-04T20:29:26,611 copying build/lib/seqmat/cli.py -> build/bdist.linux-armv7l/wheel/./seqmat 2026-03-04T20:29:26,613 copying build/lib/seqmat/lmdb_store.py -> build/bdist.linux-armv7l/wheel/./seqmat 2026-03-04T20:29:26,616 copying build/lib/seqmat/seqmat.py -> build/bdist.linux-armv7l/wheel/./seqmat 2026-03-04T20:29:26,618 copying build/lib/seqmat/__init__.py -> build/bdist.linux-armv7l/wheel/./seqmat 2026-03-04T20:29:26,620 copying build/lib/seqmat/config.py -> build/bdist.linux-armv7l/wheel/./seqmat 2026-03-04T20:29:26,622 copying build/lib/seqmat/gene.py -> build/bdist.linux-armv7l/wheel/./seqmat 2026-03-04T20:29:26,624 copying build/lib/seqmat/sqlite_store.py -> build/bdist.linux-armv7l/wheel/./seqmat 2026-03-04T20:29:26,626 copying build/lib/seqmat/transcript.py -> build/bdist.linux-armv7l/wheel/./seqmat 2026-03-04T20:29:26,629 creating build/bdist.linux-armv7l/wheel/tests 2026-03-04T20:29:26,629 copying build/lib/tests/test_seqmat.py -> build/bdist.linux-armv7l/wheel/./tests 2026-03-04T20:29:26,632 copying build/lib/tests/test_gene.py -> build/bdist.linux-armv7l/wheel/./tests 2026-03-04T20:29:26,634 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./tests 2026-03-04T20:29:26,636 running install_egg_info 2026-03-04T20:29:26,668 Copying seqmat.egg-info to build/bdist.linux-armv7l/wheel/./seqmat-1.1.0-py3.11.egg-info 2026-03-04T20:29:26,680 running install_scripts 2026-03-04T20:29:26,692 creating build/bdist.linux-armv7l/wheel/seqmat-1.1.0.dist-info/WHEEL 2026-03-04T20:29:26,695 creating '/tmp/pip-wheel-yq19b_nd/seqmat-1.1.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-03-04T20:29:26,697 adding 'seqmat/__init__.py' 2026-03-04T20:29:26,699 adding 'seqmat/cli.py' 2026-03-04T20:29:26,701 adding 'seqmat/config.py' 2026-03-04T20:29:26,703 adding 'seqmat/gene.py' 2026-03-04T20:29:26,704 adding 'seqmat/lmdb_store.py' 2026-03-04T20:29:26,708 adding 'seqmat/seqmat.py' 2026-03-04T20:29:26,709 adding 'seqmat/sqlite_store.py' 2026-03-04T20:29:26,711 adding 'seqmat/transcript.py' 2026-03-04T20:29:26,718 adding 'seqmat/utils.py' 2026-03-04T20:29:26,721 adding 'seqmat-1.1.0.dist-info/licenses/LICENSE' 2026-03-04T20:29:26,723 adding 'tests/__init__.py' 2026-03-04T20:29:26,724 adding 'tests/test_gene.py' 2026-03-04T20:29:26,726 adding 'tests/test_seqmat.py' 2026-03-04T20:29:26,729 adding 'seqmat-1.1.0.dist-info/METADATA' 2026-03-04T20:29:26,730 adding 'seqmat-1.1.0.dist-info/WHEEL' 2026-03-04T20:29:26,731 adding 'seqmat-1.1.0.dist-info/entry_points.txt' 2026-03-04T20:29:26,732 adding 'seqmat-1.1.0.dist-info/top_level.txt' 2026-03-04T20:29:26,733 adding 'seqmat-1.1.0.dist-info/RECORD' 2026-03-04T20:29:26,735 removing build/bdist.linux-armv7l/wheel 2026-03-04T20:29:26,850 Building wheel for seqmat (setup.py): finished with status 'done' 2026-03-04T20:29:26,853 Created wheel for seqmat: filename=seqmat-1.1.0-py3-none-any.whl size=52059 sha256=166a0a113c206e2b8a567aac6a8a31461adb91fbd3ae5183b79aa187cb18bc07 2026-03-04T20:29:26,854 Stored in directory: /tmp/pip-ephem-wheel-cache-j9g6jmkw/wheels/96/e1/9f/602e468fe3c8ddbae23a5e904a7e8f12c33ec1662657e2f440 2026-03-04T20:29:26,871 Successfully built seqmat 2026-03-04T20:29:26,876 Removed build tracker: '/tmp/pip-build-tracker-cyu0ffod'