2026-03-05T03:51:48,642 Created temporary directory: /tmp/pip-ephem-wheel-cache-6ynppx0y 2026-03-05T03:51:48,644 Created temporary directory: /tmp/pip-build-tracker-d0f4_y4p 2026-03-05T03:51:48,644 Initialized build tracking at /tmp/pip-build-tracker-d0f4_y4p 2026-03-05T03:51:48,645 Created build tracker: /tmp/pip-build-tracker-d0f4_y4p 2026-03-05T03:51:48,645 Entered build tracker: /tmp/pip-build-tracker-d0f4_y4p 2026-03-05T03:51:48,646 Created temporary directory: /tmp/pip-wheel-9pmtboqb 2026-03-05T03:51:48,649 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-05T03:51:48,651 Created temporary directory: /tmp/pip-ephem-wheel-cache-k_gmacd5 2026-03-05T03:51:48,672 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-05T03:51:48,676 2 location(s) to search for versions of symbac: 2026-03-05T03:51:48,676 * https://pypi.org/simple/symbac/ 2026-03-05T03:51:48,676 * https://www.piwheels.org/simple/symbac/ 2026-03-05T03:51:48,677 Fetching project page and analyzing links: https://pypi.org/simple/symbac/ 2026-03-05T03:51:48,677 Getting page https://pypi.org/simple/symbac/ 2026-03-05T03:51:48,679 Found index url https://pypi.org/simple 2026-03-05T03:51:48,893 Fetched page https://pypi.org/simple/symbac/ as application/vnd.pypi.simple.v1+json 2026-03-05T03:51:48,898 Found link https://files.pythonhosted.org/packages/ed/dd/b576cd6f2c99801d3fa3b106fe81dd8435f0379ba6752dcdb4a9bef2a052/SyMBac-0.1.0.tar.gz (from https://pypi.org/simple/symbac/), version: 0.1.0 2026-03-05T03:51:48,899 Found link https://files.pythonhosted.org/packages/5c/9a/0711b93410576410a0038fe2a9fd277d1684f4635990c786edeb14ea1742/SyMBac-0.1.2.tar.gz (from https://pypi.org/simple/symbac/), version: 0.1.2 2026-03-05T03:51:48,900 Found link https://files.pythonhosted.org/packages/54/53/4841d1f1430b3d1c92d29477a8b6004d677da252db20e85c8948b42b3616/SyMBac-0.1.3.tar.gz (from https://pypi.org/simple/symbac/), version: 0.1.3 2026-03-05T03:51:48,900 Found link https://files.pythonhosted.org/packages/31/89/f1b1f95a6e9500c76926046f44d1ff23760b1512b4b87f22645620627ee2/SyMBac-0.1.4.tar.gz (from https://pypi.org/simple/symbac/), version: 0.1.4 2026-03-05T03:51:48,901 Found link https://files.pythonhosted.org/packages/49/a8/8011f4be0ab8ccec726988fcbe200462d10329894037208db1293b3bf4b5/SyMBac-0.1.5.tar.gz (from https://pypi.org/simple/symbac/), version: 0.1.5 2026-03-05T03:51:48,902 Found link https://files.pythonhosted.org/packages/b0/0c/0b59c25952bf7e19bcd157d74814c0009f5876d51e0c0f473e4d226bf636/SyMBac-0.1.6.tar.gz (from https://pypi.org/simple/symbac/), version: 0.1.6 2026-03-05T03:51:48,903 Found link https://files.pythonhosted.org/packages/77/5a/20d69aeeec53a2bf716275a084e3a9e6dd38cec13ce54132ceaa0895ce8d/SyMBac-0.1.8.tar.gz (from https://pypi.org/simple/symbac/), version: 0.1.8 2026-03-05T03:51:48,903 Found link https://files.pythonhosted.org/packages/d6/1c/452fb5556bd679036ab50da899ffb76c79ec2608f89f70530a66fb691407/SyMBac-0.1.9.tar.gz (from https://pypi.org/simple/symbac/), version: 0.1.9 2026-03-05T03:51:48,904 Found link https://files.pythonhosted.org/packages/56/05/0aa737090207a5ffd05c5a67757570a2dc3666a7aa47dec0d229ea4ed93c/SyMBac-0.1.10.tar.gz (from https://pypi.org/simple/symbac/), version: 0.1.10 2026-03-05T03:51:48,904 Found link https://files.pythonhosted.org/packages/35/c9/0b158ee65ab06486d6490484e82c55bc0e884711d8e7a805591c798e99c7/SyMBac-0.2.0.tar.gz (from https://pypi.org/simple/symbac/), version: 0.2.0 2026-03-05T03:51:48,905 Skipping link: No binaries permitted for symbac: https://files.pythonhosted.org/packages/9f/74/998bf98b305bc9bd9c2cdc9014bd5925b2f071050e3f98ffd2ae8f5ace33/SyMBac-0.3.0-py3-none-any.whl (from https://pypi.org/simple/symbac/) 2026-03-05T03:51:48,906 Found link https://files.pythonhosted.org/packages/34/cd/c836dd51ea484cfc79c4120cfbff2df25a81841d01eca9aceaa601c29703/SyMBac-0.3.0.tar.gz (from https://pypi.org/simple/symbac/), version: 0.3.0 2026-03-05T03:51:48,907 Skipping link: No binaries permitted for symbac: https://files.pythonhosted.org/packages/6f/43/8e15dec40cc95179247006897d8388f2848159751b1a6888c5314aeaf9bf/SyMBac-0.3.1-py3-none-any.whl (from https://pypi.org/simple/symbac/) 2026-03-05T03:51:48,907 Found link https://files.pythonhosted.org/packages/07/f4/f598ad8aaac1f09d3c7f22c39d1a13b7631f84bc86cabbb6283ada7be8f9/SyMBac-0.3.1.tar.gz (from https://pypi.org/simple/symbac/), version: 0.3.1 2026-03-05T03:51:48,908 Skipping link: No binaries permitted for symbac: https://files.pythonhosted.org/packages/94/02/e5039f315ddd31f97fb55b164ed464fe00d51ac0dd8b2bf4404e3ee9227c/SyMBac-0.4.0-py3-none-any.whl (from https://pypi.org/simple/symbac/) 2026-03-05T03:51:48,908 Skipping link: No binaries permitted for symbac: https://files.pythonhosted.org/packages/05/6f/ad6d77721bd0e4b5925797346c76752439580211901317029df912c20e72/symbac-0.5.0-py3-none-any.whl (from https://pypi.org/simple/symbac/) (requires-python:>=3.9) 2026-03-05T03:51:48,909 Found link https://files.pythonhosted.org/packages/94/d1/01bff29abd84411138f73da849342808a9e236b0f852c9306b006c14f6eb/symbac-0.5.0.tar.gz (from https://pypi.org/simple/symbac/) (requires-python:>=3.9), version: 0.5.0 2026-03-05T03:51:48,910 Skipping link: No binaries permitted for symbac: https://files.pythonhosted.org/packages/1b/d8/bc1b5300e8c1153f1723818f9816e210ea9060c438d8a6294fdccf379e2e/symbac-0.5.1-py3-none-any.whl (from https://pypi.org/simple/symbac/) (requires-python:>=3.9) 2026-03-05T03:51:48,910 Found link https://files.pythonhosted.org/packages/0c/31/5df2e10e6324626508d56c9bc17b77ee2b11486b09ff2050f8778bfcdd94/symbac-0.5.1.tar.gz (from https://pypi.org/simple/symbac/) (requires-python:>=3.9), version: 0.5.1 2026-03-05T03:51:48,911 Skipping link: No binaries permitted for symbac: https://files.pythonhosted.org/packages/74/8f/1d2c163ab4e7c9fb1032256124813081356aad67889694253e513741f63c/symbac-0.5.2-py3-none-any.whl (from https://pypi.org/simple/symbac/) (requires-python:>=3.9) 2026-03-05T03:51:48,912 Found link https://files.pythonhosted.org/packages/c1/48/df82b3f3c4bc187147eba79c83392d3c79a40efd54ba81f6e8d8b9ea8c35/symbac-0.5.2.tar.gz (from https://pypi.org/simple/symbac/) (requires-python:>=3.9), version: 0.5.2 2026-03-05T03:51:48,913 Fetching project page and analyzing links: https://www.piwheels.org/simple/symbac/ 2026-03-05T03:51:48,913 Getting page https://www.piwheels.org/simple/symbac/ 2026-03-05T03:51:48,915 Found index url https://www.piwheels.org/simple 2026-03-05T03:51:49,072 Fetched page https://www.piwheels.org/simple/symbac/ as text/html 2026-03-05T03:51:49,076 Skipping link: No binaries permitted for symbac: https://archive1.piwheels.org/simple/symbac/SyMBac-0.3.1-py3-none-any.whl#sha256=19276525fe41697178ee31ce68b95d317d5db474fc17214f02e1c6975fa2814a (from https://www.piwheels.org/simple/symbac/) 2026-03-05T03:51:49,077 Skipping link: No binaries permitted for symbac: https://archive1.piwheels.org/simple/symbac/SyMBac-0.3.0-py3-none-any.whl#sha256=58c7485f4d67c4598368ef3b026e7b795e13f6bdd9779790ab56244a5177165c (from https://www.piwheels.org/simple/symbac/) 2026-03-05T03:51:49,077 Skipping link: No binaries permitted for symbac: https://archive1.piwheels.org/simple/symbac/SyMBac-0.2.0-py3-none-any.whl#sha256=7601c6e9bc0e886acd67b9214cea27567e81cb4e838d87c39f8b12665d6ccd40 (from https://www.piwheels.org/simple/symbac/) 2026-03-05T03:51:49,078 Skipping link: No binaries permitted for symbac: https://archive1.piwheels.org/simple/symbac/SyMBac-0.1.10-py3-none-any.whl#sha256=825099cef2ae3ab888dcf946c8f8a20a0e3046a96f0e3e50d39f63e520b4415e (from https://www.piwheels.org/simple/symbac/) 2026-03-05T03:51:49,079 Skipping link: No binaries permitted for symbac: https://archive1.piwheels.org/simple/symbac/SyMBac-0.1.9-py3-none-any.whl#sha256=16af52ee8ae2b81cdc26bd022400026b98dc2351444d322360a7ece41a43cf19 (from https://www.piwheels.org/simple/symbac/) 2026-03-05T03:51:49,079 Skipping link: No binaries permitted for symbac: https://archive1.piwheels.org/simple/symbac/SyMBac-0.1.8-py3-none-any.whl#sha256=702ce3f20913ed66b12089ce78a7e0c7355e41652dc54693987269121cbe93ce (from https://www.piwheels.org/simple/symbac/) 2026-03-05T03:51:49,080 Skipping link: No binaries permitted for symbac: https://archive1.piwheels.org/simple/symbac/SyMBac-0.1.6-py3-none-any.whl#sha256=6407316b6941da22527d98ca29e4d43ebd5afdd33e42b18c95ba044f9a0060e7 (from https://www.piwheels.org/simple/symbac/) 2026-03-05T03:51:49,080 Skipping link: No binaries permitted for symbac: https://archive1.piwheels.org/simple/symbac/SyMBac-0.1.5-py3-none-any.whl#sha256=6d3211592ee08162914b4659ff8ef58779ba29c56494cdb53829ddef46f112ef (from https://www.piwheels.org/simple/symbac/) 2026-03-05T03:51:49,081 Skipping link: No binaries permitted for symbac: https://archive1.piwheels.org/simple/symbac/SyMBac-0.1.4-py3-none-any.whl#sha256=06b114e2d6fe6ddf9af868bdfcbabd5e98398a70e4ea2bb780a6d756d8b38488 (from https://www.piwheels.org/simple/symbac/) 2026-03-05T03:51:49,081 Skipping link: No binaries permitted for symbac: https://archive1.piwheels.org/simple/symbac/SyMBac-0.1.3-py3-none-any.whl#sha256=a8d211d6a06ee57e25dc9a2dadda07ef4f40359d80cbbc67c776cbe1f848cb53 (from https://www.piwheels.org/simple/symbac/) 2026-03-05T03:51:49,081 Skipping link: No binaries permitted for symbac: https://archive1.piwheels.org/simple/symbac/SyMBac-0.1.2-py3-none-any.whl#sha256=dcdb4715506bd878560597bf4a9ac87730be567a4102cf484101fad7bf31fd57 (from https://www.piwheels.org/simple/symbac/) 2026-03-05T03:51:49,082 Skipping link: No binaries permitted for symbac: https://archive1.piwheels.org/simple/symbac/SyMBac-0.1.0-py3-none-any.whl#sha256=8737c80a6cb3eddcd955a1bf4f5c7ee243dbb1974bc5002d167081bd69e7c482 (from https://www.piwheels.org/simple/symbac/) 2026-03-05T03:51:49,082 Skipping link: not a file: https://www.piwheels.org/simple/symbac/ 2026-03-05T03:51:49,083 Skipping link: not a file: https://pypi.org/simple/symbac/ 2026-03-05T03:51:49,103 Given no hashes to check 1 links for project 'symbac': discarding no candidates 2026-03-05T03:51:49,121 Collecting symbac==0.5.0 2026-03-05T03:51:49,124 Created temporary directory: /tmp/pip-unpack-vil9jmjt 2026-03-05T03:51:49,259 Downloading symbac-0.5.0.tar.gz (206 kB) 2026-03-05T03:51:49,497 Added symbac==0.5.0 from https://files.pythonhosted.org/packages/94/d1/01bff29abd84411138f73da849342808a9e236b0f852c9306b006c14f6eb/symbac-0.5.0.tar.gz to build tracker '/tmp/pip-build-tracker-d0f4_y4p' 2026-03-05T03:51:49,502 Created temporary directory: /tmp/pip-build-env-54zvvv8p 2026-03-05T03:51:49,506 Installing build dependencies: started 2026-03-05T03:51:49,507 Running command pip subprocess to install build dependencies 2026-03-05T03:51:50,665 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-03-05T03:51:51,255 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-05T03:51:51,278 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-05T03:51:52,994 Collecting setuptools>=64 2026-03-05T03:51:53,068 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.0-py3-none-any.whl (1.0 MB) 2026-03-05T03:51:56,028 Installing collected packages: setuptools 2026-03-05T03:51:59,001 Successfully installed setuptools-82.0.0 2026-03-05T03:51:59,266 Installing build dependencies: finished with status 'done' 2026-03-05T03:51:59,273 Getting requirements to build wheel: started 2026-03-05T03:51:59,274 Running command Getting requirements to build wheel 2026-03-05T03:51:59,968 running egg_info 2026-03-05T03:51:59,974 writing SyMBac.egg-info/PKG-INFO 2026-03-05T03:51:59,979 writing dependency_links to SyMBac.egg-info/dependency_links.txt 2026-03-05T03:51:59,982 writing requirements to SyMBac.egg-info/requires.txt 2026-03-05T03:51:59,983 writing top-level names to SyMBac.egg-info/top_level.txt 2026-03-05T03:52:00,009 reading manifest file 'SyMBac.egg-info/SOURCES.txt' 2026-03-05T03:52:00,014 adding license file 'LICENSE' 2026-03-05T03:52:00,019 writing manifest file 'SyMBac.egg-info/SOURCES.txt' 2026-03-05T03:52:00,116 Getting requirements to build wheel: finished with status 'done' 2026-03-05T03:52:00,119 Created temporary directory: /tmp/pip-modern-metadata-t1rn3b9g 2026-03-05T03:52:00,121 Preparing metadata (pyproject.toml): started 2026-03-05T03:52:00,122 Running command Preparing metadata (pyproject.toml) 2026-03-05T03:52:00,800 running dist_info 2026-03-05T03:52:00,810 creating /tmp/pip-modern-metadata-t1rn3b9g/SyMBac.egg-info 2026-03-05T03:52:00,811 writing /tmp/pip-modern-metadata-t1rn3b9g/SyMBac.egg-info/PKG-INFO 2026-03-05T03:52:00,816 writing dependency_links to /tmp/pip-modern-metadata-t1rn3b9g/SyMBac.egg-info/dependency_links.txt 2026-03-05T03:52:00,819 writing requirements to /tmp/pip-modern-metadata-t1rn3b9g/SyMBac.egg-info/requires.txt 2026-03-05T03:52:00,820 writing top-level names to /tmp/pip-modern-metadata-t1rn3b9g/SyMBac.egg-info/top_level.txt 2026-03-05T03:52:00,821 writing manifest file '/tmp/pip-modern-metadata-t1rn3b9g/SyMBac.egg-info/SOURCES.txt' 2026-03-05T03:52:00,846 reading manifest file '/tmp/pip-modern-metadata-t1rn3b9g/SyMBac.egg-info/SOURCES.txt' 2026-03-05T03:52:00,847 adding license file 'LICENSE' 2026-03-05T03:52:00,852 writing manifest file '/tmp/pip-modern-metadata-t1rn3b9g/SyMBac.egg-info/SOURCES.txt' 2026-03-05T03:52:00,853 creating '/tmp/pip-modern-metadata-t1rn3b9g/symbac-0.5.0.dist-info' 2026-03-05T03:52:00,975 Preparing metadata (pyproject.toml): finished with status 'done' 2026-03-05T03:52:00,980 Source in /tmp/pip-wheel-9pmtboqb/symbac_677cb6ee17c64c4890750e87c73e9565 has version 0.5.0, which satisfies requirement symbac==0.5.0 from https://files.pythonhosted.org/packages/94/d1/01bff29abd84411138f73da849342808a9e236b0f852c9306b006c14f6eb/symbac-0.5.0.tar.gz 2026-03-05T03:52:00,981 Removed symbac==0.5.0 from https://files.pythonhosted.org/packages/94/d1/01bff29abd84411138f73da849342808a9e236b0f852c9306b006c14f6eb/symbac-0.5.0.tar.gz from build tracker '/tmp/pip-build-tracker-d0f4_y4p' 2026-03-05T03:52:00,987 Created temporary directory: /tmp/pip-unpack-to6h7at7 2026-03-05T03:52:00,988 Building wheels for collected packages: symbac 2026-03-05T03:52:00,992 Created temporary directory: /tmp/pip-wheel-wzt32svc 2026-03-05T03:52:00,993 Destination directory: /tmp/pip-wheel-wzt32svc 2026-03-05T03:52:00,995 Building wheel for symbac (pyproject.toml): started 2026-03-05T03:52:00,996 Running command Building wheel for symbac (pyproject.toml) 2026-03-05T03:52:01,627 running bdist_wheel 2026-03-05T03:52:01,644 running build 2026-03-05T03:52:01,644 running build_py 2026-03-05T03:52:01,651 creating build/lib/SyMBac 2026-03-05T03:52:01,653 copying SyMBac/cell_simulation.py -> build/lib/SyMBac 2026-03-05T03:52:01,655 copying SyMBac/PSF.py -> build/lib/SyMBac 2026-03-05T03:52:01,657 copying SyMBac/pySHINE.py -> build/lib/SyMBac 2026-03-05T03:52:01,660 copying SyMBac/simulation.py -> build/lib/SyMBac 2026-03-05T03:52:01,662 copying SyMBac/trench_geometry.py -> build/lib/SyMBac 2026-03-05T03:52:01,664 copying SyMBac/cell_snapshot.py -> build/lib/SyMBac 2026-03-05T03:52:01,666 copying SyMBac/renderer.py -> build/lib/SyMBac 2026-03-05T03:52:01,669 copying SyMBac/colony_renderer.py -> build/lib/SyMBac 2026-03-05T03:52:01,672 copying SyMBac/auto_optimise.py -> build/lib/SyMBac 2026-03-05T03:52:01,674 copying SyMBac/cell.py -> build/lib/SyMBac 2026-03-05T03:52:01,676 copying SyMBac/__init__.py -> build/lib/SyMBac 2026-03-05T03:52:01,678 copying SyMBac/metrics.py -> build/lib/SyMBac 2026-03-05T03:52:01,680 copying SyMBac/_deprecation.py -> build/lib/SyMBac 2026-03-05T03:52:01,682 copying SyMBac/drawing.py -> build/lib/SyMBac 2026-03-05T03:52:01,684 copying SyMBac/misc.py -> build/lib/SyMBac 2026-03-05T03:52:01,686 copying SyMBac/cell_geometry.py -> build/lib/SyMBac 2026-03-05T03:52:01,688 copying SyMBac/colony_simulation.py -> build/lib/SyMBac 2026-03-05T03:52:01,690 copying SyMBac/lineage.py -> build/lib/SyMBac 2026-03-05T03:52:01,693 creating build/lib/SyMBac/physics 2026-03-05T03:52:01,694 copying SyMBac/physics/microfluidic_geometry.py -> build/lib/SyMBac/physics 2026-03-05T03:52:01,696 copying SyMBac/physics/physics_representation.py -> build/lib/SyMBac/physics 2026-03-05T03:52:01,699 copying SyMBac/physics/joints.py -> build/lib/SyMBac/physics 2026-03-05T03:52:01,700 copying SyMBac/physics/config.py -> build/lib/SyMBac/physics 2026-03-05T03:52:01,703 copying SyMBac/physics/division_manager.py -> build/lib/SyMBac/physics 2026-03-05T03:52:01,705 copying SyMBac/physics/simulator.py -> build/lib/SyMBac/physics 2026-03-05T03:52:01,707 copying SyMBac/physics/__init__.py -> build/lib/SyMBac/physics 2026-03-05T03:52:01,709 copying SyMBac/physics/colony.py -> build/lib/SyMBac/physics 2026-03-05T03:52:01,711 copying SyMBac/physics/growth_manager.py -> build/lib/SyMBac/physics 2026-03-05T03:52:01,713 copying SyMBac/physics/simcell.py -> build/lib/SyMBac/physics 2026-03-05T03:52:01,715 copying SyMBac/physics/segments.py -> build/lib/SyMBac/physics 2026-03-05T03:52:01,718 creating build/lib/SyMBac/external 2026-03-05T03:52:01,719 copying SyMBac/external/__init__.py -> build/lib/SyMBac/external 2026-03-05T03:52:01,721 creating build/lib/SyMBac/deep_learning 2026-03-05T03:52:01,722 copying SyMBac/deep_learning/tensorflow_augmentations.py -> build/lib/SyMBac/deep_learning 2026-03-05T03:52:01,724 copying SyMBac/deep_learning/model_blocks.py -> build/lib/SyMBac/deep_learning 2026-03-05T03:52:01,726 copying SyMBac/deep_learning/loss.py -> build/lib/SyMBac/deep_learning 2026-03-05T03:52:01,728 copying SyMBac/deep_learning/__init__.py -> build/lib/SyMBac/deep_learning 2026-03-05T03:52:01,730 creating build/lib/SyMBac/sample_images 2026-03-05T03:52:01,731 copying SyMBac/sample_images/__init__.py -> build/lib/SyMBac/sample_images 2026-03-05T03:52:01,733 creating build/lib/SyMBac/external/DeLTA 2026-03-05T03:52:01,734 copying SyMBac/external/DeLTA/train_track.py -> build/lib/SyMBac/external/DeLTA 2026-03-05T03:52:01,736 copying SyMBac/external/DeLTA/data.py -> build/lib/SyMBac/external/DeLTA 2026-03-05T03:52:01,738 copying SyMBac/external/DeLTA/bioformats2sequence.py -> build/lib/SyMBac/external/DeLTA 2026-03-05T03:52:01,740 copying SyMBac/external/DeLTA/segmentation_chambers.py -> build/lib/SyMBac/external/DeLTA 2026-03-05T03:52:01,742 copying SyMBac/external/DeLTA/config.py -> build/lib/SyMBac/external/DeLTA 2026-03-05T03:52:01,744 copying SyMBac/external/DeLTA/pipeline.py -> build/lib/SyMBac/external/DeLTA 2026-03-05T03:52:01,746 copying SyMBac/external/DeLTA/tracking.py -> build/lib/SyMBac/external/DeLTA 2026-03-05T03:52:01,748 copying SyMBac/external/DeLTA/__init__.py -> build/lib/SyMBac/external/DeLTA 2026-03-05T03:52:01,750 copying SyMBac/external/DeLTA/segmentation.py -> build/lib/SyMBac/external/DeLTA 2026-03-05T03:52:01,752 copying SyMBac/external/DeLTA/train_seg_chambers.py -> build/lib/SyMBac/external/DeLTA 2026-03-05T03:52:01,753 copying SyMBac/external/DeLTA/utilities.py -> build/lib/SyMBac/external/DeLTA 2026-03-05T03:52:01,757 copying SyMBac/external/DeLTA/train_seg.py -> build/lib/SyMBac/external/DeLTA 2026-03-05T03:52:01,759 copying SyMBac/external/DeLTA/model.py -> build/lib/SyMBac/external/DeLTA 2026-03-05T03:52:01,761 running egg_info 2026-03-05T03:52:01,770 writing SyMBac.egg-info/PKG-INFO 2026-03-05T03:52:01,775 writing dependency_links to SyMBac.egg-info/dependency_links.txt 2026-03-05T03:52:01,777 writing requirements to SyMBac.egg-info/requires.txt 2026-03-05T03:52:01,778 writing top-level names to SyMBac.egg-info/top_level.txt 2026-03-05T03:52:01,794 reading manifest file 'SyMBac.egg-info/SOURCES.txt' 2026-03-05T03:52:01,799 adding license file 'LICENSE' 2026-03-05T03:52:01,804 writing manifest file 'SyMBac.egg-info/SOURCES.txt' 2026-03-05T03:52:01,810 copying SyMBac/sample_images/sample_100x.tiff -> build/lib/SyMBac/sample_images 2026-03-05T03:52:01,813 copying SyMBac/sample_images/sample_100x_stationary.tiff -> build/lib/SyMBac/sample_images 2026-03-05T03:52:01,815 copying SyMBac/sample_images/sample_DeLTA.tiff -> build/lib/SyMBac/sample_images 2026-03-05T03:52:01,831 installing to build/bdist.linux-armv7l/wheel 2026-03-05T03:52:01,832 running install 2026-03-05T03:52:01,856 running install_lib 2026-03-05T03:52:01,861 creating build/bdist.linux-armv7l/wheel 2026-03-05T03:52:01,863 creating build/bdist.linux-armv7l/wheel/SyMBac 2026-03-05T03:52:01,864 copying build/lib/SyMBac/cell_simulation.py -> build/bdist.linux-armv7l/wheel/./SyMBac 2026-03-05T03:52:01,866 copying build/lib/SyMBac/PSF.py -> build/bdist.linux-armv7l/wheel/./SyMBac 2026-03-05T03:52:01,868 copying build/lib/SyMBac/pySHINE.py -> build/bdist.linux-armv7l/wheel/./SyMBac 2026-03-05T03:52:01,871 copying build/lib/SyMBac/simulation.py -> build/bdist.linux-armv7l/wheel/./SyMBac 2026-03-05T03:52:01,873 copying build/lib/SyMBac/trench_geometry.py -> build/bdist.linux-armv7l/wheel/./SyMBac 2026-03-05T03:52:01,876 creating build/bdist.linux-armv7l/wheel/SyMBac/physics 2026-03-05T03:52:01,877 copying build/lib/SyMBac/physics/microfluidic_geometry.py -> build/bdist.linux-armv7l/wheel/./SyMBac/physics 2026-03-05T03:52:01,879 copying build/lib/SyMBac/physics/physics_representation.py -> build/bdist.linux-armv7l/wheel/./SyMBac/physics 2026-03-05T03:52:01,882 copying build/lib/SyMBac/physics/joints.py -> build/bdist.linux-armv7l/wheel/./SyMBac/physics 2026-03-05T03:52:01,883 copying build/lib/SyMBac/physics/config.py -> build/bdist.linux-armv7l/wheel/./SyMBac/physics 2026-03-05T03:52:01,886 copying build/lib/SyMBac/physics/division_manager.py -> build/bdist.linux-armv7l/wheel/./SyMBac/physics 2026-03-05T03:52:01,888 copying build/lib/SyMBac/physics/simulator.py -> build/bdist.linux-armv7l/wheel/./SyMBac/physics 2026-03-05T03:52:01,890 copying build/lib/SyMBac/physics/__init__.py -> build/bdist.linux-armv7l/wheel/./SyMBac/physics 2026-03-05T03:52:01,892 copying build/lib/SyMBac/physics/colony.py -> build/bdist.linux-armv7l/wheel/./SyMBac/physics 2026-03-05T03:52:01,894 copying build/lib/SyMBac/physics/growth_manager.py -> build/bdist.linux-armv7l/wheel/./SyMBac/physics 2026-03-05T03:52:01,896 copying build/lib/SyMBac/physics/simcell.py -> build/bdist.linux-armv7l/wheel/./SyMBac/physics 2026-03-05T03:52:01,898 copying build/lib/SyMBac/physics/segments.py -> build/bdist.linux-armv7l/wheel/./SyMBac/physics 2026-03-05T03:52:01,900 copying build/lib/SyMBac/cell_snapshot.py -> build/bdist.linux-armv7l/wheel/./SyMBac 2026-03-05T03:52:01,902 copying build/lib/SyMBac/renderer.py -> build/bdist.linux-armv7l/wheel/./SyMBac 2026-03-05T03:52:01,905 creating build/bdist.linux-armv7l/wheel/SyMBac/external 2026-03-05T03:52:01,906 copying build/lib/SyMBac/external/__init__.py -> build/bdist.linux-armv7l/wheel/./SyMBac/external 2026-03-05T03:52:01,908 creating build/bdist.linux-armv7l/wheel/SyMBac/external/DeLTA 2026-03-05T03:52:01,909 copying build/lib/SyMBac/external/DeLTA/train_track.py -> build/bdist.linux-armv7l/wheel/./SyMBac/external/DeLTA 2026-03-05T03:52:01,911 copying build/lib/SyMBac/external/DeLTA/data.py -> build/bdist.linux-armv7l/wheel/./SyMBac/external/DeLTA 2026-03-05T03:52:01,914 copying build/lib/SyMBac/external/DeLTA/bioformats2sequence.py -> build/bdist.linux-armv7l/wheel/./SyMBac/external/DeLTA 2026-03-05T03:52:01,916 copying build/lib/SyMBac/external/DeLTA/segmentation_chambers.py -> build/bdist.linux-armv7l/wheel/./SyMBac/external/DeLTA 2026-03-05T03:52:01,918 copying build/lib/SyMBac/external/DeLTA/config.py -> build/bdist.linux-armv7l/wheel/./SyMBac/external/DeLTA 2026-03-05T03:52:01,920 copying build/lib/SyMBac/external/DeLTA/pipeline.py -> build/bdist.linux-armv7l/wheel/./SyMBac/external/DeLTA 2026-03-05T03:52:01,922 copying build/lib/SyMBac/external/DeLTA/tracking.py -> build/bdist.linux-armv7l/wheel/./SyMBac/external/DeLTA 2026-03-05T03:52:01,924 copying build/lib/SyMBac/external/DeLTA/__init__.py -> build/bdist.linux-armv7l/wheel/./SyMBac/external/DeLTA 2026-03-05T03:52:01,925 copying build/lib/SyMBac/external/DeLTA/segmentation.py -> build/bdist.linux-armv7l/wheel/./SyMBac/external/DeLTA 2026-03-05T03:52:01,927 copying build/lib/SyMBac/external/DeLTA/train_seg_chambers.py -> build/bdist.linux-armv7l/wheel/./SyMBac/external/DeLTA 2026-03-05T03:52:01,929 copying build/lib/SyMBac/external/DeLTA/utilities.py -> build/bdist.linux-armv7l/wheel/./SyMBac/external/DeLTA 2026-03-05T03:52:01,932 copying build/lib/SyMBac/external/DeLTA/train_seg.py -> build/bdist.linux-armv7l/wheel/./SyMBac/external/DeLTA 2026-03-05T03:52:01,933 copying build/lib/SyMBac/external/DeLTA/model.py -> build/bdist.linux-armv7l/wheel/./SyMBac/external/DeLTA 2026-03-05T03:52:01,936 copying build/lib/SyMBac/colony_renderer.py -> build/bdist.linux-armv7l/wheel/./SyMBac 2026-03-05T03:52:01,938 copying build/lib/SyMBac/auto_optimise.py -> build/bdist.linux-armv7l/wheel/./SyMBac 2026-03-05T03:52:01,941 copying build/lib/SyMBac/cell.py -> build/bdist.linux-armv7l/wheel/./SyMBac 2026-03-05T03:52:01,943 copying build/lib/SyMBac/__init__.py -> build/bdist.linux-armv7l/wheel/./SyMBac 2026-03-05T03:52:01,945 copying build/lib/SyMBac/metrics.py -> build/bdist.linux-armv7l/wheel/./SyMBac 2026-03-05T03:52:01,947 copying build/lib/SyMBac/_deprecation.py -> build/bdist.linux-armv7l/wheel/./SyMBac 2026-03-05T03:52:01,948 copying build/lib/SyMBac/drawing.py -> build/bdist.linux-armv7l/wheel/./SyMBac 2026-03-05T03:52:01,951 copying build/lib/SyMBac/misc.py -> build/bdist.linux-armv7l/wheel/./SyMBac 2026-03-05T03:52:01,953 creating build/bdist.linux-armv7l/wheel/SyMBac/deep_learning 2026-03-05T03:52:01,954 copying build/lib/SyMBac/deep_learning/tensorflow_augmentations.py -> build/bdist.linux-armv7l/wheel/./SyMBac/deep_learning 2026-03-05T03:52:01,957 copying build/lib/SyMBac/deep_learning/model_blocks.py -> build/bdist.linux-armv7l/wheel/./SyMBac/deep_learning 2026-03-05T03:52:01,959 copying build/lib/SyMBac/deep_learning/loss.py -> build/bdist.linux-armv7l/wheel/./SyMBac/deep_learning 2026-03-05T03:52:01,960 copying build/lib/SyMBac/deep_learning/__init__.py -> build/bdist.linux-armv7l/wheel/./SyMBac/deep_learning 2026-03-05T03:52:01,962 creating build/bdist.linux-armv7l/wheel/SyMBac/sample_images 2026-03-05T03:52:01,963 copying build/lib/SyMBac/sample_images/sample_100x.tiff -> build/bdist.linux-armv7l/wheel/./SyMBac/sample_images 2026-03-05T03:52:01,966 copying build/lib/SyMBac/sample_images/sample_100x_stationary.tiff -> build/bdist.linux-armv7l/wheel/./SyMBac/sample_images 2026-03-05T03:52:01,968 copying build/lib/SyMBac/sample_images/sample_DeLTA.tiff -> build/bdist.linux-armv7l/wheel/./SyMBac/sample_images 2026-03-05T03:52:01,971 copying build/lib/SyMBac/sample_images/__init__.py -> build/bdist.linux-armv7l/wheel/./SyMBac/sample_images 2026-03-05T03:52:01,973 copying build/lib/SyMBac/cell_geometry.py -> build/bdist.linux-armv7l/wheel/./SyMBac 2026-03-05T03:52:01,975 copying build/lib/SyMBac/colony_simulation.py -> build/bdist.linux-armv7l/wheel/./SyMBac 2026-03-05T03:52:01,977 copying build/lib/SyMBac/lineage.py -> build/bdist.linux-armv7l/wheel/./SyMBac 2026-03-05T03:52:01,979 running install_egg_info 2026-03-05T03:52:01,984 Copying SyMBac.egg-info to build/bdist.linux-armv7l/wheel/./SyMBac-0.5.0-py3.11.egg-info 2026-03-05T03:52:01,993 running install_scripts 2026-03-05T03:52:02,003 creating build/bdist.linux-armv7l/wheel/symbac-0.5.0.dist-info/WHEEL 2026-03-05T03:52:02,006 creating '/tmp/pip-wheel-wzt32svc/.tmp-8k2fryw5/symbac-0.5.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-03-05T03:52:02,009 adding 'SyMBac/PSF.py' 2026-03-05T03:52:02,010 adding 'SyMBac/__init__.py' 2026-03-05T03:52:02,011 adding 'SyMBac/_deprecation.py' 2026-03-05T03:52:02,015 adding 'SyMBac/auto_optimise.py' 2026-03-05T03:52:02,017 adding 'SyMBac/cell.py' 2026-03-05T03:52:02,018 adding 'SyMBac/cell_geometry.py' 2026-03-05T03:52:02,021 adding 'SyMBac/cell_simulation.py' 2026-03-05T03:52:02,022 adding 'SyMBac/cell_snapshot.py' 2026-03-05T03:52:02,024 adding 'SyMBac/colony_renderer.py' 2026-03-05T03:52:02,026 adding 'SyMBac/colony_simulation.py' 2026-03-05T03:52:02,029 adding 'SyMBac/drawing.py' 2026-03-05T03:52:02,030 adding 'SyMBac/lineage.py' 2026-03-05T03:52:02,032 adding 'SyMBac/metrics.py' 2026-03-05T03:52:02,033 adding 'SyMBac/misc.py' 2026-03-05T03:52:02,035 adding 'SyMBac/pySHINE.py' 2026-03-05T03:52:02,042 adding 'SyMBac/renderer.py' 2026-03-05T03:52:02,045 adding 'SyMBac/simulation.py' 2026-03-05T03:52:02,046 adding 'SyMBac/trench_geometry.py' 2026-03-05T03:52:02,048 adding 'SyMBac/deep_learning/__init__.py' 2026-03-05T03:52:02,049 adding 'SyMBac/deep_learning/loss.py' 2026-03-05T03:52:02,050 adding 'SyMBac/deep_learning/model_blocks.py' 2026-03-05T03:52:02,052 adding 'SyMBac/deep_learning/tensorflow_augmentations.py' 2026-03-05T03:52:02,053 adding 'SyMBac/external/__init__.py' 2026-03-05T03:52:02,055 adding 'SyMBac/external/DeLTA/__init__.py' 2026-03-05T03:52:02,057 adding 'SyMBac/external/DeLTA/bioformats2sequence.py' 2026-03-05T03:52:02,058 adding 'SyMBac/external/DeLTA/config.py' 2026-03-05T03:52:02,062 adding 'SyMBac/external/DeLTA/data.py' 2026-03-05T03:52:02,063 adding 'SyMBac/external/DeLTA/model.py' 2026-03-05T03:52:02,066 adding 'SyMBac/external/DeLTA/pipeline.py' 2026-03-05T03:52:02,068 adding 'SyMBac/external/DeLTA/segmentation.py' 2026-03-05T03:52:02,070 adding 'SyMBac/external/DeLTA/segmentation_chambers.py' 2026-03-05T03:52:02,071 adding 'SyMBac/external/DeLTA/tracking.py' 2026-03-05T03:52:02,072 adding 'SyMBac/external/DeLTA/train_seg.py' 2026-03-05T03:52:02,074 adding 'SyMBac/external/DeLTA/train_seg_chambers.py' 2026-03-05T03:52:02,075 adding 'SyMBac/external/DeLTA/train_track.py' 2026-03-05T03:52:02,081 adding 'SyMBac/external/DeLTA/utilities.py' 2026-03-05T03:52:02,084 adding 'SyMBac/physics/__init__.py' 2026-03-05T03:52:02,085 adding 'SyMBac/physics/colony.py' 2026-03-05T03:52:02,087 adding 'SyMBac/physics/config.py' 2026-03-05T03:52:02,089 adding 'SyMBac/physics/division_manager.py' 2026-03-05T03:52:02,091 adding 'SyMBac/physics/growth_manager.py' 2026-03-05T03:52:02,092 adding 'SyMBac/physics/joints.py' 2026-03-05T03:52:02,094 adding 'SyMBac/physics/microfluidic_geometry.py' 2026-03-05T03:52:02,096 adding 'SyMBac/physics/physics_representation.py' 2026-03-05T03:52:02,098 adding 'SyMBac/physics/segments.py' 2026-03-05T03:52:02,099 adding 'SyMBac/physics/simcell.py' 2026-03-05T03:52:02,101 adding 'SyMBac/physics/simulator.py' 2026-03-05T03:52:02,103 adding 'SyMBac/sample_images/__init__.py' 2026-03-05T03:52:02,107 adding 'SyMBac/sample_images/sample_100x.tiff' 2026-03-05T03:52:02,111 adding 'SyMBac/sample_images/sample_100x_stationary.tiff' 2026-03-05T03:52:02,116 adding 'SyMBac/sample_images/sample_DeLTA.tiff' 2026-03-05T03:52:02,121 adding 'symbac-0.5.0.dist-info/licenses/LICENSE' 2026-03-05T03:52:02,124 adding 'symbac-0.5.0.dist-info/METADATA' 2026-03-05T03:52:02,126 adding 'symbac-0.5.0.dist-info/WHEEL' 2026-03-05T03:52:02,127 adding 'symbac-0.5.0.dist-info/top_level.txt' 2026-03-05T03:52:02,128 adding 'symbac-0.5.0.dist-info/RECORD' 2026-03-05T03:52:02,134 removing build/bdist.linux-armv7l/wheel 2026-03-05T03:52:02,251 Building wheel for symbac (pyproject.toml): finished with status 'done' 2026-03-05T03:52:02,261 Created wheel for symbac: filename=symbac-0.5.0-py3-none-any.whl size=212799 sha256=f07020a7cf1a7b81405297683555f605a1c9580df6a53e5648e4448527b4009d 2026-03-05T03:52:02,263 Stored in directory: /tmp/pip-ephem-wheel-cache-k_gmacd5/wheels/5d/13/d1/58cb2dff821d50e6a9404c7dbf229a60351aa8c67064135380 2026-03-05T03:52:02,276 Successfully built symbac 2026-03-05T03:52:02,291 Removed build tracker: '/tmp/pip-build-tracker-d0f4_y4p'