2026-03-05T06:46:26,287 Created temporary directory: /tmp/pip-ephem-wheel-cache-ndt__bxl 2026-03-05T06:46:26,289 Created temporary directory: /tmp/pip-build-tracker-0burljbm 2026-03-05T06:46:26,289 Initialized build tracking at /tmp/pip-build-tracker-0burljbm 2026-03-05T06:46:26,290 Created build tracker: /tmp/pip-build-tracker-0burljbm 2026-03-05T06:46:26,290 Entered build tracker: /tmp/pip-build-tracker-0burljbm 2026-03-05T06:46:26,291 Created temporary directory: /tmp/pip-wheel-wad3p_zk 2026-03-05T06:46:26,294 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-05T06:46:26,296 Created temporary directory: /tmp/pip-ephem-wheel-cache-7zcs5w73 2026-03-05T06:46:26,318 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-05T06:46:26,322 2 location(s) to search for versions of symbac: 2026-03-05T06:46:26,322 * https://pypi.org/simple/symbac/ 2026-03-05T06:46:26,322 * https://www.piwheels.org/simple/symbac/ 2026-03-05T06:46:26,323 Fetching project page and analyzing links: https://pypi.org/simple/symbac/ 2026-03-05T06:46:26,323 Getting page https://pypi.org/simple/symbac/ 2026-03-05T06:46:26,325 Found index url https://pypi.org/simple 2026-03-05T06:46:26,463 Fetched page https://pypi.org/simple/symbac/ as application/vnd.pypi.simple.v1+json 2026-03-05T06:46:26,468 Found link https://files.pythonhosted.org/packages/ed/dd/b576cd6f2c99801d3fa3b106fe81dd8435f0379ba6752dcdb4a9bef2a052/SyMBac-0.1.0.tar.gz (from https://pypi.org/simple/symbac/), version: 0.1.0 2026-03-05T06:46:26,469 Found link https://files.pythonhosted.org/packages/5c/9a/0711b93410576410a0038fe2a9fd277d1684f4635990c786edeb14ea1742/SyMBac-0.1.2.tar.gz (from https://pypi.org/simple/symbac/), version: 0.1.2 2026-03-05T06:46:26,469 Found link https://files.pythonhosted.org/packages/54/53/4841d1f1430b3d1c92d29477a8b6004d677da252db20e85c8948b42b3616/SyMBac-0.1.3.tar.gz (from https://pypi.org/simple/symbac/), version: 0.1.3 2026-03-05T06:46:26,470 Found link https://files.pythonhosted.org/packages/31/89/f1b1f95a6e9500c76926046f44d1ff23760b1512b4b87f22645620627ee2/SyMBac-0.1.4.tar.gz (from https://pypi.org/simple/symbac/), version: 0.1.4 2026-03-05T06:46:26,471 Found link https://files.pythonhosted.org/packages/49/a8/8011f4be0ab8ccec726988fcbe200462d10329894037208db1293b3bf4b5/SyMBac-0.1.5.tar.gz (from https://pypi.org/simple/symbac/), version: 0.1.5 2026-03-05T06:46:26,472 Found link https://files.pythonhosted.org/packages/b0/0c/0b59c25952bf7e19bcd157d74814c0009f5876d51e0c0f473e4d226bf636/SyMBac-0.1.6.tar.gz (from https://pypi.org/simple/symbac/), version: 0.1.6 2026-03-05T06:46:26,472 Found link https://files.pythonhosted.org/packages/77/5a/20d69aeeec53a2bf716275a084e3a9e6dd38cec13ce54132ceaa0895ce8d/SyMBac-0.1.8.tar.gz (from https://pypi.org/simple/symbac/), version: 0.1.8 2026-03-05T06:46:26,473 Found link https://files.pythonhosted.org/packages/d6/1c/452fb5556bd679036ab50da899ffb76c79ec2608f89f70530a66fb691407/SyMBac-0.1.9.tar.gz (from https://pypi.org/simple/symbac/), version: 0.1.9 2026-03-05T06:46:26,474 Found link https://files.pythonhosted.org/packages/56/05/0aa737090207a5ffd05c5a67757570a2dc3666a7aa47dec0d229ea4ed93c/SyMBac-0.1.10.tar.gz (from https://pypi.org/simple/symbac/), version: 0.1.10 2026-03-05T06:46:26,474 Found link https://files.pythonhosted.org/packages/35/c9/0b158ee65ab06486d6490484e82c55bc0e884711d8e7a805591c798e99c7/SyMBac-0.2.0.tar.gz (from https://pypi.org/simple/symbac/), version: 0.2.0 2026-03-05T06:46:26,475 Skipping link: No binaries permitted for symbac: https://files.pythonhosted.org/packages/9f/74/998bf98b305bc9bd9c2cdc9014bd5925b2f071050e3f98ffd2ae8f5ace33/SyMBac-0.3.0-py3-none-any.whl (from https://pypi.org/simple/symbac/) 2026-03-05T06:46:26,476 Found link https://files.pythonhosted.org/packages/34/cd/c836dd51ea484cfc79c4120cfbff2df25a81841d01eca9aceaa601c29703/SyMBac-0.3.0.tar.gz (from https://pypi.org/simple/symbac/), version: 0.3.0 2026-03-05T06:46:26,477 Skipping link: No binaries permitted for symbac: https://files.pythonhosted.org/packages/6f/43/8e15dec40cc95179247006897d8388f2848159751b1a6888c5314aeaf9bf/SyMBac-0.3.1-py3-none-any.whl (from https://pypi.org/simple/symbac/) 2026-03-05T06:46:26,477 Found link https://files.pythonhosted.org/packages/07/f4/f598ad8aaac1f09d3c7f22c39d1a13b7631f84bc86cabbb6283ada7be8f9/SyMBac-0.3.1.tar.gz (from https://pypi.org/simple/symbac/), version: 0.3.1 2026-03-05T06:46:26,478 Skipping link: No binaries permitted for symbac: https://files.pythonhosted.org/packages/94/02/e5039f315ddd31f97fb55b164ed464fe00d51ac0dd8b2bf4404e3ee9227c/SyMBac-0.4.0-py3-none-any.whl (from https://pypi.org/simple/symbac/) 2026-03-05T06:46:26,478 Skipping link: No binaries permitted for symbac: https://files.pythonhosted.org/packages/05/6f/ad6d77721bd0e4b5925797346c76752439580211901317029df912c20e72/symbac-0.5.0-py3-none-any.whl (from https://pypi.org/simple/symbac/) (requires-python:>=3.9) 2026-03-05T06:46:26,479 Found link https://files.pythonhosted.org/packages/94/d1/01bff29abd84411138f73da849342808a9e236b0f852c9306b006c14f6eb/symbac-0.5.0.tar.gz (from https://pypi.org/simple/symbac/) (requires-python:>=3.9), version: 0.5.0 2026-03-05T06:46:26,480 Skipping link: No binaries permitted for symbac: https://files.pythonhosted.org/packages/1b/d8/bc1b5300e8c1153f1723818f9816e210ea9060c438d8a6294fdccf379e2e/symbac-0.5.1-py3-none-any.whl (from https://pypi.org/simple/symbac/) (requires-python:>=3.9) 2026-03-05T06:46:26,481 Found link https://files.pythonhosted.org/packages/0c/31/5df2e10e6324626508d56c9bc17b77ee2b11486b09ff2050f8778bfcdd94/symbac-0.5.1.tar.gz (from https://pypi.org/simple/symbac/) (requires-python:>=3.9), version: 0.5.1 2026-03-05T06:46:26,481 Skipping link: No binaries permitted for symbac: https://files.pythonhosted.org/packages/74/8f/1d2c163ab4e7c9fb1032256124813081356aad67889694253e513741f63c/symbac-0.5.2-py3-none-any.whl (from https://pypi.org/simple/symbac/) (requires-python:>=3.9) 2026-03-05T06:46:26,482 Found link https://files.pythonhosted.org/packages/c1/48/df82b3f3c4bc187147eba79c83392d3c79a40efd54ba81f6e8d8b9ea8c35/symbac-0.5.2.tar.gz (from https://pypi.org/simple/symbac/) (requires-python:>=3.9), version: 0.5.2 2026-03-05T06:46:26,483 Fetching project page and analyzing links: https://www.piwheels.org/simple/symbac/ 2026-03-05T06:46:26,484 Getting page https://www.piwheels.org/simple/symbac/ 2026-03-05T06:46:26,485 Found index url https://www.piwheels.org/simple 2026-03-05T06:46:26,646 Fetched page https://www.piwheels.org/simple/symbac/ as text/html 2026-03-05T06:46:26,650 Skipping link: No binaries permitted for symbac: https://www.piwheels.org/simple/symbac/symbac-0.5.0-py3-none-any.whl#sha256=f07020a7cf1a7b81405297683555f605a1c9580df6a53e5648e4448527b4009d (from https://www.piwheels.org/simple/symbac/) (requires-python:>=3.9) 2026-03-05T06:46:26,651 Skipping link: No binaries permitted for symbac: https://archive1.piwheels.org/simple/symbac/SyMBac-0.3.1-py3-none-any.whl#sha256=19276525fe41697178ee31ce68b95d317d5db474fc17214f02e1c6975fa2814a (from https://www.piwheels.org/simple/symbac/) 2026-03-05T06:46:26,652 Skipping link: No binaries permitted for symbac: https://archive1.piwheels.org/simple/symbac/SyMBac-0.3.0-py3-none-any.whl#sha256=58c7485f4d67c4598368ef3b026e7b795e13f6bdd9779790ab56244a5177165c (from https://www.piwheels.org/simple/symbac/) 2026-03-05T06:46:26,652 Skipping link: No binaries permitted for symbac: https://archive1.piwheels.org/simple/symbac/SyMBac-0.2.0-py3-none-any.whl#sha256=7601c6e9bc0e886acd67b9214cea27567e81cb4e838d87c39f8b12665d6ccd40 (from https://www.piwheels.org/simple/symbac/) 2026-03-05T06:46:26,653 Skipping link: No binaries permitted for symbac: https://archive1.piwheels.org/simple/symbac/SyMBac-0.1.10-py3-none-any.whl#sha256=825099cef2ae3ab888dcf946c8f8a20a0e3046a96f0e3e50d39f63e520b4415e (from https://www.piwheels.org/simple/symbac/) 2026-03-05T06:46:26,653 Skipping link: No binaries permitted for symbac: https://archive1.piwheels.org/simple/symbac/SyMBac-0.1.9-py3-none-any.whl#sha256=16af52ee8ae2b81cdc26bd022400026b98dc2351444d322360a7ece41a43cf19 (from https://www.piwheels.org/simple/symbac/) 2026-03-05T06:46:26,654 Skipping link: No binaries permitted for symbac: https://archive1.piwheels.org/simple/symbac/SyMBac-0.1.8-py3-none-any.whl#sha256=702ce3f20913ed66b12089ce78a7e0c7355e41652dc54693987269121cbe93ce (from https://www.piwheels.org/simple/symbac/) 2026-03-05T06:46:26,655 Skipping link: No binaries permitted for symbac: https://archive1.piwheels.org/simple/symbac/SyMBac-0.1.6-py3-none-any.whl#sha256=6407316b6941da22527d98ca29e4d43ebd5afdd33e42b18c95ba044f9a0060e7 (from https://www.piwheels.org/simple/symbac/) 2026-03-05T06:46:26,655 Skipping link: No binaries permitted for symbac: https://archive1.piwheels.org/simple/symbac/SyMBac-0.1.5-py3-none-any.whl#sha256=6d3211592ee08162914b4659ff8ef58779ba29c56494cdb53829ddef46f112ef (from https://www.piwheels.org/simple/symbac/) 2026-03-05T06:46:26,656 Skipping link: No binaries permitted for symbac: https://archive1.piwheels.org/simple/symbac/SyMBac-0.1.4-py3-none-any.whl#sha256=06b114e2d6fe6ddf9af868bdfcbabd5e98398a70e4ea2bb780a6d756d8b38488 (from https://www.piwheels.org/simple/symbac/) 2026-03-05T06:46:26,656 Skipping link: No binaries permitted for symbac: https://archive1.piwheels.org/simple/symbac/SyMBac-0.1.3-py3-none-any.whl#sha256=a8d211d6a06ee57e25dc9a2dadda07ef4f40359d80cbbc67c776cbe1f848cb53 (from https://www.piwheels.org/simple/symbac/) 2026-03-05T06:46:26,657 Skipping link: No binaries permitted for symbac: https://archive1.piwheels.org/simple/symbac/SyMBac-0.1.2-py3-none-any.whl#sha256=dcdb4715506bd878560597bf4a9ac87730be567a4102cf484101fad7bf31fd57 (from https://www.piwheels.org/simple/symbac/) 2026-03-05T06:46:26,657 Skipping link: No binaries permitted for symbac: https://archive1.piwheels.org/simple/symbac/SyMBac-0.1.0-py3-none-any.whl#sha256=8737c80a6cb3eddcd955a1bf4f5c7ee243dbb1974bc5002d167081bd69e7c482 (from https://www.piwheels.org/simple/symbac/) 2026-03-05T06:46:26,658 Skipping link: not a file: https://www.piwheels.org/simple/symbac/ 2026-03-05T06:46:26,658 Skipping link: not a file: https://pypi.org/simple/symbac/ 2026-03-05T06:46:26,679 Given no hashes to check 1 links for project 'symbac': discarding no candidates 2026-03-05T06:46:26,698 Collecting symbac==0.5.1 2026-03-05T06:46:26,700 Created temporary directory: /tmp/pip-unpack-zsc1gp8b 2026-03-05T06:46:26,911 Downloading symbac-0.5.1.tar.gz (206 kB) 2026-03-05T06:46:27,209 Added symbac==0.5.1 from https://files.pythonhosted.org/packages/0c/31/5df2e10e6324626508d56c9bc17b77ee2b11486b09ff2050f8778bfcdd94/symbac-0.5.1.tar.gz to build tracker '/tmp/pip-build-tracker-0burljbm' 2026-03-05T06:46:27,214 Created temporary directory: /tmp/pip-build-env-cl9njwl4 2026-03-05T06:46:27,218 Installing build dependencies: started 2026-03-05T06:46:27,220 Running command pip subprocess to install build dependencies 2026-03-05T06:46:28,376 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-03-05T06:46:28,983 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-05T06:46:29,006 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-05T06:46:30,752 Collecting setuptools>=64 2026-03-05T06:46:30,830 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.0-py3-none-any.whl (1.0 MB) 2026-03-05T06:46:33,769 Installing collected packages: setuptools 2026-03-05T06:46:36,851 Successfully installed setuptools-82.0.0 2026-03-05T06:46:37,139 Installing build dependencies: finished with status 'done' 2026-03-05T06:46:37,145 Getting requirements to build wheel: started 2026-03-05T06:46:37,147 Running command Getting requirements to build wheel 2026-03-05T06:46:37,862 running egg_info 2026-03-05T06:46:37,867 writing SyMBac.egg-info/PKG-INFO 2026-03-05T06:46:37,873 writing dependency_links to SyMBac.egg-info/dependency_links.txt 2026-03-05T06:46:37,877 writing requirements to SyMBac.egg-info/requires.txt 2026-03-05T06:46:37,878 writing top-level names to SyMBac.egg-info/top_level.txt 2026-03-05T06:46:37,905 reading manifest file 'SyMBac.egg-info/SOURCES.txt' 2026-03-05T06:46:37,910 adding license file 'LICENSE' 2026-03-05T06:46:37,915 writing manifest file 'SyMBac.egg-info/SOURCES.txt' 2026-03-05T06:46:38,012 Getting requirements to build wheel: finished with status 'done' 2026-03-05T06:46:38,015 Created temporary directory: /tmp/pip-modern-metadata-y3uhz89j 2026-03-05T06:46:38,017 Preparing metadata (pyproject.toml): started 2026-03-05T06:46:38,019 Running command Preparing metadata (pyproject.toml) 2026-03-05T06:46:38,697 running dist_info 2026-03-05T06:46:38,707 creating /tmp/pip-modern-metadata-y3uhz89j/SyMBac.egg-info 2026-03-05T06:46:38,708 writing /tmp/pip-modern-metadata-y3uhz89j/SyMBac.egg-info/PKG-INFO 2026-03-05T06:46:38,714 writing dependency_links to /tmp/pip-modern-metadata-y3uhz89j/SyMBac.egg-info/dependency_links.txt 2026-03-05T06:46:38,717 writing requirements to /tmp/pip-modern-metadata-y3uhz89j/SyMBac.egg-info/requires.txt 2026-03-05T06:46:38,718 writing top-level names to /tmp/pip-modern-metadata-y3uhz89j/SyMBac.egg-info/top_level.txt 2026-03-05T06:46:38,720 writing manifest file '/tmp/pip-modern-metadata-y3uhz89j/SyMBac.egg-info/SOURCES.txt' 2026-03-05T06:46:38,744 reading manifest file '/tmp/pip-modern-metadata-y3uhz89j/SyMBac.egg-info/SOURCES.txt' 2026-03-05T06:46:38,746 adding license file 'LICENSE' 2026-03-05T06:46:38,750 writing manifest file '/tmp/pip-modern-metadata-y3uhz89j/SyMBac.egg-info/SOURCES.txt' 2026-03-05T06:46:38,751 creating '/tmp/pip-modern-metadata-y3uhz89j/symbac-0.5.1.dist-info' 2026-03-05T06:46:38,874 Preparing metadata (pyproject.toml): finished with status 'done' 2026-03-05T06:46:38,879 Source in /tmp/pip-wheel-wad3p_zk/symbac_52eaa48c29b44fec869bd2add13c8b67 has version 0.5.1, which satisfies requirement symbac==0.5.1 from https://files.pythonhosted.org/packages/0c/31/5df2e10e6324626508d56c9bc17b77ee2b11486b09ff2050f8778bfcdd94/symbac-0.5.1.tar.gz 2026-03-05T06:46:38,880 Removed symbac==0.5.1 from https://files.pythonhosted.org/packages/0c/31/5df2e10e6324626508d56c9bc17b77ee2b11486b09ff2050f8778bfcdd94/symbac-0.5.1.tar.gz from build tracker '/tmp/pip-build-tracker-0burljbm' 2026-03-05T06:46:38,887 Created temporary directory: /tmp/pip-unpack-aqdajdro 2026-03-05T06:46:38,887 Building wheels for collected packages: symbac 2026-03-05T06:46:38,892 Created temporary directory: /tmp/pip-wheel-xysclbac 2026-03-05T06:46:38,892 Destination directory: /tmp/pip-wheel-xysclbac 2026-03-05T06:46:38,895 Building wheel for symbac (pyproject.toml): started 2026-03-05T06:46:38,896 Running command Building wheel for symbac (pyproject.toml) 2026-03-05T06:46:39,529 running bdist_wheel 2026-03-05T06:46:39,547 running build 2026-03-05T06:46:39,547 running build_py 2026-03-05T06:46:39,554 creating build/lib/SyMBac 2026-03-05T06:46:39,556 copying SyMBac/cell_simulation.py -> build/lib/SyMBac 2026-03-05T06:46:39,559 copying SyMBac/cell_snapshot.py -> build/lib/SyMBac 2026-03-05T06:46:39,561 copying SyMBac/PSF.py -> build/lib/SyMBac 2026-03-05T06:46:39,564 copying SyMBac/misc.py -> build/lib/SyMBac 2026-03-05T06:46:39,566 copying SyMBac/colony_renderer.py -> build/lib/SyMBac 2026-03-05T06:46:39,568 copying SyMBac/drawing.py -> build/lib/SyMBac 2026-03-05T06:46:39,571 copying SyMBac/_deprecation.py -> build/lib/SyMBac 2026-03-05T06:46:39,573 copying SyMBac/cell_geometry.py -> build/lib/SyMBac 2026-03-05T06:46:39,575 copying SyMBac/auto_optimise.py -> build/lib/SyMBac 2026-03-05T06:46:39,578 copying SyMBac/simulation.py -> build/lib/SyMBac 2026-03-05T06:46:39,581 copying SyMBac/lineage.py -> build/lib/SyMBac 2026-03-05T06:46:39,583 copying SyMBac/renderer.py -> build/lib/SyMBac 2026-03-05T06:46:39,586 copying SyMBac/pySHINE.py -> build/lib/SyMBac 2026-03-05T06:46:39,588 copying SyMBac/metrics.py -> build/lib/SyMBac 2026-03-05T06:46:39,590 copying SyMBac/colony_simulation.py -> build/lib/SyMBac 2026-03-05T06:46:39,592 copying SyMBac/cell.py -> build/lib/SyMBac 2026-03-05T06:46:39,595 copying SyMBac/__init__.py -> build/lib/SyMBac 2026-03-05T06:46:39,596 copying SyMBac/trench_geometry.py -> build/lib/SyMBac 2026-03-05T06:46:39,599 creating build/lib/SyMBac/deep_learning 2026-03-05T06:46:39,600 copying SyMBac/deep_learning/loss.py -> build/lib/SyMBac/deep_learning 2026-03-05T06:46:39,602 copying SyMBac/deep_learning/model_blocks.py -> build/lib/SyMBac/deep_learning 2026-03-05T06:46:39,604 copying SyMBac/deep_learning/tensorflow_augmentations.py -> build/lib/SyMBac/deep_learning 2026-03-05T06:46:39,606 copying SyMBac/deep_learning/__init__.py -> build/lib/SyMBac/deep_learning 2026-03-05T06:46:39,608 creating build/lib/SyMBac/external 2026-03-05T06:46:39,609 copying SyMBac/external/__init__.py -> build/lib/SyMBac/external 2026-03-05T06:46:39,611 creating build/lib/SyMBac/sample_images 2026-03-05T06:46:39,612 copying SyMBac/sample_images/__init__.py -> build/lib/SyMBac/sample_images 2026-03-05T06:46:39,614 creating build/lib/SyMBac/physics 2026-03-05T06:46:39,615 copying SyMBac/physics/growth_manager.py -> build/lib/SyMBac/physics 2026-03-05T06:46:39,617 copying SyMBac/physics/joints.py -> build/lib/SyMBac/physics 2026-03-05T06:46:39,619 copying SyMBac/physics/simulator.py -> build/lib/SyMBac/physics 2026-03-05T06:46:39,622 copying SyMBac/physics/physics_representation.py -> build/lib/SyMBac/physics 2026-03-05T06:46:39,624 copying SyMBac/physics/colony.py -> build/lib/SyMBac/physics 2026-03-05T06:46:39,627 copying SyMBac/physics/segments.py -> build/lib/SyMBac/physics 2026-03-05T06:46:39,629 copying SyMBac/physics/config.py -> build/lib/SyMBac/physics 2026-03-05T06:46:39,631 copying SyMBac/physics/microfluidic_geometry.py -> build/lib/SyMBac/physics 2026-03-05T06:46:39,633 copying SyMBac/physics/simcell.py -> build/lib/SyMBac/physics 2026-03-05T06:46:39,635 copying SyMBac/physics/__init__.py -> build/lib/SyMBac/physics 2026-03-05T06:46:39,637 copying SyMBac/physics/division_manager.py -> build/lib/SyMBac/physics 2026-03-05T06:46:39,640 creating build/lib/SyMBac/external/DeLTA 2026-03-05T06:46:39,641 copying SyMBac/external/DeLTA/train_seg.py -> build/lib/SyMBac/external/DeLTA 2026-03-05T06:46:39,643 copying SyMBac/external/DeLTA/utilities.py -> build/lib/SyMBac/external/DeLTA 2026-03-05T06:46:39,646 copying SyMBac/external/DeLTA/train_track.py -> build/lib/SyMBac/external/DeLTA 2026-03-05T06:46:39,648 copying SyMBac/external/DeLTA/segmentation.py -> build/lib/SyMBac/external/DeLTA 2026-03-05T06:46:39,650 copying SyMBac/external/DeLTA/tracking.py -> build/lib/SyMBac/external/DeLTA 2026-03-05T06:46:39,652 copying SyMBac/external/DeLTA/config.py -> build/lib/SyMBac/external/DeLTA 2026-03-05T06:46:39,654 copying SyMBac/external/DeLTA/train_seg_chambers.py -> build/lib/SyMBac/external/DeLTA 2026-03-05T06:46:39,656 copying SyMBac/external/DeLTA/segmentation_chambers.py -> build/lib/SyMBac/external/DeLTA 2026-03-05T06:46:39,657 copying SyMBac/external/DeLTA/pipeline.py -> build/lib/SyMBac/external/DeLTA 2026-03-05T06:46:39,660 copying SyMBac/external/DeLTA/model.py -> build/lib/SyMBac/external/DeLTA 2026-03-05T06:46:39,663 copying SyMBac/external/DeLTA/bioformats2sequence.py -> build/lib/SyMBac/external/DeLTA 2026-03-05T06:46:39,665 copying SyMBac/external/DeLTA/__init__.py -> build/lib/SyMBac/external/DeLTA 2026-03-05T06:46:39,667 copying SyMBac/external/DeLTA/data.py -> build/lib/SyMBac/external/DeLTA 2026-03-05T06:46:39,670 running egg_info 2026-03-05T06:46:39,680 writing SyMBac.egg-info/PKG-INFO 2026-03-05T06:46:39,685 writing dependency_links to SyMBac.egg-info/dependency_links.txt 2026-03-05T06:46:39,688 writing requirements to SyMBac.egg-info/requires.txt 2026-03-05T06:46:39,689 writing top-level names to SyMBac.egg-info/top_level.txt 2026-03-05T06:46:39,704 reading manifest file 'SyMBac.egg-info/SOURCES.txt' 2026-03-05T06:46:39,709 adding license file 'LICENSE' 2026-03-05T06:46:39,714 writing manifest file 'SyMBac.egg-info/SOURCES.txt' 2026-03-05T06:46:39,720 copying SyMBac/sample_images/sample_100x.tiff -> build/lib/SyMBac/sample_images 2026-03-05T06:46:39,723 copying SyMBac/sample_images/sample_100x_stationary.tiff -> build/lib/SyMBac/sample_images 2026-03-05T06:46:39,727 copying SyMBac/sample_images/sample_DeLTA.tiff -> build/lib/SyMBac/sample_images 2026-03-05T06:46:39,744 installing to build/bdist.linux-armv7l/wheel 2026-03-05T06:46:39,745 running install 2026-03-05T06:46:39,769 running install_lib 2026-03-05T06:46:39,774 creating build/bdist.linux-armv7l/wheel 2026-03-05T06:46:39,776 creating build/bdist.linux-armv7l/wheel/SyMBac 2026-03-05T06:46:39,778 copying build/lib/SyMBac/cell_simulation.py -> build/bdist.linux-armv7l/wheel/./SyMBac 2026-03-05T06:46:39,780 copying build/lib/SyMBac/cell_snapshot.py -> build/bdist.linux-armv7l/wheel/./SyMBac 2026-03-05T06:46:39,783 copying build/lib/SyMBac/PSF.py -> build/bdist.linux-armv7l/wheel/./SyMBac 2026-03-05T06:46:39,785 copying build/lib/SyMBac/misc.py -> build/bdist.linux-armv7l/wheel/./SyMBac 2026-03-05T06:46:39,788 creating build/bdist.linux-armv7l/wheel/SyMBac/deep_learning 2026-03-05T06:46:39,789 copying build/lib/SyMBac/deep_learning/loss.py -> build/bdist.linux-armv7l/wheel/./SyMBac/deep_learning 2026-03-05T06:46:39,791 copying build/lib/SyMBac/deep_learning/model_blocks.py -> build/bdist.linux-armv7l/wheel/./SyMBac/deep_learning 2026-03-05T06:46:39,793 copying build/lib/SyMBac/deep_learning/tensorflow_augmentations.py -> build/bdist.linux-armv7l/wheel/./SyMBac/deep_learning 2026-03-05T06:46:39,795 copying build/lib/SyMBac/deep_learning/__init__.py -> build/bdist.linux-armv7l/wheel/./SyMBac/deep_learning 2026-03-05T06:46:39,797 copying build/lib/SyMBac/colony_renderer.py -> build/bdist.linux-armv7l/wheel/./SyMBac 2026-03-05T06:46:39,799 copying build/lib/SyMBac/drawing.py -> build/bdist.linux-armv7l/wheel/./SyMBac 2026-03-05T06:46:39,803 copying build/lib/SyMBac/_deprecation.py -> build/bdist.linux-armv7l/wheel/./SyMBac 2026-03-05T06:46:39,805 copying build/lib/SyMBac/cell_geometry.py -> build/bdist.linux-armv7l/wheel/./SyMBac 2026-03-05T06:46:39,807 copying build/lib/SyMBac/auto_optimise.py -> build/bdist.linux-armv7l/wheel/./SyMBac 2026-03-05T06:46:39,811 copying build/lib/SyMBac/simulation.py -> build/bdist.linux-armv7l/wheel/./SyMBac 2026-03-05T06:46:39,814 copying build/lib/SyMBac/lineage.py -> build/bdist.linux-armv7l/wheel/./SyMBac 2026-03-05T06:46:39,816 copying build/lib/SyMBac/renderer.py -> build/bdist.linux-armv7l/wheel/./SyMBac 2026-03-05T06:46:39,820 copying build/lib/SyMBac/pySHINE.py -> build/bdist.linux-armv7l/wheel/./SyMBac 2026-03-05T06:46:39,822 copying build/lib/SyMBac/metrics.py -> build/bdist.linux-armv7l/wheel/./SyMBac 2026-03-05T06:46:39,825 creating build/bdist.linux-armv7l/wheel/SyMBac/external 2026-03-05T06:46:39,827 creating build/bdist.linux-armv7l/wheel/SyMBac/external/DeLTA 2026-03-05T06:46:39,828 copying build/lib/SyMBac/external/DeLTA/train_seg.py -> build/bdist.linux-armv7l/wheel/./SyMBac/external/DeLTA 2026-03-05T06:46:39,830 copying build/lib/SyMBac/external/DeLTA/utilities.py -> build/bdist.linux-armv7l/wheel/./SyMBac/external/DeLTA 2026-03-05T06:46:39,833 copying build/lib/SyMBac/external/DeLTA/train_track.py -> build/bdist.linux-armv7l/wheel/./SyMBac/external/DeLTA 2026-03-05T06:46:39,835 copying build/lib/SyMBac/external/DeLTA/segmentation.py -> build/bdist.linux-armv7l/wheel/./SyMBac/external/DeLTA 2026-03-05T06:46:39,837 copying build/lib/SyMBac/external/DeLTA/tracking.py -> build/bdist.linux-armv7l/wheel/./SyMBac/external/DeLTA 2026-03-05T06:46:39,839 copying build/lib/SyMBac/external/DeLTA/config.py -> build/bdist.linux-armv7l/wheel/./SyMBac/external/DeLTA 2026-03-05T06:46:39,841 copying build/lib/SyMBac/external/DeLTA/train_seg_chambers.py -> build/bdist.linux-armv7l/wheel/./SyMBac/external/DeLTA 2026-03-05T06:46:39,843 copying build/lib/SyMBac/external/DeLTA/segmentation_chambers.py -> build/bdist.linux-armv7l/wheel/./SyMBac/external/DeLTA 2026-03-05T06:46:39,845 copying build/lib/SyMBac/external/DeLTA/pipeline.py -> build/bdist.linux-armv7l/wheel/./SyMBac/external/DeLTA 2026-03-05T06:46:39,849 copying build/lib/SyMBac/external/DeLTA/model.py -> build/bdist.linux-armv7l/wheel/./SyMBac/external/DeLTA 2026-03-05T06:46:39,851 copying build/lib/SyMBac/external/DeLTA/bioformats2sequence.py -> build/bdist.linux-armv7l/wheel/./SyMBac/external/DeLTA 2026-03-05T06:46:39,853 copying build/lib/SyMBac/external/DeLTA/__init__.py -> build/bdist.linux-armv7l/wheel/./SyMBac/external/DeLTA 2026-03-05T06:46:39,854 copying build/lib/SyMBac/external/DeLTA/data.py -> build/bdist.linux-armv7l/wheel/./SyMBac/external/DeLTA 2026-03-05T06:46:39,857 copying build/lib/SyMBac/external/__init__.py -> build/bdist.linux-armv7l/wheel/./SyMBac/external 2026-03-05T06:46:39,859 copying build/lib/SyMBac/colony_simulation.py -> build/bdist.linux-armv7l/wheel/./SyMBac 2026-03-05T06:46:39,862 creating build/bdist.linux-armv7l/wheel/SyMBac/sample_images 2026-03-05T06:46:39,864 copying build/lib/SyMBac/sample_images/sample_100x.tiff -> build/bdist.linux-armv7l/wheel/./SyMBac/sample_images 2026-03-05T06:46:39,866 copying build/lib/SyMBac/sample_images/sample_100x_stationary.tiff -> build/bdist.linux-armv7l/wheel/./SyMBac/sample_images 2026-03-05T06:46:39,869 copying build/lib/SyMBac/sample_images/sample_DeLTA.tiff -> build/bdist.linux-armv7l/wheel/./SyMBac/sample_images 2026-03-05T06:46:39,872 copying build/lib/SyMBac/sample_images/__init__.py -> build/bdist.linux-armv7l/wheel/./SyMBac/sample_images 2026-03-05T06:46:39,875 creating build/bdist.linux-armv7l/wheel/SyMBac/physics 2026-03-05T06:46:39,876 copying build/lib/SyMBac/physics/growth_manager.py -> build/bdist.linux-armv7l/wheel/./SyMBac/physics 2026-03-05T06:46:39,878 copying build/lib/SyMBac/physics/joints.py -> build/bdist.linux-armv7l/wheel/./SyMBac/physics 2026-03-05T06:46:39,880 copying build/lib/SyMBac/physics/simulator.py -> build/bdist.linux-armv7l/wheel/./SyMBac/physics 2026-03-05T06:46:39,883 copying build/lib/SyMBac/physics/physics_representation.py -> build/bdist.linux-armv7l/wheel/./SyMBac/physics 2026-03-05T06:46:39,885 copying build/lib/SyMBac/physics/colony.py -> build/bdist.linux-armv7l/wheel/./SyMBac/physics 2026-03-05T06:46:39,888 copying build/lib/SyMBac/physics/segments.py -> build/bdist.linux-armv7l/wheel/./SyMBac/physics 2026-03-05T06:46:39,890 copying build/lib/SyMBac/physics/config.py -> build/bdist.linux-armv7l/wheel/./SyMBac/physics 2026-03-05T06:46:39,893 copying build/lib/SyMBac/physics/microfluidic_geometry.py -> build/bdist.linux-armv7l/wheel/./SyMBac/physics 2026-03-05T06:46:39,896 copying build/lib/SyMBac/physics/simcell.py -> build/bdist.linux-armv7l/wheel/./SyMBac/physics 2026-03-05T06:46:39,899 copying build/lib/SyMBac/physics/__init__.py -> build/bdist.linux-armv7l/wheel/./SyMBac/physics 2026-03-05T06:46:39,901 copying build/lib/SyMBac/physics/division_manager.py -> build/bdist.linux-armv7l/wheel/./SyMBac/physics 2026-03-05T06:46:39,903 copying build/lib/SyMBac/cell.py -> build/bdist.linux-armv7l/wheel/./SyMBac 2026-03-05T06:46:39,905 copying build/lib/SyMBac/__init__.py -> build/bdist.linux-armv7l/wheel/./SyMBac 2026-03-05T06:46:39,907 copying build/lib/SyMBac/trench_geometry.py -> build/bdist.linux-armv7l/wheel/./SyMBac 2026-03-05T06:46:39,909 running install_egg_info 2026-03-05T06:46:39,914 Copying SyMBac.egg-info to build/bdist.linux-armv7l/wheel/./SyMBac-0.5.1-py3.11.egg-info 2026-03-05T06:46:39,925 running install_scripts 2026-03-05T06:46:39,937 creating build/bdist.linux-armv7l/wheel/symbac-0.5.1.dist-info/WHEEL 2026-03-05T06:46:39,940 creating '/tmp/pip-wheel-xysclbac/.tmp-hiuy7izt/symbac-0.5.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-03-05T06:46:39,943 adding 'SyMBac/PSF.py' 2026-03-05T06:46:39,945 adding 'SyMBac/__init__.py' 2026-03-05T06:46:39,946 adding 'SyMBac/_deprecation.py' 2026-03-05T06:46:39,950 adding 'SyMBac/auto_optimise.py' 2026-03-05T06:46:39,952 adding 'SyMBac/cell.py' 2026-03-05T06:46:39,953 adding 'SyMBac/cell_geometry.py' 2026-03-05T06:46:39,955 adding 'SyMBac/cell_simulation.py' 2026-03-05T06:46:39,957 adding 'SyMBac/cell_snapshot.py' 2026-03-05T06:46:39,959 adding 'SyMBac/colony_renderer.py' 2026-03-05T06:46:39,961 adding 'SyMBac/colony_simulation.py' 2026-03-05T06:46:39,964 adding 'SyMBac/drawing.py' 2026-03-05T06:46:39,966 adding 'SyMBac/lineage.py' 2026-03-05T06:46:39,967 adding 'SyMBac/metrics.py' 2026-03-05T06:46:39,969 adding 'SyMBac/misc.py' 2026-03-05T06:46:39,971 adding 'SyMBac/pySHINE.py' 2026-03-05T06:46:39,977 adding 'SyMBac/renderer.py' 2026-03-05T06:46:39,981 adding 'SyMBac/simulation.py' 2026-03-05T06:46:39,983 adding 'SyMBac/trench_geometry.py' 2026-03-05T06:46:39,985 adding 'SyMBac/deep_learning/__init__.py' 2026-03-05T06:46:39,986 adding 'SyMBac/deep_learning/loss.py' 2026-03-05T06:46:39,988 adding 'SyMBac/deep_learning/model_blocks.py' 2026-03-05T06:46:39,990 adding 'SyMBac/deep_learning/tensorflow_augmentations.py' 2026-03-05T06:46:39,992 adding 'SyMBac/external/__init__.py' 2026-03-05T06:46:39,994 adding 'SyMBac/external/DeLTA/__init__.py' 2026-03-05T06:46:39,995 adding 'SyMBac/external/DeLTA/bioformats2sequence.py' 2026-03-05T06:46:39,996 adding 'SyMBac/external/DeLTA/config.py' 2026-03-05T06:46:40,000 adding 'SyMBac/external/DeLTA/data.py' 2026-03-05T06:46:40,002 adding 'SyMBac/external/DeLTA/model.py' 2026-03-05T06:46:40,005 adding 'SyMBac/external/DeLTA/pipeline.py' 2026-03-05T06:46:40,007 adding 'SyMBac/external/DeLTA/segmentation.py' 2026-03-05T06:46:40,008 adding 'SyMBac/external/DeLTA/segmentation_chambers.py' 2026-03-05T06:46:40,009 adding 'SyMBac/external/DeLTA/tracking.py' 2026-03-05T06:46:40,011 adding 'SyMBac/external/DeLTA/train_seg.py' 2026-03-05T06:46:40,012 adding 'SyMBac/external/DeLTA/train_seg_chambers.py' 2026-03-05T06:46:40,013 adding 'SyMBac/external/DeLTA/train_track.py' 2026-03-05T06:46:40,020 adding 'SyMBac/external/DeLTA/utilities.py' 2026-03-05T06:46:40,022 adding 'SyMBac/physics/__init__.py' 2026-03-05T06:46:40,023 adding 'SyMBac/physics/colony.py' 2026-03-05T06:46:40,025 adding 'SyMBac/physics/config.py' 2026-03-05T06:46:40,027 adding 'SyMBac/physics/division_manager.py' 2026-03-05T06:46:40,028 adding 'SyMBac/physics/growth_manager.py' 2026-03-05T06:46:40,030 adding 'SyMBac/physics/joints.py' 2026-03-05T06:46:40,031 adding 'SyMBac/physics/microfluidic_geometry.py' 2026-03-05T06:46:40,033 adding 'SyMBac/physics/physics_representation.py' 2026-03-05T06:46:40,035 adding 'SyMBac/physics/segments.py' 2026-03-05T06:46:40,037 adding 'SyMBac/physics/simcell.py' 2026-03-05T06:46:40,039 adding 'SyMBac/physics/simulator.py' 2026-03-05T06:46:40,041 adding 'SyMBac/sample_images/__init__.py' 2026-03-05T06:46:40,044 adding 'SyMBac/sample_images/sample_100x.tiff' 2026-03-05T06:46:40,048 adding 'SyMBac/sample_images/sample_100x_stationary.tiff' 2026-03-05T06:46:40,053 adding 'SyMBac/sample_images/sample_DeLTA.tiff' 2026-03-05T06:46:40,058 adding 'symbac-0.5.1.dist-info/licenses/LICENSE' 2026-03-05T06:46:40,060 adding 'symbac-0.5.1.dist-info/METADATA' 2026-03-05T06:46:40,061 adding 'symbac-0.5.1.dist-info/WHEEL' 2026-03-05T06:46:40,062 adding 'symbac-0.5.1.dist-info/top_level.txt' 2026-03-05T06:46:40,063 adding 'symbac-0.5.1.dist-info/RECORD' 2026-03-05T06:46:40,068 removing build/bdist.linux-armv7l/wheel 2026-03-05T06:46:40,185 Building wheel for symbac (pyproject.toml): finished with status 'done' 2026-03-05T06:46:40,193 Created wheel for symbac: filename=symbac-0.5.1-py3-none-any.whl size=212849 sha256=8866e3b4ed933be82b49e3a8cc06955ab3acb8deb4c3cc528648b0ceb5633b78 2026-03-05T06:46:40,194 Stored in directory: /tmp/pip-ephem-wheel-cache-7zcs5w73/wheels/e4/eb/ea/c37bb563ed24c2f40a09e71c83f0d24c8ac3e5becf053b5cf5 2026-03-05T06:46:40,208 Successfully built symbac 2026-03-05T06:46:40,217 Removed build tracker: '/tmp/pip-build-tracker-0burljbm'