2026-03-05T06:46:59,620 Created temporary directory: /tmp/pip-ephem-wheel-cache-w0eknrx5 2026-03-05T06:46:59,622 Created temporary directory: /tmp/pip-build-tracker-6n33nc1l 2026-03-05T06:46:59,622 Initialized build tracking at /tmp/pip-build-tracker-6n33nc1l 2026-03-05T06:46:59,623 Created build tracker: /tmp/pip-build-tracker-6n33nc1l 2026-03-05T06:46:59,623 Entered build tracker: /tmp/pip-build-tracker-6n33nc1l 2026-03-05T06:46:59,624 Created temporary directory: /tmp/pip-wheel-gxvgyrhz 2026-03-05T06:46:59,627 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-05T06:46:59,629 Created temporary directory: /tmp/pip-ephem-wheel-cache-x3mk4w6u 2026-03-05T06:46:59,651 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-05T06:46:59,654 2 location(s) to search for versions of skimgpt: 2026-03-05T06:46:59,654 * https://pypi.org/simple/skimgpt/ 2026-03-05T06:46:59,654 * https://www.piwheels.org/simple/skimgpt/ 2026-03-05T06:46:59,655 Fetching project page and analyzing links: https://pypi.org/simple/skimgpt/ 2026-03-05T06:46:59,656 Getting page https://pypi.org/simple/skimgpt/ 2026-03-05T06:46:59,657 Found index url https://pypi.org/simple 2026-03-05T06:46:59,931 Fetched page https://pypi.org/simple/skimgpt/ as application/vnd.pypi.simple.v1+json 2026-03-05T06:46:59,934 Skipping link: No binaries permitted for skimgpt: https://files.pythonhosted.org/packages/5b/e4/159fa6d31e797670c16a966f329e887553320fd41121ecbc37f1f42a927b/skimgpt-1.0.0-py3-none-any.whl (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10) 2026-03-05T06:46:59,945 Found link https://files.pythonhosted.org/packages/4d/9e/f1e24804429e7da0e9280b116b97ba5810a130b52dd9ccecceadd6ccf55e/skimgpt-1.0.0.tar.gz (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10), version: 1.0.0 2026-03-05T06:46:59,946 Skipping link: No binaries permitted for skimgpt: https://files.pythonhosted.org/packages/7c/53/cc52c8549904b6c89d007f1068a31346c3e75f09cbbc90a8189e4f60f874/skimgpt-1.0.5-py3-none-any.whl (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10) 2026-03-05T06:46:59,947 Found link https://files.pythonhosted.org/packages/38/40/2a659285343186f5bb160e4163f8f4e5b10687be47c4546ad4a8d3c6c16e/skimgpt-1.0.5.tar.gz (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10), version: 1.0.5 2026-03-05T06:46:59,947 Skipping link: No binaries permitted for skimgpt: https://files.pythonhosted.org/packages/ab/06/547b283132634bdd63656d313a025913d71ee5b1d612f3bfcc2d98331b99/skimgpt-1.0.6-py3-none-any.whl (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10) 2026-03-05T06:46:59,948 Found link https://files.pythonhosted.org/packages/e4/49/56dc12f28a9a69bec4368adfa335368866c377cf787db7cff12019293df8/skimgpt-1.0.6.tar.gz (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10), version: 1.0.6 2026-03-05T06:46:59,949 Skipping link: No binaries permitted for skimgpt: https://files.pythonhosted.org/packages/36/a3/b40a6e16d6d7e25fcf2945fbc1c4d449933135d27a10f649b276f62ab304/skimgpt-1.1-py3-none-any.whl (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10) 2026-03-05T06:46:59,951 Found link https://files.pythonhosted.org/packages/85/01/d401992a768ff3495f5e69595ef2fe1fd7f8c7dc5c3c433237cdafd0769e/skimgpt-1.1.tar.gz (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10), version: 1.1 2026-03-05T06:46:59,951 Skipping link: No binaries permitted for skimgpt: https://files.pythonhosted.org/packages/80/50/375197c9b2b61c37e2b8d8cd33499efdaaf60c1e0909dc5b8642ab27dfa8/skimgpt-1.2-py3-none-any.whl (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10) 2026-03-05T06:46:59,952 Found link https://files.pythonhosted.org/packages/58/fb/fb5ef967d884a2fbf8328f2f83d016a56044c34950ab8b08e638fea90bec/skimgpt-1.2.tar.gz (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10), version: 1.2 2026-03-05T06:46:59,953 Skipping link: No binaries permitted for skimgpt: https://files.pythonhosted.org/packages/ce/3d/bcd1dfe57b3ee8c801068f70b93a0ec837f223c9ba58579fcf5e37f5f3e5/skimgpt-2.0.0-py3-none-any.whl (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10) 2026-03-05T06:46:59,955 Found link https://files.pythonhosted.org/packages/42/85/156a9d7f9d57005e8bdee47a32d8a03e67c8945b2aa566f5fe69358a91b7/skimgpt-2.0.0.tar.gz (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10), version: 2.0.0 2026-03-05T06:46:59,957 Skipping link: No binaries permitted for skimgpt: https://files.pythonhosted.org/packages/65/51/2ba8c6987885f5fe0d82a0a1ab74c7fbd2dfb314b6cb3bb31925b08f1b8a/skimgpt-2.0.1-py3-none-any.whl (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10) 2026-03-05T06:46:59,958 Found link https://files.pythonhosted.org/packages/ed/db/eacff4a9448c070b51b770a6c2f701fb1b2d837b0aea32ae7a08abe612f4/skimgpt-2.0.1.tar.gz (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10), version: 2.0.1 2026-03-05T06:46:59,959 Fetching project page and analyzing links: https://www.piwheels.org/simple/skimgpt/ 2026-03-05T06:46:59,959 Getting page https://www.piwheels.org/simple/skimgpt/ 2026-03-05T06:46:59,960 Found index url https://www.piwheels.org/simple 2026-03-05T06:47:00,131 Fetched page https://www.piwheels.org/simple/skimgpt/ as text/html 2026-03-05T06:47:00,135 Skipping link: No binaries permitted for skimgpt: https://www.piwheels.org/simple/skimgpt/skimgpt-2.0.0-py3-none-any.whl#sha256=02e3c90f86cd6a5371cd622874f4f57fd3679d08cb1a2a1b5cf236552e9b003c (from https://www.piwheels.org/simple/skimgpt/) (requires-python:>=3.10) 2026-03-05T06:47:00,136 Skipping link: No binaries permitted for skimgpt: https://archive1.piwheels.org/simple/skimgpt/skimgpt-1.2-py3-none-any.whl#sha256=b4c4adbd30536892239d0d70fe47125b6e254968cae2cc74d10b71df90f3f55e (from https://www.piwheels.org/simple/skimgpt/) (requires-python:>=3.10) 2026-03-05T06:47:00,137 Skipping link: No binaries permitted for skimgpt: https://archive1.piwheels.org/simple/skimgpt/skimgpt-1.1-py3-none-any.whl#sha256=480c4ea401f7b080c2c4f06dbde341d6c4dba2629b04b574e64e4fe18979326b (from https://www.piwheels.org/simple/skimgpt/) (requires-python:>=3.10) 2026-03-05T06:47:00,138 Skipping link: No binaries permitted for skimgpt: https://archive1.piwheels.org/simple/skimgpt/skimgpt-1.0.6-py3-none-any.whl#sha256=a974ad27fdafa96f8e13df016211ba558c585668756dc22dc6bab39e6ad87f5c (from https://www.piwheels.org/simple/skimgpt/) (requires-python:>=3.10) 2026-03-05T06:47:00,138 Skipping link: No binaries permitted for skimgpt: https://archive1.piwheels.org/simple/skimgpt/skimgpt-1.0.5-py3-none-any.whl#sha256=4e4532d70e84030ef8e4886eadc21b1bec5f8478e56e5178ffe3e4b10d0e5872 (from https://www.piwheels.org/simple/skimgpt/) (requires-python:>=3.10) 2026-03-05T06:47:00,139 Skipping link: No binaries permitted for skimgpt: https://archive1.piwheels.org/simple/skimgpt/skimgpt-1.0.0-py3-none-any.whl#sha256=4d72bc94b7b7efab9758f02986de73ee8e6624597343dba106c538245c978553 (from https://www.piwheels.org/simple/skimgpt/) (requires-python:>=3.10) 2026-03-05T06:47:00,140 Skipping link: not a file: https://www.piwheels.org/simple/skimgpt/ 2026-03-05T06:47:00,141 Skipping link: not a file: https://pypi.org/simple/skimgpt/ 2026-03-05T06:47:00,169 Given no hashes to check 1 links for project 'skimgpt': discarding no candidates 2026-03-05T06:47:00,189 Collecting skimgpt==2.0.1 2026-03-05T06:47:00,192 Created temporary directory: /tmp/pip-unpack-b3wyq76_ 2026-03-05T06:47:00,417 Downloading skimgpt-2.0.1.tar.gz (227 kB) 2026-03-05T06:47:00,670 Added skimgpt==2.0.1 from https://files.pythonhosted.org/packages/ed/db/eacff4a9448c070b51b770a6c2f701fb1b2d837b0aea32ae7a08abe612f4/skimgpt-2.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-6n33nc1l' 2026-03-05T06:47:00,679 Created temporary directory: /tmp/pip-build-env-z4qfu7tk 2026-03-05T06:47:00,683 Installing build dependencies: started 2026-03-05T06:47:00,685 Running command pip subprocess to install build dependencies 2026-03-05T06:47:02,066 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-03-05T06:47:02,677 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-05T06:47:02,700 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-05T06:47:04,481 Collecting setuptools>=45 2026-03-05T06:47:04,560 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.0-py3-none-any.whl (1.0 MB) 2026-03-05T06:47:04,823 Collecting wheel 2026-03-05T06:47:04,837 Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB) 2026-03-05T06:47:05,166 Collecting setuptools_scm[toml]>=6.2 2026-03-05T06:47:05,181 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-9.2.2-py3-none-any.whl (62 kB) 2026-03-05T06:47:05,370 Collecting packaging>=24.0 2026-03-05T06:47:05,417 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-03-05T06:47:08,458 Installing collected packages: setuptools, packaging, wheel, setuptools_scm 2026-03-05T06:47:11,824 Creating /tmp/pip-build-env-z4qfu7tk/overlay/local/bin 2026-03-05T06:47:11,826 changing mode of /tmp/pip-build-env-z4qfu7tk/overlay/local/bin/wheel to 755 2026-03-05T06:47:12,079 changing mode of /tmp/pip-build-env-z4qfu7tk/overlay/local/bin/setuptools-scm to 755 2026-03-05T06:47:12,109 Successfully installed packaging-26.0 setuptools-82.0.0 setuptools_scm-9.2.2 wheel-0.46.3 2026-03-05T06:47:12,397 Installing build dependencies: finished with status 'done' 2026-03-05T06:47:12,403 Getting requirements to build wheel: started 2026-03-05T06:47:12,404 Running command Getting requirements to build wheel 2026-03-05T06:47:13,111 /tmp/pip-build-env-z4qfu7tk/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-05T06:47:13,111 !! 2026-03-05T06:47:13,112 ******************************************************************************** 2026-03-05T06:47:13,113 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-05T06:47:13,114 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-05T06:47:13,115 or your builds will no longer be supported. 2026-03-05T06:47:13,116 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-05T06:47:13,116 ******************************************************************************** 2026-03-05T06:47:13,117 !! 2026-03-05T06:47:13,118 corresp(dist, value, root_dir) 2026-03-05T06:47:13,199 /tmp/pip-build-env-z4qfu7tk/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-03-05T06:47:13,200 !! 2026-03-05T06:47:13,201 ******************************************************************************** 2026-03-05T06:47:13,202 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-03-05T06:47:13,203 License :: OSI Approved :: MIT License 2026-03-05T06:47:13,204 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-05T06:47:13,205 ******************************************************************************** 2026-03-05T06:47:13,206 !! 2026-03-05T06:47:13,207 dist._finalize_license_expression() 2026-03-05T06:47:13,208 /tmp/pip-build-env-z4qfu7tk/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-03-05T06:47:13,208 !! 2026-03-05T06:47:13,209 ******************************************************************************** 2026-03-05T06:47:13,209 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-03-05T06:47:13,210 License :: OSI Approved :: MIT License 2026-03-05T06:47:13,211 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-05T06:47:13,212 ******************************************************************************** 2026-03-05T06:47:13,213 !! 2026-03-05T06:47:13,213 self._finalize_license_expression() 2026-03-05T06:47:13,219 running egg_info 2026-03-05T06:47:13,227 writing skimgpt.egg-info/PKG-INFO 2026-03-05T06:47:13,234 writing dependency_links to skimgpt.egg-info/dependency_links.txt 2026-03-05T06:47:13,236 writing entry points to skimgpt.egg-info/entry_points.txt 2026-03-05T06:47:13,240 writing requirements to skimgpt.egg-info/requires.txt 2026-03-05T06:47:13,242 writing top-level names to skimgpt.egg-info/top_level.txt 2026-03-05T06:47:13,300 listing git files failed - pretending there aren't any 2026-03-05T06:47:13,305 reading manifest file 'skimgpt.egg-info/SOURCES.txt' 2026-03-05T06:47:13,310 reading manifest template 'MANIFEST.in' 2026-03-05T06:47:13,312 warning: no files found matching 'main.py' 2026-03-05T06:47:13,313 warning: no files found matching 'run_multiple_analyses.sh' 2026-03-05T06:47:13,313 warning: no files found matching '*.py' under directory 'src' 2026-03-05T06:47:13,314 warning: no files found matching '*.sh' under directory 'src' 2026-03-05T06:47:13,316 warning: no previously-included files found matching 'test/*' 2026-03-05T06:47:13,317 warning: no previously-included files found matching '.git*' 2026-03-05T06:47:13,317 warning: no previously-included files found matching '.pytest_cache' 2026-03-05T06:47:13,318 warning: no previously-included files found matching '__pycache__' 2026-03-05T06:47:13,319 warning: no previously-included files found matching '*.pyc' 2026-03-05T06:47:13,319 warning: no previously-included files found matching '.ipynb_checkpoints' 2026-03-05T06:47:13,324 writing manifest file 'skimgpt.egg-info/SOURCES.txt' 2026-03-05T06:47:13,424 Getting requirements to build wheel: finished with status 'done' 2026-03-05T06:47:13,428 Created temporary directory: /tmp/pip-modern-metadata-vw79wnoi 2026-03-05T06:47:13,431 Preparing metadata (pyproject.toml): started 2026-03-05T06:47:13,432 Running command Preparing metadata (pyproject.toml) 2026-03-05T06:47:14,106 /tmp/pip-build-env-z4qfu7tk/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-05T06:47:14,107 !! 2026-03-05T06:47:14,108 ******************************************************************************** 2026-03-05T06:47:14,109 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-05T06:47:14,110 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-05T06:47:14,111 or your builds will no longer be supported. 2026-03-05T06:47:14,112 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-05T06:47:14,113 ******************************************************************************** 2026-03-05T06:47:14,114 !! 2026-03-05T06:47:14,115 corresp(dist, value, root_dir) 2026-03-05T06:47:14,186 /tmp/pip-build-env-z4qfu7tk/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-03-05T06:47:14,187 !! 2026-03-05T06:47:14,188 ******************************************************************************** 2026-03-05T06:47:14,188 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-03-05T06:47:14,189 License :: OSI Approved :: MIT License 2026-03-05T06:47:14,190 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-05T06:47:14,191 ******************************************************************************** 2026-03-05T06:47:14,192 !! 2026-03-05T06:47:14,192 dist._finalize_license_expression() 2026-03-05T06:47:14,193 /tmp/pip-build-env-z4qfu7tk/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-03-05T06:47:14,193 !! 2026-03-05T06:47:14,194 ******************************************************************************** 2026-03-05T06:47:14,195 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-03-05T06:47:14,196 License :: OSI Approved :: MIT License 2026-03-05T06:47:14,196 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-05T06:47:14,197 ******************************************************************************** 2026-03-05T06:47:14,198 !! 2026-03-05T06:47:14,199 self._finalize_license_expression() 2026-03-05T06:47:14,199 running dist_info 2026-03-05T06:47:14,211 creating /tmp/pip-modern-metadata-vw79wnoi/skimgpt.egg-info 2026-03-05T06:47:14,212 writing /tmp/pip-modern-metadata-vw79wnoi/skimgpt.egg-info/PKG-INFO 2026-03-05T06:47:14,218 writing dependency_links to /tmp/pip-modern-metadata-vw79wnoi/skimgpt.egg-info/dependency_links.txt 2026-03-05T06:47:14,220 writing entry points to /tmp/pip-modern-metadata-vw79wnoi/skimgpt.egg-info/entry_points.txt 2026-03-05T06:47:14,223 writing requirements to /tmp/pip-modern-metadata-vw79wnoi/skimgpt.egg-info/requires.txt 2026-03-05T06:47:14,224 writing top-level names to /tmp/pip-modern-metadata-vw79wnoi/skimgpt.egg-info/top_level.txt 2026-03-05T06:47:14,226 writing manifest file '/tmp/pip-modern-metadata-vw79wnoi/skimgpt.egg-info/SOURCES.txt' 2026-03-05T06:47:14,274 listing git files failed - pretending there aren't any 2026-03-05T06:47:14,279 reading manifest file '/tmp/pip-modern-metadata-vw79wnoi/skimgpt.egg-info/SOURCES.txt' 2026-03-05T06:47:14,281 reading manifest template 'MANIFEST.in' 2026-03-05T06:47:14,282 warning: no files found matching 'main.py' 2026-03-05T06:47:14,282 warning: no files found matching 'run_multiple_analyses.sh' 2026-03-05T06:47:14,283 warning: no files found matching '*.py' under directory 'src' 2026-03-05T06:47:14,283 warning: no files found matching '*.sh' under directory 'src' 2026-03-05T06:47:14,285 warning: no previously-included files found matching 'test/*' 2026-03-05T06:47:14,286 warning: no previously-included files found matching '.git*' 2026-03-05T06:47:14,286 warning: no previously-included files found matching '.pytest_cache' 2026-03-05T06:47:14,287 warning: no previously-included files found matching '__pycache__' 2026-03-05T06:47:14,287 warning: no previously-included files found matching '*.pyc' 2026-03-05T06:47:14,288 warning: no previously-included files found matching '.ipynb_checkpoints' 2026-03-05T06:47:14,292 writing manifest file '/tmp/pip-modern-metadata-vw79wnoi/skimgpt.egg-info/SOURCES.txt' 2026-03-05T06:47:14,293 creating '/tmp/pip-modern-metadata-vw79wnoi/skimgpt-2.0.1.dist-info' 2026-03-05T06:47:14,419 Preparing metadata (pyproject.toml): finished with status 'done' 2026-03-05T06:47:14,424 Source in /tmp/pip-wheel-gxvgyrhz/skimgpt_7afe66ad176a4a7ca09ae0154715acab has version 2.0.1, which satisfies requirement skimgpt==2.0.1 from https://files.pythonhosted.org/packages/ed/db/eacff4a9448c070b51b770a6c2f701fb1b2d837b0aea32ae7a08abe612f4/skimgpt-2.0.1.tar.gz 2026-03-05T06:47:14,425 Removed skimgpt==2.0.1 from https://files.pythonhosted.org/packages/ed/db/eacff4a9448c070b51b770a6c2f701fb1b2d837b0aea32ae7a08abe612f4/skimgpt-2.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-6n33nc1l' 2026-03-05T06:47:14,432 Created temporary directory: /tmp/pip-unpack-shlvjv4c 2026-03-05T06:47:14,432 Building wheels for collected packages: skimgpt 2026-03-05T06:47:14,437 Created temporary directory: /tmp/pip-wheel-6qojq7pw 2026-03-05T06:47:14,437 Destination directory: /tmp/pip-wheel-6qojq7pw 2026-03-05T06:47:14,439 Building wheel for skimgpt (pyproject.toml): started 2026-03-05T06:47:14,440 Running command Building wheel for skimgpt (pyproject.toml) 2026-03-05T06:47:15,069 /tmp/pip-build-env-z4qfu7tk/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-05T06:47:15,069 !! 2026-03-05T06:47:15,070 ******************************************************************************** 2026-03-05T06:47:15,071 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-05T06:47:15,072 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-05T06:47:15,072 or your builds will no longer be supported. 2026-03-05T06:47:15,073 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-05T06:47:15,074 ******************************************************************************** 2026-03-05T06:47:15,075 !! 2026-03-05T06:47:15,075 corresp(dist, value, root_dir) 2026-03-05T06:47:15,143 /tmp/pip-build-env-z4qfu7tk/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-03-05T06:47:15,144 !! 2026-03-05T06:47:15,145 ******************************************************************************** 2026-03-05T06:47:15,146 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-03-05T06:47:15,147 License :: OSI Approved :: MIT License 2026-03-05T06:47:15,148 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-05T06:47:15,149 ******************************************************************************** 2026-03-05T06:47:15,150 !! 2026-03-05T06:47:15,151 dist._finalize_license_expression() 2026-03-05T06:47:15,152 /tmp/pip-build-env-z4qfu7tk/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-03-05T06:47:15,152 !! 2026-03-05T06:47:15,153 ******************************************************************************** 2026-03-05T06:47:15,154 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-03-05T06:47:15,155 License :: OSI Approved :: MIT License 2026-03-05T06:47:15,156 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-05T06:47:15,157 ******************************************************************************** 2026-03-05T06:47:15,158 !! 2026-03-05T06:47:15,159 self._finalize_license_expression() 2026-03-05T06:47:15,159 running bdist_wheel 2026-03-05T06:47:15,175 running build 2026-03-05T06:47:15,175 running build_py 2026-03-05T06:47:15,183 creating build/lib/skimgpt 2026-03-05T06:47:15,185 copying skimgpt/prompt_library.py -> build/lib/skimgpt 2026-03-05T06:47:15,188 copying skimgpt/utils.py -> build/lib/skimgpt 2026-03-05T06:47:15,191 copying skimgpt/retry.py -> build/lib/skimgpt 2026-03-05T06:47:15,193 copying skimgpt/classifier.py -> build/lib/skimgpt 2026-03-05T06:47:15,196 copying skimgpt/scoring_guidelines.py -> build/lib/skimgpt 2026-03-05T06:47:15,199 copying skimgpt/eval_JSON_results.py -> build/lib/skimgpt 2026-03-05T06:47:15,201 copying skimgpt/__init__.py -> build/lib/skimgpt 2026-03-05T06:47:15,203 copying skimgpt/relevance_chtc.py -> build/lib/skimgpt 2026-03-05T06:47:15,206 copying skimgpt/main.py -> build/lib/skimgpt 2026-03-05T06:47:15,208 copying skimgpt/triton_client.py -> build/lib/skimgpt 2026-03-05T06:47:15,211 copying skimgpt/relevance_helper.py -> build/lib/skimgpt 2026-03-05T06:47:15,214 copying skimgpt/htcondor_helper.py -> build/lib/skimgpt 2026-03-05T06:47:15,216 copying skimgpt/relevance_triton.py -> build/lib/skimgpt 2026-03-05T06:47:15,218 copying skimgpt/pubmed_fetcher.py -> build/lib/skimgpt 2026-03-05T06:47:15,221 copying skimgpt/cost_estimator.py -> build/lib/skimgpt 2026-03-05T06:47:15,223 copying skimgpt/skim_and_km_api.py -> build/lib/skimgpt 2026-03-05T06:47:15,227 creating build/lib/skimgpt/visualization 2026-03-05T06:47:15,228 copying skimgpt/visualization/plot_hyp_stats.py -> build/lib/skimgpt/visualization 2026-03-05T06:47:15,230 copying skimgpt/visualization/__init__.py -> build/lib/skimgpt/visualization 2026-03-05T06:47:15,233 copying skimgpt/visualization/plot_separate_runs.py -> build/lib/skimgpt/visualization 2026-03-05T06:47:15,235 copying skimgpt/visualization/hyp_stats.py -> build/lib/skimgpt/visualization 2026-03-05T06:47:15,238 copying skimgpt/visualization/bayesian_ci.py -> build/lib/skimgpt/visualization 2026-03-05T06:47:15,240 running egg_info 2026-03-05T06:47:15,252 writing skimgpt.egg-info/PKG-INFO 2026-03-05T06:47:15,259 writing dependency_links to skimgpt.egg-info/dependency_links.txt 2026-03-05T06:47:15,260 writing entry points to skimgpt.egg-info/entry_points.txt 2026-03-05T06:47:15,264 writing requirements to skimgpt.egg-info/requires.txt 2026-03-05T06:47:15,265 writing top-level names to skimgpt.egg-info/top_level.txt 2026-03-05T06:47:15,304 listing git files failed - pretending there aren't any 2026-03-05T06:47:15,308 reading manifest file 'skimgpt.egg-info/SOURCES.txt' 2026-03-05T06:47:15,313 reading manifest template 'MANIFEST.in' 2026-03-05T06:47:15,314 warning: no files found matching 'main.py' 2026-03-05T06:47:15,315 warning: no files found matching 'run_multiple_analyses.sh' 2026-03-05T06:47:15,315 warning: no files found matching '*.py' under directory 'src' 2026-03-05T06:47:15,316 warning: no files found matching '*.sh' under directory 'src' 2026-03-05T06:47:15,318 warning: no previously-included files found matching 'test/*' 2026-03-05T06:47:15,319 warning: no previously-included files found matching '.git*' 2026-03-05T06:47:15,319 warning: no previously-included files found matching '.pytest_cache' 2026-03-05T06:47:15,320 warning: no previously-included files found matching '__pycache__' 2026-03-05T06:47:15,321 warning: no previously-included files found matching '*.pyc' 2026-03-05T06:47:15,321 warning: no previously-included files found matching '.ipynb_checkpoints' 2026-03-05T06:47:15,326 writing manifest file 'skimgpt.egg-info/SOURCES.txt' 2026-03-05T06:47:15,329 /tmp/pip-build-env-z4qfu7tk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skimgpt.visualization.example_data.CVD_HormonevsStatins' is absent from the `packages` configuration. 2026-03-05T06:47:15,329 !! 2026-03-05T06:47:15,331 ******************************************************************************** 2026-03-05T06:47:15,331 ############################ 2026-03-05T06:47:15,332 # Package would be ignored # 2026-03-05T06:47:15,333 ############################ 2026-03-05T06:47:15,333 Python recognizes 'skimgpt.visualization.example_data.CVD_HormonevsStatins' as an importable package[^1], 2026-03-05T06:47:15,334 but it is absent from setuptools' `packages` configuration. 2026-03-05T06:47:15,335 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-05T06:47:15,336 package, please make sure that 'skimgpt.visualization.example_data.CVD_HormonevsStatins' is explicitly added 2026-03-05T06:47:15,336 to the `packages` configuration field. 2026-03-05T06:47:15,337 Alternatively, you can also rely on setuptools' discovery methods 2026-03-05T06:47:15,337 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-05T06:47:15,338 instead of `find_packages(...)`/`find:`). 2026-03-05T06:47:15,339 You can read more about "package discovery" on setuptools documentation page: 2026-03-05T06:47:15,339 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-05T06:47:15,340 If you don't want 'skimgpt.visualization.example_data.CVD_HormonevsStatins' to be distributed and are 2026-03-05T06:47:15,341 already explicitly excluding 'skimgpt.visualization.example_data.CVD_HormonevsStatins' via 2026-03-05T06:47:15,341 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-05T06:47:15,342 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-05T06:47:15,342 combination with a more fine grained `package-data` configuration. 2026-03-05T06:47:15,343 You can read more about "package data files" on setuptools documentation page: 2026-03-05T06:47:15,344 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-05T06:47:15,345 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-05T06:47:15,346 even if it does not contain any `.py` files. 2026-03-05T06:47:15,346 On the other hand, currently there is no concept of package data 2026-03-05T06:47:15,347 directory, all directories are treated like packages. 2026-03-05T06:47:15,347 ******************************************************************************** 2026-03-05T06:47:15,348 !! 2026-03-05T06:47:15,349 check.warn(importable) 2026-03-05T06:47:15,349 /tmp/pip-build-env-z4qfu7tk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skimgpt.visualization.example_data.autism_GPvsVaccine' is absent from the `packages` configuration. 2026-03-05T06:47:15,350 !! 2026-03-05T06:47:15,351 ******************************************************************************** 2026-03-05T06:47:15,352 ############################ 2026-03-05T06:47:15,352 # Package would be ignored # 2026-03-05T06:47:15,353 ############################ 2026-03-05T06:47:15,353 Python recognizes 'skimgpt.visualization.example_data.autism_GPvsVaccine' as an importable package[^1], 2026-03-05T06:47:15,354 but it is absent from setuptools' `packages` configuration. 2026-03-05T06:47:15,355 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-05T06:47:15,355 package, please make sure that 'skimgpt.visualization.example_data.autism_GPvsVaccine' is explicitly added 2026-03-05T06:47:15,356 to the `packages` configuration field. 2026-03-05T06:47:15,357 Alternatively, you can also rely on setuptools' discovery methods 2026-03-05T06:47:15,357 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-05T06:47:15,358 instead of `find_packages(...)`/`find:`). 2026-03-05T06:47:15,359 You can read more about "package discovery" on setuptools documentation page: 2026-03-05T06:47:15,360 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-05T06:47:15,361 If you don't want 'skimgpt.visualization.example_data.autism_GPvsVaccine' to be distributed and are 2026-03-05T06:47:15,362 already explicitly excluding 'skimgpt.visualization.example_data.autism_GPvsVaccine' via 2026-03-05T06:47:15,362 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-05T06:47:15,363 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-05T06:47:15,363 combination with a more fine grained `package-data` configuration. 2026-03-05T06:47:15,364 You can read more about "package data files" on setuptools documentation page: 2026-03-05T06:47:15,365 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-05T06:47:15,366 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-05T06:47:15,366 even if it does not contain any `.py` files. 2026-03-05T06:47:15,367 On the other hand, currently there is no concept of package data 2026-03-05T06:47:15,367 directory, all directories are treated like packages. 2026-03-05T06:47:15,368 ******************************************************************************** 2026-03-05T06:47:15,369 !! 2026-03-05T06:47:15,369 check.warn(importable) 2026-03-05T06:47:15,369 /tmp/pip-build-env-z4qfu7tk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skimgpt.visualization.example_data.autism_microbiomeVsGP' is absent from the `packages` configuration. 2026-03-05T06:47:15,370 !! 2026-03-05T06:47:15,371 ******************************************************************************** 2026-03-05T06:47:15,371 ############################ 2026-03-05T06:47:15,372 # Package would be ignored # 2026-03-05T06:47:15,372 ############################ 2026-03-05T06:47:15,373 Python recognizes 'skimgpt.visualization.example_data.autism_microbiomeVsGP' as an importable package[^1], 2026-03-05T06:47:15,373 but it is absent from setuptools' `packages` configuration. 2026-03-05T06:47:15,374 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-05T06:47:15,375 package, please make sure that 'skimgpt.visualization.example_data.autism_microbiomeVsGP' is explicitly added 2026-03-05T06:47:15,375 to the `packages` configuration field. 2026-03-05T06:47:15,376 Alternatively, you can also rely on setuptools' discovery methods 2026-03-05T06:47:15,377 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-05T06:47:15,377 instead of `find_packages(...)`/`find:`). 2026-03-05T06:47:15,378 You can read more about "package discovery" on setuptools documentation page: 2026-03-05T06:47:15,380 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-05T06:47:15,381 If you don't want 'skimgpt.visualization.example_data.autism_microbiomeVsGP' to be distributed and are 2026-03-05T06:47:15,381 already explicitly excluding 'skimgpt.visualization.example_data.autism_microbiomeVsGP' via 2026-03-05T06:47:15,382 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-05T06:47:15,382 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-05T06:47:15,383 combination with a more fine grained `package-data` configuration. 2026-03-05T06:47:15,384 You can read more about "package data files" on setuptools documentation page: 2026-03-05T06:47:15,385 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-05T06:47:15,387 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-05T06:47:15,387 even if it does not contain any `.py` files. 2026-03-05T06:47:15,388 On the other hand, currently there is no concept of package data 2026-03-05T06:47:15,388 directory, all directories are treated like packages. 2026-03-05T06:47:15,389 ******************************************************************************** 2026-03-05T06:47:15,390 !! 2026-03-05T06:47:15,391 check.warn(importable) 2026-03-05T06:47:15,391 /tmp/pip-build-env-z4qfu7tk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skimgpt.visualization.example_data.autism_microbiomevsVax' is absent from the `packages` configuration. 2026-03-05T06:47:15,391 !! 2026-03-05T06:47:15,392 ******************************************************************************** 2026-03-05T06:47:15,393 ############################ 2026-03-05T06:47:15,393 # Package would be ignored # 2026-03-05T06:47:15,393 ############################ 2026-03-05T06:47:15,394 Python recognizes 'skimgpt.visualization.example_data.autism_microbiomevsVax' as an importable package[^1], 2026-03-05T06:47:15,395 but it is absent from setuptools' `packages` configuration. 2026-03-05T06:47:15,395 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-05T06:47:15,396 package, please make sure that 'skimgpt.visualization.example_data.autism_microbiomevsVax' is explicitly added 2026-03-05T06:47:15,396 to the `packages` configuration field. 2026-03-05T06:47:15,398 Alternatively, you can also rely on setuptools' discovery methods 2026-03-05T06:47:15,398 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-05T06:47:15,398 instead of `find_packages(...)`/`find:`). 2026-03-05T06:47:15,399 You can read more about "package discovery" on setuptools documentation page: 2026-03-05T06:47:15,400 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-05T06:47:15,401 If you don't want 'skimgpt.visualization.example_data.autism_microbiomevsVax' to be distributed and are 2026-03-05T06:47:15,402 already explicitly excluding 'skimgpt.visualization.example_data.autism_microbiomevsVax' via 2026-03-05T06:47:15,403 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-05T06:47:15,403 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-05T06:47:15,404 combination with a more fine grained `package-data` configuration. 2026-03-05T06:47:15,405 You can read more about "package data files" on setuptools documentation page: 2026-03-05T06:47:15,406 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-05T06:47:15,408 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-05T06:47:15,408 even if it does not contain any `.py` files. 2026-03-05T06:47:15,409 On the other hand, currently there is no concept of package data 2026-03-05T06:47:15,409 directory, all directories are treated like packages. 2026-03-05T06:47:15,410 ******************************************************************************** 2026-03-05T06:47:15,411 !! 2026-03-05T06:47:15,411 check.warn(importable) 2026-03-05T06:47:15,412 /tmp/pip-build-env-z4qfu7tk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skimgpt.visualization.example_data.cervical_cancer' is absent from the `packages` configuration. 2026-03-05T06:47:15,412 !! 2026-03-05T06:47:15,413 ******************************************************************************** 2026-03-05T06:47:15,414 ############################ 2026-03-05T06:47:15,414 # Package would be ignored # 2026-03-05T06:47:15,415 ############################ 2026-03-05T06:47:15,415 Python recognizes 'skimgpt.visualization.example_data.cervical_cancer' as an importable package[^1], 2026-03-05T06:47:15,416 but it is absent from setuptools' `packages` configuration. 2026-03-05T06:47:15,417 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-05T06:47:15,418 package, please make sure that 'skimgpt.visualization.example_data.cervical_cancer' is explicitly added 2026-03-05T06:47:15,418 to the `packages` configuration field. 2026-03-05T06:47:15,419 Alternatively, you can also rely on setuptools' discovery methods 2026-03-05T06:47:15,420 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-05T06:47:15,420 instead of `find_packages(...)`/`find:`). 2026-03-05T06:47:15,421 You can read more about "package discovery" on setuptools documentation page: 2026-03-05T06:47:15,422 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-05T06:47:15,423 If you don't want 'skimgpt.visualization.example_data.cervical_cancer' to be distributed and are 2026-03-05T06:47:15,424 already explicitly excluding 'skimgpt.visualization.example_data.cervical_cancer' via 2026-03-05T06:47:15,424 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-05T06:47:15,424 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-05T06:47:15,425 combination with a more fine grained `package-data` configuration. 2026-03-05T06:47:15,426 You can read more about "package data files" on setuptools documentation page: 2026-03-05T06:47:15,427 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-05T06:47:15,428 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-05T06:47:15,429 even if it does not contain any `.py` files. 2026-03-05T06:47:15,429 On the other hand, currently there is no concept of package data 2026-03-05T06:47:15,430 directory, all directories are treated like packages. 2026-03-05T06:47:15,430 ******************************************************************************** 2026-03-05T06:47:15,431 !! 2026-03-05T06:47:15,432 check.warn(importable) 2026-03-05T06:47:15,432 /tmp/pip-build-env-z4qfu7tk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skimgpt.visualization.example_data.peptic_ulcer' is absent from the `packages` configuration. 2026-03-05T06:47:15,433 !! 2026-03-05T06:47:15,434 ******************************************************************************** 2026-03-05T06:47:15,435 ############################ 2026-03-05T06:47:15,436 # Package would be ignored # 2026-03-05T06:47:15,436 ############################ 2026-03-05T06:47:15,437 Python recognizes 'skimgpt.visualization.example_data.peptic_ulcer' as an importable package[^1], 2026-03-05T06:47:15,438 but it is absent from setuptools' `packages` configuration. 2026-03-05T06:47:15,439 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-05T06:47:15,439 package, please make sure that 'skimgpt.visualization.example_data.peptic_ulcer' is explicitly added 2026-03-05T06:47:15,440 to the `packages` configuration field. 2026-03-05T06:47:15,441 Alternatively, you can also rely on setuptools' discovery methods 2026-03-05T06:47:15,442 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-05T06:47:15,442 instead of `find_packages(...)`/`find:`). 2026-03-05T06:47:15,443 You can read more about "package discovery" on setuptools documentation page: 2026-03-05T06:47:15,444 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-05T06:47:15,446 If you don't want 'skimgpt.visualization.example_data.peptic_ulcer' to be distributed and are 2026-03-05T06:47:15,446 already explicitly excluding 'skimgpt.visualization.example_data.peptic_ulcer' via 2026-03-05T06:47:15,447 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-05T06:47:15,448 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-05T06:47:15,449 combination with a more fine grained `package-data` configuration. 2026-03-05T06:47:15,450 You can read more about "package data files" on setuptools documentation page: 2026-03-05T06:47:15,450 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-05T06:47:15,451 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-05T06:47:15,452 even if it does not contain any `.py` files. 2026-03-05T06:47:15,452 On the other hand, currently there is no concept of package data 2026-03-05T06:47:15,453 directory, all directories are treated like packages. 2026-03-05T06:47:15,453 ******************************************************************************** 2026-03-05T06:47:15,454 !! 2026-03-05T06:47:15,455 check.warn(importable) 2026-03-05T06:47:15,455 /tmp/pip-build-env-z4qfu7tk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skimgpt.visualization.example_data.scrapie' is absent from the `packages` configuration. 2026-03-05T06:47:15,456 !! 2026-03-05T06:47:15,457 ******************************************************************************** 2026-03-05T06:47:15,457 ############################ 2026-03-05T06:47:15,458 # Package would be ignored # 2026-03-05T06:47:15,458 ############################ 2026-03-05T06:47:15,459 Python recognizes 'skimgpt.visualization.example_data.scrapie' as an importable package[^1], 2026-03-05T06:47:15,459 but it is absent from setuptools' `packages` configuration. 2026-03-05T06:47:15,460 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-05T06:47:15,460 package, please make sure that 'skimgpt.visualization.example_data.scrapie' is explicitly added 2026-03-05T06:47:15,461 to the `packages` configuration field. 2026-03-05T06:47:15,462 Alternatively, you can also rely on setuptools' discovery methods 2026-03-05T06:47:15,463 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-05T06:47:15,464 instead of `find_packages(...)`/`find:`). 2026-03-05T06:47:15,465 You can read more about "package discovery" on setuptools documentation page: 2026-03-05T06:47:15,466 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-05T06:47:15,467 If you don't want 'skimgpt.visualization.example_data.scrapie' to be distributed and are 2026-03-05T06:47:15,468 already explicitly excluding 'skimgpt.visualization.example_data.scrapie' via 2026-03-05T06:47:15,469 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-05T06:47:15,469 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-05T06:47:15,470 combination with a more fine grained `package-data` configuration. 2026-03-05T06:47:15,471 You can read more about "package data files" on setuptools documentation page: 2026-03-05T06:47:15,472 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-05T06:47:15,473 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-05T06:47:15,474 even if it does not contain any `.py` files. 2026-03-05T06:47:15,475 On the other hand, currently there is no concept of package data 2026-03-05T06:47:15,475 directory, all directories are treated like packages. 2026-03-05T06:47:15,476 ******************************************************************************** 2026-03-05T06:47:15,477 !! 2026-03-05T06:47:15,478 check.warn(importable) 2026-03-05T06:47:15,478 copying skimgpt/run.sh -> build/lib/skimgpt 2026-03-05T06:47:15,479 copying skimgpt/visualization/bayesian_ci_commandline.txt -> build/lib/skimgpt/visualization 2026-03-05T06:47:15,480 copying skimgpt/visualization/hyp_stats_commandline.txt -> build/lib/skimgpt/visualization 2026-03-05T06:47:15,480 copying skimgpt/visualization/plot_hyp_stats_commandline.txt -> build/lib/skimgpt/visualization 2026-03-05T06:47:15,481 copying skimgpt/visualization/plot_separate_runs_commandline.txt -> build/lib/skimgpt/visualization 2026-03-05T06:47:15,481 creating build/lib/skimgpt/visualization/example_data/CVD_HormonevsStatins 2026-03-05T06:47:15,482 copying skimgpt/visualization/example_data/CVD_HormonevsStatins/km_hyp_stats.txt -> build/lib/skimgpt/visualization/example_data/CVD_HormonevsStatins 2026-03-05T06:47:15,482 copying skimgpt/visualization/example_data/CVD_HormonevsStatins/km_kept.txt -> build/lib/skimgpt/visualization/example_data/CVD_HormonevsStatins 2026-03-05T06:47:15,482 creating build/lib/skimgpt/visualization/example_data/autism_GPvsVaccine 2026-03-05T06:47:15,483 copying skimgpt/visualization/example_data/autism_GPvsVaccine/km_hyp_stats.txt -> build/lib/skimgpt/visualization/example_data/autism_GPvsVaccine 2026-03-05T06:47:15,483 copying skimgpt/visualization/example_data/autism_GPvsVaccine/km_kept.txt -> build/lib/skimgpt/visualization/example_data/autism_GPvsVaccine 2026-03-05T06:47:15,484 creating build/lib/skimgpt/visualization/example_data/autism_microbiomeVsGP 2026-03-05T06:47:15,484 copying skimgpt/visualization/example_data/autism_microbiomeVsGP/km_hyp_stats.txt -> build/lib/skimgpt/visualization/example_data/autism_microbiomeVsGP 2026-03-05T06:47:15,485 copying skimgpt/visualization/example_data/autism_microbiomeVsGP/km_kept.txt -> build/lib/skimgpt/visualization/example_data/autism_microbiomeVsGP 2026-03-05T06:47:15,485 creating build/lib/skimgpt/visualization/example_data/autism_microbiomevsVax 2026-03-05T06:47:15,486 copying skimgpt/visualization/example_data/autism_microbiomevsVax/km_hyp_stats.txt -> build/lib/skimgpt/visualization/example_data/autism_microbiomevsVax 2026-03-05T06:47:15,486 copying skimgpt/visualization/example_data/autism_microbiomevsVax/km_kept.txt -> build/lib/skimgpt/visualization/example_data/autism_microbiomevsVax 2026-03-05T06:47:15,487 creating build/lib/skimgpt/visualization/example_data/cervical_cancer 2026-03-05T06:47:15,488 copying skimgpt/visualization/example_data/cervical_cancer/km_hyp_stats.txt -> build/lib/skimgpt/visualization/example_data/cervical_cancer 2026-03-05T06:47:15,488 copying skimgpt/visualization/example_data/cervical_cancer/km_kept.txt -> build/lib/skimgpt/visualization/example_data/cervical_cancer 2026-03-05T06:47:15,489 creating build/lib/skimgpt/visualization/example_data/peptic_ulcer 2026-03-05T06:47:15,489 copying skimgpt/visualization/example_data/peptic_ulcer/km_hyp_stats.txt -> build/lib/skimgpt/visualization/example_data/peptic_ulcer 2026-03-05T06:47:15,490 copying skimgpt/visualization/example_data/peptic_ulcer/km_kept.txt -> build/lib/skimgpt/visualization/example_data/peptic_ulcer 2026-03-05T06:47:15,491 creating build/lib/skimgpt/visualization/example_data/scrapie 2026-03-05T06:47:15,491 copying skimgpt/visualization/example_data/scrapie/km_hyp_stats.txt -> build/lib/skimgpt/visualization/example_data/scrapie 2026-03-05T06:47:15,492 copying skimgpt/visualization/example_data/scrapie/km_kept.txt -> build/lib/skimgpt/visualization/example_data/scrapie 2026-03-05T06:47:15,492 installing to build/bdist.linux-armv7l/wheel 2026-03-05T06:47:15,493 running install 2026-03-05T06:47:15,493 running install_lib 2026-03-05T06:47:15,494 creating build/bdist.linux-armv7l/wheel 2026-03-05T06:47:15,494 creating build/bdist.linux-armv7l/wheel/skimgpt 2026-03-05T06:47:15,496 copying build/lib/skimgpt/prompt_library.py -> build/bdist.linux-armv7l/wheel/./skimgpt 2026-03-05T06:47:15,499 copying build/lib/skimgpt/utils.py -> build/bdist.linux-armv7l/wheel/./skimgpt 2026-03-05T06:47:15,502 creating build/bdist.linux-armv7l/wheel/skimgpt/visualization 2026-03-05T06:47:15,503 copying build/lib/skimgpt/visualization/bayesian_ci_commandline.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization 2026-03-05T06:47:15,505 copying build/lib/skimgpt/visualization/plot_hyp_stats.py -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization 2026-03-05T06:47:15,507 copying build/lib/skimgpt/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization 2026-03-05T06:47:15,510 creating build/bdist.linux-armv7l/wheel/skimgpt/visualization/example_data 2026-03-05T06:47:15,511 creating build/bdist.linux-armv7l/wheel/skimgpt/visualization/example_data/autism_microbiomeVsGP 2026-03-05T06:47:15,512 copying build/lib/skimgpt/visualization/example_data/autism_microbiomeVsGP/km_hyp_stats.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization/example_data/autism_microbiomeVsGP 2026-03-05T06:47:15,515 copying build/lib/skimgpt/visualization/example_data/autism_microbiomeVsGP/km_kept.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization/example_data/autism_microbiomeVsGP 2026-03-05T06:47:15,518 creating build/bdist.linux-armv7l/wheel/skimgpt/visualization/example_data/peptic_ulcer 2026-03-05T06:47:15,519 copying build/lib/skimgpt/visualization/example_data/peptic_ulcer/km_hyp_stats.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization/example_data/peptic_ulcer 2026-03-05T06:47:15,522 copying build/lib/skimgpt/visualization/example_data/peptic_ulcer/km_kept.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization/example_data/peptic_ulcer 2026-03-05T06:47:15,526 creating build/bdist.linux-armv7l/wheel/skimgpt/visualization/example_data/cervical_cancer 2026-03-05T06:47:15,527 copying build/lib/skimgpt/visualization/example_data/cervical_cancer/km_hyp_stats.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization/example_data/cervical_cancer 2026-03-05T06:47:15,531 copying build/lib/skimgpt/visualization/example_data/cervical_cancer/km_kept.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization/example_data/cervical_cancer 2026-03-05T06:47:15,535 creating build/bdist.linux-armv7l/wheel/skimgpt/visualization/example_data/CVD_HormonevsStatins 2026-03-05T06:47:15,536 copying build/lib/skimgpt/visualization/example_data/CVD_HormonevsStatins/km_hyp_stats.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization/example_data/CVD_HormonevsStatins 2026-03-05T06:47:15,539 copying build/lib/skimgpt/visualization/example_data/CVD_HormonevsStatins/km_kept.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization/example_data/CVD_HormonevsStatins 2026-03-05T06:47:15,542 creating build/bdist.linux-armv7l/wheel/skimgpt/visualization/example_data/autism_microbiomevsVax 2026-03-05T06:47:15,543 copying build/lib/skimgpt/visualization/example_data/autism_microbiomevsVax/km_hyp_stats.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization/example_data/autism_microbiomevsVax 2026-03-05T06:47:15,546 copying build/lib/skimgpt/visualization/example_data/autism_microbiomevsVax/km_kept.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization/example_data/autism_microbiomevsVax 2026-03-05T06:47:15,549 creating build/bdist.linux-armv7l/wheel/skimgpt/visualization/example_data/autism_GPvsVaccine 2026-03-05T06:47:15,550 copying build/lib/skimgpt/visualization/example_data/autism_GPvsVaccine/km_hyp_stats.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization/example_data/autism_GPvsVaccine 2026-03-05T06:47:15,553 copying build/lib/skimgpt/visualization/example_data/autism_GPvsVaccine/km_kept.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization/example_data/autism_GPvsVaccine 2026-03-05T06:47:15,564 creating build/bdist.linux-armv7l/wheel/skimgpt/visualization/example_data/scrapie 2026-03-05T06:47:15,565 copying build/lib/skimgpt/visualization/example_data/scrapie/km_hyp_stats.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization/example_data/scrapie 2026-03-05T06:47:15,568 copying build/lib/skimgpt/visualization/example_data/scrapie/km_kept.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization/example_data/scrapie 2026-03-05T06:47:15,571 copying build/lib/skimgpt/visualization/plot_separate_runs.py -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization 2026-03-05T06:47:15,574 copying build/lib/skimgpt/visualization/hyp_stats.py -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization 2026-03-05T06:47:15,576 copying build/lib/skimgpt/visualization/bayesian_ci.py -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization 2026-03-05T06:47:15,578 copying build/lib/skimgpt/visualization/hyp_stats_commandline.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization 2026-03-05T06:47:15,580 copying build/lib/skimgpt/visualization/plot_separate_runs_commandline.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization 2026-03-05T06:47:15,582 copying build/lib/skimgpt/visualization/plot_hyp_stats_commandline.txt -> build/bdist.linux-armv7l/wheel/./skimgpt/visualization 2026-03-05T06:47:15,583 copying build/lib/skimgpt/retry.py -> build/bdist.linux-armv7l/wheel/./skimgpt 2026-03-05T06:47:15,585 copying build/lib/skimgpt/classifier.py -> build/bdist.linux-armv7l/wheel/./skimgpt 2026-03-05T06:47:15,587 copying build/lib/skimgpt/scoring_guidelines.py -> build/bdist.linux-armv7l/wheel/./skimgpt 2026-03-05T06:47:15,590 copying build/lib/skimgpt/eval_JSON_results.py -> build/bdist.linux-armv7l/wheel/./skimgpt 2026-03-05T06:47:15,593 copying build/lib/skimgpt/__init__.py -> build/bdist.linux-armv7l/wheel/./skimgpt 2026-03-05T06:47:15,594 copying build/lib/skimgpt/relevance_chtc.py -> build/bdist.linux-armv7l/wheel/./skimgpt 2026-03-05T06:47:15,597 copying build/lib/skimgpt/run.sh -> build/bdist.linux-armv7l/wheel/./skimgpt 2026-03-05T06:47:15,598 copying build/lib/skimgpt/main.py -> build/bdist.linux-armv7l/wheel/./skimgpt 2026-03-05T06:47:15,601 copying build/lib/skimgpt/triton_client.py -> build/bdist.linux-armv7l/wheel/./skimgpt 2026-03-05T06:47:15,603 copying build/lib/skimgpt/relevance_helper.py -> build/bdist.linux-armv7l/wheel/./skimgpt 2026-03-05T06:47:15,606 copying build/lib/skimgpt/htcondor_helper.py -> build/bdist.linux-armv7l/wheel/./skimgpt 2026-03-05T06:47:15,608 copying build/lib/skimgpt/relevance_triton.py -> build/bdist.linux-armv7l/wheel/./skimgpt 2026-03-05T06:47:15,611 copying build/lib/skimgpt/pubmed_fetcher.py -> build/bdist.linux-armv7l/wheel/./skimgpt 2026-03-05T06:47:15,613 copying build/lib/skimgpt/cost_estimator.py -> build/bdist.linux-armv7l/wheel/./skimgpt 2026-03-05T06:47:15,616 copying build/lib/skimgpt/skim_and_km_api.py -> build/bdist.linux-armv7l/wheel/./skimgpt 2026-03-05T06:47:15,618 running install_egg_info 2026-03-05T06:47:15,624 Copying skimgpt.egg-info to build/bdist.linux-armv7l/wheel/./skimgpt-2.0.1-py3.11.egg-info 2026-03-05T06:47:15,635 running install_scripts 2026-03-05T06:47:15,643 creating build/bdist.linux-armv7l/wheel/skimgpt-2.0.1.dist-info/WHEEL 2026-03-05T06:47:15,646 creating '/tmp/pip-wheel-6qojq7pw/.tmp-5icez01i/skimgpt-2.0.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-03-05T06:47:15,649 adding 'skimgpt/__init__.py' 2026-03-05T06:47:15,651 adding 'skimgpt/classifier.py' 2026-03-05T06:47:15,653 adding 'skimgpt/cost_estimator.py' 2026-03-05T06:47:15,655 adding 'skimgpt/eval_JSON_results.py' 2026-03-05T06:47:15,657 adding 'skimgpt/htcondor_helper.py' 2026-03-05T06:47:15,660 adding 'skimgpt/main.py' 2026-03-05T06:47:15,663 adding 'skimgpt/prompt_library.py' 2026-03-05T06:47:15,665 adding 'skimgpt/pubmed_fetcher.py' 2026-03-05T06:47:15,667 adding 'skimgpt/relevance_chtc.py' 2026-03-05T06:47:15,671 adding 'skimgpt/relevance_helper.py' 2026-03-05T06:47:15,673 adding 'skimgpt/relevance_triton.py' 2026-03-05T06:47:15,674 adding 'skimgpt/retry.py' 2026-03-05T06:47:15,676 adding 'skimgpt/run.sh' 2026-03-05T06:47:15,678 adding 'skimgpt/scoring_guidelines.py' 2026-03-05T06:47:15,680 adding 'skimgpt/skim_and_km_api.py' 2026-03-05T06:47:15,683 adding 'skimgpt/triton_client.py' 2026-03-05T06:47:15,686 adding 'skimgpt/utils.py' 2026-03-05T06:47:15,688 adding 'skimgpt/visualization/__init__.py' 2026-03-05T06:47:15,691 adding 'skimgpt/visualization/bayesian_ci.py' 2026-03-05T06:47:15,692 adding 'skimgpt/visualization/bayesian_ci_commandline.txt' 2026-03-05T06:47:15,695 adding 'skimgpt/visualization/hyp_stats.py' 2026-03-05T06:47:15,697 adding 'skimgpt/visualization/hyp_stats_commandline.txt' 2026-03-05T06:47:15,699 adding 'skimgpt/visualization/plot_hyp_stats.py' 2026-03-05T06:47:15,700 adding 'skimgpt/visualization/plot_hyp_stats_commandline.txt' 2026-03-05T06:47:15,702 adding 'skimgpt/visualization/plot_separate_runs.py' 2026-03-05T06:47:15,703 adding 'skimgpt/visualization/plot_separate_runs_commandline.txt' 2026-03-05T06:47:15,706 adding 'skimgpt/visualization/example_data/CVD_HormonevsStatins/km_hyp_stats.txt' 2026-03-05T06:47:15,709 adding 'skimgpt/visualization/example_data/CVD_HormonevsStatins/km_kept.txt' 2026-03-05T06:47:15,712 adding 'skimgpt/visualization/example_data/autism_GPvsVaccine/km_hyp_stats.txt' 2026-03-05T06:47:15,716 adding 'skimgpt/visualization/example_data/autism_GPvsVaccine/km_kept.txt' 2026-03-05T06:47:15,718 adding 'skimgpt/visualization/example_data/autism_microbiomeVsGP/km_hyp_stats.txt' 2026-03-05T06:47:15,721 adding 'skimgpt/visualization/example_data/autism_microbiomeVsGP/km_kept.txt' 2026-03-05T06:47:15,724 adding 'skimgpt/visualization/example_data/autism_microbiomevsVax/km_hyp_stats.txt' 2026-03-05T06:47:15,727 adding 'skimgpt/visualization/example_data/autism_microbiomevsVax/km_kept.txt' 2026-03-05T06:47:15,732 adding 'skimgpt/visualization/example_data/cervical_cancer/km_hyp_stats.txt' 2026-03-05T06:47:15,738 adding 'skimgpt/visualization/example_data/cervical_cancer/km_kept.txt' 2026-03-05T06:47:15,742 adding 'skimgpt/visualization/example_data/peptic_ulcer/km_hyp_stats.txt' 2026-03-05T06:47:15,745 adding 'skimgpt/visualization/example_data/peptic_ulcer/km_kept.txt' 2026-03-05T06:47:15,750 adding 'skimgpt/visualization/example_data/scrapie/km_hyp_stats.txt' 2026-03-05T06:47:15,754 adding 'skimgpt/visualization/example_data/scrapie/km_kept.txt' 2026-03-05T06:47:15,756 adding 'skimgpt-2.0.1.dist-info/METADATA' 2026-03-05T06:47:15,758 adding 'skimgpt-2.0.1.dist-info/WHEEL' 2026-03-05T06:47:15,758 adding 'skimgpt-2.0.1.dist-info/entry_points.txt' 2026-03-05T06:47:15,759 adding 'skimgpt-2.0.1.dist-info/top_level.txt' 2026-03-05T06:47:15,761 adding 'skimgpt-2.0.1.dist-info/RECORD' 2026-03-05T06:47:15,764 removing build/bdist.linux-armv7l/wheel 2026-03-05T06:47:15,879 Building wheel for skimgpt (pyproject.toml): finished with status 'done' 2026-03-05T06:47:15,887 Created wheel for skimgpt: filename=skimgpt-2.0.1-py3-none-any.whl size=169787 sha256=7facf52ed40df5f12628d4a87082df406a7a4d6d4547516d873870760e21790f 2026-03-05T06:47:15,888 Stored in directory: /tmp/pip-ephem-wheel-cache-x3mk4w6u/wheels/cb/62/96/66b2f9970b4937b1329750b5bf8fe1cc08994d27b290e8c24d 2026-03-05T06:47:15,901 Successfully built skimgpt 2026-03-05T06:47:15,908 Removed build tracker: '/tmp/pip-build-tracker-6n33nc1l'